-- dump date 20140619_043311 -- class Genbank::CDS -- table cds_note -- id note YP_001884266.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001884267.1 binds the polymerase to DNA and acts as a sliding clamp YP_001884268.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988 YP_001884269.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001884271.1 negatively supercoils closed circular double-stranded DNA YP_001884272.1 negatively supercoils closed circular double-stranded DNA YP_001884274.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_001884275.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001884276.1 identified by match to protein family HMM PF07892 YP_001884277.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001884278.1 identified by match to protein family HMM PF00583 YP_001884279.1 identified by match to protein family HMM TIGR02773 YP_001884280.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_001884281.1 identified by match to protein family HMM PF03734 YP_001884282.1 identified by glimmer YP_001884283.1 identified by match to protein family HMM PF00375 YP_001884284.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001884285.1 identified by match to protein family HMM PF00589 YP_001884286.1 identified by match to protein family HMM PF01381 YP_001884288.1 identified by glimmer YP_001884289.1 identified by glimmer YP_001884291.1 identified by glimmer YP_001884292.1 identified by match to protein family HMM PF04860 YP_001884293.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_001884294.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_001884296.1 identified by match to protein family HMM PF00589 YP_001884299.1 identified by match to protein family HMM PF03354 YP_001884300.1 identified by match to protein family HMM TIGR01563 YP_001884301.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937 YP_001884302.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281 YP_001884304.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001884305.1 identified by match to protein family HMM PF00440 YP_001884306.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001884307.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_001884308.1 identified by match to protein family HMM PF00005 YP_001884309.1 identified by match to protein family HMM PF00209 YP_001884310.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_001884311.1 identified by match to protein family HMM PF08876 YP_001884314.1 identified by match to protein family HMM PF07670 YP_001884315.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001884316.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001884317.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001884318.1 identified by match to protein family HMM PF00583 YP_001884319.1 identified by match to protein family HMM PF03703 YP_001884320.1 identified by match to protein family HMM PF03703 YP_001884321.1 identified by match to protein family HMM PF00106 YP_001884322.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001884323.1 identified by match to protein family HMM PF00015 YP_001884324.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001884325.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001884326.1 identified by match to protein family HMM PF01966 YP_001884327.1 identified by match to protein family HMM PF00120 YP_001884328.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001884329.1 identified by match to protein family HMM PF00160 YP_001884331.1 identified by match to protein family HMM PF01381 YP_001884332.1 identified by match to protein family HMM PF00082 YP_001884333.1 identified by match to protein family HMM PF01471 YP_001884334.1 identified by match to protein family HMM PF04055 YP_001884337.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_001884338.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate YP_001884339.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475 YP_001884340.1 identified by match to protein family HMM PF04324 YP_001884341.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001884342.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001884343.1 identified by match to protein family HMM PF09359 YP_001884345.1 identified by match to protein family HMM PF08757 YP_001884346.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001884347.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001884348.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001884350.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001884352.1 identified by match to protein family HMM PF07670 YP_001884353.1 identified by match to protein family HMM PF07670 YP_001884355.1 identified by match to protein family HMM PF03109 YP_001884356.1 identified by match to protein family HMM PF03553 YP_001884357.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001884359.1 identified by glimmer YP_001884360.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001884361.1 identified by match to protein family HMM PF00561 YP_001884362.1 identified by match to protein family HMM PF00230 YP_001884363.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase YP_001884364.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365 YP_001884365.1 identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364 YP_001884366.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001884367.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_001884368.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501 YP_001884369.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_001884370.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001884373.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001884377.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_001884378.1 identified by glimmer YP_001884379.1 identified by match to protein family HMM PF03551 YP_001884380.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001884381.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001884382.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis YP_001884383.1 Catalyzes the conversion of citrate to isocitrate YP_001884384.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990 YP_001884385.1 identified by match to protein family HMM TIGR02491 YP_001884386.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001884387.1 identified by glimmer YP_001884388.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001884389.1 identified by match to protein family HMM PF00128 YP_001884390.1 identified by match to protein family HMM PF01547 YP_001884391.1 identified by match to protein family HMM PF00528 YP_001884392.1 identified by match to protein family HMM PF00528 YP_001884393.1 identified by glimmer YP_001884394.1 identified by match to protein family HMM PF09587 YP_001884395.1 identified by match to protein family HMM PF02535 YP_001884396.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001884397.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001884398.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_001884399.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001884400.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_001884401.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_001884402.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001884403.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251 YP_001884404.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001884405.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001884406.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM TIGR00580 YP_001884407.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_001884408.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_001884409.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001884410.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_001884411.1 identified by match to protein family HMM PF00216 YP_001884412.1 identified by match to protein family HMM PF01479 YP_001884413.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_001884414.1 identified by match to protein family HMM PF04977 YP_001884415.1 identified by match to protein family HMM PF00575 YP_001884416.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_001884417.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_001884418.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001884419.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_001884420.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_001884421.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001884422.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_001884424.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001884425.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001884426.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001884427.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001884429.1 identified by glimmer YP_001884430.1 identified by match to protein family HMM PF01544 YP_001884434.1 identified by match to protein family HMM PF02223 YP_001884435.1 identified by match to protein family HMM PF06153 YP_001884436.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001884437.1 identified by match to protein family HMM PF04468 YP_001884438.1 identified by match to protein family HMM PF00037 YP_001884440.1 identified by match to protein family HMM PF05848 YP_001884441.1 identified by match to protein family HMM PF02151 YP_001884442.1 identified by match to protein family HMM PF00217 YP_001884443.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_001884444.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001884445.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001884446.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_001884447.1 identified by glimmer YP_001884448.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001884449.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001884451.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_001884452.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001884453.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001884454.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001884455.1 identified by match to protein family HMM PF00636 YP_001884456.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_001884457.1 identified by match to protein family HMM PF05991 YP_001884458.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001884459.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001884460.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001884461.1 Modulates Rho-dependent transcription termination YP_001884462.1 binds directly to 23S ribosomal RNA YP_001884463.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001884464.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001884465.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001884466.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001884467.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001884468.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001884469.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001884470.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001884471.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001884472.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001884473.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001884474.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001884475.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001884476.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001884477.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001884478.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001884479.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001884480.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001884481.1 one of the stabilizing components for the large ribosomal subunit YP_001884482.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001884483.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001884484.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001884485.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001884486.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001884487.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001884488.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001884489.1 binds 5S rRNA along with protein L5 and L25 YP_001884490.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001884491.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001884492.1 late assembly protein YP_001884493.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001884494.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001884495.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500 YP_001884497.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001884498.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001884499.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001884500.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001884501.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001884502.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001884503.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001884504.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene YP_001884505.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene YP_001884506.1 identified by match to protein family HMM PF02361 YP_001884507.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001884508.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001884509.1 forms a direct contact with the tRNA during translation YP_001884510.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001884511.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_001884512.1 identified by glimmer YP_001884513.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid YP_001884514.1 Catalyzes the reversible hydration of fumaric acid to yield l-malic acid YP_001884515.1 identified by match to protein family HMM PF02588 YP_001884516.1 identified by match to protein family HMM PF00515 YP_001884517.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001884518.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001884519.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001884520.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001884521.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_001884522.1 identified by match to protein family HMM PF02417 YP_001884523.1 identified by match to protein family HMM PF02417 YP_001884524.1 identified by match to protein family HMM PF00515 YP_001884525.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01975 YP_001884526.1 identified by match to protein family HMM PF07486 YP_001884527.1 identified by glimmer YP_001884528.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_001884529.1 identified by match to protein family HMM PF07949 YP_001884530.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001884531.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_001884532.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001884533.1 identified by match to protein family HMM PF01987 YP_001884534.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531 YP_001884535.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001884538.1 identified by glimmer YP_001884539.1 identified by glimmer YP_001884544.1 identified by glimmer YP_001884547.1 identified by glimmer YP_001884548.1 identified by match to protein family HMM PF00545 YP_001884551.1 identified by glimmer YP_001884554.1 identified by match to protein family HMM PF00560 YP_001884556.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_001884557.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001884558.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis YP_001884559.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001884560.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001884561.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_001884562.1 identified by match to protein family HMM PF01450; match to protein family HMM PF07991; match to protein family HMM TIGR00465 YP_001884563.1 identified by match to protein family HMM PF01541 YP_001884564.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001884565.1 identified by match to protein family HMM PF00128 YP_001884566.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_001884567.1 identified by match to protein family HMM PF03372 YP_001884568.1 identified by match to protein family HMM PF01047 YP_001884569.1 identified by match to protein family HMM TIGR01730 YP_001884570.1 identified by match to protein family HMM PF00873 YP_001884572.1 identified by match to protein family HMM PF01473 YP_001884573.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135 YP_001884574.1 identified by match to protein family HMM PF00027 YP_001884575.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001884576.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001884577.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_001884578.1 identified by match to protein family HMM PF01226 YP_001884580.1 identified by match to protein family HMM PF00484 YP_001884581.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_001884582.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326 YP_001884583.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001884585.1 identified by match to protein family HMM PF04309 YP_001884586.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_001884588.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001884590.1 identified by match to protein family HMM PF01522 YP_001884592.1 identified by match to protein family HMM PF02588 YP_001884593.1 catalyzes the formation of biotin from dethiobiotin and sulfur YP_001884594.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001884595.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_001884596.1 identified by glimmer YP_001884598.1 identified by match to protein family HMM PF01012 YP_001884599.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001884600.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001884601.1 identified by match to protein family HMM PF01734 YP_001884602.1 identified by match to protein family HMM PF02810 YP_001884603.1 identified by match to protein family HMM PF00483 YP_001884605.1 identified by match to protein family HMM PF01022 YP_001884606.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_001884607.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001884608.1 catalyzes the formation of crotonoyl-CoA from (3R)-3-hydroxybutanoyl-CoA YP_001884609.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001884610.1 identified by match to protein family HMM PF01012 YP_001884611.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001884612.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_001884613.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_001884614.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_001884615.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001884616.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001884617.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001884619.1 identified by match to protein family HMM PF01547 YP_001884620.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001884621.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001884622.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001884623.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001884624.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001884625.1 identified by glimmer YP_001884626.1 identified by match to protein family HMM PF00905 YP_001884628.1 identified by match to protein family HMM PF01522 YP_001884630.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_001884631.1 identified by match to protein family HMM PF06923 YP_001884632.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821 YP_001884635.1 identified by match to protein family HMM PF03829 YP_001884636.1 Converts D-sorbitol-dphosphate to D-fructose-6-phosphate YP_001884637.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_001884638.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001884639.1 identified by match to protein family HMM PF02639 YP_001884640.1 identified by match to protein family HMM PF07495 YP_001884641.1 identified by match to protein family HMM PF01464 YP_001884642.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001884643.1 identified by match to protein family HMM PF00580 YP_001884644.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001884645.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001884646.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001884647.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001884649.1 identified by match to protein family HMM PF00496 YP_001884651.1 identified by glimmer YP_001884652.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001884653.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001884654.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_001884655.1 identified by glimmer YP_001884656.1 identified by match to protein family HMM PF01522 YP_001884657.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001884658.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001884660.1 identified by match to protein family HMM PF01523 YP_001884661.1 identified by match to protein family HMM PF01523 YP_001884662.1 identified by match to protein family HMM PF00884 YP_001884664.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001884665.1 identified by match to protein family HMM PF00657 YP_001884666.1 identified by match to protein family HMM PF05866 YP_001884667.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001884669.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595 YP_001884671.1 identified by match to protein family HMM PF04346 YP_001884673.1 identified by match to protein family HMM PF00534 YP_001884674.1 identified by match to protein family HMM TIGR02906 YP_001884676.1 identified by match to protein family HMM TIGR02906 YP_001884677.1 identified by match to protein family HMM PF00534 YP_001884678.1 identified by match to protein family HMM TIGR02906 YP_001884679.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_001884680.1 identified by match to protein family HMM PF06257 YP_001884681.1 identified by match to protein family HMM PF01476 YP_001884682.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069 YP_001884683.1 catalyze the formation of cyanophycin which may act to store excess nitrogen YP_001884684.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001884685.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_001884686.1 identified by match to protein family HMM PF02568; match to protein family HMM PF05670 YP_001884687.1 identified by match to protein family HMM PF09148 YP_001884689.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001884690.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001884691.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925 YP_001884692.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001884693.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001884694.1 identified by match to protein family HMM PF07136 YP_001884695.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; match to protein family HMM TIGR03534 YP_001884696.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001884698.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_001884699.1 identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120 YP_001884700.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001884701.1 identified by match to protein family HMM PF00383 YP_001884702.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001884703.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_001884705.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001884706.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0 YP_001884707.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel YP_001884708.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001884709.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001884710.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001884711.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001884712.1 identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216 YP_001884713.1 identified by glimmer YP_001884714.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001884715.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_001884716.1 identified by match to protein family HMM PF01551 YP_001884717.1 identified by match to protein family HMM TIGR02844 YP_001884718.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_001884719.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001884721.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001884722.1 identified by match to protein family HMM TIGR01448 YP_001884724.1 identified by match to protein family HMM PF00156 YP_001884725.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_001884726.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001884728.2 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_001884729.1 identified by match to protein family HMM PF04389 YP_001884731.1 identified by glimmer YP_001884732.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_001884733.1 identified by match to protein family HMM PF01408 YP_001884734.1 identified by match to protein family HMM PF00892 YP_001884736.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_001884737.1 identified by match to protein family HMM PF00814 YP_001884738.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_001884739.1 identified by match to protein family HMM PF01297 YP_001884740.1 identified by glimmer YP_001884741.1 identified by match to protein family HMM PF00165 YP_001884742.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001884743.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_001884745.1 identified by match to protein family HMM PF00082 YP_001884746.1 identified by match to protein family HMM PF00082 YP_001884747.1 identified by match to protein family HMM PF03060 YP_001884748.1 identified by match to protein family HMM PF00269 YP_001884749.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001884751.1 identified by match to protein family HMM PF00149 YP_001884753.1 identified by match to protein family HMM PF01297 YP_001884754.1 identified by match to protein family HMM PF00488 YP_001884755.1 identified by match to protein family HMM PF00929 YP_001884756.1 identified by match to protein family HMM PF00571 YP_001884758.1 identified by match to protein family HMM PF04012 YP_001884759.1 identified by glimmer YP_001884760.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001884761.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001884762.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_001884763.1 identified by match to protein family HMM PF00583 YP_001884764.1 identified by match to protein family HMM PF05036 YP_001884765.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001884766.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001884767.1 functions in MreBCD complex in some organisms YP_001884768.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001884769.1 identified by match to protein family HMM TIGR03426 YP_001884770.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_001884771.1 blocks the formation of polar Z-ring septums YP_001884772.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_001884773.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_001884774.1 identified by match to protein family HMM PF01098 YP_001884775.1 identified by match to protein family HMM PF02142; match to protein family HMM TIGR00160 YP_001884776.1 identified by glimmer YP_001884777.1 identified by match to protein family HMM PF01551 YP_001884778.1 identified by match to protein family HMM PF02163 YP_001884779.1 identified by match to protein family HMM PF04055 YP_001884781.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757 YP_001884782.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_001884783.1 identified by match to protein family HMM PF04327 YP_001884784.1 involved in the peptidyltransferase reaction during translation YP_001884785.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001884786.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_001884787.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001884788.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_001884789.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_001884790.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_001884791.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001884793.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_001884796.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05175; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001884797.1 identified by match to protein family HMM PF00589 YP_001884798.1 identified by glimmer YP_001884799.1 identified by match to protein family HMM PF01381 YP_001884800.1 identified by match to protein family HMM PF01381 YP_001884801.1 identified by match to protein family HMM PF01381 YP_001884802.1 identified by match to protein family HMM TIGR01764 YP_001884805.1 identified by glimmer YP_001884806.1 identified by glimmer YP_001884808.1 identified by glimmer YP_001884809.1 identified by glimmer YP_001884810.1 identified by match to protein family HMM PF02976 YP_001884811.1 identified by glimmer YP_001884812.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_001884813.1 identified by glimmer YP_001884815.1 identified by glimmer YP_001884816.1 identified by match to protein family HMM TIGR02937 YP_001884817.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01520 YP_001884818.1 identified by glimmer YP_001884819.1 identified by match to protein family HMM PF00753 YP_001884822.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_001884823.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07719; match to protein family HMM TIGR00254 YP_001884824.1 identified by match to protein family HMM PF00704 YP_001884825.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954 YP_001884826.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases YP_001884827.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316 YP_001884828.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001884829.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate YP_001884830.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS YP_001884831.1 identified by match to protein family HMM PF02588 YP_001884832.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_001884833.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037 YP_001884834.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001884836.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001884838.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_001884839.1 identified by match to protein family HMM PF00383 YP_001884840.1 molybdenum cofactor-binding protein; participates in purine salvage YP_001884841.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage YP_001884842.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001884843.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001884844.1 identified by match to protein family HMM PF01497 YP_001884845.1 identified by match to protein family HMM PF01032 YP_001884846.1 identified by match to protein family HMM PF00005 YP_001884847.1 identified by match to protein family HMM TIGR03172 YP_001884848.1 identified by match to protein family HMM TIGR03309 YP_001884849.1 identified by match to protein family HMM PF01206; match to protein family HMM TIGR03527 YP_001884850.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476 YP_001884851.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001884853.1 identified by match to protein family HMM PF02625 YP_001884854.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_001884855.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01166 YP_001884856.1 identified by match to protein family HMM PF01891; match to protein family HMM TIGR00123 YP_001884857.1 identified by match to protein family HMM PF02553 YP_001884858.1 identified by glimmer YP_001884859.1 identified by glimmer YP_001884860.1 identified by match to protein family HMM PF00440 YP_001884863.1 identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08030 YP_001884865.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_001884866.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001884867.1 identified by match to protein family HMM PF00175 YP_001884868.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001884869.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001884870.1 identified by match to protein family HMM PF00160 YP_001884871.1 identified by match to protein family HMM PF06912 YP_001884872.1 identified by match to protein family HMM PF00583 YP_001884873.1 identified by match to protein family HMM PF00106 YP_001884874.1 identified by match to protein family HMM PF00561 YP_001884875.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_001884876.1 identified by match to protein family HMM PF01909 YP_001884878.1 identified by glimmer YP_001884879.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_001884880.1 identified by glimmer YP_001884883.1 identified by match to protein family HMM PF00005 YP_001884884.1 identified by match to protein family HMM PF00392 YP_001884885.1 identified by glimmer YP_001884886.1 identified by match to protein family HMM PF00037 YP_001884887.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04918 YP_001884889.1 identified by match to protein family HMM PF00501 YP_001884890.1 identified by match to protein family HMM PF03062 YP_001884891.1 identified by match to protein family HMM PF00550; match to protein family HMM TIGR01688 YP_001884892.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01229 YP_001884893.1 identified by match to protein family HMM PF03358 YP_001884894.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001884895.1 identified by glimmer YP_001884896.1 identified by glimmer YP_001884897.1 identified by glimmer YP_001884898.1 identified by glimmer YP_001884899.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001884900.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001884901.1 identified by match to protein family HMM PF01408 YP_001884904.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_001884906.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001884907.1 identified by match to protein family HMM PF07690 YP_001884908.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001884911.1 identified by glimmer YP_001884912.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001884913.1 identified by match to protein family HMM PF01261; match to protein family HMM TIGR00587 YP_001884914.1 identified by match to protein family HMM PF01266 YP_001884915.1 identified by match to protein family HMM PF03734 YP_001884916.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_001884917.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001884918.1 identified by match to protein family HMM PF01182; match to protein family HMM TIGR00502 YP_001884919.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_001884920.1 identified by match to protein family HMM PF03932 YP_001884921.1 identified by match to protein family HMM PF02632 YP_001884922.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433 YP_001884923.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001884924.1 identified by match to protein family HMM PF00376 YP_001884925.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001884926.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001884927.1 identified by match to protein family HMM PF01842; match to protein family HMM TIGR00119 YP_001884928.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118 YP_001884929.1 identified by match to protein family HMM PF02559 YP_001884932.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001884933.1 identified by match to protein family HMM PF00027 YP_001884934.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001884935.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_001884936.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644 YP_001884937.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001884939.1 identified by match to protein family HMM PF02588 YP_001884940.1 identified by match to protein family HMM PF04647 YP_001884942.1 identified by match to protein family HMM PF02518 YP_001884944.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_001884945.1 identified by match to protein family HMM PF00528 YP_001884946.1 identified by match to protein family HMM PF03180 YP_001884947.1 identified by match to protein family HMM PF06803 YP_001884948.1 identified by match to protein family HMM PF00075 YP_001884950.1 identified by match to protein family HMM PF00515 YP_001884951.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001884953.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_001884954.1 identified by match to protein family HMM PF00269 YP_001884955.1 identified by match to protein family HMM PF03576 YP_001884957.1 identified by match to protein family HMM PF01171 YP_001884959.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001884961.1 identified by match to protein family HMM PF01522 YP_001884962.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001884964.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_001884965.1 identified by match to protein family HMM PF00005 YP_001884966.1 identified by match to protein family HMM PF00440 YP_001884969.1 identified by match to protein family HMM PF00266 YP_001884970.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001884971.1 identified by match to protein family HMM PF02659 YP_001884972.1 identified by match to protein family HMM PF01475 YP_001884973.1 identified by match to protein family HMM PF00950 YP_001884974.1 identified by match to protein family HMM PF00005 YP_001884977.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_001884978.1 identified by match to protein family HMM PF01694 YP_001884980.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001884981.1 identified by match to protein family HMM PF00535 YP_001884982.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001884983.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001884984.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383 YP_001884985.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_001884986.1 identified by glimmer YP_001884987.1 identified by match to protein family HMM PF02550 YP_001884988.1 identified by match to protein family HMM PF00269 YP_001884989.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001884990.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_001884991.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001884993.1 identified by match to protein family HMM PF00155 YP_001884994.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001884995.1 identified by match to protein family HMM PF01063 YP_001884996.1 identified by match to protein family HMM PF03961 YP_001884997.1 identified by match to protein family HMM PF01584 YP_001884998.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001884999.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339 YP_001885000.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_001885001.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_001885002.1 identified by match to protein family HMM PF04509 YP_001885003.1 identified by match to protein family HMM PF00072 YP_001885004.1 identified by match to protein family HMM PF01584 YP_001885005.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 YP_001885006.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001885007.1 identified by match to protein family HMM PF04316 YP_001885009.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492 YP_001885010.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550 YP_001885011.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_001885012.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202 YP_001885013.1 identified by match to protein family HMM PF03646 YP_001885015.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208 YP_001885016.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195 YP_001885019.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001885020.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535 YP_001885021.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001885022.1 identified by match to protein family HMM PF01973 YP_001885024.1 identified by match to protein family HMM PF01973 YP_001885025.1 undetermined role; similar to CarB protein but much smaller YP_001885026.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001885028.1 identified by match to protein family HMM PF02348 YP_001885029.1 identified by match to protein family HMM PF00884 YP_001885030.1 identified by match to protein family HMM PF00266 YP_001885033.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001885034.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001885036.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001885037.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_001885038.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_001885039.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001885040.1 identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205 YP_001885041.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001885042.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001885044.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496; match to protein family HMM TIGR03497 YP_001885045.1 identified by match to protein family HMM TIGR02473 YP_001885046.1 identified by match to protein family HMM PF02120 YP_001885047.1 identified by match to protein family HMM PF03963 YP_001885048.1 identified by match to protein family HMM TIGR02530 YP_001885049.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_001885050.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR03506 YP_001885051.1 identified by match to protein family HMM PF06289 YP_001885052.1 identified by match to protein family HMM PF01618 YP_001885053.1 identified by match to protein family HMM PF00691 YP_001885054.1 identified by match to protein family HMM PF03748 YP_001885056.1 identified by match to protein family HMM PF00813; match to protein family HMM TIGR01103 YP_001885057.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402 YP_001885058.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined YP_001885059.1 membrane protein involved in the flagellar export apparatus YP_001885060.1 positive regulator of class III flagellar genes YP_001885061.1 identified by match to protein family HMM PF01656 YP_001885062.1 identified by match to protein family HMM PF07238 YP_001885063.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 YP_001885066.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene YP_001885067.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene YP_001885068.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001885069.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001885071.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001885073.1 identified by glimmer YP_001885074.1 identified by match to protein family HMM PF05362 YP_001885075.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_001885076.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001885077.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_001885078.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_001885079.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_001885080.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_001885081.1 identified by match to protein family HMM PF00122 YP_001885082.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360 YP_001885083.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001885084.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001885085.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001885086.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_001885087.1 identified by glimmer YP_001885088.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001885089.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001885090.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001885091.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001885092.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001885093.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001885094.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001885095.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001885096.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001885097.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001885098.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_001885099.1 identified by match to protein family HMM PF01230 YP_001885100.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001885101.1 identified by match to protein family HMM PF09424 YP_001885102.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_001885103.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_001885104.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_001885105.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_001885106.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569 YP_001885107.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001885108.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001885109.1 identified by match to protein family HMM PF00627 YP_001885110.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001885111.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001885112.1 identified by match to protein family HMM TIGR02906 YP_001885113.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_001885114.1 synthesizes RNA primers at the replication forks YP_001885115.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001885116.1 identified by match to protein family HMM PF04816 YP_001885117.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_001885118.1 identified by glimmer YP_001885119.1 identified by match to protein family HMM PF00589 YP_001885120.1 identified by match to protein family HMM PF06114 YP_001885121.1 identified by match to protein family HMM PF01381 YP_001885125.1 identified by match to protein family HMM PF08346 YP_001885126.1 identified by glimmer YP_001885127.1 identified by glimmer YP_001885129.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796 YP_001885130.1 identified by glimmer YP_001885131.1 identified by glimmer YP_001885132.1 identified by glimmer YP_001885134.1 identified by glimmer YP_001885135.1 identified by glimmer YP_001885136.1 identified by glimmer YP_001885138.1 identified by glimmer YP_001885139.1 identified by match to protein family HMM PF00589 YP_001885142.1 identified by match to protein family HMM TIGR01558 YP_001885143.1 identified by match to protein family HMM PF03354 YP_001885144.1 identified by glimmer YP_001885145.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001885146.1 identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543 YP_001885147.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_001885148.1 identified by match to protein family HMM TIGR01560 YP_001885149.1 identified by match to protein family HMM TIGR01563 YP_001885150.1 identified by match to protein family HMM TIGR01725 YP_001885152.1 identified by match to protein family HMM TIGR01603 YP_001885155.1 identified by match to protein family HMM TIGR01760 YP_001885157.1 identified by match to protein family HMM TIGR01665 YP_001885158.1 identified by glimmer YP_001885160.1 identified by glimmer YP_001885161.1 identified by glimmer YP_001885162.1 identified by glimmer YP_001885163.1 identified by glimmer YP_001885164.1 identified by glimmer YP_001885167.1 identified by match to protein family HMM PF01183 YP_001885173.1 identified by glimmer YP_001885174.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_001885176.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001885177.1 amylomaltase; acts to release glucose from maltodextrins YP_001885178.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001885179.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001885180.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_001885181.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_001885182.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF02702 YP_001885183.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885184.1 identified by match to protein family HMM PF05175; match to protein family HMM PF06325 YP_001885185.1 Involved in the metabolism of aromatic amino acids YP_001885186.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001885187.1 identified by glimmer YP_001885188.1 identified by match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001885189.1 identified by match to protein family HMM PF02811 YP_001885190.1 identified by match to protein family HMM PF00583 YP_001885191.1 identified by match to protein family HMM PF00334 YP_001885192.1 identified by match to protein family HMM PF01547 YP_001885193.1 identified by match to protein family HMM PF00528 YP_001885194.1 identified by match to protein family HMM PF00528 YP_001885195.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_001885196.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_001885198.1 identified by glimmer YP_001885199.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_001885200.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_001885201.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_001885202.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_001885203.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_001885204.1 identified by match to protein family HMM PF01909 YP_001885205.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001885206.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_001885207.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_001885208.1 identified by glimmer YP_001885209.1 identified by glimmer YP_001885210.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_001885211.1 identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001885212.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001885213.1 identified by match to protein family HMM PF03435 YP_001885214.1 identified by match to protein family HMM PF00278; match to protein family HMM TIGR01047 YP_001885215.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_001885216.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_001885217.1 identified by match to protein family HMM PF00465; match to protein family HMM PF01761 YP_001885218.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001885219.1 identified by match to protein family HMM PF04055 YP_001885221.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001885222.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001885223.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001885224.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001885225.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001885227.1 identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; match to protein family HMM TIGR01129 YP_001885228.1 identified by match to protein family HMM PF01368 YP_001885229.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001885230.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_001885231.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001885232.1 identified by match to protein family HMM PF00753 YP_001885233.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001885234.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001885235.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001885237.1 identified by match to protein family HMM PF04474 YP_001885239.1 identified by match to protein family HMM PF01022; match to protein family HMM PF02579; match to protein family HMM PF08279 YP_001885240.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001885241.1 identified by match to protein family HMM PF04309 YP_001885242.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001885243.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324 YP_001885244.1 identified by match to protein family HMM PF07992 YP_001885245.1 identified by match to protein family HMM PF07892 YP_001885246.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001885247.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_001885248.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317 YP_001885249.1 identified by match to protein family HMM PF00324 YP_001885250.1 identified by glimmer YP_001885252.1 identified by match to protein family HMM PF02559 YP_001885253.1 identified by glimmer YP_001885254.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001885255.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001885257.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_001885258.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001885259.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001885260.1 identified by match to protein family HMM PF01594 YP_001885261.1 identified by glimmer YP_001885263.1 identified by glimmer YP_001885264.1 identified by glimmer YP_001885266.1 identified by match to protein family HMM PF00015; match to protein family HMM PF02743 YP_001885267.1 identified by match to protein family HMM PF00085 YP_001885268.1 identified by glimmer YP_001885269.1 catalyzes the formation of 2-oxobutanoate from L-threonine YP_001885270.1 identified by match to protein family HMM PF06738 YP_001885272.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001885273.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367 YP_001885274.1 identified by glimmer YP_001885275.1 identified by match to protein family HMM PF00005 YP_001885276.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001885278.1 identified by glimmer YP_001885279.1 identified by glimmer YP_001885281.1 identified by match to protein family HMM PF04266; match to protein family HMM PF06171 YP_001885282.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001885283.1 identified by match to protein family HMM PF00149 YP_001885284.1 identified by match to protein family HMM PF01244 YP_001885285.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001885286.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001885287.1 identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552 YP_001885288.1 identified by match to protein family HMM PF01957 YP_001885289.1 identified by match to protein family HMM PF01145 YP_001885290.1 identified by match to protein family HMM PF00375 YP_001885292.1 identified by match to protein family HMM PF01554 YP_001885293.1 identified by glimmer YP_001885294.1 identified by match to protein family HMM PF00376 YP_001885295.1 identified by match to protein family HMM PF00497 YP_001885296.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001885297.1 identified by match to protein family HMM PF00005 YP_001885299.1 identified by match to protein family HMM PF00654 YP_001885300.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857 YP_001885301.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_001885302.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001885303.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001885304.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001885305.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639 YP_001885306.1 involved in de novo purine biosynthesis YP_001885307.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001885311.1 identified by glimmer YP_001885312.1 identified by match to protein family HMM PF02629 YP_001885313.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_001885314.1 identified by match to protein family HMM PF00376 YP_001885315.1 identified by match to protein family HMM PF04397 YP_001885317.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001885318.1 identified by match to protein family HMM PF00440 YP_001885319.1 identified by match to protein family HMM PF02687 YP_001885320.1 identified by match to protein family HMM PF00005 YP_001885322.1 identified by match to protein family HMM PF00005 YP_001885323.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885324.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885328.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885329.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001885332.1 cytoplasmic membrane protein that functions as a monomer; catalyzes the active transport of sugar-phosphates such as glucose-6-phosphate with the obligatory exchange of inorganic phosphate or organophosphate YP_001885333.1 identified by match to protein family HMM PF01794 YP_001885336.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001885337.1 identified by match to protein family HMM PF01047 YP_001885339.1 identified by match to protein family HMM PF09335 YP_001885340.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF08238 YP_001885343.1 identified by match to protein family HMM PF01047 YP_001885344.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747 YP_001885345.1 identified by match to protein family HMM PF00550 YP_001885346.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151 YP_001885347.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_001885348.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001885349.1 identified by match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150 YP_001885350.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531 YP_001885351.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001885352.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514 YP_001885353.1 identified by match to protein family HMM TIGR00515 YP_001885354.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001885356.1 identified by match to protein family HMM PF09021 YP_001885357.1 identified by glimmer YP_001885358.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_001885359.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311 YP_001885361.1 identified by match to protein family HMM PF00994 YP_001885362.1 identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581 YP_001885363.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_001885364.1 identified by match to protein family HMM PF03473 YP_001885365.1 identified by match to protein family HMM PF00004 YP_001885366.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_001885367.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402 YP_001885368.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR03419 YP_001885369.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001885370.1 identified by match to protein family HMM PF05239 YP_001885371.1 identified by match to protein family HMM PF01594 YP_001885372.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001885373.1 identified by match to protein family HMM PF06135 YP_001885374.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001885375.1 identified by match to protein family HMM PF06949 YP_001885376.1 identified by match to protein family HMM PF01475 YP_001885377.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001885378.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_001885379.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_001885380.1 identified by match to protein family HMM PF01596; match to protein family HMM PF05175; match to protein family HMM PF08241 YP_001885381.1 identified by match to protein family HMM PF01136 YP_001885382.1 identified by match to protein family HMM PF00905 YP_001885383.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_001885384.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420 YP_001885385.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_001885386.1 identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065 YP_001885387.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_001885388.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001885389.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001885390.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001885391.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_001885392.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_001885393.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885394.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001885395.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_001885396.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_001885397.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_001885398.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00972 YP_001885399.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_001885400.1 identified by match to protein family HMM PF04459 YP_001885401.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001885402.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001885403.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_001885405.1 identified by match to protein family HMM PF00710 YP_001885406.1 identified by match to protein family HMM PF00860 YP_001885407.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_001885408.1 identified by match to protein family HMM PF04025 YP_001885409.1 Essential for recycling GMP and indirectly, cGMP YP_001885410.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690 YP_001885411.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_001885412.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001885413.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001885414.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_001885415.1 identified by match to protein family HMM PF04298 YP_001885416.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_001885417.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001885418.1 identified by match to protein family HMM PF00481 YP_001885419.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_001885420.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001885421.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001885422.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378 YP_001885423.1 required for 70S ribosome assembly YP_001885424.1 identified by match to protein family HMM PF03780 YP_001885425.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_001885426.1 catalyzes branch migration in Holliday junction intermediates YP_001885427.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_001885428.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001885430.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_001885431.1 identified by match to protein family HMM PF05636 YP_001885432.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001885433.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001885434.1 identified by match to protein family HMM PF02620 YP_001885435.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001885436.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001885437.1 carries the fatty acid chain in fatty acid biosynthesis YP_001885438.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001885439.1 identified by match to protein family HMM PF04055 YP_001885440.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168 YP_001885441.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_001885442.1 identified by match to protein family HMM PF04297; match to protein family HMM PF04967 YP_001885443.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_001885444.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001885446.1 Essential for efficient processing of 16S rRNA YP_001885447.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001885448.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001885449.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001885450.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001885451.1 identified by match to protein family HMM PF02021 YP_001885452.1 identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368 YP_001885453.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_001885454.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001885455.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001885456.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001885457.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001885458.1 Catalyzes the phosphorylation of UMP to UDP YP_001885459.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001885460.1 identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055 YP_001885461.1 identified by match to protein family HMM PF01148 YP_001885462.1 identified by match to protein family HMM PF01594 YP_001885463.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001885464.2 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_001885465.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001885466.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001885467.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001885468.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001885469.1 identified by match to protein family HMM PF04296 YP_001885470.1 identified by match to protein family HMM PF01248 YP_001885471.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001885472.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001885473.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001885474.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001885475.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001885476.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001885477.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726 YP_001885478.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001885479.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_001885480.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_001885481.1 identified by match to protein family HMM PF00574; match to protein family HMM PF01343 YP_001885482.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_001885483.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125 YP_001885484.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_001885485.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001885486.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001885487.1 identified by match to protein family HMM PF04232 YP_001885488.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_001885489.1 identified by glimmer YP_001885490.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001885491.1 identified by glimmer YP_001885493.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_001885494.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001885495.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506 YP_001885496.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001885497.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001885498.1 identified by match to protein family HMM PF00465 YP_001885499.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001885500.1 identified by match to protein family HMM PF00294 YP_001885501.1 identified by match to protein family HMM PF06845 YP_001885502.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001885503.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001885504.1 identified by match to protein family HMM PF01261 YP_001885505.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function YP_001885507.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001885508.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_001885509.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_001885510.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001885511.1 identified by glimmer YP_001885512.1 identified by match to protein family HMM PF00293 YP_001885513.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001885515.1 identified by glimmer YP_001885516.1 identified by match to protein family HMM PF00465; match to protein family HMM PF01761 YP_001885518.1 identified by glimmer YP_001885520.1 identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970 YP_001885522.1 identified by match to protein family HMM PF00149 YP_001885523.1 identified by match to protein family HMM PF00560; match to protein family HMM PF01473 YP_001885524.1 identified by match to protein family HMM PF05343 YP_001885527.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885528.1 identified by glimmer YP_001885529.1 identified by match to protein family HMM PF02492 YP_001885532.1 identified by match to protein family HMM PF03773 YP_001885533.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001885535.1 identified by match to protein family HMM PF00892 YP_001885536.1 identified by glimmer YP_001885537.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001885538.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; match to protein family HMM PF04851 YP_001885539.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500 YP_001885540.1 identified by glimmer YP_001885541.1 identified by glimmer YP_001885542.1 identified by match to protein family HMM PF08937 YP_001885544.1 identified by glimmer YP_001885545.1 identified by match to protein family HMM PF02223 YP_001885547.1 identified by match to protein family HMM PF00303 YP_001885548.1 identified by match to protein family HMM PF08937 YP_001885552.1 identified by glimmer YP_001885559.1 identified by match to protein family HMM PF01012 YP_001885560.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_001885561.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03600; match to protein family HMM TIGR00795 YP_001885562.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_001885563.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001885564.1 identified by match to protein family HMM PF00005 YP_001885565.1 identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198 YP_001885566.1 identified by glimmer YP_001885567.1 identified by match to protein family HMM PF07992 YP_001885568.1 identified by match to protein family HMM PF01266; match to protein family HMM PF07992 YP_001885569.1 identified by match to protein family HMM PF01047 YP_001885570.1 identified by match to protein family HMM PF00005 YP_001885571.1 identified by match to protein family HMM PF03610; match to protein family HMM PF03830; match to protein family HMM TIGR00824 YP_001885572.1 identified by match to protein family HMM PF03609 YP_001885573.1 identified by match to protein family HMM PF03613; match to protein family HMM TIGR00828 YP_001885574.1 identified by match to protein family HMM PF06115 YP_001885576.1 identified by match to protein family HMM PF00704 YP_001885577.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885578.1 identified by match to protein family HMM PF02518 YP_001885579.1 identified by match to protein family HMM PF02687 YP_001885580.1 identified by match to protein family HMM PF00005 YP_001885582.1 identified by glimmer YP_001885583.1 identified by glimmer YP_001885584.1 identified by match to protein family HMM PF00144 YP_001885585.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885586.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001885587.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001885588.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581 YP_001885589.1 identified by match to protein family HMM PF00005 YP_001885591.1 identified by match to protein family HMM PF09335 YP_001885592.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178 YP_001885593.1 functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP YP_001885596.1 identified by match to protein family HMM PF06172 YP_001885597.1 identified by match to protein family HMM PF00324 YP_001885598.1 identified by match to protein family HMM PF01633; match to protein family HMM PF01636 YP_001885599.1 identified by glimmer YP_001885600.1 identified by match to protein family HMM PF01497 YP_001885601.1 identified by match to protein family HMM PF01032 YP_001885602.1 identified by match to protein family HMM PF00005 YP_001885603.1 identified by match to protein family HMM PF01902; match to protein family HMM TIGR00290 YP_001885604.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885605.1 identified by match to protein family HMM PF00005 YP_001885606.1 identified by glimmer YP_001885607.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885609.1 identified by match to protein family HMM PF01047 YP_001885610.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885612.1 identified by match to protein family HMM PF02696 YP_001885614.1 identified by match to protein family HMM PF09515 YP_001885615.1 identified by match to protein family HMM PF03070 YP_001885616.1 identified by match to protein family HMM PF06354 YP_001885617.1 identified by match to protein family HMM PF00226 YP_001885618.1 identified by match to protein family HMM PF07690 YP_001885619.1 identified by match to protein family HMM PF07690 YP_001885620.1 identified by match to protein family HMM PF00005 YP_001885621.1 identified by glimmer YP_001885622.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001885623.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524 YP_001885624.1 identified by match to protein family HMM PF00753 YP_001885628.1 identified by match to protein family HMM PF00132 YP_001885629.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001885630.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001885631.1 identified by match to protein family HMM PF00753 YP_001885632.1 identified by match to protein family HMM PF00324 YP_001885633.1 identified by glimmer YP_001885634.1 identified by match to protein family HMM PF00376 YP_001885635.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001885636.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001885637.1 identified by glimmer YP_001885638.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001885639.1 identified by match to protein family HMM PF00728 YP_001885640.1 identified by match to protein family HMM PF00465 YP_001885641.1 identified by match to protein family HMM PF00376 YP_001885644.1 identified by match to protein family HMM PF00936 YP_001885647.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901 YP_001885648.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001885649.1 identified by match to protein family HMM PF00936 YP_001885652.1 identified by match to protein family HMM TIGR02529 YP_001885654.1 identified by match to protein family HMM PF03319 YP_001885655.1 identified by match to protein family HMM PF01512 YP_001885656.1 identified by match to protein family HMM PF00936 YP_001885657.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249 YP_001885658.1 identified by match to protein family HMM PF00936 YP_001885659.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR02518 YP_001885660.1 identified by match to protein family HMM PF06130 YP_001885661.1 identified by match to protein family HMM PF00936 YP_001885662.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001885663.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001885664.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073 YP_001885665.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001885666.1 identified by match to protein family HMM PF01155 YP_001885667.1 identified by match to protein family HMM PF01497 YP_001885668.1 identified by match to protein family HMM PF01032 YP_001885669.1 identified by match to protein family HMM PF00005 YP_001885670.1 identified by glimmer YP_001885671.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001885675.1 identified by match to protein family HMM PF02557 YP_001885676.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885677.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885678.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_001885679.1 identified by glimmer YP_001885680.1 identified by match to protein family HMM PF01757 YP_001885682.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885683.1 identified by glimmer YP_001885685.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001885686.1 identified by glimmer YP_001885688.1 identified by glimmer YP_001885689.1 identified by glimmer YP_001885690.1 identified by glimmer YP_001885691.1 identified by match to protein family HMM PF02056 YP_001885692.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610 YP_001885693.1 identified by match to protein family HMM PF02302 YP_001885694.1 identified by match to protein family HMM PF02255 YP_001885695.1 identified by match to protein family HMM PF01869 YP_001885696.1 identified by match to protein family HMM PF05913 YP_001885697.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001885698.1 identified by match to protein family HMM PF02588 YP_001885699.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885700.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001885702.1 identified by glimmer YP_001885703.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_001885704.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001885705.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001885706.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001885707.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_001885708.1 identified by match to protein family HMM PF00923 YP_001885709.1 identified by match to protein family HMM PF00313 YP_001885710.1 identified by match to protein family HMM PF01554 YP_001885712.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995 YP_001885713.1 identified by match to protein family HMM PF00232 YP_001885714.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001885716.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001885717.1 identified by glimmer YP_001885719.1 identified by match to protein family HMM PF01522 YP_001885720.1 identified by glimmer YP_001885721.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_001885722.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_001885723.1 identified by match to protein family HMM PF00005 YP_001885724.1 identified by match to protein family HMM PF02653 YP_001885725.1 identified by match to protein family HMM PF00532 YP_001885726.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001885727.1 identified by match to protein family HMM PF06094 YP_001885728.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_001885729.1 identified by match to protein family HMM PF06166 YP_001885730.1 identified by match to protein family HMM PF06149 YP_001885731.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_001885732.1 identified by match to protein family HMM PF01041 YP_001885733.1 identified by match to protein family HMM PF02348 YP_001885734.1 identified by glimmer YP_001885736.1 identified by glimmer YP_001885737.1 identified by match to protein family HMM PF01047 YP_001885738.1 identified by match to protein family HMM PF02525 YP_001885739.1 identified by glimmer YP_001885740.1 identified by match to protein family HMM PF01973 YP_001885741.1 identified by glimmer YP_001885742.1 identified by glimmer YP_001885743.1 identified by glimmer YP_001885744.1 identified by glimmer YP_001885745.1 identified by match to protein family HMM PF00483; match to protein family HMM PF00571 YP_001885746.1 identified by match to protein family HMM PF00583 YP_001885747.1 identified by match to protein family HMM PF02350 YP_001885748.1 identified by match to protein family HMM PF02585 YP_001885749.1 identified by glimmer YP_001885750.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666 YP_001885751.1 identified by match to protein family HMM PF04657 YP_001885754.1 identified by match to protein family HMM PF00027 YP_001885755.1 identified by match to protein family HMM PF01699 YP_001885756.1 identified by match to protein family HMM PF04055 YP_001885757.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_001885759.1 identified by glimmer YP_001885760.1 identified by glimmer YP_001885761.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883 YP_001885762.1 identified by match to protein family HMM PF00375 YP_001885763.1 identified by match to protein family HMM PF04607 YP_001885764.1 identified by match to protein family HMM PF03446 YP_001885765.1 identified by match to protein family HMM PF00291 YP_001885767.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_001885768.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_001885770.1 identified by match to protein family HMM PF04456 YP_001885771.1 identified by match to protein family HMM PF06081 YP_001885772.1 identified by glimmer YP_001885773.1 identified by match to protein family HMM PF00392 YP_001885774.1 identified by match to protein family HMM PF01048; match to protein family HMM TIGR01718 YP_001885775.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_001885776.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_001885777.1 identified by match to protein family HMM PF00456 YP_001885779.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001885780.1 identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875 YP_001885781.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001885783.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885784.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_001885785.1 identified by glimmer YP_001885787.1 identified by glimmer YP_001885788.1 identified by match to protein family HMM PF01926 YP_001885789.1 identified by match to protein family HMM PF01041 YP_001885790.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001885792.1 identified by glimmer YP_001885793.1 identified by glimmer YP_001885794.1 identified by glimmer YP_001885795.1 identified by match to protein family HMM PF00226 YP_001885796.1 identified by glimmer YP_001885798.1 identified by match to protein family HMM PF07228 YP_001885802.1 identified by glimmer YP_001885803.1 identified by glimmer YP_001885804.1 identified by glimmer YP_001885805.1 identified by glimmer YP_001885806.1 identified by glimmer YP_001885807.1 identified by glimmer YP_001885808.1 identified by glimmer YP_001885809.1 identified by glimmer YP_001885810.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_001885811.1 identified by glimmer YP_001885812.1 identified by glimmer YP_001885817.1 identified by glimmer YP_001885818.1 identified by match to protein family HMM PF09346 YP_001885820.1 identified by glimmer YP_001885825.1 identified by glimmer YP_001885826.1 identified by glimmer YP_001885827.1 identified by glimmer YP_001885831.1 identified by glimmer YP_001885832.1 identified by match to protein family HMM PF00805 YP_001885833.1 identified by glimmer YP_001885835.1 identified by glimmer YP_001885836.1 identified by glimmer YP_001885838.1 identified by glimmer YP_001885839.1 identified by glimmer YP_001885840.1 identified by glimmer YP_001885841.1 identified by glimmer YP_001885843.1 identified by glimmer YP_001885844.1 identified by glimmer YP_001885846.1 identified by glimmer YP_001885847.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06803 YP_001885849.1 identified by glimmer YP_001885850.1 identified by match to protein family HMM PF00012 YP_001885851.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001885852.1 identified by match to protein family HMM PF00293 YP_001885854.1 identified by match to protein family HMM PF04095 YP_001885855.1 identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464 YP_001885857.1 identified by match to protein family HMM PF00082 YP_001885858.1 identified by match to protein family HMM PF00082 YP_001885859.1 identified by match to protein family HMM PF00171 YP_001885860.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_001885861.1 identified by match to protein family HMM PF00293 YP_001885862.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885865.1 identified by glimmer YP_001885866.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082 YP_001885867.1 identified by match to protein family HMM PF00005 YP_001885869.1 identified by glimmer YP_001885870.1 identified by glimmer YP_001885871.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001885872.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001885873.1 identified by match to protein family HMM PF01743 YP_001885875.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885876.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885878.1 identified by glimmer YP_001885879.1 identified by glimmer YP_001885880.1 identified by match to protein family HMM PF04307 YP_001885882.1 decatenates replicating daughter chromosomes YP_001885883.1 identified by glimmer YP_001885884.1 identified by glimmer YP_001885885.1 identified by glimmer YP_001885886.1 identified by glimmer YP_001885887.1 identified by match to protein family HMM PF00929 YP_001885888.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885889.1 identified by match to protein family HMM PF07690 YP_001885890.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_001885891.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001885892.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001885893.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_001885894.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02104 YP_001885895.1 identified by match to protein family HMM PF01979 YP_001885896.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001885897.1 identified by match to protein family HMM PF00896; match to protein family HMM TIGR01697; match to protein family HMM TIGR01700 YP_001885898.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated YP_001885899.1 identified by match to protein family HMM PF00395 YP_001885900.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906 YP_001885901.1 identified by match to protein family HMM PF04607 YP_001885902.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM TIGR01179 YP_001885903.1 identified by match to protein family HMM PF06177 YP_001885904.1 identified by glimmer YP_001885905.1 identified by glimmer YP_001885908.1 identified by glimmer YP_001885909.1 identified by match to protein family HMM PF00535 YP_001885911.1 ACT domain-containing protein YP_001885912.1 identified by match to protein family HMM PF05167 YP_001885913.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001885914.1 identified by match to protein family HMM PF00196; match to protein family HMM PF08281 YP_001885916.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001885917.1 identified by match to protein family HMM PF02901 YP_001885919.1 identified by match to protein family HMM PF07690 YP_001885920.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001885921.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001885922.1 identified by glimmer YP_001885923.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001885924.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001885925.1 identified by glimmer YP_001885926.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_001885928.1 identified by match to protein family HMM PF00561 YP_001885929.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231 YP_001885931.1 identified by match to protein family HMM PF00375 YP_001885933.1 identified by match to protein family HMM PF00465 YP_001885934.1 identified by match to protein family HMM PF00936 YP_001885935.1 identified by match to protein family HMM PF00936 YP_001885936.1 identified by match to protein family HMM PF00936 YP_001885937.1 identified by match to protein family HMM PF00936 YP_001885938.1 identified by match to protein family HMM PF06130 YP_001885939.1 identified by match to protein family HMM TIGR02529 YP_001885941.1 identified by match to protein family HMM PF03319 YP_001885942.1 identified by match to protein family HMM PF00171 YP_001885943.1 identified by match to protein family HMM PF01512 YP_001885944.1 identified by match to protein family HMM PF00936 YP_001885945.1 identified by match to protein family HMM PF02272; match to protein family HMM PF07973 YP_001885949.1 identified by glimmer YP_001885950.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885951.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885952.1 identified by match to protein family HMM PF03553 YP_001885953.2 identified by match to protein family HMM PF05057 YP_001885954.1 identified by match to protein family HMM PF05257 YP_001885955.1 identified by match to protein family HMM PF00583 YP_001885956.1 identified by match to protein family HMM PF01966 YP_001885957.1 identified by glimmer YP_001885958.1 identified by glimmer YP_001885959.1 identified by glimmer YP_001885960.1 identified by glimmer YP_001885962.1 identified by match to protein family HMM PF02698 YP_001885963.1 identified by match to protein family HMM PF03733 YP_001885964.1 identified by glimmer YP_001885966.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001885968.1 identified by match to protein family HMM PF00005 YP_001885970.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001885971.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001885972.1 identified by match to protein family HMM PF05857 YP_001885974.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_001885975.1 identified by match to protein family HMM PF04023 YP_001885976.1 identified by match to protein family HMM PF01325 YP_001885977.1 identified by match to protein family HMM PF01473 YP_001885979.1 identified by glimmer YP_001885981.1 identified by match to protein family HMM PF00686; match to protein family HMM PF01373 YP_001885983.1 identified by match to protein family HMM PF06571 YP_001885985.1 identified by match to protein family HMM PF02811 YP_001885986.1 identified by match to protein family HMM PF03734 YP_001885987.1 identified by match to protein family HMM PF00293 YP_001885989.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001885990.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001885991.1 identified by glimmer YP_001885992.1 identified by glimmer YP_001885993.1 identified by match to protein family HMM PF02133; match to protein family HMM TIGR02358 YP_001885994.1 identified by match to protein family HMM PF00805 YP_001885995.1 identified by match to protein family HMM PF07866 YP_001885996.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001885997.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001885998.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001885999.1 identified by match to protein family HMM PF00583 YP_001886000.1 identified by glimmer YP_001886001.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001886002.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_001886003.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001886007.1 Represses a number of genes involved in the response to DNA damage YP_001886008.1 identified by match to protein family HMM PF06838 YP_001886009.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_001886010.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001886011.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001886012.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_001886013.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_001886014.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_001886015.1 identified by glimmer YP_001886016.1 This protein performs the mismatch recognition step during the DNA repair process YP_001886017.1 identified by match to protein family HMM PF04055 YP_001886018.1 identified by match to protein family HMM PF02308 YP_001886019.1 identified by match to protein family HMM PF03009 YP_001886020.1 identified by match to protein family HMM PF02308 YP_001886021.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_001886023.1 identified by match to protein family HMM PF00005 YP_001886025.1 identified by match to protein family HMM PF01593; match to protein family HMM TIGR02734 YP_001886028.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_001886029.1 identified by match to protein family HMM PF00293 YP_001886030.1 identified by match to protein family HMM PF00753 YP_001886031.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_001886033.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494 YP_001886034.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01774 YP_001886035.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001886036.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001886037.1 identified by match to protein family HMM PF00248 YP_001886038.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001886039.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR02290 YP_001886040.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481 YP_001886041.1 identified by match to protein family HMM PF08238 YP_001886044.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_001886045.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM TIGR00229 YP_001886046.1 identified by match to protein family HMM PF09719; match to protein family HMM TIGR01909 YP_001886047.1 identified by match to protein family HMM PF00324 YP_001886048.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001886050.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_001886051.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001886052.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001886053.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001886054.1 identified by match to protein family HMM PF03748 YP_001886055.1 identified by match to protein family HMM PF00005 YP_001886056.1 identified by match to protein family HMM PF02687 YP_001886057.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001886058.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001886059.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001886060.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400 YP_001886061.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_001886062.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001886063.1 identified by match to protein family HMM PF00515 YP_001886065.1 identified by glimmer YP_001886066.1 identified by glimmer YP_001886068.1 identified by match to protein family HMM PF07690 YP_001886069.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001886070.1 identified by glimmer YP_001886071.1 identified by glimmer YP_001886073.1 identified by glimmer YP_001886074.1 identified by glimmer YP_001886076.1 identified by glimmer YP_001886077.1 identified by match to protein family HMM PF00753 YP_001886078.1 identified by glimmer YP_001886079.1 identified by match to protein family HMM PF01473 YP_001886081.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001886085.1 identified by glimmer YP_001886086.1 identified by glimmer YP_001886088.1 identified by glimmer YP_001886091.1 identified by match to protein family HMM PF04865 YP_001886093.1 identified by glimmer YP_001886094.1 identified by match to protein family HMM PF00877; match to protein family HMM PF01464 YP_001886097.1 identified by glimmer YP_001886099.1 identified by glimmer YP_001886100.1 identified by glimmer YP_001886102.1 identified by glimmer YP_001886104.1 identified by glimmer YP_001886108.1 identified by glimmer YP_001886109.1 identified by glimmer YP_001886111.1 identified by glimmer YP_001886113.1 identified by match to protein family HMM PF05133 YP_001886115.1 identified by glimmer YP_001886116.1 identified by match to protein family HMM PF00239 YP_001886118.1 identified by glimmer YP_001886119.1 identified by glimmer YP_001886120.1 identified by glimmer YP_001886123.1 identified by glimmer YP_001886125.1 identified by glimmer YP_001886126.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001886130.1 identified by glimmer YP_001886131.1 identified by glimmer YP_001886132.1 identified by glimmer YP_001886134.1 identified by glimmer YP_001886135.1 identified by match to protein family HMM PF04404 YP_001886136.1 identified by glimmer YP_001886138.1 identified by glimmer YP_001886139.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_001886140.1 identified by glimmer YP_001886141.1 identified by glimmer YP_001886144.1 identified by match to protein family HMM PF01381 YP_001886145.1 identified by match to protein family HMM PF01381 YP_001886146.1 identified by match to protein family HMM PF00589 YP_001886148.1 identified by match to protein family HMM PF01381 YP_001886149.1 identified by match to protein family HMM PF08000 YP_001886150.1 identified by match to protein family HMM PF04256 YP_001886152.1 identified by glimmer YP_001886153.1 identified by match to protein family HMM PF00892 YP_001886154.1 identified by match to protein family HMM PF03372 YP_001886156.1 identified by match to protein family HMM PF00078 YP_001886157.1 identified by match to protein family HMM PF04434 YP_001886159.1 identified by glimmer YP_001886160.1 identified by match to protein family HMM PF00860 YP_001886161.1 identified by glimmer YP_001886162.1 identified by glimmer YP_001886163.1 identified by match to protein family HMM PF05569 YP_001886164.1 identified by match to protein family HMM PF03965 YP_001886165.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001886166.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001886167.1 identified by match to protein family HMM PF00580 YP_001886168.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_001886169.1 identified by match to protein family HMM PF00027 YP_001886170.1 identified by match to protein family HMM PF00440 YP_001886171.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992 YP_001886172.1 identified by match to protein family HMM PF00173 YP_001886173.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_001886174.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_001886175.1 identified by match to protein family HMM PF00581 YP_001886176.1 identified by glimmer YP_001886180.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_001886181.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_001886182.1 identified by match to protein family HMM PF01144 YP_001886183.1 identified by match to protein family HMM PF00378 YP_001886184.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001886186.1 identified by match to protein family HMM PF02915 YP_001886187.1 identified by match to protein family HMM PF07081 YP_001886188.1 identified by match to protein family HMM PF00132 YP_001886189.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311; match to protein family HMM PF07883 YP_001886192.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain YP_001886193.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001886194.1 identified by match to protein family HMM PF01924 YP_001886195.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_001886196.1 identified by match to protein family HMM PF01455; match to protein family HMM TIGR00074 YP_001886197.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_001886198.1 identified by match to protein family HMM PF01155 YP_001886199.1 identified by match to protein family HMM TIGR00072 YP_001886200.1 identified by match to protein family HMM PF00374 YP_001886201.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391 YP_001886202.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001886203.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00881 YP_001886204.1 identified by glimmer YP_001886205.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205 YP_001886206.1 identified by glimmer YP_001886207.1 identified by match to protein family HMM PF00005 YP_001886209.1 identified by match to protein family HMM PF00929 YP_001886210.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001886212.1 3'-5' exonuclease of DNA polymerase III YP_001886213.1 identified by match to protein family HMM PF07656 YP_001886214.1 identified by glimmer YP_001886215.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_001886216.1 identified by match to protein family HMM PF01547 YP_001886217.1 identified by match to protein family HMM PF00528 YP_001886218.1 identified by match to protein family HMM PF00528 YP_001886219.1 identified by match to protein family HMM PF00356 YP_001886221.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_001886222.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454 YP_001886223.1 identified by match to protein family HMM PF01891 YP_001886224.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220 YP_001886225.1 identified by match to protein family HMM PF09370 YP_001886226.1 identified by match to protein family HMM PF06792 YP_001886227.1 identified by match to protein family HMM PF00165; match to protein family HMM PF09370 YP_001886228.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282 YP_001886229.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405 YP_001886230.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001886231.1 identified by glimmer YP_001886232.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753 YP_001886233.1 identified by match to protein family HMM PF00171 YP_001886234.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970 YP_001886235.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753 YP_001886236.1 identified by match to protein family HMM PF00301 YP_001886238.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001886239.1 identified by glimmer YP_001886240.1 identified by match to protein family HMM PF03572 YP_001886241.1 identified by match to protein family HMM PF00756 YP_001886242.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_001886244.1 identified by match to protein family HMM PF07690 YP_001886245.1 identified by match to protein family HMM PF00480 YP_001886246.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_001886247.1 identified by match to protein family HMM PF00128 YP_001886249.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001886250.1 identified by match to protein family HMM PF04041 YP_001886251.1 identified by match to protein family HMM PF00528 YP_001886252.1 identified by match to protein family HMM PF00528 YP_001886253.1 identified by match to protein family HMM PF01547 YP_001886254.1 identified by match to protein family HMM PF00293 YP_001886255.1 identified by glimmer YP_001886257.1 identified by match to protein family HMM PF00903 YP_001886258.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001886259.1 identified by match to protein family HMM PF01473 YP_001886261.1 identified by match to protein family HMM PF07299 YP_001886262.1 identified by glimmer YP_001886263.1 identified by glimmer YP_001886264.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001886265.1 identified by match to protein family HMM PF08011 YP_001886266.1 identified by glimmer YP_001886267.1 identified by glimmer YP_001886270.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497 YP_001886271.1 identified by match to protein family HMM PF01420 YP_001886272.1 identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348 YP_001886275.1 identified by match to protein family HMM PF04892 YP_001886277.1 identified by glimmer YP_001886278.1 identified by match to protein family HMM PF00144 YP_001886281.1 identified by glimmer YP_001886282.1 identified by match to protein family HMM PF02255 YP_001886283.1 identified by match to protein family HMM PF02056 YP_001886284.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_001886285.1 identified by match to protein family HMM PF02302 YP_001886286.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_001886287.1 identified by match to protein family HMM PF00465 YP_001886289.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_001886291.1 identified by match to protein family HMM PF08841 YP_001886292.1 identified by match to protein family HMM PF02287 YP_001886293.1 identified by match to protein family HMM PF02288 YP_001886294.1 identified by match to protein family HMM PF02286 YP_001886295.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00165 YP_001886296.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580 YP_001886297.1 identified by match to protein family HMM PF01473; match to protein family HMM PF07554 YP_001886298.1 identified by match to protein family HMM PF04326 YP_001886299.1 identified by match to protein family HMM PF01909 YP_001886300.1 identified by match to protein family HMM PF08780; match to protein family HMM TIGR01987 YP_001886301.1 identified by match to protein family HMM PF00248 YP_001886302.1 identified by match to protein family HMM PF00005 YP_001886303.1 identified by match to protein family HMM PF01032 YP_001886304.1 identified by match to protein family HMM PF01032 YP_001886305.1 identified by match to protein family HMM PF01497 YP_001886306.1 identified by match to protein family HMM PF01207 YP_001886307.1 identified by match to protein family HMM PF00882 YP_001886308.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462 YP_001886310.1 identified by glimmer YP_001886312.1 identified by glimmer YP_001886313.1 identified by match to protein family HMM PF00128 YP_001886314.1 identified by match to protein family HMM PF01074; match to protein family HMM PF07748 YP_001886315.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_001886316.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_001886317.1 identified by match to protein family HMM PF00302 YP_001886318.1 identified by glimmer YP_001886319.1 identified by match to protein family HMM PF00561 YP_001886321.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_001886322.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_001886323.1 identified by match to protein family HMM PF00171 YP_001886324.1 converts acetoacetate to acetone and carbon dioxide YP_001886325.1 identified by glimmer YP_001886326.1 identified by glimmer YP_001886327.1 identified by match to protein family HMM PF00857 YP_001886328.1 identified by match to protein family HMM PF04229 YP_001886329.1 identified by match to protein family HMM PF00583 YP_001886331.1 identified by glimmer YP_001886333.1 identified by glimmer YP_001886334.1 identified by match to protein family HMM PF00583 YP_001886335.1 identified by glimmer YP_001886336.1 identified by match to protein family HMM PF00583 YP_001886338.1 identified by glimmer YP_001886339.1 identified by glimmer YP_001886340.1 identified by glimmer YP_001886341.1 identified by match to protein family HMM PF00149 YP_001886342.1 identified by glimmer YP_001886343.1 identified by match to protein family HMM PF05569 YP_001886344.1 identified by match to protein family HMM PF03965 YP_001886345.1 identified by match to protein family HMM PF04536 YP_001886346.1 identified by match to protein family HMM PF01381 YP_001886347.1 identified by glimmer YP_001886348.1 identified by glimmer YP_001886349.1 identified by match to protein family HMM PF00857 YP_001886352.1 identified by match to protein family HMM PF00583 YP_001886353.1 identified by match to protein family HMM PF00037 YP_001886354.1 identified by match to protein family HMM PF00132 YP_001886355.1 identified by match to protein family HMM PF00302 YP_001886356.1 identified by glimmer YP_001886357.1 identified by match to protein family HMM PF02627 YP_001886360.1 identified by glimmer YP_001886361.1 identified by match to protein family HMM PF00144 YP_001886363.1 identified by match to protein family HMM PF00614; match to protein family HMM PF00686 YP_001886364.1 identified by match to protein family HMM PF00614; match to protein family HMM PF00686 YP_001886367.1 identified by match to protein family HMM PF00583 YP_001886369.1 identified by glimmer YP_001886371.1 identified by glimmer YP_001886373.1 identified by glimmer YP_001886374.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079 YP_001886375.1 identified by match to protein family HMM PF01381 YP_001886376.1 identified by match to protein family HMM PF00583 YP_001886377.1 identified by glimmer YP_001886378.1 identified by glimmer YP_001886379.1 identified by match to protein family HMM PF01022 YP_001886380.1 identified by match to protein family HMM PF07853 YP_001886381.1 identified by match to protein family HMM PF00999 YP_001886382.1 identified by match to protein family HMM PF00805 YP_001886384.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001886386.1 identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001886387.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001886388.1 identified by glimmer YP_001886389.1 identified by glimmer YP_001886390.1 identified by match to protein family HMM PF02525 YP_001886394.1 identified by match to protein family HMM PF00005 YP_001886395.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001886396.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001886400.1 identified by match to protein family HMM PF00005 YP_001886401.1 identified by match to protein family HMM PF01863 YP_001886404.1 identified by match to protein family HMM PF00877 YP_001886406.1 identified by glimmer YP_001886410.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001886411.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001886412.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_001886413.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731 YP_001886414.1 identified by match to protein family HMM PF00271 YP_001886416.1 identified by match to protein family HMM PF01487; match to protein family HMM TIGR01093 YP_001886417.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001886418.1 identified by match to protein family HMM PF03961 YP_001886419.1 identified by glimmer YP_001886420.1 identified by match to protein family HMM PF01473; match to protein family HMM PF05257; match to protein family HMM PF08239 YP_001886421.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001886422.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00254 YP_001886423.1 identified by match to protein family HMM PF01171 YP_001886424.1 identified by glimmer YP_001886426.1 identified by match to protein family HMM PF03749 YP_001886427.1 identified by glimmer YP_001886429.1 identified by match to protein family HMM PF01726 YP_001886430.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001886432.1 identified by glimmer YP_001886433.1 identified by glimmer YP_001886435.1 identified by glimmer YP_001886436.1 identified by match to protein family HMM TIGR01665 YP_001886437.1 identified by match to protein family HMM TIGR01633 YP_001886438.1 identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760 YP_001886439.1 identified by glimmer YP_001886440.1 identified by glimmer YP_001886441.1 identified by glimmer YP_001886447.1 identified by match to protein family HMM PF00574 YP_001886448.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_001886449.1 identified by glimmer YP_001886450.1 identified by match to protein family HMM PF03354 YP_001886452.1 identified by match to protein family HMM PF01844 YP_001886455.1 identified by glimmer YP_001886457.1 identified by match to protein family HMM PF07875 YP_001886459.1 identified by match to protein family HMM PF02915; match to protein family HMM PF05067 YP_001886461.1 identified by glimmer YP_001886462.1 identified by glimmer YP_001886464.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001886465.1 identified by match to protein family HMM PF02195 YP_001886466.1 identified by match to protein family HMM PF01656 YP_001886467.1 identified by match to protein family HMM PF09643 YP_001886468.1 identified by glimmer YP_001886469.1 identified by match to protein family HMM PF08774 YP_001886471.1 identified by glimmer YP_001886473.1 identified by glimmer YP_001886474.1 identified by glimmer YP_001886475.1 identified by glimmer YP_001886476.1 identified by match to protein family HMM PF01381 YP_001886477.1 identified by match to protein family HMM PF07927 YP_001886478.1 identified by match to protein family HMM PF03681 YP_001886479.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_001886481.1 identified by match to protein family HMM PF01451 YP_001886482.1 identified by match to protein family HMM PF01022 YP_001886483.1 identified by match to protein family HMM PF00583 YP_001886485.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_001886486.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001886487.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_001886489.1 identified by match to protein family HMM PF02811 YP_001886490.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001886492.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001886495.1 identified by match to protein family HMM PF00300 YP_001886496.1 identified by similarity to SP:P29166; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512 YP_001886497.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512 YP_001886498.1 identified by match to protein family HMM PF01257 YP_001886499.1 identified by glimmer YP_001886500.1 identified by match to protein family HMM PF00614 YP_001886501.1 identified by match to protein family HMM PF01594 YP_001886502.1 identified by match to protein family HMM PF00561 YP_001886503.1 identified by match to protein family HMM PF00583 YP_001886504.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03222; match to protein family HMM PF03845 YP_001886505.1 identified by match to protein family HMM PF06496 YP_001886506.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_001886507.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_001886508.1 identified by glimmer YP_001886509.1 Heat shock-induced YP_001886510.1 identified by glimmer YP_001886511.1 identified by glimmer YP_001886513.1 identified by glimmer YP_001886515.1 identified by glimmer YP_001886516.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719 YP_001886517.1 identified by match to protein family HMM PF01041 YP_001886518.1 identified by match to protein family HMM PF00535 YP_001886519.1 identified by match to protein family HMM PF01370 YP_001886520.1 identified by match to protein family HMM TIGR01444 YP_001886521.1 identified by match to protein family HMM TIGR01444 YP_001886523.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001886524.1 identified by match to protein family HMM TIGR00441 YP_001886525.1 identified by match to protein family HMM PF03102 YP_001886526.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622 YP_001886527.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_001886528.1 identified by match to protein family HMM PF01593 YP_001886529.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_001886531.1 identified by glimmer YP_001886532.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_001886534.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08455 YP_001886535.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719 YP_001886536.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001886537.1 identified by match to protein family HMM PF01183 YP_001886541.1 identified by match to protein family HMM PF00188 YP_001886542.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176 YP_001886543.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_001886544.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600 YP_001886545.1 identified by match to protein family HMM PF05651 YP_001886548.1 identified by match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_001886550.1 identified by match to protein family HMM PF03883 YP_001886551.1 identified by match to protein family HMM PF00768 YP_001886553.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_001886554.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_001886555.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001886556.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_001886557.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001886558.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_001886559.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001886560.1 identified by glimmer YP_001886561.1 identified by glimmer YP_001886562.1 identified by glimmer YP_001886565.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031 YP_001886566.1 identified by glimmer YP_001886568.1 identified by glimmer YP_001886569.1 identified by glimmer YP_001886570.1 identified by glimmer YP_001886571.1 identified by glimmer YP_001886572.1 identified by match to protein family HMM PF05133 YP_001886574.1 identified by glimmer YP_001886575.1 identified by glimmer YP_001886576.1 identified by glimmer YP_001886581.1 identified by glimmer YP_001886583.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001886584.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_001886585.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_001886586.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_001886587.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001886588.1 identified by match to protein family HMM PF01513 YP_001886589.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_001886590.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001886591.1 identified by match to protein family HMM PF00348 YP_001886593.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001886594.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001886595.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951 YP_001886596.1 identified by match to protein family HMM PF03780 YP_001886598.1 identified by match to protein family HMM TIGR02830 YP_001886599.1 identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_001886600.1 identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_001886601.1 identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_001886602.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_001886603.1 necessary for complete engulfment of forespore YP_001886604.1 identified by match to protein family HMM TIGR02858 YP_001886606.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001886608.1 identified by glimmer YP_001886612.1 identified by glimmer YP_001886613.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001886614.1 identified by match to protein family HMM PF00482 YP_001886615.1 identified by match to protein family HMM PF00437 YP_001886617.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001886618.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_001886619.1 identified by match to protein family HMM PF01170 YP_001886620.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001886621.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001886622.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_001886623.1 identified by match to protein family HMM PF01479 YP_001886624.1 identified by match to protein family HMM PF02325 YP_001886625.1 identified by match to protein family HMM PF04472 YP_001886626.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_001886627.1 identified by match to protein family HMM PF05949 YP_001886628.1 identified by match to protein family HMM PF06947 YP_001886629.1 identified by match to protein family HMM PF05949 YP_001886630.1 identified by match to protein family HMM PF08478 YP_001886631.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_001886632.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001886633.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_001886634.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001886635.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_001886637.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_001886638.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001886639.1 identified by glimmer YP_001886640.1 identified by match to protein family HMM PF03741 YP_001886641.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001886642.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_001886643.1 identified by match to protein family HMM PF04961 YP_001886644.1 identified by match to protein family HMM PF04932 YP_001886645.1 identified by match to protein family HMM PF00534 YP_001886647.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR01695 YP_001886648.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_001886649.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001886650.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_001886651.1 identified by match to protein family HMM PF04463 YP_001886652.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_001886653.1 identified by match to protein family HMM PF01136 YP_001886654.1 identified by match to protein family HMM PF05164 YP_001886655.1 identified by glimmer YP_001886656.1 identified by match to protein family HMM PF07690 YP_001886657.1 identified by match to protein family HMM PF00753 YP_001886658.1 identified by match to protein family HMM PF00924 YP_001886659.1 identified by match to protein family HMM PF02016 YP_001886660.1 identified by match to protein family HMM PF02839 YP_001886661.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001886662.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001886663.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_001886664.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_001886665.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_001886666.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001886667.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_001886668.1 identified by match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168 YP_001886669.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_001886671.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001886672.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001886674.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296 YP_001886675.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_001886676.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001886677.1 identified by match to protein family HMM PF00496 YP_001886678.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001886679.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_001886680.1 identified by match to protein family HMM PF00528 YP_001886681.1 identified by match to protein family HMM PF00528 YP_001886682.1 identified by glimmer YP_001886683.1 identified by match to protein family HMM PF00496 YP_001886684.1 identified by match to protein family HMM PF00155 YP_001886685.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_001886686.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001886687.1 identified by match to protein family HMM PF01522 YP_001886691.1 identified by match to protein family HMM PF08797 YP_001886692.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_001886693.1 identified by similarity to GB:AAS72334.1; match to protein family HMM PF01906 YP_001886694.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001886695.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001886696.1 identified by match to protein family HMM PF02016 YP_001886697.1 identified by match to protein family HMM PF00535 YP_001886698.1 identified by match to protein family HMM PF04138 YP_001886699.1 identified by match to protein family HMM PF00465 YP_001886700.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001886701.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07495 YP_001886702.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_001886703.1 identified by glimmer YP_001886704.1 identified by match to protein family HMM TIGR01451 YP_001886706.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_001886707.1 identified by match to protein family HMM TIGR01451 YP_001886708.1 identified by glimmer YP_001886709.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001886710.1 identified by glimmer YP_001886714.1 identified by glimmer YP_001886715.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241 YP_001886716.2 identified by match to protein family HMM PF00515 YP_001886717.1 identified by match to protein family HMM PF01841 YP_001886718.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001886719.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001886720.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001886721.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01563 YP_001886722.1 identified by match to protein family HMM PF06874 YP_001886724.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001886725.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001886726.1 identified by glimmer YP_001886727.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001886728.1 identified by match to protein family HMM PF00005 YP_001886729.1 identified by match to protein family HMM PF00528 YP_001886731.1 identified by match to protein family HMM PF03885 YP_001886733.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_001886734.1 identified by match to protein family HMM PF03323 YP_001886736.1 identified by match to protein family HMM PF00132 YP_001886739.1 identified by match to protein family HMM PF01037 YP_001886740.1 identified by match to protein family HMM PF04070 YP_001886741.1 identified by match to protein family HMM PF06541 YP_001886743.1 identified by match to protein family HMM PF00753 YP_001886744.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001886746.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490 YP_001886747.1 identified by match to protein family HMM PF04023 YP_001886748.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650 YP_001886749.1 identified by glimmer YP_001886750.1 identified by match to protein family HMM PF01594 YP_001886751.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001886752.1 identified by match to protein family HMM PF02541 YP_001886753.1 identified by match to protein family HMM PF02163 YP_001886756.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121 YP_001886757.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001886758.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001886759.1 identified by match to protein family HMM PF00929 YP_001886760.1 identified by match to protein family HMM PF00301 YP_001886761.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_001886762.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_001886764.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001886765.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001886766.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001886767.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001886768.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857 YP_001886769.1 involved in the allosteric regulation of aspartate carbamoyltransferase YP_001886770.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001886771.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001886773.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_001886774.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353 YP_001886775.1 identified by match to protein family HMM PF07685 YP_001886776.1 identified by match to protein family HMM PF01522 YP_001886777.1 identified by match to protein family HMM PF00768 YP_001886778.1 identified by match to protein family HMM PF01613 YP_001886779.1 identified by match to protein family HMM PF03960 YP_001886780.1 identified by match to protein family HMM PF01757 YP_001886781.1 identified by match to protein family HMM PF09335 YP_001886782.1 identified by match to protein family HMM PF01554; match to protein family HMM PF03023; match to protein family HMM TIGR00797 YP_001886783.1 identified by match to protein family HMM PF01473 YP_001886784.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 YP_001886785.1 identified by match to protein family HMM PF00375 YP_001886786.1 identified by match to protein family HMM PF01381 YP_001886790.1 identified by match to protein family HMM PF00903 YP_001886792.1 identified by match to protein family HMM PF01381 YP_001886794.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08242 YP_001886797.1 identified by match to protein family HMM PF01636 YP_001886798.1 identified by glimmer YP_001886799.1 identified by match to protein family HMM PF00654 YP_001886801.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_001886803.1 identified by match to protein family HMM PF02275 YP_001886804.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_001886810.1 identified by glimmer YP_001886811.1 identified by glimmer YP_001886812.1 identified by glimmer YP_001886813.1 identified by match to protein family HMM PF00583 YP_001886816.1 identified by glimmer YP_001886817.1 identified by glimmer YP_001886818.1 identified by match to protein family HMM PF02810 YP_001886820.1 identified by match to protein family HMM PF00005 YP_001886821.1 identified by match to protein family HMM PF00528 YP_001886822.1 identified by match to protein family HMM PF03788 YP_001886823.1 identified by match to protein family HMM PF04172 YP_001886824.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751 YP_001886825.1 identified by match to protein family HMM PF03073 YP_001886826.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001886827.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001886828.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001886829.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_001886830.1 identified by match to protein family HMM PF01270 YP_001886831.1 identified by match to protein family HMM PF01464 YP_001886832.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001886833.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001886834.1 identified by match to protein family HMM PF02073 YP_001886835.1 identified by glimmer YP_001886836.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_001886837.1 Converts isocitrate to alpha ketoglutarate YP_001886838.1 identified by match to protein family HMM PF03601 YP_001886839.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_001886840.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001886841.1 identified by match to protein family HMM PF01547 YP_001886842.1 identified by match to protein family HMM PF00528 YP_001886843.1 identified by match to protein family HMM PF00528 YP_001886845.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001886846.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001886847.1 identified by match to protein family HMM PF07238 YP_001886849.1 identified by match to protein family HMM PF03551 YP_001886850.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001886851.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001886852.1 identified by glimmer YP_001886853.1 identified by match to protein family HMM PF02698 YP_001886855.1 identified by glimmer YP_001886856.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001886857.1 identified by glimmer YP_001886860.1 identified by match to protein family HMM PF00583 YP_001886861.1 identified by match to protein family HMM PF00293 YP_001886862.1 identified by match to protein family HMM PF04994 YP_001886864.1 identified by glimmer YP_001886865.1 identified by match to protein family HMM PF08887; match to protein family HMM PF08906 YP_001886868.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001886869.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001886872.1 identified by match to protein family HMM PF00724 YP_001886873.1 identified by match to protein family HMM PF01638 YP_001886874.1 identified by match to protein family HMM PF09234 YP_001886875.1 identified by glimmer YP_001886877.1 identified by match to protein family HMM PF00004 YP_001886878.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001886879.1 identified by glimmer YP_001886880.1 identified by match to protein family HMM PF07690 YP_001886881.1 identified by match to protein family HMM PF00440 YP_001886886.1 identified by match to protein family HMM PF00269 YP_001886887.1 identified by glimmer YP_001886888.1 identified by glimmer YP_001886889.1 identified by glimmer YP_001886890.1 identified by glimmer YP_001886893.1 identified by match to protein family HMM PF00082 YP_001886894.1 identified by match to protein family HMM PF00082 YP_001886895.1 identified by glimmer YP_001886896.1 identified by match to protein family HMM PF01726 YP_001886897.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001886900.1 identified by match to protein family HMM PF02368 YP_001886901.1 identified by match to protein family HMM PF01345; match to protein family HMM PF02368; match to protein family HMM TIGR01451 YP_001886902.1 identified by match to protein family HMM PF09693; match to protein family HMM TIGR01669 YP_001886904.1 identified by match to protein family HMM PF03406 YP_001886906.1 identified by match to protein family HMM PF04865 YP_001886910.1 identified by match to protein family HMM PF08239 YP_001886912.1 identified by match to protein family HMM TIGR01760 YP_001886914.1 identified by match to protein family HMM PF08890 YP_001886915.1 identified by match to protein family HMM PF09393 YP_001886922.1 identified by glimmer YP_001886925.1 identified by match to protein family HMM PF06810 YP_001886926.1 identified by glimmer YP_001886928.1 identified by glimmer YP_001886929.1 identified by glimmer YP_001886932.1 identified by match to protein family HMM PF04466; match to protein family HMM PF07570; match to protein family HMM TIGR01547 YP_001886933.1 identified by match to protein family HMM PF03592 YP_001886934.1 identified by glimmer YP_001886936.1 identified by match to protein family HMM PF07875 YP_001886938.1 identified by match to protein family HMM PF07875 YP_001886939.1 identified by match to protein family HMM PF02915; match to protein family HMM PF05067 YP_001886941.1 identified by match to protein family HMM PF00269 YP_001886942.1 identified by glimmer YP_001886944.1 identified by glimmer YP_001886945.1 identified by glimmer YP_001886950.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_001886951.1 identified by glimmer YP_001886952.1 identified by match to protein family HMM PF01507 YP_001886953.1 identified by glimmer YP_001886954.1 identified by glimmer YP_001886956.1 identified by glimmer YP_001886957.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001886961.1 identified by glimmer YP_001886962.1 identified by glimmer YP_001886965.1 identified by match to protein family HMM TIGR01446 YP_001886966.1 identified by match to protein family HMM PF00753 YP_001886969.1 identified by glimmer YP_001886971.1 identified by glimmer YP_001886972.1 identified by glimmer YP_001886973.1 identified by glimmer YP_001886974.1 identified by glimmer YP_001886975.1 identified by match to protein family HMM TIGR01764 YP_001886976.1 identified by match to protein family HMM PF02498; match to protein family HMM PF03374 YP_001886979.1 identified by match to protein family HMM PF06114 YP_001886980.1 identified by match to protein family HMM PF00589 YP_001886984.1 identified by match to protein family HMM PF08903 YP_001886986.1 identified by match to protein family HMM PF04474 YP_001886987.1 identified by glimmer YP_001886990.1 identified by glimmer YP_001886991.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001886993.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF02683; match to protein family HMM PF08534 YP_001886994.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001886995.1 identified by match to protein family HMM PF01289 YP_001886996.1 identified by match to protein family HMM PF00037 YP_001886997.1 identified by glimmer YP_001886998.1 identified by glimmer YP_001887000.1 identified by match to protein family HMM PF00023 YP_001887001.1 identified by glimmer YP_001887004.1 identified by glimmer YP_001887005.1 identified by glimmer YP_001887006.1 identified by glimmer YP_001887007.1 identified by glimmer YP_001887008.1 identified by match to protein family HMM PF09388 YP_001887009.1 identified by glimmer YP_001887010.1 identified by match to protein family HMM PF00583 YP_001887011.1 identified by glimmer YP_001887012.1 identified by glimmer YP_001887013.1 identified by match to protein family HMM PF00892 YP_001887014.1 identified by glimmer YP_001887015.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001887016.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever YP_001887017.1 identified by glimmer YP_001887020.1 identified by match to protein family HMM PF00005 YP_001887021.1 identified by match to protein family HMM PF00529 YP_001887023.1 identified by match to protein family HMM PF02632 YP_001887024.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001887025.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001887027.1 identified by glimmer YP_001887028.1 identified by match to protein family HMM PF00224 YP_001887030.1 identified by match to protein family HMM PF02811 YP_001887032.1 catalyzes the removal of amino acids from the N termini of peptides YP_001887033.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001887034.1 identified by match to protein family HMM PF05979 YP_001887035.1 identified by glimmer YP_001887037.1 identified by match to protein family HMM PF06949 YP_001887038.1 identified by match to protein family HMM PF00580 YP_001887040.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607 YP_001887041.1 identified by match to protein family HMM PF02965 YP_001887042.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001887043.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676 YP_001887044.1 identified by match to protein family HMM PF00953 YP_001887045.1 identified by match to protein family HMM PF00149; match to protein family HMM PF01476; match to protein family HMM PF02872 YP_001887046.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_001887047.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001887048.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_001887049.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex YP_001887050.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex YP_001887051.1 identified by match to protein family HMM PF01991 YP_001887052.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001887053.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_001887055.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055 YP_001887058.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR02900 YP_001887059.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001887060.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_001887061.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001887063.1 identified by glimmer YP_001887064.1 identified by match to protein family HMM PF00580 YP_001887065.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001887069.1 identified by match to protein family HMM PF01475 YP_001887072.1 identified by glimmer YP_001887073.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001887074.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07726; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_001887075.1 binds and unfolds substrates as part of the ClpXP protease YP_001887076.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001887077.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001887079.1 identified by glimmer YP_001887080.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001887081.1 identified by match to protein family HMM PF00583 YP_001887082.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001887083.1 identified by match to protein family HMM PF01842 YP_001887084.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001887085.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001887088.1 identified by match to protein family HMM PF07885 YP_001887090.1 identified by match to protein family HMM PF06180 YP_001887091.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001887092.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001887093.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469 YP_001887094.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001887095.1 catalyzes the formation of siroheme from precorrin-2 YP_001887096.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001887097.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001887098.1 identified by match to protein family HMM PF01255 YP_001887099.1 identified by match to protein family HMM PF00209 YP_001887100.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001887102.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001887103.1 identified by match to protein family HMM TIGR02840 YP_001887104.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001887105.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase YP_001887106.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001887107.1 identified by match to protein family HMM PF00300 YP_001887109.1 identified by match to protein family HMM PF02654 YP_001887111.1 identified by match to protein family HMM PF02572 YP_001887112.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_001887113.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_001887114.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080 YP_001887115.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001887116.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6 YP_001887117.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466 YP_001887118.1 identified by match to protein family HMM PF01890 YP_001887119.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465 YP_001887120.1 catalyzes the formation of precorrin-3A from precorrin-2 YP_001887121.1 identified by match to protein family HMM TIGR02469 YP_001887122.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467 YP_001887123.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A YP_001887124.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid YP_001887125.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid YP_001887126.1 identified by match to protein family HMM PF06180 YP_001887128.1 identified by match to protein family HMM PF00209 YP_001887130.1 identified by match to protein family HMM PF00561 YP_001887131.1 identified by match to protein family HMM PF00258 YP_001887132.1 identified by glimmer YP_001887133.1 identified by match to protein family HMM PF00465 YP_001887134.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_001887135.1 identified by match to protein family HMM PF00959; match to protein family HMM PF01473 YP_001887136.1 identified by match to protein family HMM PF00753 YP_001887137.1 identified by match to protein family HMM PF00015 YP_001887138.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001887139.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_001887140.1 identified by match to protein family HMM PF01047 YP_001887141.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_001887142.1 identified by match to protein family HMM PF00702; match to protein family HMM PF01761; match to protein family HMM TIGR01460 YP_001887143.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001887144.1 identified by match to protein family HMM PF02535 YP_001887146.1 identified by match to protein family HMM PF06207 YP_001887148.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_001887149.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_001887151.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001887152.1 identified by match to protein family HMM PF04018 YP_001887154.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001887155.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001887156.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_001887157.1 identified by match to protein family HMM PF02653 YP_001887158.1 identified by match to protein family HMM PF02653 YP_001887159.1 identified by match to protein family HMM PF00005 YP_001887160.1 identified by match to protein family HMM PF02608 YP_001887161.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001887162.1 identified by match to protein family HMM PF00155 YP_001887163.1 identified by match to protein family HMM PF01037 YP_001887164.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_001887165.1 identified by glimmer YP_001887166.1 identified by match to protein family HMM PF00209 YP_001887167.1 identified by glimmer YP_001887168.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_001887169.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_001887170.1 identified by match to protein family HMM PF00005 YP_001887171.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001887172.1 identified by match to protein family HMM PF04055 YP_001887174.1 molecular chaperone YP_001887175.1 identified by match to protein family HMM PF00132 YP_001887176.1 identified by match to protein family HMM PF02463 YP_001887177.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_001887178.1 identified by match to protein family HMM PF00583 YP_001887179.1 identified by match to protein family HMM PF02698 YP_001887180.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001887181.1 identified by match to protein family HMM PF00144 YP_001887182.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001887184.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001887185.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001887186.1 identified by match to protein family HMM TIGR01921 YP_001887187.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279 YP_001887188.1 identified by match to protein family HMM PF00465 YP_001887189.1 identified by match to protein family HMM PF00697 YP_001887190.1 identified by match to protein family HMM PF00294 YP_001887191.1 identified by glimmer YP_001887192.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001887193.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001887194.1 identified by match to protein family HMM PF00480 YP_001887195.1 identified by glimmer YP_001887196.1 identified by match to protein family HMM PF03062 YP_001887199.1 identified by match to protein family HMM PF00005 YP_001887200.1 identified by glimmer YP_001887201.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001887202.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887203.1 identified by match to protein family HMM PF04231 YP_001887207.1 identified by match to protein family HMM PF01156 YP_001887208.1 identified by match to protein family HMM PF00892 YP_001887209.1 identified by glimmer YP_001887210.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001887211.1 identified by match to protein family HMM PF07561 YP_001887212.1 identified by glimmer YP_001887213.1 identified by glimmer YP_001887214.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437 YP_001887215.1 identified by match to protein family HMM PF04023 YP_001887217.1 CoADR; specific for coenzyme A disulfide; requires NADH; involved in protecting cells against reactive oxygen species by recycling coenzyme A disulfide which can reduce hydrogen peroxide YP_001887218.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_001887219.1 identified by match to protein family HMM PF04055 YP_001887221.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_001887224.1 identified by match to protein family HMM PF05067 YP_001887225.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912 YP_001887226.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide YP_001887227.1 identified by match to protein family HMM TIGR02910 YP_001887228.1 identified by match to protein family HMM PF01226 YP_001887229.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_001887230.1 identified by match to protein family HMM TIGR01764 YP_001887231.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_001887234.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001887235.1 identified by match to protein family HMM PF00175 YP_001887236.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001887237.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_001887238.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001887239.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_001887240.1 identified by glimmer YP_001887241.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001887244.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001887245.1 identified by match to protein family HMM TIGR00274 YP_001887246.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_001887247.1 identified by match to protein family HMM PF05913 YP_001887249.1 identified by match to protein family HMM PF00015 YP_001887250.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001887251.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001887252.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_001887253.1 identified by match to protein family HMM PF04198 YP_001887254.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_001887255.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_001887256.1 similar to hypothetical tRNA/rRNA methyltransferase Slr0992; identified by match to protein family HMM PF00588 YP_001887257.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501 YP_001887258.1 identified by match to protein family HMM PF01183 YP_001887259.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001887260.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887261.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001887262.1 identified by match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_001887263.1 identified by match to protein family HMM PF01553 YP_001887264.1 identified by match to protein family HMM PF08331 YP_001887265.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_001887266.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_001887267.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448 YP_001887268.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497 YP_001887271.1 similar to YegS from E. coli YP_001887272.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_001887274.1 identified by glimmer YP_001887275.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001887276.1 identified by match to protein family HMM PF04293 YP_001887277.1 identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877 YP_001887278.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_001887279.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_001887280.1 identified by glimmer YP_001887281.1 identified by glimmer YP_001887283.1 identified by match to protein family HMM PF00005 YP_001887284.1 identified by match to protein family HMM PF02518 YP_001887285.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887286.1 identified by glimmer YP_001887287.1 identified by glimmer YP_001887288.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915 YP_001887289.1 identified by match to protein family HMM PF01734 YP_001887290.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693 YP_001887291.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_001887292.1 identified by match to protein family HMM PF01256; match to protein family HMM PF08543; match to protein family HMM TIGR00097 YP_001887293.1 identified by match to protein family HMM PF09512; match to protein family HMM TIGR02359 YP_001887294.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_001887295.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_001887296.1 identified by match to protein family HMM PF00485 YP_001887297.1 identified by match to protein family HMM PF04239 YP_001887299.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859 YP_001887300.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001887301.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001887302.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001887303.1 identified by match to protein family HMM PF01960; match to protein family HMM TIGR00120 YP_001887304.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001887305.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_001887306.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658 YP_001887307.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001887309.1 identified by match to protein family HMM PF01928 YP_001887310.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_001887311.1 identified by glimmer YP_001887312.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_001887313.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway YP_001887314.1 identified by match to protein family HMM PF03610 YP_001887315.1 identified by match to protein family HMM PF01380 YP_001887316.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM PF08220 YP_001887317.1 identified by match to protein family HMM PF03613 YP_001887318.1 identified by match to protein family HMM PF03609 YP_001887319.1 identified by match to protein family HMM PF03830; match to protein family HMM TIGR00854 YP_001887320.1 identified by glimmer YP_001887321.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_001887322.1 identified by match to protein family HMM PF02153 YP_001887323.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001887324.1 identified by match to protein family HMM PF01202 YP_001887325.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507 YP_001887326.1 identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01805 YP_001887327.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001887328.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001887329.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001887330.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate YP_001887331.1 identified by glimmer YP_001887332.1 identified by match to protein family HMM PF00704 YP_001887333.1 identified by match to protein family HMM PF00614 YP_001887334.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_001887335.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001887336.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001887338.1 identified by glimmer YP_001887340.1 identified by match to protein family HMM TIGR01911 YP_001887341.1 identified by glimmer YP_001887343.1 identified by match to protein family HMM PF07728 YP_001887345.1 identified by match to protein family HMM PF04607 YP_001887347.1 identified by match to protein family HMM PF00015 YP_001887348.1 identified by match to protein family HMM PF01471 YP_001887349.1 identified by match to protein family HMM PF00149 YP_001887352.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001887353.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_001887354.1 identified by match to protein family HMM PF03323 YP_001887355.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_001887357.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001887358.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_001887359.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_001887360.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_001887361.1 identified by match to protein family HMM PF02397 YP_001887362.1 identified by match to protein family HMM PF00534 YP_001887363.1 identified by match to protein family HMM PF01473 YP_001887364.1 identified by match to protein family HMM PF01473 YP_001887365.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001887366.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887367.1 identified by match to protein family HMM PF00534 YP_001887368.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_001887372.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_001887373.1 identified by match to protein family HMM PF00535 YP_001887374.1 identified by match to protein family HMM PF04991 YP_001887375.1 identified by match to protein family HMM PF00535 YP_001887376.1 identified by match to protein family HMM PF00528 YP_001887377.1 identified by match to protein family HMM PF00528 YP_001887378.1 identified by match to protein family HMM PF01547 YP_001887379.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001887380.1 identified by match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_001887381.1 identified by match to protein family HMM PF00892 YP_001887382.1 identified by match to protein family HMM PF01473 YP_001887383.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_001887385.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01633; match to protein family HMM PF01636 YP_001887386.1 identified by glimmer YP_001887388.1 identified by match to protein family HMM PF01473 YP_001887389.1 identified by glimmer YP_001887390.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001887391.1 identified by match to protein family HMM PF01473; match to protein family HMM PF01520 YP_001887393.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_001887394.1 identified by match to protein family HMM PF08543 YP_001887395.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_001887396.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992 YP_001887397.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856 YP_001887398.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_001887399.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_001887400.1 identified by match to protein family HMM PF00175 YP_001887401.1 identified by match to protein family HMM PF00465 YP_001887402.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954 YP_001887403.1 identified by match to protein family HMM PF06725 YP_001887405.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503 YP_001887406.1 identified by match to protein family HMM PF01473; match to protein family HMM PF09479; match to protein family HMM TIGR02543 YP_001887408.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_001887409.1 identified by match to protein family HMM PF01473 YP_001887410.1 identified by match to protein family HMM PF01473 YP_001887411.1 identified by match to protein family HMM PF01473 YP_001887412.1 identified by match to protein family HMM PF01473 YP_001887413.1 identified by match to protein family HMM PF01473 YP_001887414.1 identified by match to protein family HMM PF01473 YP_001887415.1 identified by match to protein family HMM PF01473 YP_001887416.1 identified by match to protein family HMM PF01473 YP_001887417.1 identified by match to protein family HMM PF01473 YP_001887418.1 identified by match to protein family HMM PF01473 YP_001887419.1 identified by match to protein family HMM PF01473 YP_001887421.1 identified by match to protein family HMM PF01431; match to protein family HMM PF05649 YP_001887422.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_001887423.1 identified by match to protein family HMM PF00535 YP_001887426.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02655 YP_001887427.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_001887428.1 identified by match to protein family HMM PF00535 YP_001887429.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis YP_001887430.1 identified by glimmer YP_001887432.1 identified by match to protein family HMM PF00535 YP_001887433.1 identified by match to protein family HMM PF00005 YP_001887434.2 identified by match to protein family HMM PF01061 YP_001887435.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_001887436.1 identified by match to protein family HMM PF00535 YP_001887437.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_001887438.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001887439.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207 YP_001887440.1 identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025 YP_001887441.1 identified by match to protein family HMM PF04932 YP_001887443.1 identified by match to protein family HMM PF01473 YP_001887444.1 identified by match to protein family HMM PF01473 YP_001887446.1 identified by match to protein family HMM PF00753; match to protein family HMM PF01473 YP_001887447.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_001887448.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_001887450.1 identified by match to protein family HMM PF02302 YP_001887451.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr YP_001887452.1 identified by match to protein family HMM PF00359 YP_001887454.1 identified by match to protein family HMM PF00455; match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001887455.1 catalyzes the removal of amino acids from the N termini of peptides YP_001887456.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_001887457.1 identified by glimmer YP_001887458.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_001887459.1 identified by glimmer YP_001887460.1 identified by glimmer YP_001887461.1 identified by glimmer YP_001887462.1 identified by glimmer YP_001887463.1 identified by match to protein family HMM PF00015 YP_001887464.1 identified by match to protein family HMM PF00005 YP_001887465.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_001887466.1 identified by match to protein family HMM PF00497 YP_001887468.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241 YP_001887470.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001887471.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_001887472.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_001887473.1 identified by glimmer YP_001887476.1 identified by match to protein family HMM PF01510 YP_001887477.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_001887478.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001887479.1 identified by match to protein family HMM PF00092 YP_001887480.1 identified by match to protein family HMM TIGR02532 YP_001887482.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001887484.1 identified by match to protein family HMM PF05137 YP_001887485.1 identified by match to protein family HMM TIGR01175 YP_001887486.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_001887487.1 identified by match to protein family HMM PF00482 YP_001887488.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157 YP_001887489.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_001887492.1 identified by match to protein family HMM PF00005 YP_001887493.1 identified by match to protein family HMM PF00392 YP_001887494.1 identified by glimmer YP_001887495.1 identified by match to protein family HMM PF00015; match to protein family HMM TIGR01098 YP_001887496.1 identified by match to protein family HMM PF00403 YP_001887497.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_001887498.1 identified by match to protein family HMM PF02583 YP_001887499.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_001887500.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_001887501.1 identified by match to protein family HMM PF00795 YP_001887504.1 identified by match to protein family HMM PF00291 YP_001887505.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001887506.1 identified by match to protein family HMM PF01053 YP_001887507.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_001887508.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_001887512.1 identified by match to protein family HMM PF00941 YP_001887513.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799 YP_001887514.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738 YP_001887515.1 identified by match to protein family HMM PF00126 YP_001887516.1 identified by match to protein family HMM PF01170; match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_001887518.1 identified by glimmer YP_001887519.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312 YP_001887520.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_001887521.1 identified by match to protein family HMM PF00480 YP_001887522.1 identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064 YP_001887523.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001887524.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001887525.1 identified by match to protein family HMM PF07876 YP_001887526.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_001887527.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_001887528.1 identified by match to protein family HMM PF03668 YP_001887529.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001887530.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001887531.1 identified by match to protein family HMM PF00905 YP_001887532.1 identified by match to protein family HMM PF01098 YP_001887533.1 identified by match to protein family HMM PF00498 YP_001887534.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001887535.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001887537.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_001887538.1 identified by match to protein family HMM PF02687 YP_001887539.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_001887540.1 identified by match to protein family HMM PF02588 YP_001887541.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001887542.1 identified by match to protein family HMM PF00456 YP_001887543.1 identified by match to protein family HMM PF03613 YP_001887544.1 identified by match to protein family HMM PF03609 YP_001887545.1 identified by match to protein family HMM PF03830 YP_001887546.1 identified by match to protein family HMM PF03610 YP_001887547.1 identified by match to protein family HMM PF00004; match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_001887548.1 identified by match to protein family HMM PF02452 YP_001887551.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197 YP_001887552.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001887554.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001887555.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_001887556.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_001887557.1 identified by match to protein family HMM PF00132 YP_001887558.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212 YP_001887559.1 identified by match to protein family HMM PF08876 YP_001887560.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_001887561.1 identified by match to protein family HMM PF05175 YP_001887562.1 identified by match to protein family HMM PF00877 YP_001887563.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_001887564.1 identified by match to protein family HMM PF00639 YP_001887565.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001887568.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_001887569.1 identified by match to protein family HMM PF06445 YP_001887570.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_001887571.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001887572.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_001887573.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350 YP_001887574.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_001887575.1 identified by match to protein family HMM PF01047 YP_001887578.1 identified by match to protein family HMM PF02517 YP_001887579.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199 YP_001887580.1 identified by match to protein family HMM PF00300 YP_001887581.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_001887583.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001887585.1 identified by match to protein family HMM PF00884 YP_001887586.1 identified by match to protein family HMM PF02667; match to protein family HMM PF03606; match to protein family HMM PF03806 YP_001887587.1 identified by match to protein family HMM PF04892 YP_001887590.1 identified by match to protein family HMM TIGR02092 YP_001887591.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_001887592.1 identified by match to protein family HMM PF00128 YP_001887593.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_001887594.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001887595.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_001887596.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_001887597.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826 YP_001887598.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_001887599.1 identified by match to protein family HMM PF00583 YP_001887601.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; match to protein family HMM PF07196 YP_001887602.1 identified by match to protein family HMM PF02599 YP_001887603.1 identified by match to protein family HMM PF05976 YP_001887604.1 identified by match to protein family HMM PF00899 YP_001887605.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001887606.1 identified by match to protein family HMM PF01473 YP_001887607.1 identified by match to protein family HMM PF07907 YP_001887608.1 identified by match to protein family HMM PF01336 YP_001887609.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_001887610.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001887611.1 identified by match to protein family HMM PF06245 YP_001887612.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_001887613.1 identified by match to protein family HMM PF00266 YP_001887616.1 identified by match to protein family HMM PF00005 YP_001887617.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_001887619.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001887620.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_001887621.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001887622.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001887623.1 identified by match to protein family HMM PF00186 YP_001887625.1 identified by match to protein family HMM PF01569 YP_001887626.1 identified by match to protein family HMM PF00383 YP_001887627.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_001887628.1 identified by match to protein family HMM PF00294 YP_001887629.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_001887630.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_001887631.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR01996 YP_001887633.1 identified by match to protein family HMM TIGR00027 YP_001887634.1 identified by match to protein family HMM PF00005 YP_001887635.1 identified by glimmer YP_001887636.1 identified by match to protein family HMM PF02687 YP_001887637.1 identified by glimmer YP_001887638.1 identified by match to protein family HMM PF00753 YP_001887639.1 identified by glimmer YP_001887640.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_001887641.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_001887642.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_001887643.1 identified by glimmer YP_001887644.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001887645.1 identified by match to protein family HMM PF01636 YP_001887646.1 identified by match to protein family HMM PF07561 YP_001887648.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815 YP_001887649.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001887651.1 identified by match to protein family HMM PF01925 YP_001887652.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_001887653.1 identified by glimmer YP_001887655.1 identified by match to protein family HMM PF01734 YP_001887656.1 identified by match to protein family HMM PF03618 YP_001887658.1 identified by match to protein family HMM PF01926; match to protein family HMM PF08477; match to protein family HMM TIGR00231 YP_001887659.1 identified by match to protein family HMM PF00691 YP_001887660.1 identified by match to protein family HMM PF01618 YP_001887661.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771 YP_001887662.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_001887663.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887664.1 identified by match to protein family HMM PF02687 YP_001887665.1 identified by match to protein family HMM PF00005 YP_001887666.1 identified by match to protein family HMM PF01047 YP_001887667.1 identified by match to protein family HMM PF00085 YP_001887668.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277 YP_001887669.1 identified by glimmer YP_001887671.1 identified by match to protein family HMM PF01047; match to protein family HMM PF01978 YP_001887673.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_001887674.1 identified by match to protein family HMM PF00456 YP_001887675.1 identified by match to protein family HMM PF04215 YP_001887676.1 identified by match to protein family HMM PF02302 YP_001887677.1 identified by match to protein family HMM PF00359 YP_001887678.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF02302; match to protein family HMM PF08279 YP_001887679.1 identified by match to protein family HMM PF00128 YP_001887680.1 identified by match to protein family HMM PF00165 YP_001887682.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_001887683.1 identified by match to protein family HMM PF01384 YP_001887684.1 identified by match to protein family HMM PF01865 YP_001887686.1 identified by glimmer YP_001887687.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_001887688.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_001887689.1 identified by match to protein family HMM PF03009 YP_001887690.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_001887693.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001887694.1 identified by match to protein family HMM PF06555 YP_001887695.1 identified by match to protein family HMM PF02810 YP_001887696.1 identified by match to protein family HMM PF00753 YP_001887697.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001887699.1 identified by match to protein family HMM PF08761 YP_001887700.1 identified by match to protein family HMM PF04657 YP_001887701.1 identified by match to protein family HMM PF00753 YP_001887702.1 identified by match to protein family HMM PF00082 YP_001887703.1 identified by match to protein family HMM PF01551; match to protein family HMM PF07501 YP_001887704.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_001887705.1 acts to load the DnaB helicase onto the initiation site during DNA replication YP_001887707.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_001887708.1 identified by match to protein family HMM PF01643 YP_001887710.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001887711.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_001887712.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_001887714.1 unwinds double stranded DNA YP_001887715.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02903 YP_001887716.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001887717.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_001887719.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001887720.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621 YP_001887721.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001887722.1 identified by match to protein family HMM PF06107 YP_001887723.1 identified by match to protein family HMM PF00924 YP_001887725.1 identified by match to protein family HMM PF01810 YP_001887726.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977 YP_001887727.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_001887729.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001887730.1 identified by match to protein family HMM PF01656 YP_001887731.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_001887732.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001887733.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001887734.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001887735.1 identified by match to protein family HMM PF01424 YP_001887736.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_001887737.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001887738.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_001893624.1 identified by match to protein family HMM PF01473 YP_001893625.1 identified by glimmer; putative YP_001893628.1 identified by match to protein family HMM PF02534 YP_001893634.1 identified by match to protein family HMM PF00877 YP_001893639.1 identified by glimmer; putative YP_001893642.1 identified by match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621 YP_001893644.1 identified by glimmer; putative YP_001893646.1 identified by glimmer; putative YP_001893647.1 identified by glimmer; putative YP_001893648.1 identified by glimmer; putative YP_001893649.1 identified by glimmer; putative YP_001893650.1 identified by glimmer; putative YP_001893651.1 identified by glimmer; putative YP_001893652.1 identified by glimmer; putative YP_001893656.1 identified by match to protein family HMM PF03505 YP_001893657.1 identified by match to protein family HMM PF05588 YP_001893658.1 identified by match to protein family HMM PF00652 YP_001893659.1 identified by match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209 YP_001893660.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470 YP_001893661.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953 YP_001893663.1 identified by match to protein family HMM PF00239 YP_001893664.1 identified by match to protein family HMM PF00239 YP_001893665.1 identified by glimmer; putative YP_001893669.1 identified by glimmer; putative YP_001893671.1 identified by match to protein family HMM PF01381 YP_001893672.1 identified by match to protein family HMM PF01381 YP_001893673.1 identified by match to protein family HMM PF01381 YP_001893675.1 identified by glimmer; putative YP_001893677.1 identified by match to protein family HMM PF01473