-- dump date   	20140619_043141
-- class       	Genbank::Gene
-- table       	gene_note
-- id	note
5398900	phosphatidylserine decarboxylase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:Q46192
5398616	amidohydrolase homolog, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAO34866.1
5401431	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAK78626.1
5399155	cytochrome c-type biogenesis protein CcdA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02683
5398767	FAD binding domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01565
5400526	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF06738
5399083	ArsR family transcriptional regulator
5400240	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error
5400123	ABC transporter ATP-binding protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00005
5399030	methionyl-tRNA synthetase, truncation; identified by match to protein family HMM PF01588
5400975	histidine kinase
5399303	tnpV protein, fragment
5399326	enterolysin A, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAG29099.1
5401466	SAM-dependent methyltransferase
5400557	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAK33292.1
5398771	hydrolase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAS42270.1
5398387	sensor histidine kinase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02518
5399804	GNAT family acetyltransferase
16691479	AbrB family transcriptional regulator
5400192	glycine/sarcosine/betaine reductase complex protein A
5400417	Trk system potassium uptake protein TrkA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02080; match to protein family HMM PF02254
5399927	RpiR family transcriptional regular
5401725	thermolysin, , authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:CAA54291.1; match to protein family HMM PF03413
5400012	ABC transporterpermease, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02687
5399811	chloramphenicol acetyltransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00302
5401134	endonuclease/exonuclease/phosphatase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAS39418.1
5399419	aco operon expression regulatory protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:ABK62406.1; match to protein family HMM PF01590
5399404	DNA mismatch repair protein MutS, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070
5401211	internalin; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF00560
5401036	resolvase domain protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00239
5400177	radical SAM protein
5399923	hypothetical protein
5401207	peptidase, , degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
5399314	hypothetical protein
5400283	proline reductase
5401337	rrf2 family protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
5401792	proline reductase
5399452	acetyltransferase, GNAT family, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
5399038	sodium:alanine symporter family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAN00027.1
5398845	conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:ABG85636.1
5400201	flagellar basal body-associated protein FliL, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF03748
5399196	methyltransferase
5400965	ribonucleoside-diphosphate reductase, alpha subunit, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAK92209.1; match to protein family HMM PF00317; match to protein family HMM PF03477
5399091	transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
5400625	transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error
5398478	phage replisome organizer, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAP81901.1; match to protein family HMM TIGR01714
5401343	glycosyl transferase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P44029
5399054	ABC transporter permease, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00528
5401657	acetyltransferase, GNAT family, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF00583
5398728	response regulator, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF00072
5399108	nitroreductase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error