-- dump date 20140619_043141 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 441771000001 SEQ_END SEQ_END NC_009698.1 3760560 3760560 DR NC_009698.1; contig end 3760560..3760560 Clostridium botulinum A str. Hall YP_001385963.1 CDS dnaA NC_009698.1 1 1347 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1347 Clostridium botulinum A str. Hall 5400372 YP_001385964.1 CDS dnaN NC_009698.1 1610 2713 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1610..2713 Clostridium botulinum A str. Hall 5400292 YP_001385965.1 CDS CLC_0003 NC_009698.1 2732 2938 D identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988; S4 domain-containing protein 2732..2938 Clostridium botulinum A str. Hall 5400522 YP_001385966.1 CDS recF NC_009698.1 3007 4101 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3007..4101 Clostridium botulinum A str. Hall 5401795 YP_001385967.1 CDS CLC_0005 NC_009698.1 4122 4385 D hypothetical protein 4122..4385 Clostridium botulinum A str. Hall 5398732 YP_001385968.1 CDS gyrB NC_009698.1 4403 6316 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4403..6316 Clostridium botulinum A str. Hall 5399484 YP_001385969.1 CDS gyrA NC_009698.1 6342 8867 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 6342..8867 Clostridium botulinum A str. Hall 5400142 YP_001385970.1 CDS CLC_0017 NC_009698.1 14442 14894 D hypothetical protein 14442..14894 Clostridium botulinum A str. Hall 5398406 YP_001385971.1 CDS CLC_0018 NC_009698.1 14910 15431 D identified by match to protein family HMM PF02829; match to protein family HMM PF08279; transcriptional regulator 14910..15431 Clostridium botulinum A str. Hall 5399287 YP_001385972.1 CDS CLC_0019 NC_009698.1 15433 16596 D identified by match to protein family HMM PF00037; match to protein family HMM PF04015; (Fe-S)-binding protein 15433..16596 Clostridium botulinum A str. Hall 5399101 YP_001385973.1 CDS CLC_0020 NC_009698.1 16601 19282 D identified by match to protein family HMM PF03699; hypothetical protein 16601..19282 Clostridium botulinum A str. Hall 5399006 YP_001385974.1 CDS CLC_0021 NC_009698.1 19419 20195 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 19419..20195 Clostridium botulinum A str. Hall 5399859 YP_001385975.1 CDS CLC_0022 NC_009698.1 20220 21617 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD dependent 20220..21617 Clostridium botulinum A str. Hall 5400120 YP_001385976.1 CDS CLC_0023 NC_009698.1 21634 21987 D identified by match to protein family HMM PF07892; hypothetical protein 21634..21987 Clostridium botulinum A str. Hall 5398996 YP_001385977.1 CDS serS-1 NC_009698.1 22357 23637 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 22357..23637 Clostridium botulinum A str. Hall 5399291 YP_001385979.1 CDS CLC_0037 NC_009698.1 26616 26978 D identified by Glimmer3; hypothetical protein 26616..26978 Clostridium botulinum A str. Hall 5399488 YP_001385980.1 CDS CLC_0038 NC_009698.1 27051 27899 D identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein 27051..27899 Clostridium botulinum A str. Hall 5400988 YP_001385981.1 CDS CLC_0039 NC_009698.1 27908 28741 D hypothetical protein 27908..28741 Clostridium botulinum A str. Hall 5398932 YP_001385982.1 CDS CLC_0040 NC_009698.1 28753 29556 D hypothetical protein 28753..29556 Clostridium botulinum A str. Hall 5401022 YP_001385983.1 CDS CLC_0041 NC_009698.1 29573 30385 D hypothetical protein 29573..30385 Clostridium botulinum A str. Hall 5398944 YP_001385984.1 CDS psd-2 NC_009698.1 30625 31512 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(30625..31512) Clostridium botulinum A str. Hall 5401023 YP_001385985.1 CDS CLC_0043 NC_009698.1 31615 33213 R identified by match to protein family HMM PF01163; match to protein family HMM PF03109; hypothetical protein complement(31615..33213) Clostridium botulinum A str. Hall 5401193 YP_001385986.1 CDS CLC_0044 NC_009698.1 33289 33609 R hypothetical protein complement(33289..33609) Clostridium botulinum A str. Hall 5401659 YP_001385987.1 CDS CLC_0046 NC_009698.1 34004 35542 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sensory box sigma-54 dependent transcriptional regulator 34004..35542 Clostridium botulinum A str. Hall 5398815 YP_001385988.1 CDS megL NC_009698.1 35702 36904 D catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 35702..36904 Clostridium botulinum A str. Hall 5398407 YP_001385989.1 CDS CLC_0048 NC_009698.1 37028 37465 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 37028..37465 Clostridium botulinum A str. Hall 5400541 YP_001385990.1 CDS dnaX NC_009698.1 38110 39735 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 38110..39735 Clostridium botulinum A str. Hall 5400573 YP_001385991.1 CDS CLC_0052 NC_009698.1 39800 40141 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 39800..40141 Clostridium botulinum A str. Hall 5400028 YP_001385992.1 CDS recR NC_009698.1 40174 40770 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 40174..40770 Clostridium botulinum A str. Hall 5400973 YP_001385993.1 CDS CLC_0054 NC_009698.1 40827 41090 D hypothetical protein 40827..41090 Clostridium botulinum A str. Hall 5400768 YP_001385994.1 CDS bofA NC_009698.1 41240 41500 D identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862; sigma-K factor processing regulatory protein BofA 41240..41500 Clostridium botulinum A str. Hall 5401699 YP_001385995.1 CDS sfsA NC_009698.1 41651 42343 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 41651..42343 Clostridium botulinum A str. Hall 5400775 YP_001385996.1 CDS CLC_0057 NC_009698.1 42399 42887 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 42399..42887 Clostridium botulinum A str. Hall 5398793 YP_001385997.1 CDS CLC_0058 NC_009698.1 43005 43727 D hypothetical protein 43005..43727 Clostridium botulinum A str. Hall 5398445 YP_001385998.1 CDS CLC_0059 NC_009698.1 43861 44649 D identified by match to protein family HMM PF00037; (Fe-S)-binding protein 43861..44649 Clostridium botulinum A str. Hall 5400339 YP_001385999.1 CDS CLC_0060 NC_009698.1 44668 44829 D hypothetical protein 44668..44829 Clostridium botulinum A str. Hall 5400900 YP_001386000.1 CDS CLC_0061 NC_009698.1 45212 45916 D identified by match to protein family HMM PF00899; ThiF domain-containing protein 45212..45916 Clostridium botulinum A str. Hall 5399274 YP_001386001.1 CDS CLC_0062 NC_009698.1 45999 47108 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 45999..47108 Clostridium botulinum A str. Hall 5398870 YP_001386002.1 CDS CLC_0063 NC_009698.1 47137 48081 D identified by match to protein family HMM PF00583; acetyltransferase 47137..48081 Clostridium botulinum A str. Hall 5400135 YP_001386003.1 CDS CLC_0071 NC_009698.1 53636 54232 R identified by match to protein family HMM PF03167; uracil-DNA glycosylase complement(53636..54232) Clostridium botulinum A str. Hall 5400559 YP_001386004.1 CDS CLC_0079 NC_009698.1 60394 60957 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 60394..60957 Clostridium botulinum A str. Hall 5401453 YP_001386005.1 CDS CLC_0080 NC_009698.1 60954 62396 D hypothetical protein 60954..62396 Clostridium botulinum A str. Hall 5399355 YP_001386006.1 CDS CLC_0088 NC_009698.1 68058 68801 D identified by match to protein family HMM PF00639; peptidil-prolyl isomerase 68058..68801 Clostridium botulinum A str. Hall 5400743 YP_001386007.1 CDS CLC_0094 NC_009698.1 74540 75283 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 74540..75283 Clostridium botulinum A str. Hall 5401535 YP_001386008.1 CDS CLC_0096 NC_009698.1 75469 76377 R identified by match to protein family HMM PF02016; LD-carboxypeptidase complement(75469..76377) Clostridium botulinum A str. Hall 5401783 YP_001386009.1 CDS CLC_0097 NC_009698.1 76413 77354 R identified by match to protein family HMM PF01544; CorA family protein complement(76413..77354) Clostridium botulinum A str. Hall 5399340 YP_001386010.1 CDS CLC_0098 NC_009698.1 77719 78222 D hypothetical protein 77719..78222 Clostridium botulinum A str. Hall 5399718 YP_001386011.1 CDS CLC_0100 NC_009698.1 79642 79854 D csfB protein-like protein 79642..79854 Clostridium botulinum A str. Hall 5401019 YP_001386012.1 CDS CLC_0101 NC_009698.1 79833 81281 D identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 79833..81281 Clostridium botulinum A str. Hall 5398393 YP_001386013.1 CDS CLC_0102 NC_009698.1 81305 82000 D thymidylate kinase 81305..82000 Clostridium botulinum A str. Hall 5400294 YP_001386014.1 CDS CLC_0103 NC_009698.1 82081 82410 D identified by match to protein family HMM PF06153; hypothetical protein 82081..82410 Clostridium botulinum A str. Hall 5399203 YP_001386015.1 CDS CLC_0104 NC_009698.1 82428 83372 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 82428..83372 Clostridium botulinum A str. Hall 5401578 YP_001386016.1 CDS CLC_0105 NC_009698.1 83374 84288 D identified by match to protein family HMM PF04468; PSP1 domain-containing protein 83374..84288 Clostridium botulinum A str. Hall 5399661 YP_001386017.1 CDS CLC_0106 NC_009698.1 84300 84503 D hypothetical protein 84300..84503 Clostridium botulinum A str. Hall 5401445 YP_001386018.1 CDS CLC_0107 NC_009698.1 84585 84755 D identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 84585..84755 Clostridium botulinum A str. Hall 5400060 YP_001386019.1 CDS CLC_0108 NC_009698.1 84876 85616 D hypothetical protein 84876..85616 Clostridium botulinum A str. Hall 5401693 YP_001386020.1 CDS CLC_0109 NC_009698.1 85636 86490 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 85636..86490 Clostridium botulinum A str. Hall 5400206 YP_001386021.1 CDS CLC_0110 NC_009698.1 86646 87749 D identified by match to protein family HMM PF00877; NlpC/P60 family protein 86646..87749 Clostridium botulinum A str. Hall 5398228 YP_001386022.1 CDS CLC_0111 NC_009698.1 87849 88094 R identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator complement(87849..88094) Clostridium botulinum A str. Hall 5401120 YP_001386023.1 CDS CLC_0112 NC_009698.1 88901 89512 D identified by match to protein family HMM PF08876; hypothetical protein 88901..89512 Clostridium botulinum A str. Hall 5398624 YP_001386024.1 CDS arcA-1 NC_009698.1 89934 91145 D identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078; arginine deiminase 89934..91145 Clostridium botulinum A str. Hall 5398693 YP_001386025.1 CDS ispF NC_009698.1 91231 91698 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(91231..91698) Clostridium botulinum A str. Hall 5398691 YP_001386027.1 CDS CLC_0116 NC_009698.1 92434 93303 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 92434..93303 Clostridium botulinum A str. Hall 5399568 YP_001386028.1 CDS CLC_0117 NC_009698.1 93572 93814 R hypothetical protein complement(93572..93814) Clostridium botulinum A str. Hall 5400214 YP_001386029.1 CDS spmA NC_009698.1 93934 94509 D identified by match to protein family HMM PF07670; spore maturation protein A 93934..94509 Clostridium botulinum A str. Hall 5400191 YP_001386030.1 CDS CLC_0119 NC_009698.1 94522 95040 D identified by match to protein family HMM PF07670; spore maturation protein B 94522..95040 Clostridium botulinum A str. Hall 5398428 YP_001386031.1 CDS CLC_0120 NC_009698.1 95285 96622 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(95285..96622) Clostridium botulinum A str. Hall 5400543 YP_001386032.1 CDS udgA NC_009698.1 96766 97338 D identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 96766..97338 Clostridium botulinum A str. Hall 5401508 YP_001386033.1 CDS CLC_0122 NC_009698.1 97367 97801 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 97367..97801 Clostridium botulinum A str. Hall 5401546 YP_001386034.1 CDS metG NC_009698.1 98183 100120 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 98183..100120 Clostridium botulinum A str. Hall 5400695 YP_001386035.1 CDS CLC_0124 NC_009698.1 100285 101790 D identified by match to protein family HMM PF04286; hypothetical protein 100285..101790 Clostridium botulinum A str. Hall 5399644 YP_001386036.1 CDS CLC_0125 NC_009698.1 101941 102735 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 101941..102735 Clostridium botulinum A str. Hall 5399992 YP_001386037.1 CDS CLC_0126 NC_009698.1 102963 104021 D identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 102963..104021 Clostridium botulinum A str. Hall 5398865 YP_001386038.1 CDS CLC_0127 NC_009698.1 104094 104639 D identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 104094..104639 Clostridium botulinum A str. Hall 5399908 YP_001386039.1 CDS ksgA NC_009698.1 104641 105468 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 104641..105468 Clostridium botulinum A str. Hall 5399946 YP_001386040.1 CDS CLC_0129 NC_009698.1 105547 106788 D hypothetical protein 105547..106788 Clostridium botulinum A str. Hall 5401752 YP_001386041.1 CDS CLC_0130 NC_009698.1 106945 107532 D hypothetical protein 106945..107532 Clostridium botulinum A str. Hall 5400523 YP_001386042.1 CDS CLC_0131 NC_009698.1 107701 108534 D lipoprotein 107701..108534 Clostridium botulinum A str. Hall 5401571 YP_001386043.1 CDS CLC_0132 NC_009698.1 108702 109763 D identified by match to protein family HMM TIGR01730; RND family marcrolide efflux protein 108702..109763 Clostridium botulinum A str. Hall 5399633 YP_001386044.1 CDS CLC_0133 NC_009698.1 109774 110469 D identified by match to protein family HMM PF00005; macrolide efflux ABC transporter ATP-binding protein 109774..110469 Clostridium botulinum A str. Hall 5399468 YP_001386045.1 CDS CLC_0134 NC_009698.1 110466 111674 D identified by match to protein family HMM PF02687; macrolide efflux ABC transporter permease 110466..111674 Clostridium botulinum A str. Hall 5400751 YP_001386046.1 CDS CLC_0135 NC_009698.1 111756 112598 D MRP protein-like protein 111756..112598 Clostridium botulinum A str. Hall 5398757 YP_001386047.1 CDS CLC_0136 NC_009698.1 112738 112929 D identified by match to protein family HMM PF00037; (Fe-S)-binding protein 112738..112929 Clostridium botulinum A str. Hall 5400019 YP_001386048.1 CDS CLC_0137 NC_009698.1 113004 113138 D identified by Glimmer3; hypothetical protein 113004..113138 Clostridium botulinum A str. Hall 5398912 YP_001386049.1 CDS CLC_0138 NC_009698.1 113375 113551 R identified by Glimmer3; hypothetical protein complement(113375..113551) Clostridium botulinum A str. Hall 5400176 YP_001386050.1 CDS CLC_0139 NC_009698.1 113629 114699 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 113629..114699 Clostridium botulinum A str. Hall 5399866 YP_001386051.1 CDS CLC_0140 NC_009698.1 114756 115484 D identified by match to protein family HMM PF02308; mgtC family protein 114756..115484 Clostridium botulinum A str. Hall 5401235 YP_001386052.1 CDS nrdD NC_009698.1 115774 117915 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 115774..117915 Clostridium botulinum A str. Hall 5399046 YP_001386053.1 CDS nrdG NC_009698.1 117932 118447 D identified by match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 117932..118447 Clostridium botulinum A str. Hall 5399748 YP_001386055.1 CDS CLC_0144 NC_009698.1 118984 119658 R hypothetical protein complement(118984..119658) Clostridium botulinum A str. Hall 5399056 YP_001386056.1 CDS CLC_0145 NC_009698.1 119660 119998 R identified by match to protein family HMM PF03551; PadR family transcriptional regulator complement(119660..119998) Clostridium botulinum A str. Hall 5399148 YP_001386057.1 CDS CLC_0146 NC_009698.1 120119 120757 R zinc-dependent hydrolase complement(120119..120757) Clostridium botulinum A str. Hall 5400421 YP_001386058.1 CDS ileS NC_009698.1 121199 124315 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 121199..124315 Clostridium botulinum A str. Hall 5399270 YP_001386059.1 CDS CLC_0148 NC_009698.1 124466 125464 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 124466..125464 Clostridium botulinum A str. Hall 5401640 YP_001386060.1 CDS CLC_0149 NC_009698.1 125680 129732 D hypothetical protein 125680..129732 Clostridium botulinum A str. Hall 5400803 YP_001386061.1 CDS CLC_0150 NC_009698.1 129807 130874 D identified by match to protein family HMM PF00483; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 129807..130874 Clostridium botulinum A str. Hall 5398431 YP_001386062.1 CDS CLC_0151 NC_009698.1 131210 132499 D identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 131210..132499 Clostridium botulinum A str. Hall 5398619 YP_001386063.1 CDS CLC_0152 NC_009698.1 132504 133310 D identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268; hypothetical protein 132504..133310 Clostridium botulinum A str. Hall 5400340 YP_001386064.1 CDS CLC_0153 NC_009698.1 133330 134076 D hypothetical protein 133330..134076 Clostridium botulinum A str. Hall 5401541 YP_001386065.1 CDS CLC_0154 NC_009698.1 134301 135683 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 134301..135683 Clostridium botulinum A str. Hall 5398319 YP_001386066.1 CDS CLC_0155 NC_009698.1 135870 137144 D identified by match to protein family HMM PF01547; sugar-binding protein 135870..137144 Clostridium botulinum A str. Hall 5400662 YP_001386067.1 CDS CLC_0156 NC_009698.1 137246 138361 R identified by match to protein family HMM PF00534; mannosyltransferase complement(137246..138361) Clostridium botulinum A str. Hall 5400968 YP_001386068.1 CDS CLC_0157 NC_009698.1 138527 139537 D identified by match to protein family HMM TIGR02906; spore coat protein 138527..139537 Clostridium botulinum A str. Hall 5398617 YP_001386069.1 CDS CLC_0158 NC_009698.1 139552 139746 D identified by Glimmer3; hypothetical protein 139552..139746 Clostridium botulinum A str. Hall 5401059 YP_001386070.1 CDS CLC_0159 NC_009698.1 139773 140540 D hypothetical protein 139773..140540 Clostridium botulinum A str. Hall 5400565 YP_001386071.1 CDS CLC_0160 NC_009698.1 140553 141566 D identified by match to protein family HMM TIGR02906; spore coat protein 140553..141566 Clostridium botulinum A str. Hall 5399640 YP_001386072.1 CDS CLC_0161 NC_009698.1 141921 143048 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(141921..143048) Clostridium botulinum A str. Hall 5398244 YP_001386073.1 CDS cotS NC_009698.1 143165 144169 D identified by match to protein family HMM TIGR02906; spore coat protein CotS 143165..144169 Clostridium botulinum A str. Hall 5400251 YP_001386074.1 CDS CLC_0163 NC_009698.1 144293 145195 D identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855; peptidase 144293..145195 Clostridium botulinum A str. Hall 5399258 YP_001386075.1 CDS CLC_0164 NC_009698.1 145391 145627 D identified by match to protein family HMM PF06257; hypothetical protein 145391..145627 Clostridium botulinum A str. Hall 5399920 YP_001386076.1 CDS CLC_0165 NC_009698.1 145731 147293 D identified by match to protein family HMM PF01476; LysM domain-containing protein 145731..147293 Clostridium botulinum A str. Hall 5399766 YP_001386077.1 CDS CLC_0166 NC_009698.1 147590 147703 D identified by Glimmer3; hypothetical protein 147590..147703 Clostridium botulinum A str. Hall 5399443 YP_001386078.1 CDS cphB NC_009698.1 147673 148473 D identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069; cyanophycinase 147673..148473 Clostridium botulinum A str. Hall 5399664 YP_001386079.1 CDS cphA NC_009698.1 148517 151138 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 148517..151138 Clostridium botulinum A str. Hall 5399704 YP_001386080.1 CDS ipk NC_009698.1 151231 152073 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 151231..152073 Clostridium botulinum A str. Hall 5398884 YP_001386081.1 CDS CLC_0170 NC_009698.1 152239 152436 D identified by Glimmer3; hypothetical protein 152239..152436 Clostridium botulinum A str. Hall 5398265 YP_001386082.1 CDS CLC_0171 NC_009698.1 152496 154016 D identified by match to protein family HMM PF03323; spore germination protein 152496..154016 Clostridium botulinum A str. Hall 5401119 YP_001386083.1 CDS CLC_0172 NC_009698.1 154036 155133 D identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 154036..155133 Clostridium botulinum A str. Hall 5398563 YP_001386084.1 CDS CLC_0173 NC_009698.1 155183 156364 D identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; Ger(x)C family germination protein 155183..156364 Clostridium botulinum A str. Hall 5401231 YP_001386085.1 CDS CLC_0174 NC_009698.1 156437 157069 D identified by match to protein family HMM TIGR02837; stage II sporulation protein R 156437..157069 Clostridium botulinum A str. Hall 5399201 YP_001386086.1 CDS CLC_0175 NC_009698.1 157106 158347 R identified by match to protein family HMM PF04101; match to protein family HMM PF06925; hypothetical protein complement(157106..158347) Clostridium botulinum A str. Hall 5400851 YP_001386087.1 CDS ypeB NC_009698.1 158720 160090 D identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889; germination protein YpeB 158720..160090 Clostridium botulinum A str. Hall 5399681 YP_001386088.1 CDS CLC_0177 NC_009698.1 160193 161173 D identified by match to protein family HMM PF02568; hypothetical protein 160193..161173 Clostridium botulinum A str. Hall 5401399 YP_001386089.1 CDS CLC_0178 NC_009698.1 161198 161626 D identified by match to protein family HMM PF09148; hypothetical protein 161198..161626 Clostridium botulinum A str. Hall 5398698 YP_001386090.1 CDS CLC_0179 NC_009698.1 161758 162057 D hypothetical protein 161758..162057 Clostridium botulinum A str. Hall 5400110 YP_001386091.1 CDS pyrG NC_009698.1 162291 163892 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 162291..163892 Clostridium botulinum A str. Hall 5398352 YP_001386092.1 CDS CLC_0181 NC_009698.1 164340 164684 D hypothetical protein 164340..164684 Clostridium botulinum A str. Hall 5398424 YP_001386093.1 CDS rho NC_009698.1 164856 166301 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 164856..166301 Clostridium botulinum A str. Hall 5400490 YP_001386094.1 CDS rpmE NC_009698.1 166341 166559 R identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 complement(166341..166559) Clostridium botulinum A str. Hall 5399154 YP_001386095.1 CDS tdk NC_009698.1 166786 167361 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 166786..167361 Clostridium botulinum A str. Hall 5399142 YP_001386096.1 CDS CLC_0185 NC_009698.1 167378 168295 D identified by match to protein family HMM PF07136; hypothetical protein 167378..168295 Clostridium botulinum A str. Hall 5398791 YP_001386097.1 CDS hemK NC_009698.1 168303 169154 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protein-(glutamine-N5) methyltransferase 168303..169154 Clostridium botulinum A str. Hall 5400710 YP_001386098.1 CDS prfA NC_009698.1 169236 170312 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 169236..170312 Clostridium botulinum A str. Hall 5401331 YP_001386099.1 CDS CLC_0188 NC_009698.1 170340 170948 D hypothetical protein 170340..170948 Clostridium botulinum A str. Hall 5401505 YP_001386100.1 CDS CLC_0189 NC_009698.1 171008 171727 D identified by match to protein family HMM PF02535; ZIP transporter family protein 171008..171727 Clostridium botulinum A str. Hall 5399111 YP_001386101.1 CDS CLC_0190 NC_009698.1 171748 172803 D identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 171748..172803 Clostridium botulinum A str. Hall 5398770 YP_001386102.1 CDS CLC_0191 NC_009698.1 172812 173264 D identified by match to protein family HMM PF01451; low molecular weight protein tyrosine phosphatase 172812..173264 Clostridium botulinum A str. Hall 5399542 YP_001386103.1 CDS rpiB NC_009698.1 173324 173761 D catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 173324..173761 Clostridium botulinum A str. Hall 5399061 YP_001386104.1 CDS upp NC_009698.1 173791 174420 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 173791..174420 Clostridium botulinum A str. Hall 5398716 YP_001386105.1 CDS CLC_0194 NC_009698.1 174927 175415 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 174927..175415 Clostridium botulinum A str. Hall 5400667 YP_001386106.1 CDS tagO NC_009698.1 175523 176557 D identified by match to protein family HMM PF00953; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase 175523..176557 Clostridium botulinum A str. Hall 5400645 YP_001386107.1 CDS mnaA NC_009698.1 176571 177728 D identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 176571..177728 Clostridium botulinum A str. Hall 5399124 YP_001386108.1 CDS CLC_0197 NC_009698.1 178220 178588 D ATP synthase I 178220..178588 Clostridium botulinum A str. Hall 5400605 YP_001386109.1 CDS atpB NC_009698.1 178603 179283 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 178603..179283 Clostridium botulinum A str. Hall 5399169 YP_001386110.1 CDS atpE NC_009698.1 179323 179562 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 179323..179562 Clostridium botulinum A str. Hall 5398971 YP_001386111.1 CDS atpF NC_009698.1 179638 180117 D produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B 179638..180117 Clostridium botulinum A str. Hall 5399977 YP_001386112.1 CDS atpH NC_009698.1 180120 180659 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 180120..180659 Clostridium botulinum A str. Hall 5400765 YP_001386113.1 CDS atpA NC_009698.1 180670 182184 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 180670..182184 Clostridium botulinum A str. Hall 5399333 YP_001386114.1 CDS atpG NC_009698.1 182206 183054 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 182206..183054 Clostridium botulinum A str. Hall 5400528 YP_001386115.1 CDS atpD NC_009698.1 183068 184459 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 183068..184459 Clostridium botulinum A str. Hall 5399395 YP_001386116.1 CDS atpC NC_009698.1 184484 184885 D produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 184484..184885 Clostridium botulinum A str. Hall 5400235 YP_001386117.1 CDS CLC_0206 NC_009698.1 185078 185785 D hypothetical protein 185078..185785 Clostridium botulinum A str. Hall 5398787 YP_001386118.1 CDS murA-1 NC_009698.1 185809 187065 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 185809..187065 Clostridium botulinum A str. Hall 5400074 YP_001386119.1 CDS spoIID NC_009698.1 187335 188411 D identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870; stage II sporulation protein D 187335..188411 Clostridium botulinum A str. Hall 5398784 YP_001386120.1 CDS CLC_0209 NC_009698.1 188943 189689 D identified by match to protein family HMM PF01551; peptidase 188943..189689 Clostridium botulinum A str. Hall 5400986 YP_001386121.1 CDS spoIIID NC_009698.1 189797 190051 D identified by match to protein family HMM TIGR02844; stage III sporulation protein D 189797..190051 Clostridium botulinum A str. Hall 5401114 YP_001386122.1 CDS CLC_0211 NC_009698.1 190151 191179 D identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 190151..191179 Clostridium botulinum A str. Hall 5398809 YP_001386123.1 CDS CLC_0212 NC_009698.1 191304 191828 R identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; hypothetical protein complement(191304..191828) Clostridium botulinum A str. Hall 5399491 YP_001386124.1 CDS CLC_0213 NC_009698.1 191877 192599 R identified by match to protein family HMM PF01171; hypothetical protein complement(191877..192599) Clostridium botulinum A str. Hall 5399883 YP_001386125.1 CDS metK NC_009698.1 193580 194755 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 193580..194755 Clostridium botulinum A str. Hall 5399403 YP_001386126.1 CDS CLC_0223 NC_009698.1 194946 197180 D identified by match to protein family HMM TIGR01448; recombinase D 194946..197180 Clostridium botulinum A str. Hall 5401069 YP_001386127.1 CDS CLC_0224 NC_009698.1 197206 198228 D hypothetical protein 197206..198228 Clostridium botulinum A str. Hall 5401030 YP_001386128.1 CDS CLC_0225 NC_009698.1 198201 198878 D identified by match to protein family HMM PF00156; ComF-like protein 198201..198878 Clostridium botulinum A str. Hall 5400876 YP_001386129.1 CDS yfiA NC_009698.1 199303 199830 D identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 199303..199830 Clostridium botulinum A str. Hall 5399187 YP_001386130.1 CDS secA NC_009698.1 200058 202565 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 200058..202565 Clostridium botulinum A str. Hall 5398526 YP_001386131.1 CDS prfB NC_009698.1 202929 203906 D catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 202929..203906 Clostridium botulinum A str. Hall 5401833 YP_001386132.1 CDS CLC_0229 NC_009698.1 204027 205391 R identified by match to protein family HMM PF04389; peptidase complement(204027..205391) Clostridium botulinum A str. Hall 5400550 YP_001386133.1 CDS CLC_0230 NC_009698.1 205499 207655 D identified by match to protein family HMM PF00575; RNA-binding protein 205499..207655 Clostridium botulinum A str. Hall 5400685 YP_001386134.1 CDS CLC_0231 NC_009698.1 207939 208532 D hypothetical protein 207939..208532 Clostridium botulinum A str. Hall 5400359 YP_001386135.1 CDS CLC_0232 NC_009698.1 208943 210592 D hypothetical protein 208943..210592 Clostridium botulinum A str. Hall 5399607 YP_001386136.1 CDS CLC_0233 NC_009698.1 210613 210873 D hypothetical protein 210613..210873 Clostridium botulinum A str. Hall 5400151 YP_001386137.1 CDS CLC_0234 NC_009698.1 210887 211573 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 210887..211573 Clostridium botulinum A str. Hall 5401365 YP_001386138.1 CDS CLC_0235 NC_009698.1 211657 211938 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 211657..211938 Clostridium botulinum A str. Hall 5399464 YP_001386139.1 CDS CLC_0236 NC_009698.1 211978 214431 D identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 211978..214431 Clostridium botulinum A str. Hall 5401316 YP_001386140.1 CDS CLC_0237 NC_009698.1 214459 215313 R hypothetical protein complement(214459..215313) Clostridium botulinum A str. Hall 5398441 YP_001386141.1 CDS CLC_0238 NC_009698.1 215470 216258 D identified by match to protein family HMM PF04607; RelA/SpoT domain-containing protein 215470..216258 Clostridium botulinum A str. Hall 5401476 YP_001386143.1 CDS leuS NC_009698.1 216561 219002 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(216561..219002) Clostridium botulinum A str. Hall 5400866 YP_001386144.1 CDS CLC_0241 NC_009698.1 219379 219783 R identified by match to protein family HMM PF00581; hypothetical protein complement(219379..219783) Clostridium botulinum A str. Hall 5398800 YP_001386145.1 CDS CLC_0244 NC_009698.1 220097 220621 R hypothetical protein complement(220097..220621) Clostridium botulinum A str. Hall 5401429 YP_001386146.1 CDS CLC_0245 NC_009698.1 220646 221245 R identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ family molecular chaperone complement(220646..221245) Clostridium botulinum A str. Hall 5400930 YP_001386147.1 CDS CLC_0247 NC_009698.1 222110 222649 R identified by match to protein family HMM PF01928; adenylyl cyclase CyaB complement(222110..222649) Clostridium botulinum A str. Hall 5399810 YP_001386148.1 CDS CLC_0248 NC_009698.1 222956 223993 D hypothetical protein 222956..223993 Clostridium botulinum A str. Hall 5399570 YP_001386149.1 CDS fba NC_009698.1 224266 225192 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase complement(224266..225192) Clostridium botulinum A str. Hall 5399835 YP_001386150.1 CDS CLC_0250 NC_009698.1 225418 225702 R hypothetical protein complement(225418..225702) Clostridium botulinum A str. Hall 5398486 YP_001386151.1 CDS CLC_0251 NC_009698.1 225819 226487 R identified by match to protein family HMM PF04239; hypothetical protein complement(225819..226487) Clostridium botulinum A str. Hall 5399019 YP_001386152.1 CDS CLC_0252 NC_009698.1 226612 228270 D identified by match to protein family HMM PF00485; threonyl-tRNA synthetase/uridine kinase 226612..228270 Clostridium botulinum A str. Hall 5399591 YP_001386153.1 CDS CLC_0253 NC_009698.1 228408 228539 D identified by Glimmer3; hypothetical protein 228408..228539 Clostridium botulinum A str. Hall 5400838 YP_001386154.1 CDS pssA NC_009698.1 228640 229161 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(228640..229161) Clostridium botulinum A str. Hall 5398574 YP_001386155.1 CDS CLC_0255 NC_009698.1 229348 229764 D identified by match to protein family HMM PF00571; hypothetical protein 229348..229764 Clostridium botulinum A str. Hall 5398752 YP_001386156.1 CDS CLC_0256 NC_009698.1 229870 230754 D similar to YegS from E. coli; lipid kinase 229870..230754 Clostridium botulinum A str. Hall 5400520 YP_001386157.1 CDS CLC_0257 NC_009698.1 230828 231472 D hypothetical protein 230828..231472 Clostridium botulinum A str. Hall 5398949 YP_001386158.1 CDS CLC_0258 NC_009698.1 231564 233501 R identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein complement(231564..233501) Clostridium botulinum A str. Hall 5400404 YP_001386159.1 CDS CLC_0259 NC_009698.1 234096 235361 D identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239; PRC-barrel domain/MgtE domain/CBS domain-containing protein 234096..235361 Clostridium botulinum A str. Hall 5399289 YP_001386160.1 CDS sleB NC_009698.1 235591 236286 D identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869; spore-cortex-lytic enzyme 235591..236286 Clostridium botulinum A str. Hall 5400663 YP_001386161.1 CDS cysK-1 NC_009698.1 236650 237564 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 236650..237564 Clostridium botulinum A str. Hall 5401170 YP_001386162.1 CDS cysE NC_009698.1 237579 238175 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 237579..238175 Clostridium botulinum A str. Hall 5399302 YP_001386163.1 CDS CLC_0263 NC_009698.1 238197 239162 D identified by match to protein family HMM PF00037; match to protein family HMM PF08331; (Fe-S)-binding protein 238197..239162 Clostridium botulinum A str. Hall 5400700 YP_001386164.1 CDS CLC_0264 NC_009698.1 239310 240011 D identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 239310..240011 Clostridium botulinum A str. Hall 5401588 YP_001386165.1 CDS nth NC_009698.1 240104 240745 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 240104..240745 Clostridium botulinum A str. Hall 5400455 YP_001386166.1 CDS CLC_0266 NC_009698.1 241079 242251 D identified by match to protein family HMM PF00390; match to protein family HMM PF03949; malic enzyme 241079..242251 Clostridium botulinum A str. Hall 5401239 YP_001386167.1 CDS CLC_0267 NC_009698.1 242278 243507 R identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A complement(242278..243507) Clostridium botulinum A str. Hall 5399069 YP_001386168.1 CDS CLC_0268 NC_009698.1 243533 244516 R hypothetical protein complement(243533..244516) Clostridium botulinum A str. Hall 5399794 YP_001386169.1 CDS CLC_0269 NC_009698.1 244626 245660 R identified by match to protein family HMM PF05343; glutamyl aminopeptidase complement(244626..245660) Clostridium botulinum A str. Hall 5401556 YP_001386170.1 CDS CLC_0270 NC_009698.1 245812 246948 D identified by match to protein family HMM PF04294; von Willebrand factor A 245812..246948 Clostridium botulinum A str. Hall 5398953 YP_001386171.1 CDS CLC_0271 NC_009698.1 247153 248505 D identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 247153..248505 Clostridium botulinum A str. Hall 5401315 YP_001386172.1 CDS splB NC_009698.1 248652 249659 D identified by match to protein family HMM PF04055; spore photoproduct lyase 248652..249659 Clostridium botulinum A str. Hall 5400643 YP_001386173.1 CDS CLC_0273 NC_009698.1 249787 250254 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; hypothetical protein 249787..250254 Clostridium botulinum A str. Hall 5399168 YP_001386174.1 CDS CLC_0274 NC_009698.1 250267 251106 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 250267..251106 Clostridium botulinum A str. Hall 5401609 YP_001386175.1 CDS CLC_0275 NC_009698.1 251400 252503 D identified by match to protein family HMM PF02608; Bmp family lipoprotein 251400..252503 Clostridium botulinum A str. Hall 5398459 YP_001386176.1 CDS CLC_0276 NC_009698.1 252669 254219 D identified by match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein 252669..254219 Clostridium botulinum A str. Hall 5399904 YP_001386177.1 CDS CLC_0277 NC_009698.1 254221 255324 D identified by match to protein family HMM PF02653; sugar ABC transporter permease 254221..255324 Clostridium botulinum A str. Hall 5398680 YP_001386178.1 CDS CLC_0278 NC_009698.1 255317 256243 D identified by match to protein family HMM PF02653; sugar ABC transporter permease 255317..256243 Clostridium botulinum A str. Hall 5399709 YP_001386179.1 CDS CLC_0279 NC_009698.1 256355 257080 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 256355..257080 Clostridium botulinum A str. Hall 5400175 YP_001386180.1 CDS rpoN NC_009698.1 257409 258782 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 257409..258782 Clostridium botulinum A str. Hall 5399873 YP_001386181.1 CDS cggR NC_009698.1 259070 260101 D identified by match to protein family HMM PF04198; central glycolytic genes regulator 259070..260101 Clostridium botulinum A str. Hall 5399543 YP_001386182.1 CDS gap-1 NC_009698.1 260179 261186 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 260179..261186 Clostridium botulinum A str. Hall 5401338 YP_001386183.1 CDS pgk NC_009698.1 261483 262679 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 261483..262679 Clostridium botulinum A str. Hall 5400065 YP_001386184.1 CDS tpiA NC_009698.1 262741 263487 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 262741..263487 Clostridium botulinum A str. Hall 5400030 YP_001386185.1 CDS gpmI NC_009698.1 263579 265108 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 263579..265108 Clostridium botulinum A str. Hall 5400999 YP_001386186.1 CDS eno NC_009698.1 265164 266459 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 265164..266459 Clostridium botulinum A str. Hall 5400188 YP_001386187.1 CDS secG NC_009698.1 266682 266915 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 266682..266915 Clostridium botulinum A str. Hall 5401378 YP_001386188.1 CDS rnr NC_009698.1 267124 269301 D identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 267124..269301 Clostridium botulinum A str. Hall 5398708 YP_001386189.1 CDS surE NC_009698.1 269710 270468 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 269710..270468 Clostridium botulinum A str. Hall 5399786 YP_001386190.1 CDS smpB NC_009698.1 270725 271195 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 270725..271195 Clostridium botulinum A str. Hall 5400804 YP_001386191.1 CDS CLC_0291 NC_009698.1 271334 272497 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(271334..272497) Clostridium botulinum A str. Hall 5398674 YP_001386192.1 CDS CLC_0293 NC_009698.1 274432 275763 D identified by match to protein family HMM PF01565; match to protein family HMM PF08031; FAD-binding protein 274432..275763 Clostridium botulinum A str. Hall 5401184 YP_001386194.1 CDS CLC_0296 NC_009698.1 276442 276600 D identified by Glimmer3; hypothetical protein 276442..276600 Clostridium botulinum A str. Hall 5401729 YP_001386195.1 CDS CLC_0297 NC_009698.1 276614 276763 R identified by Glimmer3; hypothetical protein complement(276614..276763) Clostridium botulinum A str. Hall 5398850 YP_001386196.1 CDS CLC_0299 NC_009698.1 277738 279162 D identified by match to protein family HMM PF00282; amino acid decarboxylase 277738..279162 Clostridium botulinum A str. Hall 5400961 YP_001386197.1 CDS CLC_0300 NC_009698.1 279350 280201 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein 279350..280201 Clostridium botulinum A str. Hall 5400869 YP_001386198.1 CDS CLC_0301 NC_009698.1 280560 282179 D identified by match to protein family HMM PF01569; vanadium-dependent haloperoxidase 280560..282179 Clostridium botulinum A str. Hall 5401707 YP_001386199.1 CDS CLC_0302 NC_009698.1 282563 283222 D identified by match to protein family HMM PF07883; hypothetical protein 282563..283222 Clostridium botulinum A str. Hall 5399672 YP_001386200.1 CDS CLC_0303 NC_009698.1 283563 284672 D hypothetical protein 283563..284672 Clostridium botulinum A str. Hall 5400501 YP_001386201.1 CDS CLC_0304 NC_009698.1 285174 286346 D identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949; malic enzyme 285174..286346 Clostridium botulinum A str. Hall 5399838 YP_001386202.1 CDS kdgT NC_009698.1 286558 287532 D transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 286558..287532 Clostridium botulinum A str. Hall 5401689 YP_001386203.1 CDS CLC_0306 NC_009698.1 287746 289368 D identified by match to protein family HMM PF02518; sensor histidine kinase 287746..289368 Clostridium botulinum A str. Hall 5398832 YP_001386204.1 CDS CLC_0307 NC_009698.1 289346 290020 D identified by match to protein family HMM PF00072; response regulator 289346..290020 Clostridium botulinum A str. Hall 5398571 YP_001386205.1 CDS lysP NC_009698.1 290577 292040 D identified by match to protein family HMM PF00324; lysine-specific permease 290577..292040 Clostridium botulinum A str. Hall 5400618 YP_001386206.1 CDS CLC_0309 NC_009698.1 292584 293318 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 292584..293318 Clostridium botulinum A str. Hall 5401227 YP_001386207.1 CDS CLC_0310 NC_009698.1 293432 293944 D identified by match to protein family HMM PF00583; acetyltransferase 293432..293944 Clostridium botulinum A str. Hall 5400017 YP_001386208.1 CDS CLC_0311 NC_009698.1 293970 294347 D identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 293970..294347 Clostridium botulinum A str. Hall 5401411 YP_001386209.1 CDS CLC_0312 NC_009698.1 294506 295408 D identified by match to protein family HMM PF00583; acetyltransferase 294506..295408 Clostridium botulinum A str. Hall 5399876 YP_001386210.1 CDS CLC_0313 NC_009698.1 295434 295958 D identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein 295434..295958 Clostridium botulinum A str. Hall 5400377 YP_001386211.1 CDS CLC_0314 NC_009698.1 296021 296950 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 296021..296950 Clostridium botulinum A str. Hall 5400864 YP_001386213.1 CDS CLC_0316 NC_009698.1 297451 298125 R identified by match to protein family HMM PF00857; isochorismate family protein complement(297451..298125) Clostridium botulinum A str. Hall 5399032 YP_001386214.1 CDS CLC_0317 NC_009698.1 298552 300882 D identified by match to protein family HMM PF01315; match to protein family HMM PF02738; xanthine dehydrogenase, molybdopterin-binding subunit 298552..300882 Clostridium botulinum A str. Hall 5400814 YP_001386215.1 CDS CLC_0318 NC_009698.1 300882 301721 D identified by match to protein family HMM PF00941; xanthine dehydrogenase, FAD-binding subunit 300882..301721 Clostridium botulinum A str. Hall 5400778 YP_001386216.1 CDS CLC_0319 NC_009698.1 301718 302191 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur-binding subunit 301718..302191 Clostridium botulinum A str. Hall 5401559 YP_001386217.1 CDS CLC_0320 NC_009698.1 302548 303018 D identified by Glimmer3; hypothetical protein 302548..303018 Clostridium botulinum A str. Hall 5400170 YP_001386218.1 CDS CLC_0322 NC_009698.1 303733 304299 D identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thiol-disulfide oxidoreductase ResA 303733..304299 Clostridium botulinum A str. Hall 5399120 YP_001386219.1 CDS CLC_0323 NC_009698.1 304324 305001 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 304324..305001 Clostridium botulinum A str. Hall 5401369 YP_001386220.1 CDS CLC_0324 NC_009698.1 304973 306391 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 304973..306391 Clostridium botulinum A str. Hall 5399377 YP_001386221.1 CDS glvA-1 NC_009698.1 308150 309475 D identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 308150..309475 Clostridium botulinum A str. Hall 5400289 YP_001386222.1 CDS CLC_0327 NC_009698.1 309638 311161 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system maltose/glucose-specfic transporter subunit IIBC 309638..311161 Clostridium botulinum A str. Hall 5400950 YP_001386223.1 CDS CLC_0328 NC_009698.1 311212 311979 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(311212..311979) Clostridium botulinum A str. Hall 5400648 YP_001386224.1 CDS CLC_0329 NC_009698.1 311995 312774 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(311995..312774) Clostridium botulinum A str. Hall 5400260 YP_001386225.1 CDS CLC_0330 NC_009698.1 313050 313532 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose family transporter subunit IIA 313050..313532 Clostridium botulinum A str. Hall 5398432 YP_001386226.1 CDS CLC_0331 NC_009698.1 313630 314406 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 313630..314406 Clostridium botulinum A str. Hall 5400087 YP_001386227.1 CDS CLC_0332 NC_009698.1 314416 315465 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 314416..315465 Clostridium botulinum A str. Hall 5400723 YP_001386228.1 CDS CLC_0333 NC_009698.1 315585 316355 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 315585..316355 Clostridium botulinum A str. Hall 5401674 YP_001386229.1 CDS CLC_0334 NC_009698.1 316369 318339 D identified by match to protein family HMM PF02687; peptide ABC transporter permease 316369..318339 Clostridium botulinum A str. Hall 5399831 YP_001386230.1 CDS alr NC_009698.1 318579 319793 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 318579..319793 Clostridium botulinum A str. Hall 5400172 YP_001386231.1 CDS CLC_0336 NC_009698.1 320313 321884 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system glucose/glucoside family transporter subunit IIBC 320313..321884 Clostridium botulinum A str. Hall 5401413 YP_001386232.1 CDS glvA-2 NC_009698.1 322200 323525 D identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 322200..323525 Clostridium botulinum A str. Hall 5398653 YP_001386233.1 CDS CLC_0338 NC_009698.1 323839 324348 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose/glucoside family transporter subunit IIA 323839..324348 Clostridium botulinum A str. Hall 5398292 YP_001386234.1 CDS CLC_0339 NC_009698.1 324631 325392 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; SIS domain-containing protein 324631..325392 Clostridium botulinum A str. Hall 5401746 YP_001386235.1 CDS CLC_0340 NC_009698.1 325429 325611 R hypothetical protein complement(325429..325611) Clostridium botulinum A str. Hall 5400263 YP_001386236.1 CDS CLC_0341 NC_009698.1 325880 326077 D identified by match to protein family HMM PF00313; cold shock protein 325880..326077 Clostridium botulinum A str. Hall 5401041 YP_001386237.1 CDS CLC_0342 NC_009698.1 326420 326974 D identified by match to protein family HMM PF06210; hypothetical protein 326420..326974 Clostridium botulinum A str. Hall 5400495 YP_001386238.1 CDS CLC_0343 NC_009698.1 327409 327840 D identified by match to protein family HMM PF02082; rrf2 family protein 327409..327840 Clostridium botulinum A str. Hall 5400300 YP_001386239.1 CDS CLC_0344 NC_009698.1 327992 328597 D identified by match to protein family HMM PF01323; 2-hydroxychromene-2-carboxylate isomerase 327992..328597 Clostridium botulinum A str. Hall 5398257 YP_001386240.1 CDS CLC_0345 NC_009698.1 328624 329262 D hypothetical protein 328624..329262 Clostridium botulinum A str. Hall 5400651 YP_001386241.1 CDS CLC_0346 NC_009698.1 329700 330461 D identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator 329700..330461 Clostridium botulinum A str. Hall 5399802 YP_001386242.1 CDS CLC_0347 NC_009698.1 330580 332163 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system glucose/maltose-specfic transporter subunit IIBC 330580..332163 Clostridium botulinum A str. Hall 5400982 YP_001386243.1 CDS glvA-3 NC_009698.1 332425 333759 D identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 332425..333759 Clostridium botulinum A str. Hall 5401275 YP_001386244.1 CDS CLC_0349 NC_009698.1 333772 334245 D identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose/maltose-specific transporter subunit IIA 333772..334245 Clostridium botulinum A str. Hall 5401320 YP_001386245.1 CDS ilvD NC_009698.1 334383 336098 D identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 334383..336098 Clostridium botulinum A str. Hall 5401129 YP_001386246.1 CDS eda NC_009698.1 336150 336797 D identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 336150..336797 Clostridium botulinum A str. Hall 5399432 YP_001386247.1 CDS CLC_0352 NC_009698.1 336799 337803 D identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase 336799..337803 Clostridium botulinum A str. Hall 5400781 YP_001386248.2 CDS ade NC_009698.1 338063 339862 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase 338063..339862 Clostridium botulinum A str. Hall 5401557 YP_001386249.1 CDS CLC_0354 NC_009698.1 340264 340941 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 340264..340941 Clostridium botulinum A str. Hall 5400658 YP_001386250.1 CDS CLC_0355 NC_009698.1 340941 342326 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 340941..342326 Clostridium botulinum A str. Hall 5400042 YP_001386251.1 CDS CLC_0356 NC_009698.1 342723 343691 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 342723..343691 Clostridium botulinum A str. Hall 5401801 YP_001386252.1 CDS CLC_0357 NC_009698.1 343675 344094 D identified by match to protein family HMM PF04138; cell wall teichoic acid glycosylation protein GtcA 343675..344094 Clostridium botulinum A str. Hall 5401048 YP_001386253.1 CDS CLC_0358 NC_009698.1 344213 346486 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 344213..346486 Clostridium botulinum A str. Hall 5400423 YP_001386254.1 CDS CLC_0359 NC_009698.1 346827 347864 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 346827..347864 Clostridium botulinum A str. Hall 5401297 YP_001386255.1 CDS CLC_0360 NC_009698.1 348128 349159 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 348128..349159 Clostridium botulinum A str. Hall 5399837 YP_001386256.1 CDS CLC_0361 NC_009698.1 349162 350280 D identified by match to protein family HMM PF01032; iron ABC transporter permease 349162..350280 Clostridium botulinum A str. Hall 5399514 YP_001386257.1 CDS CLC_0362 NC_009698.1 350282 351052 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 350282..351052 Clostridium botulinum A str. Hall 5399457 YP_001386258.1 CDS CLC_0363 NC_009698.1 351087 352415 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 351087..352415 Clostridium botulinum A str. Hall 5401829 YP_001386259.1 CDS CLC_0364 NC_009698.1 352560 353531 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(352560..353531) Clostridium botulinum A str. Hall 5398620 YP_001386260.1 CDS CLC_0365 NC_009698.1 353978 354916 D identified by similarity to SP:P37580; match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 353978..354916 Clostridium botulinum A str. Hall 5400025 YP_001386261.1 CDS CLC_0366 NC_009698.1 354977 355093 D identified by Glimmer3; hypothetical protein 354977..355093 Clostridium botulinum A str. Hall 5399817 YP_001386262.1 CDS CLC_0367 NC_009698.1 355255 356223 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(355255..356223) Clostridium botulinum A str. Hall 5401330 YP_001386263.1 CDS CLC_0368 NC_009698.1 356541 357470 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 356541..357470 Clostridium botulinum A str. Hall 5398750 YP_001386264.1 CDS CLC_0369 NC_009698.1 357497 358525 D identified by match to protein family HMM PF01032; iron ABC transporter permease 357497..358525 Clostridium botulinum A str. Hall 5400287 YP_001386265.1 CDS CLC_0370 NC_009698.1 358522 359535 D identified by match to protein family HMM PF01032; iron ABC transporter permease 358522..359535 Clostridium botulinum A str. Hall 5400945 YP_001386266.1 CDS CLC_0371 NC_009698.1 359546 360376 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 359546..360376 Clostridium botulinum A str. Hall 5399610 YP_001386267.1 CDS CLC_0372 NC_009698.1 360373 362097 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 360373..362097 Clostridium botulinum A str. Hall 5398258 YP_001386268.1 CDS CLC_0373 NC_009698.1 362151 362531 R identified by match to protein family HMM PF01325; iron-dependent repressor complement(362151..362531) Clostridium botulinum A str. Hall 5399750 YP_001386269.1 CDS CLC_0374 NC_009698.1 363230 364531 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine/uracil permease 363230..364531 Clostridium botulinum A str. Hall 5399418 YP_001386270.1 CDS xpt-1 NC_009698.1 364554 365126 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 364554..365126 Clostridium botulinum A str. Hall 5399106 YP_001386271.1 CDS CLC_0376 NC_009698.1 365577 366269 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 365577..366269 Clostridium botulinum A str. Hall 5400756 YP_001386272.1 CDS CLC_0377 NC_009698.1 366282 367262 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 366282..367262 Clostridium botulinum A str. Hall 5399223 YP_001386273.1 CDS CLC_0378 NC_009698.1 367438 368295 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 367438..368295 Clostridium botulinum A str. Hall 5399082 YP_001386274.1 CDS CLC_0379 NC_009698.1 368310 369056 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 368310..369056 Clostridium botulinum A str. Hall 5400233 YP_001386275.1 CDS CLC_0380 NC_009698.1 369056 370918 D identified by match to protein family HMM PF02687; peptide ABC transporter permease 369056..370918 Clostridium botulinum A str. Hall 5399009 YP_001386276.1 CDS CLC_0381 NC_009698.1 370942 371088 D identified by Glimmer3; hypothetical protein 370942..371088 Clostridium botulinum A str. Hall 5398742 YP_001386277.1 CDS CLC_0382 NC_009698.1 371402 371758 D identified by match to protein family HMM PF03788; LrgA family protein 371402..371758 Clostridium botulinum A str. Hall 5398451 YP_001386278.1 CDS CLC_0383 NC_009698.1 371761 372456 D identified by match to protein family HMM PF04172; lrgB-like family protein 371761..372456 Clostridium botulinum A str. Hall 5399349 YP_001386279.1 CDS CLC_0384 NC_009698.1 372752 373402 D lipoprotein 372752..373402 Clostridium botulinum A str. Hall 5401811 YP_001386280.1 CDS CLC_0385 NC_009698.1 373786 374685 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 373786..374685 Clostridium botulinum A str. Hall 5401407 YP_001386281.1 CDS CLC_0386 NC_009698.1 374820 376328 D identified by match to protein family HMM PF08903; hypothetical protein 374820..376328 Clostridium botulinum A str. Hall 5400840 YP_001386282.1 CDS CLC_0387 NC_009698.1 376652 377203 D hypothetical protein 376652..377203 Clostridium botulinum A str. Hall 5401107 YP_001386283.1 CDS CLC_0388 NC_009698.1 377382 377849 D hypothetical protein 377382..377849 Clostridium botulinum A str. Hall 5399571 YP_001386284.1 CDS CLC_0389 NC_009698.1 377842 378531 D identified by match to protein family HMM PF04647; accessory gene regulator protein B 377842..378531 Clostridium botulinum A str. Hall 5400249 YP_001386285.1 CDS CLC_0390 NC_009698.1 378515 378649 D lipoprotein 378515..378649 Clostridium botulinum A str. Hall 5401089 YP_001386286.1 CDS CLC_0391 NC_009698.1 378721 380424 D identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254; diguanylate cyclase 378721..380424 Clostridium botulinum A str. Hall 5401815 YP_001386287.1 CDS CLC_0392 NC_009698.1 380655 381164 D identified by match to protein family HMM PF00583; acetyltransferase 380655..381164 Clostridium botulinum A str. Hall 5398703 YP_001386288.1 CDS CLC_0393 NC_009698.1 381561 382013 D hypothetical protein 381561..382013 Clostridium botulinum A str. Hall 5398488 YP_001386289.1 CDS CLC_0394 NC_009698.1 382040 383887 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 382040..383887 Clostridium botulinum A str. Hall 5398894 YP_001386290.1 CDS CLC_0395 NC_009698.1 384146 384583 D hypothetical protein 384146..384583 Clostridium botulinum A str. Hall 5400354 YP_001386291.1 CDS CLC_0396 NC_009698.1 384570 385199 D identified by match to protein family HMM PF04647; accessory gene regulator protein B 384570..385199 Clostridium botulinum A str. Hall 5398312 YP_001386292.1 CDS CLC_0397 NC_009698.1 385294 385428 D identified by Glimmer3; hypothetical protein 385294..385428 Clostridium botulinum A str. Hall 5399097 YP_001386293.1 CDS CLC_0398 NC_009698.1 385509 387362 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 385509..387362 Clostridium botulinum A str. Hall 5400857 YP_001386294.1 CDS CLC_0399 NC_009698.1 387595 388461 D identified by match to protein family HMM PF01171; PP-loop family protein 387595..388461 Clostridium botulinum A str. Hall 5398482 YP_001386295.1 CDS CLC_0400 NC_009698.1 388585 389130 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein complement(388585..389130) Clostridium botulinum A str. Hall 5398726 YP_001386296.1 CDS CLC_0401 NC_009698.1 389485 390891 D identified by match to protein family HMM PF00324; amino acid permease 389485..390891 Clostridium botulinum A str. Hall 5400285 YP_001386297.1 CDS CLC_0402 NC_009698.1 391010 392092 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family metallopeptidase 391010..392092 Clostridium botulinum A str. Hall 5398611 YP_001386298.1 CDS adhE NC_009698.1 392520 395108 D identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 392520..395108 Clostridium botulinum A str. Hall 5400197 YP_001386299.1 CDS CLC_0404 NC_009698.1 395427 395714 D hypothetical protein 395427..395714 Clostridium botulinum A str. Hall 5400052 YP_001386300.1 CDS CLC_0405 NC_009698.1 395777 396367 D hypothetical protein 395777..396367 Clostridium botulinum A str. Hall 5398305 YP_001386301.1 CDS CLC_0406 NC_009698.1 396643 397122 R hypothetical protein complement(396643..397122) Clostridium botulinum A str. Hall 5398364 YP_001386302.1 CDS CLC_0407 NC_009698.1 397465 398475 R hypothetical protein complement(397465..398475) Clostridium botulinum A str. Hall 5401145 YP_001386303.1 CDS CLC_0408 NC_009698.1 398579 399106 D identified by match to protein family HMM PF01569; PAP2 family protein 398579..399106 Clostridium botulinum A str. Hall 5399297 YP_001386304.1 CDS CLC_0409 NC_009698.1 399517 400329 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 399517..400329 Clostridium botulinum A str. Hall 5399790 YP_001386305.1 CDS CLC_0410 NC_009698.1 400437 401123 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 400437..401123 Clostridium botulinum A str. Hall 5399626 YP_001386306.1 CDS CLC_0411 NC_009698.1 401133 402527 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 401133..402527 Clostridium botulinum A str. Hall 5401074 YP_001386307.1 CDS CLC_0412 NC_009698.1 402590 404080 D lipoprotein 402590..404080 Clostridium botulinum A str. Hall 5400075 YP_001386308.1 CDS CLC_0413 NC_009698.1 404124 404690 D identified by match to protein family HMM PF06962; hypothetical protein 404124..404690 Clostridium botulinum A str. Hall 5401673 YP_001386309.1 CDS CLC_0414 NC_009698.1 404716 405390 D identified by match to protein family HMM PF09335; DedA family protein 404716..405390 Clostridium botulinum A str. Hall 5399114 YP_001386310.1 CDS CLC_0415 NC_009698.1 405531 408209 R identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254; diguanylate cyclase complement(405531..408209) Clostridium botulinum A str. Hall 5398425 YP_001386311.1 CDS CLC_0416 NC_009698.1 408409 409596 R hypothetical protein complement(408409..409596) Clostridium botulinum A str. Hall 5399924 YP_001386312.1 CDS CLC_0417 NC_009698.1 409849 411189 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 409849..411189 Clostridium botulinum A str. Hall 5401736 YP_001386313.1 CDS CLC_0418 NC_009698.1 411381 411947 D identified by match to protein family HMM PF01966; HD domain-containing protein 411381..411947 Clostridium botulinum A str. Hall 5399171 YP_001386314.1 CDS CLC_0419 NC_009698.1 412259 413527 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 412259..413527 Clostridium botulinum A str. Hall 5399267 YP_001386315.1 CDS CLC_0420 NC_009698.1 413662 414984 R identified by match to protein family HMM PF00266; class V aminotransferase complement(413662..414984) Clostridium botulinum A str. Hall 5400928 YP_001386316.1 CDS CLC_0421 NC_009698.1 415371 416381 D identified by match to protein family HMM PF03601; hypothetical protein 415371..416381 Clostridium botulinum A str. Hall 5398572 YP_001386317.1 CDS CLC_0422 NC_009698.1 416512 417186 D hypothetical protein 416512..417186 Clostridium botulinum A str. Hall 5401401 YP_001386318.1 CDS CLC_0423 NC_009698.1 417132 417830 D identified by match to protein family HMM PF00486; DNA-binding response regulator 417132..417830 Clostridium botulinum A str. Hall 5398928 YP_001386319.1 CDS CLC_0424 NC_009698.1 417820 419334 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 417820..419334 Clostridium botulinum A str. Hall 5401180 YP_001386320.1 CDS CLC_0425 NC_009698.1 419442 420857 D identified by match to protein family HMM PF00474; sodium:solute symporter family protein 419442..420857 Clostridium botulinum A str. Hall 5399630 YP_001386321.1 CDS CLC_0426 NC_009698.1 422087 423406 D identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; RnfABCDGE type electron transport complex subunit C 422087..423406 Clostridium botulinum A str. Hall 5399912 YP_001386322.1 CDS CLC_0427 NC_009698.1 423429 424361 D identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 423429..424361 Clostridium botulinum A str. Hall 5400185 YP_001386323.1 CDS CLC_0428 NC_009698.1 424361 425032 D identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 424361..425032 Clostridium botulinum A str. Hall 5399209 YP_001386324.1 CDS CLC_0429 NC_009698.1 425043 425645 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 425043..425645 Clostridium botulinum A str. Hall 5399444 YP_001386325.1 CDS CLC_0430 NC_009698.1 425696 426274 D identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; RnfABCDGE type electron transport complex subunit A 425696..426274 Clostridium botulinum A str. Hall 5398795 YP_001386326.1 CDS CLC_0431 NC_009698.1 426288 427121 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 426288..427121 Clostridium botulinum A str. Hall 5399566 YP_001386327.1 CDS CLC_0432 NC_009698.1 427501 428589 D identified by match to protein family HMM PF04122; amidase 427501..428589 Clostridium botulinum A str. Hall 5398372 YP_001386328.1 CDS CLC_0433 NC_009698.1 428755 429291 R identified by match to protein family HMM PF07456; hypothetical protein complement(428755..429291) Clostridium botulinum A str. Hall 5400602 YP_001386329.1 CDS CLC_0434 NC_009698.1 429309 429701 R identified by match to protein family HMM PF07009; hypothetical protein complement(429309..429701) Clostridium botulinum A str. Hall 5399342 YP_001386330.1 CDS CLC_0435 NC_009698.1 429816 430850 R identified by match to protein family HMM PF02424; apbE family protein complement(429816..430850) Clostridium botulinum A str. Hall 5400479 YP_001386331.1 CDS CLC_0436 NC_009698.1 431698 433752 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(431698..433752) Clostridium botulinum A str. Hall 5400515 YP_001386332.1 CDS CLC_0437 NC_009698.1 434429 436159 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease complement(434429..436159) Clostridium botulinum A str. Hall 5400425 YP_001386333.1 CDS CLC_0438 NC_009698.1 436379 437434 D identified by match to protein family HMM PF06803; hypothetical protein 436379..437434 Clostridium botulinum A str. Hall 5398908 YP_001386334.1 CDS rnhA NC_009698.1 437409 437858 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 437409..437858 Clostridium botulinum A str. Hall 5398346 YP_001386335.1 CDS CLC_0440 NC_009698.1 437921 438097 D identified by Glimmer3; hypothetical protein 437921..438097 Clostridium botulinum A str. Hall 5400061 YP_001386336.1 CDS CLC_0441 NC_009698.1 438278 439582 D identified by match to protein family HMM PF00515; match to protein family HMM PF01381; TPR repeat-containing DNA binding protein 438278..439582 Clostridium botulinum A str. Hall 5401177 YP_001386337.1 CDS CLC_0442 NC_009698.1 439614 440867 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 439614..440867 Clostridium botulinum A str. Hall 5399952 YP_001386339.1 CDS CLC_0444 NC_009698.1 441348 442319 D identified by similarity to GB:AAP09991.1; hypothetical protein 441348..442319 Clostridium botulinum A str. Hall 5398821 YP_001386340.1 CDS CLC_0445 NC_009698.1 442479 442658 D identified by Glimmer3; hypothetical protein 442479..442658 Clostridium botulinum A str. Hall 5401298 YP_001386341.1 CDS CLC_0446 NC_009698.1 442689 443294 D identified by match to protein family HMM PF01965; DJ-1/PfpI family protein 442689..443294 Clostridium botulinum A str. Hall 5400850 YP_008472677.1 CDS CLC_0448 NC_009698.1 443503 444429 D hypothetical protein 443503..444429 Clostridium botulinum A str. Hall 5398515 YP_001386344.1 CDS clpB NC_009698.1 444793 447393 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; clpB protein 444793..447393 Clostridium botulinum A str. Hall 5398945 YP_001386345.1 CDS CLC_0450 NC_009698.1 448220 448684 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(448220..448684) Clostridium botulinum A str. Hall 5400726 YP_001386346.1 CDS CLC_0451 NC_009698.1 449209 449583 D hypothetical protein 449209..449583 Clostridium botulinum A str. Hall 5399834 YP_001386347.1 CDS CLC_0452 NC_009698.1 450207 451580 D identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid permease 450207..451580 Clostridium botulinum A str. Hall 5400932 YP_001386348.1 CDS CLC_0453 NC_009698.1 452018 453367 D identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid permease 452018..453367 Clostridium botulinum A str. Hall 5401280 YP_001386349.1 CDS CLC_0454 NC_009698.1 453719 454228 D identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase 453719..454228 Clostridium botulinum A str. Hall 5398427 YP_001386350.1 CDS CLC_0455 NC_009698.1 454273 455145 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 454273..455145 Clostridium botulinum A str. Hall 5400753 YP_001386351.1 CDS CLC_0456 NC_009698.1 455465 458083 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P complement(455465..458083) Clostridium botulinum A str. Hall 5401534 YP_001386352.1 CDS CLC_0457 NC_009698.1 458377 458913 R identified by match to protein family HMM PF02417; chromate transporter protein complement(458377..458913) Clostridium botulinum A str. Hall 5399422 YP_001386353.1 CDS CLC_0458 NC_009698.1 458913 459449 R identified by match to protein family HMM PF02417; chromate transport protein complement(458913..459449) Clostridium botulinum A str. Hall 5401118 YP_001386354.1 CDS CLC_0459 NC_009698.1 459623 460213 D identified by match to protein family HMM PF02452; PemK family protein 459623..460213 Clostridium botulinum A str. Hall 5399294 YP_001386355.1 CDS CLC_0460 NC_009698.1 460660 461085 D identified by match to protein family HMM PF03885; hypothetical protein 460660..461085 Clostridium botulinum A str. Hall 5399241 YP_001386356.1 CDS nadE NC_009698.1 461291 463207 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(461291..463207) Clostridium botulinum A str. Hall 5400613 YP_001386357.1 CDS CLC_0462 NC_009698.1 463429 463869 D identified by match to protein family HMM PF01957; hypothetical protein 463429..463869 Clostridium botulinum A str. Hall 5401599 YP_001386358.1 CDS CLC_0463 NC_009698.1 463872 464867 D identified by match to protein family HMM PF01145; hypothetical protein 463872..464867 Clostridium botulinum A str. Hall 5400007 YP_001386359.1 CDS CLC_0464 NC_009698.1 465230 466039 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 465230..466039 Clostridium botulinum A str. Hall 5399445 YP_001386360.1 CDS pepP NC_009698.1 466259 467494 D identified by match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase 466259..467494 Clostridium botulinum A str. Hall 5399271 YP_001386361.1 CDS CLC_0466 NC_009698.1 468135 468863 R identified by match to protein family HMM PF07685; CobB/CobQ family glutamine amidotransferase complement(468135..468863) Clostridium botulinum A str. Hall 5398255 YP_001386362.1 CDS CLC_0467 NC_009698.1 468921 470282 R identified by match to protein family HMM PF08245; match to protein family HMM PF08353; UDP-N-acetylmuramyl tripeptide synthetase-like protein complement(468921..470282) Clostridium botulinum A str. Hall 5398449 YP_001386363.1 CDS manA NC_009698.1 470547 471527 D identified by match to protein family HMM PF01238; mannose-6-phosphate isomerase 470547..471527 Clostridium botulinum A str. Hall 5399095 YP_001386364.1 CDS CLC_0469 NC_009698.1 471876 472991 D lipoprotein 471876..472991 Clostridium botulinum A str. Hall 5401517 YP_001386365.1 CDS CLC_0470 NC_009698.1 473099 473953 D phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 473099..473953 Clostridium botulinum A str. Hall 5400772 YP_001386366.1 CDS CLC_0481 NC_009698.1 479686 480549 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(479686..480549) Clostridium botulinum A str. Hall 5401428 YP_001386367.1 CDS CLC_0482 NC_009698.1 480686 481408 D identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 480686..481408 Clostridium botulinum A str. Hall 5400529 YP_001386368.1 CDS CLC_0483 NC_009698.1 482153 483514 D identified by match to protein family HMM PF00682; HMGL-related enzyme 482153..483514 Clostridium botulinum A str. Hall 5400888 YP_001386369.1 CDS CLC_0484 NC_009698.1 483658 485583 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 483658..485583 Clostridium botulinum A str. Hall 5399321 YP_001386370.1 CDS CLC_0485 NC_009698.1 485619 486617 D identified by match to protein family HMM PF00180; isocitrate/isopropylmalate family dehydrogenase 485619..486617 Clostridium botulinum A str. Hall 5400118 YP_001386371.1 CDS CLC_0486 NC_009698.1 486869 487651 D identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 486869..487651 Clostridium botulinum A str. Hall 5401691 YP_001386372.1 CDS CLC_0487 NC_009698.1 488170 489936 D identified by match to protein family HMM PF03553; match to protein family HMM PF03606; Na+/H+ antiporter family protein 488170..489936 Clostridium botulinum A str. Hall 5399723 YP_001386373.1 CDS CLC_0488 NC_009698.1 489963 490178 R identified by match to protein family HMM PF04070; hypothetical protein complement(489963..490178) Clostridium botulinum A str. Hall 5400863 YP_001386374.1 CDS panD NC_009698.1 490266 490649 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(490266..490649) Clostridium botulinum A str. Hall 5400952 YP_001386375.1 CDS panC NC_009698.1 490798 491643 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(490798..491643) Clostridium botulinum A str. Hall 5398381 YP_001386376.1 CDS panB NC_009698.1 491698 492525 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(491698..492525) Clostridium botulinum A str. Hall 5400996 YP_001386377.1 CDS addB NC_009698.1 493326 496769 D identified by match to protein family HMM TIGR02773; ATP-dependent nuclease subunit B 493326..496769 Clostridium botulinum A str. Hall 5398383 YP_001386378.1 CDS CLC_0493 NC_009698.1 497058 498272 R ABC transporter permease complement(497058..498272) Clostridium botulinum A str. Hall 5400342 YP_001386379.1 CDS CLC_0494 NC_009698.1 498262 498978 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(498262..498978) Clostridium botulinum A str. Hall 5400497 YP_001386380.1 CDS CLC_0495 NC_009698.1 499011 499961 R identified by similarity to GB:AAS44016.1; hypothetical protein complement(499011..499961) Clostridium botulinum A str. Hall 5398820 YP_001386381.1 CDS CLC_0496 NC_009698.1 499969 500289 R PadR family transcriptional regulator complement(499969..500289) Clostridium botulinum A str. Hall 5400974 YP_001386382.1 CDS CLC_0497 NC_009698.1 500630 502798 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 500630..502798 Clostridium botulinum A str. Hall 5398615 YP_001386383.1 CDS CLC_0498 NC_009698.1 502810 503106 D identified by Glimmer3; hypothetical protein 502810..503106 Clostridium botulinum A str. Hall 5401377 YP_001386384.1 CDS CLC_0499 NC_009698.1 503232 503414 D identified by Glimmer3; hypothetical protein 503232..503414 Clostridium botulinum A str. Hall 5399017 YP_001386385.1 CDS CLC_0500 NC_009698.1 503506 503685 D identified by Glimmer3; hypothetical protein 503506..503685 Clostridium botulinum A str. Hall 5400361 YP_001386386.1 CDS CLC_0501 NC_009698.1 503898 505640 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug export ATP-binding protein/permease 503898..505640 Clostridium botulinum A str. Hall 5401540 YP_001386387.1 CDS CLC_0502 NC_009698.1 505819 506205 R identified by Glimmer3; hypothetical protein complement(505819..506205) Clostridium botulinum A str. Hall 5400303 YP_001386388.1 CDS CLC_0503 NC_009698.1 506512 507162 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 506512..507162 Clostridium botulinum A str. Hall 5400215 YP_001386389.1 CDS CLC_0504 NC_009698.1 507165 507851 D hypothetical protein 507165..507851 Clostridium botulinum A str. Hall 5400429 YP_001386390.1 CDS CLC_0505 NC_009698.1 508100 508708 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(508100..508708) Clostridium botulinum A str. Hall 5400067 YP_001386391.1 CDS hypB NC_009698.1 508953 509624 D identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 508953..509624 Clostridium botulinum A str. Hall 5401551 YP_001386392.1 CDS CLC_0507 NC_009698.1 509860 512538 D identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 509860..512538 Clostridium botulinum A str. Hall 5399991 YP_001386393.1 CDS hypA NC_009698.1 512594 512935 D identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 512594..512935 Clostridium botulinum A str. Hall 5399199 YP_001386394.1 CDS CLC_0509 NC_009698.1 512974 513960 D hypothetical protein 512974..513960 Clostridium botulinum A str. Hall 5401422 YP_001386395.1 CDS CLC_0510 NC_009698.1 514134 514622 R identified by Glimmer3; hypothetical protein complement(514134..514622) Clostridium botulinum A str. Hall 5401767 YP_001386396.1 CDS addA NC_009698.1 514993 518832 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; recombination helicase AddA 514993..518832 Clostridium botulinum A str. Hall 5401174 YP_001386397.1 CDS CLC_0512 NC_009698.1 518972 520663 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 518972..520663 Clostridium botulinum A str. Hall 5400698 YP_001386398.1 CDS pepT NC_009698.1 520740 521966 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 520740..521966 Clostridium botulinum A str. Hall 5398246 YP_001386399.1 CDS CLC_0514 NC_009698.1 522241 523173 R identified by match to protein family HMM PF01734; phospholipase complement(522241..523173) Clostridium botulinum A str. Hall 5401246 YP_001386400.1 CDS CLC_0515 NC_009698.1 523745 524461 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 523745..524461 Clostridium botulinum A str. Hall 5398481 YP_001386401.1 CDS CLC_0516 NC_009698.1 524667 525140 D identified by match to protein family HMM PF00903; glyoxalase 524667..525140 Clostridium botulinum A str. Hall 5400055 YP_001386402.1 CDS CLC_0517 NC_009698.1 525100 525237 D identified by Glimmer3; hypothetical protein 525100..525237 Clostridium botulinum A str. Hall 5399234 YP_001386403.1 CDS CLC_0518 NC_009698.1 525541 526962 D identified by match to protein family HMM PF04122; N-acetylmuramoyl-L-alanine amidase 525541..526962 Clostridium botulinum A str. Hall 5398434 YP_001386404.1 CDS CLC_0519 NC_009698.1 527170 527805 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease complement(527170..527805) Clostridium botulinum A str. Hall 5400255 YP_001386405.1 CDS CLC_0520 NC_009698.1 527818 528621 R identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein complement(527818..528621) Clostridium botulinum A str. Hall 5400972 YP_001386406.1 CDS CLC_0521 NC_009698.1 528842 529570 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 528842..529570 Clostridium botulinum A str. Hall 5400223 YP_001386407.1 CDS CLC_0522 NC_009698.1 529919 531130 R identified by match to protein family HMM PF00563; match to protein family HMM PF08668; diguanylate phosphodiesterase complement(529919..531130) Clostridium botulinum A str. Hall 5398745 YP_001386408.1 CDS thiE NC_009698.1 531396 532013 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(531396..532013) Clostridium botulinum A str. Hall 5400418 YP_001386409.1 CDS thiM-1 NC_009698.1 532004 532795 R identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694; hydroxyethylthiazole kinase complement(532004..532795) Clostridium botulinum A str. Hall 5400612 YP_001386410.1 CDS thiD-1 NC_009698.1 533027 533827 R identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(533027..533827) Clostridium botulinum A str. Hall 5401675 YP_001386411.1 CDS ddl NC_009698.1 534839 535741 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 534839..535741 Clostridium botulinum A str. Hall 5401669 YP_001386412.1 CDS CLC_0527 NC_009698.1 535897 537039 D identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter amino acid-binding protein 535897..537039 Clostridium botulinum A str. Hall 5400458 YP_001386413.1 CDS CLC_0528 NC_009698.1 537043 537915 D identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 537043..537915 Clostridium botulinum A str. Hall 5400531 YP_001386414.1 CDS CLC_0529 NC_009698.1 537916 538860 D identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 537916..538860 Clostridium botulinum A str. Hall 5401055 YP_001386415.1 CDS CLC_0530 NC_009698.1 538872 539609 D identified by match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein 538872..539609 Clostridium botulinum A str. Hall 5398561 YP_001386416.1 CDS CLC_0531 NC_009698.1 539611 540312 D identified by match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein 539611..540312 Clostridium botulinum A str. Hall 5400989 YP_001386417.1 CDS CLC_0532 NC_009698.1 540341 541117 D identified by match to protein family HMM PF02596; hypothetical protein 540341..541117 Clostridium botulinum A str. Hall 5400889 YP_001386418.1 CDS CLC_0534 NC_009698.1 542275 542715 D hypothetical protein 542275..542715 Clostridium botulinum A str. Hall 5398805 YP_001386419.1 CDS CLC_0535 NC_009698.1 542857 544308 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 542857..544308 Clostridium botulinum A str. Hall 5399035 YP_001386420.1 CDS CLC_0536 NC_009698.1 544369 544938 D identified by match to protein family HMM PF04011; hypothetical protein 544369..544938 Clostridium botulinum A str. Hall 5399730 YP_001386421.1 CDS CLC_0537 NC_009698.1 544948 545784 D identified by match to protein family HMM PF04536; lipoprotein 544948..545784 Clostridium botulinum A str. Hall 5399011 YP_001386422.1 CDS CLC_0538 NC_009698.1 546303 547163 D identified by match to protein family HMM PF04536; hypothetical protein 546303..547163 Clostridium botulinum A str. Hall 5399584 YP_001386423.1 CDS CLC_0539 NC_009698.1 547437 548330 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 547437..548330 Clostridium botulinum A str. Hall 5399989 YP_001386424.1 CDS CLC_0540 NC_009698.1 548464 548946 D identified by Glimmer3; hypothetical protein 548464..548946 Clostridium botulinum A str. Hall 5399040 YP_001386425.1 CDS CLC_0541 NC_009698.1 549122 549646 D hypothetical protein 549122..549646 Clostridium botulinum A str. Hall 5398914 YP_001386426.1 CDS CLC_0542 NC_009698.1 549648 550238 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methlytransferase-like protein 549648..550238 Clostridium botulinum A str. Hall 5401033 YP_001386427.1 CDS CLC_0543 NC_009698.1 550324 550563 R hypothetical protein complement(550324..550563) Clostridium botulinum A str. Hall 5399144 YP_001386428.1 CDS CLC_0544 NC_009698.1 550584 551066 R hypothetical protein complement(550584..551066) Clostridium botulinum A str. Hall 5400739 YP_001386430.1 CDS CLC_0546 NC_009698.1 551812 553041 D identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 551812..553041 Clostridium botulinum A str. Hall 5398232 YP_001386431.1 CDS sbcC NC_009698.1 553016 556546 D exonuclease SbcC 553016..556546 Clostridium botulinum A str. Hall 5399829 YP_001386432.1 CDS CLC_0548 NC_009698.1 556574 557122 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 556574..557122 Clostridium botulinum A str. Hall 5400487 YP_001386433.1 CDS CLC_0549 NC_009698.1 557933 558784 D identified by match to protein family HMM PF02588; hypothetical protein 557933..558784 Clostridium botulinum A str. Hall 5398762 YP_001386435.1 CDS cadA NC_009698.1 559689 561917 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 559689..561917 Clostridium botulinum A str. Hall 5401610 YP_001386436.1 CDS CLC_0553 NC_009698.1 562565 562774 D identified by Glimmer3; hypothetical protein 562565..562774 Clostridium botulinum A str. Hall 5398851 YP_001386437.1 CDS CLC_0554 NC_009698.1 563655 564002 D hypothetical protein 563655..564002 Clostridium botulinum A str. Hall 5398899 YP_001386438.1 CDS CLC_0555 NC_009698.1 564021 564170 R hypothetical protein complement(564021..564170) Clostridium botulinum A str. Hall 5401010 YP_001386439.1 CDS CLC_0556 NC_009698.1 564688 565497 D hypothetical protein 564688..565497 Clostridium botulinum A str. Hall 5401360 YP_001386440.1 CDS CLC_0557 NC_009698.1 566454 567830 D identified by match to protein family HMM PF02562; PhoH family protein 566454..567830 Clostridium botulinum A str. Hall 5398337 YP_001386441.1 CDS CLC_0558 NC_009698.1 568098 569102 D hypothetical protein 568098..569102 Clostridium botulinum A str. Hall 5399600 YP_001386442.1 CDS CLC_0559 NC_009698.1 569112 570128 D hypothetical protein 569112..570128 Clostridium botulinum A str. Hall 5401115 YP_001386443.1 CDS CLC_0560 NC_009698.1 570448 570621 D identified by Glimmer3; hypothetical protein 570448..570621 Clostridium botulinum A str. Hall 5401617 YP_001386444.1 CDS sagB NC_009698.1 570786 571742 D streptolysin associated protein SagB 570786..571742 Clostridium botulinum A str. Hall 5401157 YP_001386445.1 CDS sagC NC_009698.1 571746 572828 D streptolysin associated protein SagC 571746..572828 Clostridium botulinum A str. Hall 5399277 YP_001386446.1 CDS sagD NC_009698.1 572844 574202 D identified by match to protein family HMM PF02624; streptolysin associated protein SagD 572844..574202 Clostridium botulinum A str. Hall 5401358 YP_001386447.1 CDS CLC_0564 NC_009698.1 574177 574815 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 574177..574815 Clostridium botulinum A str. Hall 5401577 YP_001386448.1 CDS CLC_0565 NC_009698.1 574823 575551 D hypothetical protein 574823..575551 Clostridium botulinum A str. Hall 5399621 YP_001386449.1 CDS sagG NC_009698.1 575860 576792 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein SagG 575860..576792 Clostridium botulinum A str. Hall 5399084 YP_001386450.1 CDS sagH NC_009698.1 576804 577928 D identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein/permease SagH 576804..577928 Clostridium botulinum A str. Hall 5399624 YP_001386451.1 CDS sagI NC_009698.1 577930 579072 D identified by match to protein family HMM PF01061; drug ABC transporter ATP-binding protein/permease 577930..579072 Clostridium botulinum A str. Hall 5399437 YP_001386452.1 CDS CLC_0569 NC_009698.1 579200 579850 D identified by match to protein family HMM PF02163; metalloprotease 579200..579850 Clostridium botulinum A str. Hall 5401263 YP_001386453.1 CDS CLC_0570 NC_009698.1 580318 580788 R identified by Glimmer3; hypothetical protein complement(580318..580788) Clostridium botulinum A str. Hall 5401576 YP_001386454.1 CDS CLC_0571 NC_009698.1 580906 582168 R identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; arsenical pump family protein complement(580906..582168) Clostridium botulinum A str. Hall 5398573 YP_001386455.1 CDS CLC_0572 NC_009698.1 582295 583707 R hypothetical protein complement(582295..583707) Clostridium botulinum A str. Hall 5400704 YP_001386456.1 CDS trmB NC_009698.1 583983 584636 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 583983..584636 Clostridium botulinum A str. Hall 5399680 YP_001386457.1 CDS CLC_0574 NC_009698.1 584849 585112 D hypothetical protein 584849..585112 Clostridium botulinum A str. Hall 5398327 YP_001386458.1 CDS tpx NC_009698.1 585207 585701 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(585207..585701) Clostridium botulinum A str. Hall 5401793 YP_001386459.1 CDS fabG NC_009698.1 586072 586815 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 586072..586815 Clostridium botulinum A str. Hall 5400137 YP_001386460.1 CDS CLC_0577 NC_009698.1 586878 587831 D identified by match to protein family HMM PF00072; response regulator 586878..587831 Clostridium botulinum A str. Hall 5399860 YP_001386461.1 CDS CLC_0578 NC_009698.1 587955 590111 R identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239; NlpC/P60 family protein complement(587955..590111) Clostridium botulinum A str. Hall 5400232 YP_001386462.1 CDS CLC_0579 NC_009698.1 590419 591363 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 590419..591363 Clostridium botulinum A str. Hall 5399907 YP_001386463.1 CDS CLC_0580 NC_009698.1 591626 592873 D identified by match to protein family HMM PF00072; response regulator 591626..592873 Clostridium botulinum A str. Hall 5400530 YP_001386464.1 CDS CLC_0581 NC_009698.1 593170 593754 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 593170..593754 Clostridium botulinum A str. Hall 5401836 YP_001386465.1 CDS CLC_0582 NC_009698.1 593790 595814 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 593790..595814 Clostridium botulinum A str. Hall 5400330 YP_001386466.1 CDS CLC_0583 NC_009698.1 596019 596813 D identified by match to protein family HMM PF00072; response regulator 596019..596813 Clostridium botulinum A str. Hall 5400884 YP_001386467.1 CDS serS-2 NC_009698.1 597295 598572 D identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase 597295..598572 Clostridium botulinum A str. Hall 5400102 YP_001386468.1 CDS CLC_0585 NC_009698.1 599150 601504 D identified by match to protein family HMM PF06733; ATP-dependent helicase 599150..601504 Clostridium botulinum A str. Hall 5400122 YP_001386469.1 CDS CLC_0586 NC_009698.1 601795 601986 R hypothetical protein complement(601795..601986) Clostridium botulinum A str. Hall 5399431 YP_001386470.1 CDS CLC_0587 NC_009698.1 602316 602936 R identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279; GntR family transcriptional regulator complement(602316..602936) Clostridium botulinum A str. Hall 5400256 YP_001386471.1 CDS ceo NC_009698.1 603191 604144 D identified by match to protein family HMM PF01262; N(5)-(carboxyethyl)ornithine synthase 603191..604144 Clostridium botulinum A str. Hall 5398896 YP_001386472.1 CDS CLC_0589 NC_009698.1 604348 606354 R identified by match to protein family HMM PF06874; fructose-1,6-bisphosphatase complement(604348..606354) Clostridium botulinum A str. Hall 5399140 YP_001386473.1 CDS CLC_0590 NC_009698.1 606638 607000 D identified by Glimmer3; hypothetical protein 606638..607000 Clostridium botulinum A str. Hall 5400064 YP_001386474.1 CDS CLC_0591 NC_009698.1 607175 607588 D identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin-like metal-binding domain-containing protein 607175..607588 Clostridium botulinum A str. Hall 5401514 YP_001386475.1 CDS CLC_0592 NC_009698.1 607802 608497 R identified by Glimmer3; hypothetical protein complement(607802..608497) Clostridium botulinum A str. Hall 5400056 YP_001386476.1 CDS CLC_0593 NC_009698.1 609236 609658 D identified by Glimmer3; hypothetical protein 609236..609658 Clostridium botulinum A str. Hall 5398582 YP_001386477.1 CDS CLC_0594 NC_009698.1 609934 610584 R identified by match to protein family HMM PF02777; Fe/Mn family superoxide dismutase complement(609934..610584) Clostridium botulinum A str. Hall 5399682 YP_001386478.1 CDS CLC_0595 NC_009698.1 610777 611616 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 610777..611616 Clostridium botulinum A str. Hall 5401563 YP_001386479.1 CDS CLC_0596 NC_009698.1 611714 612013 R hypothetical protein complement(611714..612013) Clostridium botulinum A str. Hall 5400270 YP_001386480.1 CDS CLC_0597 NC_009698.1 612161 614014 R hypothetical protein complement(612161..614014) Clostridium botulinum A str. Hall 5398654 YP_001386482.1 CDS CLC_0599 NC_009698.1 614740 615189 R hypothetical protein complement(614740..615189) Clostridium botulinum A str. Hall 5400718 YP_001386483.1 CDS CLC_0600 NC_009698.1 615607 615798 R identified by match to protein family HMM PF01381; DNA-binding protein complement(615607..615798) Clostridium botulinum A str. Hall 5401364 YP_001386484.1 CDS CLC_0601 NC_009698.1 615776 616237 R identified by match to protein family HMM PF00583; acetyltransferase complement(615776..616237) Clostridium botulinum A str. Hall 5400758 YP_001386485.1 CDS CLC_0602 NC_009698.1 616621 616833 D identified by match to protein family HMM PF04324; (2Fe-2S)-binding protein 616621..616833 Clostridium botulinum A str. Hall 5401807 YP_001386486.1 CDS CLC_0603 NC_009698.1 617305 617442 D identified by Glimmer3; hypothetical protein 617305..617442 Clostridium botulinum A str. Hall 5401727 YP_001386488.1 CDS CLC_0606 NC_009698.1 618975 619484 D identified by Glimmer3; hypothetical protein 618975..619484 Clostridium botulinum A str. Hall 5398940 YP_001386489.1 CDS CLC_0607 NC_009698.1 619494 621137 D identified by match to protein family HMM PF02554; carbon starvation protein CstA 619494..621137 Clostridium botulinum A str. Hall 5398697 YP_001386490.1 CDS CLC_0608 NC_009698.1 621598 622287 D hypothetical protein 621598..622287 Clostridium botulinum A str. Hall 5398295 YP_001386491.1 CDS CLC_0609 NC_009698.1 623207 625198 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 623207..625198 Clostridium botulinum A str. Hall 5400835 YP_001386492.1 CDS mscL NC_009698.1 627675 628076 D identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 627675..628076 Clostridium botulinum A str. Hall 5399522 YP_001386493.1 CDS CLC_0612 NC_009698.1 628442 629125 D identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 628442..629125 Clostridium botulinum A str. Hall 5400034 YP_001386494.1 CDS CLC_0613 NC_009698.1 629258 629395 R identified by Glimmer3; hypothetical protein complement(629258..629395) Clostridium botulinum A str. Hall 5398760 YP_001386495.1 CDS CLC_0614 NC_009698.1 629649 630785 D identified by match to protein family HMM PF02810; SecC motif-containing protein 629649..630785 Clostridium botulinum A str. Hall 5400653 YP_001386496.1 CDS CLC_0615 NC_009698.1 631273 631653 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 631273..631653 Clostridium botulinum A str. Hall 5401720 YP_001386497.1 CDS CLC_0616 NC_009698.1 631646 632341 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 631646..632341 Clostridium botulinum A str. Hall 5399518 YP_001386498.1 CDS CLC_0617 NC_009698.1 632341 633102 D ABC transporter permease 632341..633102 Clostridium botulinum A str. Hall 5399546 YP_001386499.1 CDS potA NC_009698.1 633919 635001 D identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding protein 633919..635001 Clostridium botulinum A str. Hall 5398340 YP_001386500.1 CDS potB NC_009698.1 635001 635960 D identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 635001..635960 Clostridium botulinum A str. Hall 5399180 YP_001386501.1 CDS CLC_0620 NC_009698.1 635963 637804 D identified by match to protein family HMM PF00528; match to protein family HMM PF01547; spermidine/putrescine ABC transporter permease/spermidine/putrescine-binding protein 635963..637804 Clostridium botulinum A str. Hall 5400267 YP_001386502.1 CDS CLC_0621 NC_009698.1 638161 639030 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(638161..639030) Clostridium botulinum A str. Hall 5399513 YP_001386503.1 CDS CLC_0622 NC_009698.1 639292 640593 D identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein 639292..640593 Clostridium botulinum A str. Hall 5400096 YP_001386504.1 CDS CLC_0623 NC_009698.1 641195 641335 D identified by Glimmer3; hypothetical protein 641195..641335 Clostridium botulinum A str. Hall 5398834 YP_001386505.1 CDS CLC_0624 NC_009698.1 641739 642383 D identified by match to protein family HMM PF01966; HD domain-containing protein 641739..642383 Clostridium botulinum A str. Hall 5400630 YP_001386507.1 CDS CLC_0626 NC_009698.1 642848 643078 D identified by Glimmer3; hypothetical protein 642848..643078 Clostridium botulinum A str. Hall 5400601 YP_001386508.1 CDS CLC_0627 NC_009698.1 643082 644086 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 643082..644086 Clostridium botulinum A str. Hall 5399478 YP_001386509.1 CDS CLC_0628 NC_009698.1 644400 645248 R identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein complement(644400..645248) Clostridium botulinum A str. Hall 5400810 YP_003204969.1 CDS CLC_0629 NC_009698.1 645687 646037 D tRNA-binding domain protein 645687..646037 Clostridium botulinum A str. Hall 5399030 YP_001386510.1 CDS lepB-1 NC_009698.1 646211 646819 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 646211..646819 Clostridium botulinum A str. Hall 5401751 YP_001386512.1 CDS CLC_0632 NC_009698.1 647648 648349 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 647648..648349 Clostridium botulinum A str. Hall 5401780 YP_001386513.1 CDS CLC_0633 NC_009698.1 648963 649082 D identified by Glimmer3; hypothetical protein 648963..649082 Clostridium botulinum A str. Hall 5398789 YP_001386514.1 CDS CLC_0634 NC_009698.1 649122 649247 D identified by Glimmer3; hypothetical protein 649122..649247 Clostridium botulinum A str. Hall 5401441 YP_001386515.1 CDS CLC_0635 NC_009698.1 649941 650087 D identified by Glimmer3; hypothetical protein 649941..650087 Clostridium botulinum A str. Hall 5399363 YP_001386516.1 CDS CLC_0636 NC_009698.1 650694 652046 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 650694..652046 Clostridium botulinum A str. Hall 5401424 YP_001386517.1 CDS CLC_0637 NC_009698.1 652039 652629 D identified by Glimmer3; hypothetical protein 652039..652629 Clostridium botulinum A str. Hall 5398626 YP_001386518.1 CDS CLC_0638 NC_009698.1 652666 653163 D hypothetical protein 652666..653163 Clostridium botulinum A str. Hall 5400158 YP_001386519.1 CDS CLC_0639 NC_009698.1 653198 654910 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; ABC transporter ATP-binding protein/permease 653198..654910 Clostridium botulinum A str. Hall 5400812 YP_001386520.1 CDS CLC_0640 NC_009698.1 655020 655769 D lipoprotein 655020..655769 Clostridium botulinum A str. Hall 5399389 YP_001386521.1 CDS CLC_0641 NC_009698.1 655792 656271 D identified by match to protein family HMM PF00583; acetyltransferase 655792..656271 Clostridium botulinum A str. Hall 5399891 YP_001386522.1 CDS CLC_0642 NC_009698.1 656268 658736 D identified by match to protein family HMM PF02687; ABC transporter permease 656268..658736 Clostridium botulinum A str. Hall 5398817 YP_001386523.1 CDS CLC_0643 NC_009698.1 658751 659431 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 658751..659431 Clostridium botulinum A str. Hall 5399288 YP_001386524.1 CDS CLC_0644 NC_009698.1 660000 660263 D hypothetical protein 660000..660263 Clostridium botulinum A str. Hall 5399882 YP_001386525.1 CDS CLC_0645 NC_009698.1 660592 661458 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 660592..661458 Clostridium botulinum A str. Hall 5399074 YP_001386526.1 CDS CLC_0646 NC_009698.1 661855 662367 D hypothetical protein 661855..662367 Clostridium botulinum A str. Hall 5398275 YP_001386528.1 CDS CLC_0648 NC_009698.1 662863 664773 D identified by match to protein family HMM PF00884; sulfatase 662863..664773 Clostridium botulinum A str. Hall 5401166 YP_001386529.1 CDS CLC_0649 NC_009698.1 664909 666321 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator complement(664909..666321) Clostridium botulinum A str. Hall 5401376 YP_001386530.1 CDS CLC_0650 NC_009698.1 666656 667879 R identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter complement(666656..667879) Clostridium botulinum A str. Hall 5399842 YP_001386531.1 CDS asnC NC_009698.1 669052 670443 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 669052..670443 Clostridium botulinum A str. Hall 5399371 YP_001386532.1 CDS CLC_0652 NC_009698.1 670737 671057 D identified by similarity to GB:BAD62756.1; match to protein family HMM PF03551; PadR family transcriptional regulator 670737..671057 Clostridium botulinum A str. Hall 5398700 YP_001386533.1 CDS CLC_0653 NC_009698.1 671073 671609 D hypothetical protein 671073..671609 Clostridium botulinum A str. Hall 5399540 YP_001386534.1 CDS CLC_0654 NC_009698.1 671812 672267 D identified by match to protein family HMM PF04397; LytR family transcriptional regulator 671812..672267 Clostridium botulinum A str. Hall 5398575 YP_001386535.1 CDS CLC_0655 NC_009698.1 672269 672967 D hypothetical protein 672269..672967 Clostridium botulinum A str. Hall 5399690 YP_001386536.1 CDS CLC_0656 NC_009698.1 673569 674456 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 673569..674456 Clostridium botulinum A str. Hall 5398374 YP_001386537.1 CDS CLC_0657 NC_009698.1 674885 675796 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 674885..675796 Clostridium botulinum A str. Hall 5399888 YP_001386538.1 CDS CLC_0658 NC_009698.1 675809 676201 D identified by match to protein family HMM PF01381; DNA-binding protein 675809..676201 Clostridium botulinum A str. Hall 5398993 YP_001386539.1 CDS CLC_0659 NC_009698.1 676664 677803 D lipoprotein 676664..677803 Clostridium botulinum A str. Hall 5400763 YP_001386540.1 CDS CLC_0660 NC_009698.1 678000 679106 D lipoprotein 678000..679106 Clostridium botulinum A str. Hall 5401408 YP_001386541.1 CDS CLC_0661 NC_009698.1 679281 679964 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 679281..679964 Clostridium botulinum A str. Hall 5400179 YP_001386544.1 CDS CLC_0664 NC_009698.1 681595 682311 D identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 681595..682311 Clostridium botulinum A str. Hall 5398629 YP_001386545.1 CDS CLC_0665 NC_009698.1 682332 683024 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 682332..683024 Clostridium botulinum A str. Hall 5401341 YP_001386546.1 CDS CLC_0666 NC_009698.1 683014 684135 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 683014..684135 Clostridium botulinum A str. Hall 5400093 YP_001386547.1 CDS CLC_0667 NC_009698.1 684295 685434 R hypothetical protein complement(684295..685434) Clostridium botulinum A str. Hall 5401800 YP_001386548.1 CDS CLC_0668 NC_009698.1 685577 686389 R identified by match to protein family HMM PF00072; response regulator complement(685577..686389) Clostridium botulinum A str. Hall 5400847 YP_001386549.1 CDS CLC_0669 NC_009698.1 686386 687684 R identified by match to protein family HMM PF02518; sensor histidine kinase complement(686386..687684) Clostridium botulinum A str. Hall 5399229 YP_001386550.1 CDS rodA-1 NC_009698.1 688079 689239 D identified by match to protein family HMM PF01098; rod shape-determining protein RodA 688079..689239 Clostridium botulinum A str. Hall 5399494 YP_001386551.1 CDS cfa NC_009698.1 689548 690726 R identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; cyclopropane-fatty-acyl-phospholipid synthase complement(689548..690726) Clostridium botulinum A str. Hall 5399160 YP_001386552.1 CDS CLC_0672 NC_009698.1 691054 692085 D identified by Glimmer3; hypothetical protein 691054..692085 Clostridium botulinum A str. Hall 5399369 YP_001386553.1 CDS CLC_0673 NC_009698.1 692255 693934 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 692255..693934 Clostridium botulinum A str. Hall 5400409 YP_001386554.1 CDS cat-1 NC_009698.1 694357 694983 R identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase complement(694357..694983) Clostridium botulinum A str. Hall 5399058 YP_001386555.1 CDS CLC_0675 NC_009698.1 695148 695765 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 695148..695765 Clostridium botulinum A str. Hall 5401470 YP_001386556.1 CDS CLC_0676 NC_009698.1 695868 696338 D identified by match to protein family HMM PF00583; acetyltransferase 695868..696338 Clostridium botulinum A str. Hall 5399796 YP_001386557.1 CDS csaA NC_009698.1 696405 696734 R identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222; csaA protein complement(696405..696734) Clostridium botulinum A str. Hall 5399639 YP_001386558.1 CDS CLC_0678 NC_009698.1 696942 697667 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(696942..697667) Clostridium botulinum A str. Hall 5401666 YP_001386559.1 CDS CLC_0679 NC_009698.1 697964 698515 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; helix-turn-helix domain-containing protein complement(697964..698515) Clostridium botulinum A str. Hall 5398291 YP_001386560.1 CDS CLC_0680 NC_009698.1 698772 699362 D identified by match to protein family HMM TIGR00277; HDIG domain-containing protein 698772..699362 Clostridium botulinum A str. Hall 5401247 YP_001386561.1 CDS CLC_0681 NC_009698.1 699490 700506 D identified by match to protein family HMM PF04397; LytR family transcriptional regulator 699490..700506 Clostridium botulinum A str. Hall 5400252 YP_001386562.1 CDS CLC_0682 NC_009698.1 700889 701605 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 700889..701605 Clostridium botulinum A str. Hall 5401303 YP_001386563.1 CDS CLC_0683 NC_009698.1 701611 701745 D identified by Glimmer3; hypothetical protein 701611..701745 Clostridium botulinum A str. Hall 5398628 YP_001386564.1 CDS CLC_0684 NC_009698.1 701823 703046 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(701823..703046) Clostridium botulinum A str. Hall 5398280 YP_001386565.1 CDS CLC_0685 NC_009698.1 703879 705774 D identified by match to protein family HMM PF00488; MutS domain-containing protein 703879..705774 Clostridium botulinum A str. Hall 5401423 YP_001386566.1 CDS CLC_0686 NC_009698.1 705882 706313 D identified by Glimmer3; hypothetical protein 705882..706313 Clostridium botulinum A str. Hall 5399436 YP_003204970.1 CDS CLC_0687 NC_009698.1 706371 706721 D hypothetical protein 706371..706721 Clostridium botulinum A str. Hall 5399303 YP_001386567.1 CDS CLC_0688 NC_009698.1 706808 707281 R identified by match to protein family HMM PF01243; nimA protein complement(706808..707281) Clostridium botulinum A str. Hall 5399394 YP_001386568.1 CDS CLC_0689 NC_009698.1 707304 707717 R identified by match to protein family HMM PF04304; hypothetical protein complement(707304..707717) Clostridium botulinum A str. Hall 5400091 YP_001386569.1 CDS CLC_0690 NC_009698.1 708342 708821 D identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 708342..708821 Clostridium botulinum A str. Hall 5399350 YP_001386570.1 CDS CLC_0691 NC_009698.1 709045 709356 R hypothetical protein complement(709045..709356) Clostridium botulinum A str. Hall 5400759 YP_001386571.1 CDS CLC_0692 NC_009698.1 709495 710904 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(709495..710904) Clostridium botulinum A str. Hall 5400789 YP_001386572.1 CDS CLC_0693 NC_009698.1 711097 711405 D hypothetical protein 711097..711405 Clostridium botulinum A str. Hall 5399703 YP_001386573.1 CDS CLC_0694 NC_009698.1 711523 711720 D hypothetical protein 711523..711720 Clostridium botulinum A str. Hall 5399589 YP_001386574.1 CDS rhlE NC_009698.1 711979 713256 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE 711979..713256 Clostridium botulinum A str. Hall 5401785 YP_001386575.1 CDS CLC_0696 NC_009698.1 713832 714320 D identified by match to protein family HMM PF02915; rubrerythrin 713832..714320 Clostridium botulinum A str. Hall 5401620 YP_001386576.1 CDS CLC_0697 NC_009698.1 714492 714929 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 714492..714929 Clostridium botulinum A str. Hall 5401660 YP_001386577.1 CDS CLC_0698 NC_009698.1 714957 716390 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 714957..716390 Clostridium botulinum A str. Hall 5400773 YP_001386578.1 CDS CLC_0699 NC_009698.1 716512 717702 R hypothetical protein complement(716512..717702) Clostridium botulinum A str. Hall 5399045 YP_001386579.1 CDS CLC_0700 NC_009698.1 717827 718702 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 717827..718702 Clostridium botulinum A str. Hall 5400914 YP_001386580.1 CDS CLC_0701 NC_009698.1 718829 720523 D identified by match to protein family HMM PF08011; hypothetical protein 718829..720523 Clostridium botulinum A str. Hall 5399225 YP_001386581.1 CDS CLC_0702 NC_009698.1 720707 720928 D identified by Glimmer3; hypothetical protein 720707..720928 Clostridium botulinum A str. Hall 5399188 YP_001386582.1 CDS CLC_0703 NC_009698.1 720918 721235 D identified by similarity to GB:CAJ62824.1; hypothetical protein 720918..721235 Clostridium botulinum A str. Hall 5401160 YP_001386583.1 CDS CLC_0704 NC_009698.1 721302 721970 D identified by match to protein family HMM PF02698; sanA protein 721302..721970 Clostridium botulinum A str. Hall 5400117 YP_001386584.1 CDS CLC_0705 NC_009698.1 722101 725067 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; restriction/helicase domain-containing protein 722101..725067 Clostridium botulinum A str. Hall 5399085 YP_001386585.1 CDS CLC_0706 NC_009698.1 725107 725505 R identified by match to protein family HMM PF00293; mutator mutT protein complement(725107..725505) Clostridium botulinum A str. Hall 5398371 YP_001386586.1 CDS CLC_0707 NC_009698.1 725969 726808 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator 725969..726808 Clostridium botulinum A str. Hall 5398320 YP_001386587.1 CDS CLC_0708 NC_009698.1 727013 728854 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 727013..728854 Clostridium botulinum A str. Hall 5399642 YP_001386588.1 CDS CLC_0709 NC_009698.1 728866 729684 D identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 728866..729684 Clostridium botulinum A str. Hall 5398681 YP_001386589.1 CDS CLC_0710 NC_009698.1 730311 731021 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 730311..731021 Clostridium botulinum A str. Hall 5400020 YP_001386590.1 CDS CLC_0711 NC_009698.1 731180 732412 D identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase 731180..732412 Clostridium botulinum A str. Hall 5400264 YP_001386591.1 CDS CLC_0712 NC_009698.1 732472 733170 D identified by match to protein family HMM PF01814; match to protein family HMM PF04405; scdA protein 732472..733170 Clostridium botulinum A str. Hall 5401288 YP_001386592.1 CDS CLC_0713 NC_009698.1 733196 733951 D identified by match to protein family HMM PF01814; match to protein family HMM PF04282; hypothetical protein 733196..733951 Clostridium botulinum A str. Hall 5398440 YP_001386593.1 CDS CLC_0714 NC_009698.1 734024 734443 R identified by Glimmer3; hypothetical protein complement(734024..734443) Clostridium botulinum A str. Hall 5399564 YP_001386594.1 CDS gltS NC_009698.1 735110 736294 D identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 735110..736294 Clostridium botulinum A str. Hall 5401496 YP_001386595.1 CDS CLC_0716 NC_009698.1 736381 736497 R hypothetical protein complement(736381..736497) Clostridium botulinum A str. Hall 5398580 YP_001386596.1 CDS CLC_0717 NC_009698.1 736903 737370 D hypothetical protein 736903..737370 Clostridium botulinum A str. Hall 5399033 YP_001386597.1 CDS CLC_0718 NC_009698.1 737377 738720 D hypothetical protein 737377..738720 Clostridium botulinum A str. Hall 5400004 YP_001386598.1 CDS CLC_0719 NC_009698.1 738873 739019 R identified by Glimmer3; hypothetical protein complement(738873..739019) Clostridium botulinum A str. Hall 5399915 YP_001386599.1 CDS CLC_0720 NC_009698.1 738970 739173 R identified by Glimmer3; hypothetical protein complement(738970..739173) Clostridium botulinum A str. Hall 5400332 YP_001386600.1 CDS CLC_0721 NC_009698.1 739627 740613 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 739627..740613 Clostridium botulinum A str. Hall 5401426 YP_001386601.1 CDS CLC_0722 NC_009698.1 740955 741848 D identified by match to protein family HMM PF02653; ABC transporter permease 740955..741848 Clostridium botulinum A str. Hall 5401745 YP_001386602.1 CDS CLC_0723 NC_009698.1 741811 742566 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 741811..742566 Clostridium botulinum A str. Hall 5399686 YP_001386603.1 CDS CLC_0724 NC_009698.1 742597 743556 D identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 742597..743556 Clostridium botulinum A str. Hall 5401597 YP_001386604.1 CDS CLC_0725 NC_009698.1 743570 743950 D identified by Glimmer3; hypothetical protein 743570..743950 Clostridium botulinum A str. Hall 5400617 YP_001386605.1 CDS CLC_0726 NC_009698.1 744670 745353 D hypothetical protein 744670..745353 Clostridium botulinum A str. Hall 5398332 YP_001386606.1 CDS CLC_0727 NC_009698.1 745644 747065 R identified by Glimmer3; hypothetical protein complement(745644..747065) Clostridium botulinum A str. Hall 5398329 YP_001386607.1 CDS CLC_0728 NC_009698.1 747062 747625 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(747062..747625) Clostridium botulinum A str. Hall 5399447 YP_001386608.1 CDS CLC_0729 NC_009698.1 747854 748813 D identified by match to protein family HMM PF01207; dihydrouridine synthase 747854..748813 Clostridium botulinum A str. Hall 5400568 YP_001386609.1 CDS greA-1 NC_009698.1 748949 749413 D identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 748949..749413 Clostridium botulinum A str. Hall 5400795 YP_001386610.1 CDS CLC_0731 NC_009698.1 749574 750326 D hypothetical protein 749574..750326 Clostridium botulinum A str. Hall 5398919 YP_001386611.1 CDS CLC_0732 NC_009698.1 750601 752058 D identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit 750601..752058 Clostridium botulinum A str. Hall 5401103 YP_001386612.1 CDS CLC_0733 NC_009698.1 752153 753313 D identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 752153..753313 Clostridium botulinum A str. Hall 5399799 YP_001386613.1 CDS CLC_0734 NC_009698.1 753401 753586 D identified by Glimmer3; hypothetical protein 753401..753586 Clostridium botulinum A str. Hall 5400208 YP_001386614.1 CDS CLC_0735 NC_009698.1 753805 754011 D identified by similarity to GB:ABC20367.1; hypothetical protein 753805..754011 Clostridium botulinum A str. Hall 5400014 YP_001386615.1 CDS CLC_0736 NC_009698.1 754155 757502 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit 754155..757502 Clostridium botulinum A str. Hall 5400771 YP_001386616.1 CDS CLC_0737 NC_009698.1 757560 760214 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 757560..760214 Clostridium botulinum A str. Hall 5399392 YP_001386617.1 CDS CLC_0738 NC_009698.1 760379 760495 R identified by Glimmer3; hypothetical protein complement(760379..760495) Clostridium botulinum A str. Hall 5399013 YP_001386618.1 CDS CLC_0739 NC_009698.1 760782 761603 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 760782..761603 Clostridium botulinum A str. Hall 5398602 YP_001386619.1 CDS CLC_0740 NC_009698.1 762073 763062 D identified by match to protein family HMM PF01497; ferrichrome ABC transporter ferrichrome-binding protein 762073..763062 Clostridium botulinum A str. Hall 5399207 YP_001386620.1 CDS fhuB NC_009698.1 763158 764198 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuB 763158..764198 Clostridium botulinum A str. Hall 5398782 YP_001386621.1 CDS fhuG NC_009698.1 764198 765238 D identified by match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuG 764198..765238 Clostridium botulinum A str. Hall 5399243 YP_001386622.1 CDS fhuC NC_009698.1 765466 766251 D identified by match to protein family HMM PF00005; ferrichrome ABC transporter ATP-binding protein 765466..766251 Clostridium botulinum A str. Hall 5399041 YP_001386623.1 CDS nifH NC_009698.1 766281 767030 D identified by match to protein family HMM PF00142; nitrogenase iron protein 766281..767030 Clostridium botulinum A str. Hall 5400149 YP_001386624.1 CDS CLC_0745 NC_009698.1 767033 768301 D identified by Glimmer3; hypothetical protein 767033..768301 Clostridium botulinum A str. Hall 5399928 YP_001386625.1 CDS CLC_0746 NC_009698.1 768341 769579 D identified by Glimmer3; hypothetical protein 768341..769579 Clostridium botulinum A str. Hall 5400473 YP_001386626.1 CDS CLC_0747 NC_009698.1 769902 771914 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 769902..771914 Clostridium botulinum A str. Hall 5400442 YP_001386627.1 CDS CLC_0748 NC_009698.1 772011 772130 D identified by Glimmer3; hypothetical protein 772011..772130 Clostridium botulinum A str. Hall 5401635 YP_001386628.1 CDS CLC_0749 NC_009698.1 772210 773619 R hypothetical protein complement(772210..773619) Clostridium botulinum A str. Hall 5399386 YP_001386629.1 CDS gcvT NC_009698.1 774198 775310 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 774198..775310 Clostridium botulinum A str. Hall 5398597 YP_001386630.1 CDS gcvH NC_009698.1 775435 775827 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 775435..775827 Clostridium botulinum A str. Hall 5400747 YP_001386631.1 CDS gcvPA NC_009698.1 775830 777170 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 775830..777170 Clostridium botulinum A str. Hall 5399606 YP_001386632.1 CDS gcvPB NC_009698.1 777170 778624 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 777170..778624 Clostridium botulinum A str. Hall 5401122 YP_001386633.1 CDS CLC_0754 NC_009698.1 778818 780206 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; glycine cleavage system, dihydrolipoamide dehydrogenase 778818..780206 Clostridium botulinum A str. Hall 5401605 YP_001386634.1 CDS CLC_0755 NC_009698.1 780224 781201 D identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 780224..781201 Clostridium botulinum A str. Hall 5399758 YP_001386635.1 CDS CLC_0756 NC_009698.1 781611 783704 D identified by Glimmer3; hypothetical protein 781611..783704 Clostridium botulinum A str. Hall 5398841 YP_001386636.1 CDS CLC_0757 NC_009698.1 784066 784902 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 784066..784902 Clostridium botulinum A str. Hall 5398458 YP_001386637.1 CDS CLC_0758 NC_009698.1 784996 785544 D identified by Glimmer3; hypothetical protein 784996..785544 Clostridium botulinum A str. Hall 5400384 YP_001386638.1 CDS CLC_0759 NC_009698.1 785746 785910 D hypothetical protein 785746..785910 Clostridium botulinum A str. Hall 5400494 YP_001386639.1 CDS CLC_0760 NC_009698.1 786620 787384 D hypothetical protein 786620..787384 Clostridium botulinum A str. Hall 5401818 YP_001386640.1 CDS CLC_0761 NC_009698.1 787438 787896 D hypothetical protein 787438..787896 Clostridium botulinum A str. Hall 5399099 YP_001386641.1 CDS CLC_0762 NC_009698.1 788222 788986 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 788222..788986 Clostridium botulinum A str. Hall 5399678 YP_001386642.1 CDS CLC_0763 NC_009698.1 789038 789769 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 789038..789769 Clostridium botulinum A str. Hall 5400465 YP_001386643.1 CDS CLC_0764 NC_009698.1 789756 790499 D identified by match to protein family HMM PF01061; drug resistance ABC-2 type transporter permease 789756..790499 Clostridium botulinum A str. Hall 5399517 YP_001386644.1 CDS CLC_0765 NC_009698.1 790707 792944 D identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 790707..792944 Clostridium botulinum A str. Hall 5401011 YP_001386645.1 CDS CLC_0766 NC_009698.1 793138 795396 D helicase 793138..795396 Clostridium botulinum A str. Hall 5399906 YP_001386646.1 CDS CLC_0767 NC_009698.1 795666 796373 R identified by match to protein family HMM PF07505; hypothetical protein complement(795666..796373) Clostridium botulinum A str. Hall 5398389 YP_001386647.1 CDS CLC_0768 NC_009698.1 796456 797310 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator complement(796456..797310) Clostridium botulinum A str. Hall 5401203 YP_001386648.1 CDS CLC_0769 NC_009698.1 797802 798683 R identified by match to protein family HMM PF00892; cysteine transporter complement(797802..798683) Clostridium botulinum A str. Hall 5398937 YP_001386650.1 CDS CLC_0771 NC_009698.1 799739 799999 D identified by match to protein family HMM PF04994; tfoX domain-containing protein 799739..799999 Clostridium botulinum A str. Hall 5398747 YP_001386651.1 CDS CLC_0772 NC_009698.1 800025 800519 D identified by match to protein family HMM PF00583; acetyltransferase 800025..800519 Clostridium botulinum A str. Hall 5400484 YP_001386652.1 CDS CLC_0773 NC_009698.1 800698 801696 R identified by match to protein family HMM PF08541; match to protein family HMM PF08545; 3-oxoacyl-ACP synthase complement(800698..801696) Clostridium botulinum A str. Hall 5398492 YP_001386653.1 CDS CLC_0774 NC_009698.1 801945 803411 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 801945..803411 Clostridium botulinum A str. Hall 5401245 YP_001386654.1 CDS CLC_0775 NC_009698.1 803904 804194 D hypothetical protein 803904..804194 Clostridium botulinum A str. Hall 5398824 YP_001386656.1 CDS CLC_0777 NC_009698.1 804393 805946 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 804393..805946 Clostridium botulinum A str. Hall 5399987 YP_001386658.1 CDS CLC_0779 NC_009698.1 806248 806874 D identified by match to protein family HMM PF01965; DJ-1/PfpI family protein 806248..806874 Clostridium botulinum A str. Hall 5401357 YP_001386659.1 CDS CLC_0780 NC_009698.1 807101 808009 R identified by match to protein family HMM PF00291; cysteine synthase complement(807101..808009) Clostridium botulinum A str. Hall 5400748 YP_001386660.1 CDS luxS NC_009698.1 807993 808445 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(807993..808445) Clostridium botulinum A str. Hall 5401749 YP_001386661.1 CDS metC NC_009698.1 808447 809589 R identified by match to protein family HMM PF01053; match to protein family HMM PF01212; cystathionine beta-lyase complement(808447..809589) Clostridium botulinum A str. Hall 5399914 YP_001386662.1 CDS CLC_0783 NC_009698.1 809690 810316 R identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein complement(809690..810316) Clostridium botulinum A str. Hall 5399874 YP_001386664.1 CDS CLC_0785 NC_009698.1 811226 813079 D identified by similarity to GB:BAA34922.1; match to protein family HMM PF00704; chitinase 811226..813079 Clostridium botulinum A str. Hall 5398639 YP_001386665.1 CDS CLC_0786 NC_009698.1 813445 813684 D identified by match to protein family HMM PF00403; heavy metal binding protein 813445..813684 Clostridium botulinum A str. Hall 5398474 YP_001386666.1 CDS CLC_0787 NC_009698.1 813798 814130 R hypothetical protein complement(813798..814130) Clostridium botulinum A str. Hall 5398385 YP_001386667.1 CDS CLC_0788 NC_009698.1 814218 814718 R identified by match to protein family HMM PF06172; hypothetical protein complement(814218..814718) Clostridium botulinum A str. Hall 5401366 YP_001386668.1 CDS CLC_0789 NC_009698.1 815252 815860 R identified by Glimmer3; hypothetical protein complement(815252..815860) Clostridium botulinum A str. Hall 5400394 YP_001386669.1 CDS CLC_0790 NC_009698.1 815953 816375 R identified by match to protein family HMM PF01381; DNA-binding protein complement(815953..816375) Clostridium botulinum A str. Hall 5401507 YP_001386671.1 CDS CLC_0792 NC_009698.1 816821 818080 D identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; dnaD protein 816821..818080 Clostridium botulinum A str. Hall 5400230 YP_001386672.1 CDS CLC_0793 NC_009698.1 818099 818638 D identified by match to protein family HMM TIGR02937; sigma-70 family RNA polymerase sigma factor 818099..818638 Clostridium botulinum A str. Hall 5398994 YP_001386673.1 CDS CLC_0794 NC_009698.1 818724 819080 D identified by match to protein family HMM TIGR02436; hypothetical protein 818724..819080 Clostridium botulinum A str. Hall 5399553 YP_001386674.1 CDS CLC_0795 NC_009698.1 819221 819400 D hypothetical protein 819221..819400 Clostridium botulinum A str. Hall 5399064 YP_001386675.1 CDS CLC_0796 NC_009698.1 819644 820474 D identified by Glimmer3; hypothetical protein 819644..820474 Clostridium botulinum A str. Hall 5399057 YP_001386676.1 CDS CLC_0797 NC_009698.1 820712 820933 D hypothetical protein 820712..820933 Clostridium botulinum A str. Hall 5398675 YP_001386677.1 CDS CLC_0798 NC_009698.1 820953 821180 D hypothetical protein 820953..821180 Clostridium botulinum A str. Hall 5400813 YP_001386678.1 CDS CLC_0799 NC_009698.1 821329 822033 D identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 821329..822033 Clostridium botulinum A str. Hall 5398426 YP_001386679.1 CDS CLC_0801 NC_009698.1 822745 823023 D hypothetical protein 822745..823023 Clostridium botulinum A str. Hall 5399156 YP_001386680.1 CDS CLC_0802 NC_009698.1 823054 823287 D bacteriocin 823054..823287 Clostridium botulinum A str. Hall 5399063 YP_001386681.1 CDS CLC_0805 NC_009698.1 824836 825177 R identified by Glimmer3; hypothetical protein complement(824836..825177) Clostridium botulinum A str. Hall 5399096 YP_001386682.1 CDS CLC_0806 NC_009698.1 825718 826170 D hypothetical protein 825718..826170 Clostridium botulinum A str. Hall 5400859 YP_001386683.1 CDS CLC_0807 NC_009698.1 826469 827446 R identified by match to protein family HMM PF01476; match to protein family HMM PF07485; LysM domain-containing protein complement(826469..827446) Clostridium botulinum A str. Hall 5401750 YP_001386684.1 CDS CLC_0808 NC_009698.1 827711 828127 D identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 827711..828127 Clostridium botulinum A str. Hall 5400010 YP_001386685.1 CDS CLC_0809 NC_009698.1 828463 828906 R identified by match to protein family HMM TIGR01909; hypothetical protein complement(828463..828906) Clostridium botulinum A str. Hall 5401759 YP_001386686.1 CDS arsR NC_009698.1 829354 829677 D identified by match to protein family HMM PF01022; arsenical resistance operon repressor ArsR 829354..829677 Clostridium botulinum A str. Hall 5399165 YP_001386687.1 CDS arsD NC_009698.1 829699 830070 D identified by match to protein family HMM PF06953; arsenical resistence operon repressor ArsD 829699..830070 Clostridium botulinum A str. Hall 5401179 YP_001386688.1 CDS arsA NC_009698.1 830089 831834 D identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase ArsA 830089..831834 Clostridium botulinum A str. Hall 5401646 YP_001386689.1 CDS arsB NC_009698.1 831933 833003 D identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenical-resistance protein 831933..833003 Clostridium botulinum A str. Hall 5400115 YP_001386691.1 CDS CLC_0815 NC_009698.1 834397 834945 D identified by match to protein family HMM PF00300; phosphoglycerate mutase 834397..834945 Clostridium botulinum A str. Hall 5399547 YP_001386692.1 CDS CLC_0816 NC_009698.1 835453 836031 D identified by match to protein family HMM PF00440; transcriptional regulator 835453..836031 Clostridium botulinum A str. Hall 5399026 YP_001386693.1 CDS CLC_0817 NC_009698.1 836041 836298 D identified by Glimmer3; hypothetical protein 836041..836298 Clostridium botulinum A str. Hall 5401191 YP_001386694.1 CDS CLC_0818 NC_009698.1 836327 836515 D hypothetical protein 836327..836515 Clostridium botulinum A str. Hall 5401397 YP_001386695.1 CDS CLC_0819 NC_009698.1 836770 836964 D identified by match to protein family HMM PF01381; DNA-binding protein 836770..836964 Clostridium botulinum A str. Hall 5400898 YP_001386696.1 CDS CLC_0820 NC_009698.1 836968 837399 D identified by Glimmer3; hypothetical protein 836968..837399 Clostridium botulinum A str. Hall 5400922 YP_001386697.1 CDS CLC_0821 NC_009698.1 837773 838708 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 837773..838708 Clostridium botulinum A str. Hall 5401676 YP_001386698.1 CDS CLC_0822 NC_009698.1 838701 839837 D hypothetical protein 838701..839837 Clostridium botulinum A str. Hall 5400953 YP_001386699.1 CDS CLC_0823 NC_009698.1 840528 840989 D hypothetical protein 840528..840989 Clostridium botulinum A str. Hall 5401257 YP_001386700.1 CDS thyA NC_009698.1 840979 841953 D identified by match to protein family HMM PF00303; thymidylate synthase 840979..841953 Clostridium botulinum A str. Hall 5399383 YP_001386701.1 CDS CLC_0825 NC_009698.1 841965 842723 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methlytransferase 841965..842723 Clostridium botulinum A str. Hall 5401088 YP_001386702.1 CDS CLC_0826 NC_009698.1 842769 843983 D thiaminase I 842769..843983 Clostridium botulinum A str. Hall 5398455 YP_001386703.1 CDS thiD-2 NC_009698.1 844061 844888 D identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 844061..844888 Clostridium botulinum A str. Hall 5399688 YP_001386704.1 CDS CLC_0828 NC_009698.1 845060 845293 D identified by Glimmer3; hypothetical protein 845060..845293 Clostridium botulinum A str. Hall 5399492 YP_001386705.1 CDS CLC_0829 NC_009698.1 845502 845966 R identified by match to protein family HMM PF06695; transporter complement(845502..845966) Clostridium botulinum A str. Hall 5400699 YP_001386706.1 CDS CLC_0830 NC_009698.1 846362 847150 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 846362..847150 Clostridium botulinum A str. Hall 5398556 YP_001386707.1 CDS CLC_0831 NC_009698.1 847153 848850 D hypothetical protein 847153..848850 Clostridium botulinum A str. Hall 5400099 YP_001386708.1 CDS CLC_0832 NC_009698.1 849126 849818 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 849126..849818 Clostridium botulinum A str. Hall 5401035 YP_001386709.1 CDS CLC_0833 NC_009698.1 850239 851159 D identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein 850239..851159 Clostridium botulinum A str. Hall 5401384 YP_001386710.1 CDS CLC_0834 NC_009698.1 851159 851950 D hypothetical protein 851159..851950 Clostridium botulinum A str. Hall 5401798 YP_001386711.1 CDS CLC_0835 NC_009698.1 852201 853058 D identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 852201..853058 Clostridium botulinum A str. Hall 5399901 YP_001386712.1 CDS CLC_0836 NC_009698.1 853103 854008 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 853103..854008 Clostridium botulinum A str. Hall 5399660 YP_001386713.1 CDS CLC_0837 NC_009698.1 854963 855958 D hypothetical protein 854963..855958 Clostridium botulinum A str. Hall 5399126 YP_001386714.1 CDS CLC_0838 NC_009698.1 856238 857263 D hypothetical protein 856238..857263 Clostridium botulinum A str. Hall 5399462 YP_001386715.1 CDS CLC_0839 NC_009698.1 857447 858139 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 857447..858139 Clostridium botulinum A str. Hall 5400766 YP_001386716.1 CDS CLC_0840 NC_009698.1 858126 860792 D identified by match to protein family HMM PF02687; ABC transporter permease 858126..860792 Clostridium botulinum A str. Hall 5401340 YP_001386717.1 CDS CLC_0841 NC_009698.1 861003 861122 D identified by Glimmer3; hypothetical protein 861003..861122 Clostridium botulinum A str. Hall 5398871 YP_001386718.1 CDS CLC_0842 NC_009698.1 861350 862063 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 861350..862063 Clostridium botulinum A str. Hall 5398349 YP_001386719.1 CDS CLC_0843 NC_009698.1 862217 863479 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 862217..863479 Clostridium botulinum A str. Hall 5400724 YP_001386720.1 CDS CLC_0844 NC_009698.1 863669 864310 D identified by match to protein family HMM PF06555; hypothetical protein 863669..864310 Clostridium botulinum A str. Hall 5400290 YP_001386721.1 CDS CLC_0845 NC_009698.1 864401 864589 R identified by match to protein family HMM TIGR02861; small acid-soluble spore protein, H-type complement(864401..864589) Clostridium botulinum A str. Hall 5398370 YP_001386722.1 CDS CLC_0846 NC_009698.1 864919 865698 D hypothetical protein 864919..865698 Clostridium botulinum A str. Hall 5398461 YP_001386723.1 CDS dapB-1 NC_009698.1 866364 867161 D identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 866364..867161 Clostridium botulinum A str. Hall 5399938 YP_001386724.1 CDS CLC_0848 NC_009698.1 867183 868022 D identified by match to protein family HMM PF00581; sulfurtransferase 867183..868022 Clostridium botulinum A str. Hall 5401188 YP_001386725.1 CDS CLC_0849 NC_009698.1 868530 869201 R identified by Glimmer3; hypothetical protein complement(868530..869201) Clostridium botulinum A str. Hall 5399929 YP_001386726.1 CDS CLC_0850 NC_009698.1 869699 870478 R identified by similarity to GB:CAD51899.1; hypothetical protein complement(869699..870478) Clostridium botulinum A str. Hall 5399275 YP_001386727.1 CDS CLC_0851 NC_009698.1 870524 870814 R identified by similarity to RF:XP_857072.1; hypothetical protein complement(870524..870814) Clostridium botulinum A str. Hall 5398229 YP_001386729.1 CDS CLC_0853 NC_009698.1 871441 871698 D identified by Glimmer3; hypothetical protein 871441..871698 Clostridium botulinum A str. Hall 5398516 YP_001386730.1 CDS CLC_0854 NC_009698.1 871992 873413 D identified by match to protein family HMM PF00669; flagellin 871992..873413 Clostridium botulinum A str. Hall 5399316 YP_001386732.1 CDS CLC_0856 NC_009698.1 873927 874280 R transposase, OrfA complement(873927..874280) Clostridium botulinum A str. Hall 5399328 YP_001386733.1 CDS ha70 NC_009698.1 874375 876255 R identified by match to protein family HMM PF03505; hemagglutinin component HA70 complement(874375..876255) Clostridium botulinum A str. Hall 5401021 YP_001386734.1 CDS ha17 NC_009698.1 876269 876709 R identified by match to protein family HMM PF05588; hemagglutinin component HA17 complement(876269..876709) Clostridium botulinum A str. Hall 5398652 YP_001386735.1 CDS ha33 NC_009698.1 876772 877653 R identified by match to protein family HMM PF00652; hemagglutinin component HA33 complement(876772..877653) Clostridium botulinum A str. Hall 5401102 YP_001386736.1 CDS botR NC_009698.1 877880 878416 D identified by similarity to PIR:S68219; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209; transcriptional regulator BotR, P-21 877880..878416 Clostridium botulinum A str. Hall 5398304 YP_001386737.1 CDS ntnH NC_009698.1 878578 882159 D identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470; botulinum neurotoxin type A1 nontoxic-nonhemagglutinin subunit 878578..882159 Clostridium botulinum A str. Hall 5399001 YP_001386738.1 CDS boNT/A1 NC_009698.1 882203 886093 D identified by similarity to SP:P10845; similarity to SP:P30996; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953; botulinum neurotoxin type A1 882203..886093 Clostridium botulinum A str. Hall 5398487 YP_001386739.1 CDS CLC_0865 NC_009698.1 887371 888093 D identified by match to protein family HMM PF00665; IS3 family transposase 887371..888093 Clostridium botulinum A str. Hall 5398963 YP_001386740.1 CDS CLC_0866 NC_009698.1 888278 889675 D identified by Glimmer3; hypothetical protein 888278..889675 Clostridium botulinum A str. Hall 5401835 YP_001386741.1 CDS CLC_0867 NC_009698.1 890011 891180 D identified by match to protein family HMM PF01979; amidohydrolase 890011..891180 Clostridium botulinum A str. Hall 5398497 YP_001386742.1 CDS brnQ-1 NC_009698.1 891746 893047 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 891746..893047 Clostridium botulinum A str. Hall 5398463 YP_001386743.1 CDS brnQ-2 NC_009698.1 893198 894514 D identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 893198..894514 Clostridium botulinum A str. Hall 5398396 YP_001386744.1 CDS CLC_0870 NC_009698.1 894593 897073 R identified by match to protein family HMM PF00015; match to protein family HMM PF00496; methyl-accepting chemotaxis protein/ extracellular solute-binding protein family 5 complement(894593..897073) Clostridium botulinum A str. Hall 5399244 YP_001386745.1 CDS feoA-1 NC_009698.1 897296 897532 D identified by match to protein family HMM PF04023; ferrous iron transport protein A 897296..897532 Clostridium botulinum A str. Hall 5400311 YP_008472678.1 CDS FeoB NC_009698.1 897677 898459 D iron transporter FeoB 897677..898459 Clostridium botulinum A str. Hall 16691475 YP_008472679.1 CDS FeoB NC_009698.1 898456 899979 D iron transporter FeoB 898456..899979 Clostridium botulinum A str. Hall 16691474 YP_001386746.1 CDS cobC NC_009698.1 900694 901308 D identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase 900694..901308 Clostridium botulinum A str. Hall 5400186 YP_001386747.1 CDS CLC_0875 NC_009698.1 901453 903015 D identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 901453..903015 Clostridium botulinum A str. Hall 5399583 YP_001386748.1 CDS cobS NC_009698.1 903286 904032 D catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 903286..904032 Clostridium botulinum A str. Hall 5399364 YP_001386749.1 CDS CLC_0877 NC_009698.1 904490 905266 D hypothetical protein 904490..905266 Clostridium botulinum A str. Hall 5399823 YP_001386750.1 CDS CLC_0878 NC_009698.1 905575 905856 D hypothetical protein 905575..905856 Clostridium botulinum A str. Hall 5398348 YP_001386751.1 CDS CLC_0879 NC_009698.1 905987 906169 D hypothetical protein 905987..906169 Clostridium botulinum A str. Hall 5398594 YP_001386752.1 CDS CLC_0880 NC_009698.1 906187 906435 D identified by match to protein family HMM PF07875; hypothetical protein 906187..906435 Clostridium botulinum A str. Hall 5401619 YP_001386753.1 CDS CLC_0881 NC_009698.1 907004 908356 D hypothetical protein 907004..908356 Clostridium botulinum A str. Hall 5400545 YP_001386754.1 CDS CLC_0882 NC_009698.1 908627 908980 D identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367; 6-pyruvoyl-tetrahydropterin synthase 908627..908980 Clostridium botulinum A str. Hall 5399361 YP_001386755.1 CDS folP NC_009698.1 909075 910271 D identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 909075..910271 Clostridium botulinum A str. Hall 5399141 YP_001386756.1 CDS CLC_0884 NC_009698.1 910403 910654 D hypothetical protein 910403..910654 Clostridium botulinum A str. Hall 5398998 YP_001386757.1 CDS folK NC_009698.1 910754 911209 D identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 910754..911209 Clostridium botulinum A str. Hall 5400193 YP_001386758.1 CDS CLC_0886 NC_009698.1 911328 911768 D identified by match to protein family HMM PF00011; heat shock protein 911328..911768 Clostridium botulinum A str. Hall 5398539 YP_001386759.1 CDS CLC_0887 NC_009698.1 912088 913440 D identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; MerR family transcriptional regulator 912088..913440 Clostridium botulinum A str. Hall 5401050 YP_001386760.1 CDS CLC_0888 NC_009698.1 913495 914670 D identified by match to protein family HMM PF01041; exopolysaccharide biosynthesis protein 913495..914670 Clostridium botulinum A str. Hall 5401359 YP_001386761.1 CDS CLC_0889 NC_009698.1 914812 915933 D identified by match to protein family HMM PF01041; pleiotropic regulatory protein 914812..915933 Clostridium botulinum A str. Hall 5399892 YP_001386762.1 CDS CLC_0890 NC_009698.1 916530 917477 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 916530..917477 Clostridium botulinum A str. Hall 5400754 YP_001386763.1 CDS CLC_0891 NC_009698.1 917771 918283 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954; ECF subfamily RNA polymerase sigma factor 917771..918283 Clostridium botulinum A str. Hall 5399774 YP_001386764.1 CDS CLC_0892 NC_009698.1 918288 919451 D identified by Glimmer3; hypothetical protein 918288..919451 Clostridium botulinum A str. Hall 5399102 YP_001386765.1 CDS CLC_0893 NC_009698.1 919743 920297 R flavoredoxin complement(919743..920297) Clostridium botulinum A str. Hall 5401786 YP_001386766.1 CDS CLC_0894 NC_009698.1 920616 921428 D identified by match to protein family HMM PF00561; non-heme haloperoxidase 920616..921428 Clostridium botulinum A str. Hall 5400513 YP_001386767.1 CDS cadD NC_009698.1 921728 922396 D identified by match to protein family HMM PF03596; cadmium resistance transporter CadD 921728..922396 Clostridium botulinum A str. Hall 5400822 YP_001386768.1 CDS CLC_0896 NC_009698.1 922545 922961 D identified by match to protein family HMM PF04463; hypothetical protein 922545..922961 Clostridium botulinum A str. Hall 5398667 YP_001386769.1 CDS CLC_0897 NC_009698.1 923499 924293 R ABC transporter permease complement(923499..924293) Clostridium botulinum A str. Hall 5398657 YP_001386770.1 CDS CLC_0898 NC_009698.1 924312 925229 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(924312..925229) Clostridium botulinum A str. Hall 5398934 YP_001386771.1 CDS CLC_0899 NC_009698.1 925226 926347 R identified by match to protein family HMM PF01381; DNA-binding protein complement(925226..926347) Clostridium botulinum A str. Hall 5400499 YP_008472680.1 CDS CLC_04395 NC_009698.1 926779 927126 D hypothetical protein 926779..927126 Clostridium botulinum A str. Hall 16691476 YP_001386773.1 CDS CLC_0901 NC_009698.1 927783 928631 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 927783..928631 Clostridium botulinum A str. Hall 5398734 YP_001386774.1 CDS CLC_0902 NC_009698.1 928806 929174 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 928806..929174 Clostridium botulinum A str. Hall 5399650 YP_001386775.1 CDS CLC_0903 NC_009698.1 929521 930333 D identified by match to protein family HMM PF00561; non-heme haloperoxidase 929521..930333 Clostridium botulinum A str. Hall 5399039 YP_001386776.1 CDS CLC_0904 NC_009698.1 930856 931431 D identified by match to protein family HMM PF00583; acetyltransferase 930856..931431 Clostridium botulinum A str. Hall 5398227 YP_001386777.1 CDS CLC_0905 NC_009698.1 931489 932142 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 931489..932142 Clostridium botulinum A str. Hall 5401442 YP_001386778.1 CDS CLC_0906 NC_009698.1 932412 932981 R identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein complement(932412..932981) Clostridium botulinum A str. Hall 5398906 YP_001386779.1 CDS CLC_0907 NC_009698.1 932999 933553 R identified by match to protein family HMM PF02525; match to protein family HMM PF03358; NADPH-dependent FMN reductase complement(932999..933553) Clostridium botulinum A str. Hall 5401607 YP_001386780.1 CDS CLC_0908 NC_009698.1 933658 933984 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(933658..933984) Clostridium botulinum A str. Hall 5399066 YP_001386781.1 CDS CLC_0909 NC_009698.1 934328 935155 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(934328..935155) Clostridium botulinum A str. Hall 5400631 YP_001386782.1 CDS CLC_0910 NC_009698.1 935268 935885 D identified by match to protein family HMM PF00583; acetyltransferase 935268..935885 Clostridium botulinum A str. Hall 5400897 YP_001386783.1 CDS CLC_0911 NC_009698.1 936091 936606 D identified by match to protein family HMM PF04229; hypothetical protein 936091..936606 Clostridium botulinum A str. Hall 5398902 YP_001386784.1 CDS CLC_0912 NC_009698.1 936669 937193 D identified by match to protein family HMM PF00583; acetyltransferase 936669..937193 Clostridium botulinum A str. Hall 5398296 YP_001386785.1 CDS CLC_0913 NC_009698.1 937898 938599 R identified by match to protein family HMM PF02678; hypothetical protein complement(937898..938599) Clostridium botulinum A str. Hall 5401248 YP_001386786.1 CDS CLC_0914 NC_009698.1 938874 939182 R identified by match to protein family HMM PF01638; transcriptional regulator complement(938874..939182) Clostridium botulinum A str. Hall 5399840 YP_001386787.1 CDS CLC_0915 NC_009698.1 939311 939940 D identified by match to protein family HMM PF00881; nitroreductase 939311..939940 Clostridium botulinum A str. Hall 5401116 YP_001386788.1 CDS CLC_0916 NC_009698.1 940304 941746 D lipase 940304..941746 Clostridium botulinum A str. Hall 5400048 YP_001386789.1 CDS oxdD NC_009698.1 941981 943189 R identified by match to protein family HMM PF00190; match to protein family HMM PF07883; oxalate decarboxylase complement(941981..943189) Clostridium botulinum A str. Hall 5401282 YP_001386790.1 CDS CLC_0918 NC_009698.1 943355 943933 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase complement(943355..943933) Clostridium botulinum A str. Hall 5401504 YP_001386791.1 CDS CLC_0919 NC_009698.1 943991 944446 R identified by match to protein family HMM PF04657; hypothetical protein complement(943991..944446) Clostridium botulinum A str. Hall 5400944 YP_001386792.1 CDS CLC_0920 NC_009698.1 944560 945447 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 944560..945447 Clostridium botulinum A str. Hall 5399969 YP_001386793.1 CDS CLC_0921 NC_009698.1 945720 946166 D identified by match to protein family HMM PF00583; acetyltransferase 945720..946166 Clostridium botulinum A str. Hall 5400729 YP_001386794.1 CDS CLC_0923 NC_009698.1 946817 947227 R hypothetical protein complement(946817..947227) Clostridium botulinum A str. Hall 5399986 YP_001386795.1 CDS CLC_0924 NC_009698.1 947296 947670 D hypothetical protein 947296..947670 Clostridium botulinum A str. Hall 5398376 YP_001386796.1 CDS CLC_0925 NC_009698.1 947730 948152 R hypothetical protein complement(947730..948152) Clostridium botulinum A str. Hall 5401415 YP_001386797.1 CDS CLC_0926 NC_009698.1 948275 949207 D identified by match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 948275..949207 Clostridium botulinum A str. Hall 5399441 YP_001386798.1 CDS CLC_0927 NC_009698.1 949415 949885 R hypothetical protein complement(949415..949885) Clostridium botulinum A str. Hall 5398806 YP_001386799.1 CDS CLC_0928 NC_009698.1 949885 950664 R hypothetical protein complement(949885..950664) Clostridium botulinum A str. Hall 5400858 YP_001386800.1 CDS CLC_0929 NC_009698.1 951327 951827 R identified by match to protein family HMM PF01327; peptide deformylase complement(951327..951827) Clostridium botulinum A str. Hall 5400856 YP_001386801.1 CDS CLC_0930 NC_009698.1 952060 953496 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 952060..953496 Clostridium botulinum A str. Hall 5401600 YP_001386802.1 CDS CLC_0931 NC_009698.1 953574 954092 R identified by match to protein family HMM PF00881; nitroreductase complement(953574..954092) Clostridium botulinum A str. Hall 5401135 YP_001386803.1 CDS CLC_0932 NC_009698.1 954335 955141 R identified by match to protein family HMM PF00037; (Fe-S)-binding protein complement(954335..955141) Clostridium botulinum A str. Hall 5398612 YP_001386804.1 CDS CLC_0933 NC_009698.1 955913 956746 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 955913..956746 Clostridium botulinum A str. Hall 5398893 YP_001386805.1 CDS CLC_0934 NC_009698.1 956871 958760 D identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 956871..958760 Clostridium botulinum A str. Hall 5401621 YP_001386806.1 CDS CLC_0935 NC_009698.1 959089 960510 D identified by match to protein family HMM PF00232; glycosyl hydrolase 959089..960510 Clostridium botulinum A str. Hall 5398926 YP_001386807.1 CDS CLC_0936 NC_009698.1 960638 960844 D identified by Glimmer3; hypothetical protein 960638..960844 Clostridium botulinum A str. Hall 5398976 YP_001386808.1 CDS mraY-1 NC_009698.1 961046 961999 R identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(961046..961999) Clostridium botulinum A str. Hall 5400547 YP_001386809.1 CDS CLC_0938 NC_009698.1 962412 963272 D identified by match to protein family HMM PF01381; DNA-binding protein 962412..963272 Clostridium botulinum A str. Hall 5399089 YP_001386810.1 CDS CLC_0939 NC_009698.1 963696 964130 D chloramphenicol O-acetyltransferase 963696..964130 Clostridium botulinum A str. Hall 5399576 YP_001386811.1 CDS CLC_0941 NC_009698.1 965107 965730 D identified by match to protein family HMM PF06555; hypothetical protein 965107..965730 Clostridium botulinum A str. Hall 5398729 YP_001386812.1 CDS CLC_0942 NC_009698.1 966332 968131 R identified by match to protein family HMM PF00394; match to protein family HMM PF07731; multicopper oxidase complement(966332..968131) Clostridium botulinum A str. Hall 5400259 YP_001386813.1 CDS CLC_0943 NC_009698.1 968295 968474 D hypothetical protein 968295..968474 Clostridium botulinum A str. Hall 5400793 YP_001386814.1 CDS CLC_0944 NC_009698.1 968716 969105 R hypothetical protein complement(968716..969105) Clostridium botulinum A str. Hall 5400195 YP_001386815.1 CDS CLC_0945 NC_009698.1 969297 970244 D identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 969297..970244 Clostridium botulinum A str. Hall 5398989 YP_001386816.1 CDS CLC_0946 NC_009698.1 970773 972005 R identified by match to protein family HMM PF04371; peptidyl-arginine deiminase complement(970773..972005) Clostridium botulinum A str. Hall 5401052 YP_008472681.1 CDS CLC_0947 NC_009698.1 972302 972910 D transcriptional regulator 972302..972910 Clostridium botulinum A str. Hall 5399204 YP_001386817.1 CDS CLC_0948 NC_009698.1 972940 973803 D identified by match to protein family HMM PF00892; DMT family permease 972940..973803 Clostridium botulinum A str. Hall 5398499 YP_001386818.1 CDS CLC_0949 NC_009698.1 974159 974746 D identified by match to protein family HMM PF04229; hypothetical protein 974159..974746 Clostridium botulinum A str. Hall 5401286 YP_001386819.1 CDS CLC_0950 NC_009698.1 974827 975204 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(974827..975204) Clostridium botulinum A str. Hall 5400477 YP_001386820.1 CDS CLC_0951 NC_009698.1 975378 975707 R identified by Glimmer3; hypothetical protein complement(975378..975707) Clostridium botulinum A str. Hall 5400021 YP_001386821.1 CDS CLC_0952 NC_009698.1 975971 976279 R hypothetical protein complement(975971..976279) Clostridium botulinum A str. Hall 5401495 YP_001386822.1 CDS CLC_0953 NC_009698.1 976385 976594 R acetyltransferase domain-containing protein complement(976385..976594) Clostridium botulinum A str. Hall 5400717 YP_001386823.1 CDS CLC_0954 NC_009698.1 976960 977730 D identified by Glimmer3; hypothetical protein 976960..977730 Clostridium botulinum A str. Hall 5399181 YP_001386824.1 CDS CLC_0955 NC_009698.1 978269 979876 D hypothetical protein 978269..979876 Clostridium botulinum A str. Hall 5399483 YP_001386826.1 CDS CLC_0957 NC_009698.1 980240 982600 R identified by match to protein family HMM PF00005; match to protein family HMM PF02687; ABC transporter ATP-binding protein/permease complement(980240..982600) Clostridium botulinum A str. Hall 5400777 YP_001386827.1 CDS CLC_0958 NC_009698.1 982760 983431 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 982760..983431 Clostridium botulinum A str. Hall 5399138 YP_001386828.1 CDS CLC_0960 NC_009698.1 984810 985358 D identified by match to protein family HMM PF02632; BioY family protein 984810..985358 Clostridium botulinum A str. Hall 5399311 YP_001386829.1 CDS CLC_0961 NC_009698.1 985763 987469 D identified by Glimmer3; hypothetical protein 985763..987469 Clostridium botulinum A str. Hall 5401076 YP_001386830.1 CDS CLC_0962 NC_009698.1 987811 988356 D identified by match to protein family HMM PF00583; acetyltransferase 987811..988356 Clostridium botulinum A str. Hall 5398766 YP_001386831.1 CDS CLC_0963 NC_009698.1 988435 990042 D identified by match to protein family HMM PF00717; match to protein family HMM TIGR00498; LexA repressor 988435..990042 Clostridium botulinum A str. Hall 5400867 YP_001386832.1 CDS cobU NC_009698.1 990320 990877 D catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 990320..990877 Clostridium botulinum A str. Hall 5399922 YP_001386833.1 CDS tipA NC_009698.1 991299 992063 R identified by match to protein family HMM PF00376; match to protein family HMM PF07739; transcriptional activator TipA complement(991299..992063) Clostridium botulinum A str. Hall 5400474 YP_001386836.1 CDS cobQ NC_009698.1 992769 994250 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 992769..994250 Clostridium botulinum A str. Hall 5400053 YP_001386837.1 CDS cobD NC_009698.1 994252 995214 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 994252..995214 Clostridium botulinum A str. Hall 5399562 YP_001386838.1 CDS CLC_0970 NC_009698.1 995433 996521 D identified by match to protein family HMM PF00155; aminotransferase 995433..996521 Clostridium botulinum A str. Hall 5398409 YP_001386839.1 CDS cbiM NC_009698.1 996795 997514 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 996795..997514 Clostridium botulinum A str. Hall 5398876 YP_001386840.1 CDS cbiN NC_009698.1 997518 997817 D identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165; cobalt transport protein 997518..997817 Clostridium botulinum A str. Hall 5398335 YP_001386841.2 CDS cbiQ NC_009698.1 997780 998478 D cobalt ABC transporter permease CbiQ 997780..998478 Clostridium botulinum A str. Hall 5401098 YP_001386842.1 CDS CLC_0974 NC_009698.1 998902 999549 D catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 998902..999549 Clostridium botulinum A str. Hall 5400109 YP_001386843.1 CDS hemC NC_009698.1 999518 1000390 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 999518..1000390 Clostridium botulinum A str. Hall 5398476 YP_001386844.1 CDS cobA/hemD NC_009698.1 1000526 1001986 D identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 1000526..1001986 Clostridium botulinum A str. Hall 5399405 YP_001386845.1 CDS CLC_0977 NC_009698.1 1002131 1002313 D hypothetical protein 1002131..1002313 Clostridium botulinum A str. Hall 5400837 YP_001386846.1 CDS hemB NC_009698.1 1002575 1003549 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1002575..1003549 Clostridium botulinum A str. Hall 5401208 YP_001386847.1 CDS cobB NC_009698.1 1003670 1004992 D responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1003670..1004992 Clostridium botulinum A str. Hall 5401572 YP_001386848.1 CDS cbiC NC_009698.1 1005017 1005643 D catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 1005017..1005643 Clostridium botulinum A str. Hall 5400376 YP_001386849.1 CDS CLC_0981 NC_009698.1 1005837 1006679 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 1005837..1006679 Clostridium botulinum A str. Hall 5398410 YP_001386850.1 CDS CLC_0982 NC_009698.1 1006855 1007598 D hypothetical protein 1006855..1007598 Clostridium botulinum A str. Hall 5399695 YP_001386851.1 CDS CLC_0983 NC_009698.1 1007904 1008512 D identified by match to protein family HMM PF01966; HD domain-containing protein 1007904..1008512 Clostridium botulinum A str. Hall 5399228 YP_001386852.1 CDS CLC_0984 NC_009698.1 1008568 1008936 D hypothetical protein 1008568..1008936 Clostridium botulinum A str. Hall 5398763 YP_001386853.1 CDS CLC_0985 NC_009698.1 1009058 1010332 D identified by Glimmer3; hypothetical protein 1009058..1010332 Clostridium botulinum A str. Hall 5399305 YP_001386854.1 CDS CLC_0986 NC_009698.1 1010409 1010837 D identified by match to protein family HMM PF00583; acetyltransferase 1010409..1010837 Clostridium botulinum A str. Hall 5398956 YP_001386855.1 CDS CLC_0987 NC_009698.1 1011088 1011789 D identified by match to protein family HMM PF02661; Fic family protein 1011088..1011789 Clostridium botulinum A str. Hall 5401254 YP_001386856.1 CDS CLC_0988 NC_009698.1 1011819 1012340 D identified by match to protein family HMM PF00881; nitroreductase 1011819..1012340 Clostridium botulinum A str. Hall 5401604 YP_001386857.1 CDS CLC_0989 NC_009698.1 1012407 1012703 D identified by Glimmer3; hypothetical protein 1012407..1012703 Clostridium botulinum A str. Hall 5400301 YP_001386858.1 CDS CLC_0990 NC_009698.1 1012811 1013344 D identified by match to protein family HMM PF04229; hypothetical protein 1012811..1013344 Clostridium botulinum A str. Hall 5398568 YP_001386859.1 CDS cbiD NC_009698.1 1013418 1014497 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1013418..1014497 Clostridium botulinum A str. Hall 5399556 YP_001386860.1 CDS cbiE NC_009698.1 1014674 1015324 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6y C5,15-methyltransferase subunit CbiE 1014674..1015324 Clostridium botulinum A str. Hall 5398404 YP_001386861.1 CDS CLC_0993 NC_009698.1 1015551 1016054 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 1015551..1016054 Clostridium botulinum A str. Hall 5401404 YP_001386862.1 CDS cbiT NC_009698.1 1016247 1016822 D identified by match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase subunit CbiT 1016247..1016822 Clostridium botulinum A str. Hall 5401763 YP_001386863.1 CDS CLC_0995 NC_009698.1 1016822 1017253 D hypothetical protein 1016822..1017253 Clostridium botulinum A str. Hall 5399495 YP_001386864.1 CDS CLC_0996 NC_009698.1 1017289 1017840 D hypothetical protein 1017289..1017840 Clostridium botulinum A str. Hall 5399319 YP_008472682.1 CDS CLC_0997 NC_009698.1 1017888 1018202 D hypothetical protein 1017888..1018202 Clostridium botulinum A str. Hall 5400619 YP_001386866.1 CDS CLC_0998 NC_009698.1 1018338 1018529 D identified by Glimmer3; hypothetical protein 1018338..1018529 Clostridium botulinum A str. Hall 5400506 YP_001386867.1 CDS CLC_0999 NC_009698.1 1018572 1019024 D hypothetical protein 1018572..1019024 Clostridium botulinum A str. Hall 5401816 YP_001386868.1 CDS CLC_1000 NC_009698.1 1019084 1019425 D hypothetical protein 1019084..1019425 Clostridium botulinum A str. Hall 5400584 YP_001386869.1 CDS CLC_1001 NC_009698.1 1019545 1020084 D identified by match to protein family HMM PF00857; isochorismatase 1019545..1020084 Clostridium botulinum A str. Hall 5400927 YP_001386870.1 CDS cobI NC_009698.1 1020379 1021095 D catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1020379..1021095 Clostridium botulinum A str. Hall 5401006 YP_001386871.1 CDS cobM NC_009698.1 1021114 1021878 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 1021114..1021878 Clostridium botulinum A str. Hall 5400654 YP_001386872.1 CDS cbiG NC_009698.1 1022169 1023221 D identified by match to protein family HMM PF01890; cobalamin biosynthesis protein CbiG 1022169..1023221 Clostridium botulinum A str. Hall 5400570 YP_001386873.1 CDS cobJ NC_009698.1 1023379 1024110 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 1023379..1024110 Clostridium botulinum A str. Hall 5401091 YP_001386874.1 CDS cobK NC_009698.1 1024244 1025011 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1024244..1025011 Clostridium botulinum A str. Hall 5400782 YP_001386875.1 CDS CLC_1007 NC_009698.1 1025091 1025579 D hypothetical protein 1025091..1025579 Clostridium botulinum A str. Hall 5401775 YP_001386876.1 CDS cbiK NC_009698.1 1025755 1026537 D identified by match to protein family HMM PF01903; match to protein family HMM PF06180; anaerobic sirohydrochlorin cobaltochelatase 1025755..1026537 Clostridium botulinum A str. Hall 5400367 YP_001386877.1 CDS CLC_1009 NC_009698.1 1026550 1027389 D identified by match to protein family HMM PF00288; kinase 1026550..1027389 Clostridium botulinum A str. Hall 5401268 YP_001386878.1 CDS cobO NC_009698.1 1027537 1028058 D catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1027537..1028058 Clostridium botulinum A str. Hall 5401163 YP_001386879.1 CDS CLC_1011 NC_009698.1 1028311 1029000 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1028311..1029000 Clostridium botulinum A str. Hall 5400579 YP_001386880.1 CDS CLC_1012 NC_009698.1 1029090 1029854 D identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 1029090..1029854 Clostridium botulinum A str. Hall 5399657 YP_001386881.1 CDS asrA NC_009698.1 1029874 1030902 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910; anaerobic sulfite reductase subunit A 1029874..1030902 Clostridium botulinum A str. Hall 5399173 YP_001386882.1 CDS asrB NC_009698.1 1030889 1031686 D with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1030889..1031686 Clostridium botulinum A str. Hall 5398601 YP_001386883.1 CDS arsC NC_009698.1 1031699 1032664 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C 1031699..1032664 Clostridium botulinum A str. Hall 5400738 YP_001386884.1 CDS CLC_1016 NC_009698.1 1033018 1034040 D identified by match to protein family HMM PF00994; molybdopterin binding protein 1033018..1034040 Clostridium botulinum A str. Hall 5401437 YP_001386885.1 CDS CLC_1017 NC_009698.1 1034352 1035152 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; anion ABC transporter solute-binding protein 1034352..1035152 Clostridium botulinum A str. Hall 5398810 YP_001386886.1 CDS CLC_1018 NC_009698.1 1035172 1035954 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; anion ABC transporter permease 1035172..1035954 Clostridium botulinum A str. Hall 5400238 YP_001386887.1 CDS CLC_1019 NC_009698.1 1035969 1036667 D identified by match to protein family HMM PF00005; anion ABC transporter ATP-binding protein 1035969..1036667 Clostridium botulinum A str. Hall 5401575 YP_001386888.1 CDS CLC_1020 NC_009698.1 1036651 1037379 D hypothetical protein 1036651..1037379 Clostridium botulinum A str. Hall 5400734 YP_001386889.1 CDS CLC_1021 NC_009698.1 1038210 1039229 D hypothetical protein 1038210..1039229 Clostridium botulinum A str. Hall 5401764 YP_001386890.1 CDS CLC_1022 NC_009698.1 1039250 1040137 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1039250..1040137 Clostridium botulinum A str. Hall 5399134 YP_001386891.1 CDS CLC_1023 NC_009698.1 1040141 1040917 D hypothetical protein 1040141..1040917 Clostridium botulinum A str. Hall 5398650 YP_001386892.1 CDS CLC_1024 NC_009698.1 1041562 1042284 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1041562..1042284 Clostridium botulinum A str. Hall 5398758 YP_001386893.1 CDS CLC_1025 NC_009698.1 1042274 1043695 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1042274..1043695 Clostridium botulinum A str. Hall 5399264 YP_001386894.1 CDS CLC_1026 NC_009698.1 1044073 1044843 R identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein complement(1044073..1044843) Clostridium botulinum A str. Hall 5398359 YP_001386895.1 CDS CLC_1027 NC_009698.1 1044844 1045911 R identified by match to protein family HMM PF00950; match to protein family HMM PF01032; iron ABC transporter permease complement(1044844..1045911) Clostridium botulinum A str. Hall 5399974 YP_001386896.1 CDS CLC_1028 NC_009698.1 1045924 1046946 R identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein complement(1045924..1046946) Clostridium botulinum A str. Hall 5400595 YP_001386897.1 CDS dhaKL NC_009698.1 1047504 1049264 R in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase complement(1047504..1049264) Clostridium botulinum A str. Hall 5399163 YP_001386898.1 CDS gldA NC_009698.1 1049275 1050405 R forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase complement(1049275..1050405) Clostridium botulinum A str. Hall 5400295 YP_001386899.1 CDS CLC_1031 NC_009698.1 1050717 1051754 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1050717..1051754) Clostridium botulinum A str. Hall 5401379 YP_001386900.1 CDS CLC_1032 NC_009698.1 1052132 1052308 D hypothetical protein 1052132..1052308 Clostridium botulinum A str. Hall 5401342 YP_001386901.1 CDS CLC_1033 NC_009698.1 1052343 1052807 D identified by match to protein family HMM PF00583; acetyltransferase 1052343..1052807 Clostridium botulinum A str. Hall 5400254 YP_001386902.1 CDS CLC_1034 NC_009698.1 1052834 1053277 D identified by match to protein family HMM PF00583; acetyltransferase 1052834..1053277 Clostridium botulinum A str. Hall 5398469 YP_001386903.1 CDS CLC_1035 NC_009698.1 1053430 1054023 D identified by match to protein family HMM PF07081; hypothetical protein 1053430..1054023 Clostridium botulinum A str. Hall 5399832 YP_001386904.1 CDS CLC_1036 NC_009698.1 1054086 1054289 D identified by Glimmer3; hypothetical protein 1054086..1054289 Clostridium botulinum A str. Hall 5399503 YP_001386905.1 CDS CLC_1037 NC_009698.1 1054407 1055252 D identified by match to protein family HMM PF00248; aldo/keto reductase 1054407..1055252 Clostridium botulinum A str. Hall 5398605 YP_001386906.1 CDS CLC_1038 NC_009698.1 1055353 1055676 D identified by match to protein family HMM PF04993; TfoX domain-containing protein 1055353..1055676 Clostridium botulinum A str. Hall 5398920 YP_001386907.1 CDS CLC_1039 NC_009698.1 1055722 1056576 D identified by match to protein family HMM PF00583; acetyltransferase 1055722..1056576 Clostridium botulinum A str. Hall 5400207 YP_001386908.1 CDS CLC_1040 NC_009698.1 1056786 1057100 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 1056786..1057100 Clostridium botulinum A str. Hall 5401692 YP_001386909.1 CDS CLC_1041 NC_009698.1 1057117 1057737 D hypothetical protein 1057117..1057737 Clostridium botulinum A str. Hall 5399725 YP_001386910.1 CDS CLC_1042 NC_009698.1 1057872 1058366 D hypothetical protein 1057872..1058366 Clostridium botulinum A str. Hall 5398380 YP_001386911.1 CDS add NC_009698.1 1058999 1060006 R catalyzes the formation of inosine from adenosine; adenosine deaminase complement(1058999..1060006) Clostridium botulinum A str. Hall 5399812 YP_001386912.1 CDS CLC_1044 NC_009698.1 1060910 1063078 D identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 1060910..1063078 Clostridium botulinum A str. Hall 5400219 YP_001386913.1 CDS CLC_1045 NC_009698.1 1063104 1065263 D identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 1063104..1065263 Clostridium botulinum A str. Hall 5399508 YP_001386914.1 CDS CLC_1046 NC_009698.1 1065624 1065926 R hypothetical protein complement(1065624..1065926) Clostridium botulinum A str. Hall 5400445 YP_001386915.1 CDS CLC_1047 NC_009698.1 1066117 1066872 D hypothetical protein 1066117..1066872 Clostridium botulinum A str. Hall 5401704 YP_001386916.1 CDS recQ NC_009698.1 1067116 1069245 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 1067116..1069245 Clostridium botulinum A str. Hall 5398480 YP_001386917.1 CDS CLC_1049 NC_009698.1 1069417 1069848 D identified by match to protein family HMM PF02915; ferritin 1069417..1069848 Clostridium botulinum A str. Hall 5401388 YP_001386918.1 CDS CLC_1050 NC_009698.1 1070131 1070676 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(1070131..1070676) Clostridium botulinum A str. Hall 5399183 YP_001386919.1 CDS CLC_1051 NC_009698.1 1071313 1071696 D identified by match to protein family HMM PF00072; response regulator 1071313..1071696 Clostridium botulinum A str. Hall 5398938 YP_001386920.1 CDS CLC_1052 NC_009698.1 1071811 1074285 D identified by match to protein family HMM PF07656; hypothetical protein 1071811..1074285 Clostridium botulinum A str. Hall 5399961 YP_001386921.1 CDS CLC_1053 NC_009698.1 1074732 1074947 D identified by Glimmer3; hypothetical protein 1074732..1074947 Clostridium botulinum A str. Hall 5400711 YP_001386922.1 CDS CLC_1054 NC_009698.1 1074949 1075767 D hypothetical protein 1074949..1075767 Clostridium botulinum A str. Hall 5401216 YP_001386923.1 CDS CLC_1055 NC_009698.1 1075767 1076360 D identified by match to protein family HMM PF04055; anaerobic ribonucleoside-triphosphate reductase activating protein 1075767..1076360 Clostridium botulinum A str. Hall 5400463 YP_001386924.1 CDS CLC_1056 NC_009698.1 1076374 1078047 D identified by match to protein family HMM PF00004; ATPase AAA 1076374..1078047 Clostridium botulinum A str. Hall 5399862 YP_001386925.1 CDS CLC_1057 NC_009698.1 1078062 1078832 D identified by Glimmer3; hypothetical protein 1078062..1078832 Clostridium botulinum A str. Hall 5398638 YP_001386926.1 CDS lctP NC_009698.1 1079316 1080839 D identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795; L-lactate permease 1079316..1080839 Clostridium botulinum A str. Hall 5399005 YP_001386927.1 CDS CLC_1059 NC_009698.1 1080868 1082142 D hypothetical protein 1080868..1082142 Clostridium botulinum A str. Hall 5401092 YP_001386928.1 CDS CLC_1060 NC_009698.1 1082185 1082973 D identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 1082185..1082973 Clostridium botulinum A str. Hall 5399677 YP_001386929.1 CDS CLC_1061 NC_009698.1 1083005 1084207 D identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 1083005..1084207 Clostridium botulinum A str. Hall 5398360 YP_001386930.1 CDS CLC_1062 NC_009698.1 1084268 1085665 D identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase 1084268..1085665 Clostridium botulinum A str. Hall 5398743 YP_001386931.1 CDS CLC_1063 NC_009698.1 1085934 1086056 D identified by similarity to GB:CAK20204.1; hypothetical protein 1085934..1086056 Clostridium botulinum A str. Hall 5401802 YP_001386932.1 CDS CLC_1064 NC_009698.1 1086184 1087092 D lipoprotein 1086184..1087092 Clostridium botulinum A str. Hall 5399177 YP_001386933.1 CDS CLC_1065 NC_009698.1 1087288 1087758 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1087288..1087758 Clostridium botulinum A str. Hall 5401181 YP_001386934.1 CDS CLC_1066 NC_009698.1 1087760 1088305 D identified by match to protein family HMM PF04199; cyclase 1087760..1088305 Clostridium botulinum A str. Hall 5399716 YP_001386935.1 CDS CLC_1067 NC_009698.1 1088606 1089790 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1088606..1089790) Clostridium botulinum A str. Hall 5400282 YP_001386936.1 CDS CLC_1068 NC_009698.1 1090719 1091297 R identified by match to protein family HMM PF04199; cyclase complement(1090719..1091297) Clostridium botulinum A str. Hall 5399896 YP_001386937.1 CDS CLC_1069 NC_009698.1 1091456 1091980 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1091456..1091980 Clostridium botulinum A str. Hall 5398347 YP_001386938.1 CDS CLC_1070 NC_009698.1 1092283 1093104 D identified by match to protein family HMM PF00376; match to protein family HMM PF06445; MerR family transcriptional regulator 1092283..1093104 Clostridium botulinum A str. Hall 5399813 YP_001386939.1 CDS CLC_1071 NC_009698.1 1093319 1094017 D identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1093319..1094017 Clostridium botulinum A str. Hall 5400849 YP_001386940.1 CDS aspC NC_009698.1 1094282 1095571 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1094282..1095571) Clostridium botulinum A str. Hall 5399425 YP_001386941.1 CDS CLC_1073 NC_009698.1 1096116 1096496 D hypothetical protein 1096116..1096496 Clostridium botulinum A str. Hall 5399266 YP_001386942.1 CDS CLC_1074 NC_009698.1 1096656 1097270 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1096656..1097270 Clostridium botulinum A str. Hall 5401756 YP_001386943.1 CDS CLC_1075 NC_009698.1 1097286 1097774 D hypothetical protein 1097286..1097774 Clostridium botulinum A str. Hall 5400904 YP_001386944.1 CDS CLC_1076 NC_009698.1 1097881 1098570 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD family hydrolase complement(1097881..1098570) Clostridium botulinum A str. Hall 5400478 YP_001386945.1 CDS CLC_1077 NC_009698.1 1098881 1099570 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 1098881..1099570 Clostridium botulinum A str. Hall 5398836 YP_001386946.1 CDS CLC_1078 NC_009698.1 1099688 1100272 R identified by match to protein family HMM PF01965; DJ-1/PfpI family protein complement(1099688..1100272) Clostridium botulinum A str. Hall 5401822 YP_001386947.1 CDS CLC_1079 NC_009698.1 1100428 1101321 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1100428..1101321 Clostridium botulinum A str. Hall 5399665 YP_001386948.1 CDS CLC_1080 NC_009698.1 1101455 1102213 D hypothetical protein 1101455..1102213 Clostridium botulinum A str. Hall 5400304 YP_008472683.1 CDS FeoA NC_009698.1 1102758 1102976 D ferrous iron transport protein A 1102758..1102976 Clostridium botulinum A str. Hall 16691477 YP_008472684.1 CDS FeoA NC_009698.1 1102993 1103214 D ferrous iron transport protein A 1102993..1103214 Clostridium botulinum A str. Hall 16691478 YP_001386949.1 CDS feoB-2 NC_009698.1 1103246 1105402 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 1103246..1105402 Clostridium botulinum A str. Hall 5399590 YP_001386950.1 CDS CLC_1083 NC_009698.1 1105423 1105569 D identified by Glimmer3; hypothetical protein 1105423..1105569 Clostridium botulinum A str. Hall 5398890 YP_001386951.1 CDS CLC_1084 NC_009698.1 1105964 1106401 R identified by match to protein family HMM PF00583; acetyltransferase complement(1105964..1106401) Clostridium botulinum A str. Hall 5398625 YP_001386953.1 CDS CLC_1086 NC_009698.1 1106868 1107668 D identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 1106868..1107668 Clostridium botulinum A str. Hall 5398775 YP_001386954.1 CDS tlp NC_009698.1 1107967 1108194 D identified by match to protein family HMM TIGR03090; small acid-soluble spore protein Tlp 1107967..1108194 Clostridium botulinum A str. Hall 5401797 YP_001386955.1 CDS CLC_1088 NC_009698.1 1108412 1109098 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1108412..1109098 Clostridium botulinum A str. Hall 5398857 YP_001386956.1 CDS CLC_1089 NC_009698.1 1109099 1110454 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1109099..1110454 Clostridium botulinum A str. Hall 5398249 YP_001386957.1 CDS CLC_1090 NC_009698.1 1110989 1112248 D identified by match to protein family HMM PF00067; cytochrome P450 1110989..1112248 Clostridium botulinum A str. Hall 5399792 YP_001386958.1 CDS CLC_1091 NC_009698.1 1112388 1114196 R identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein complement(1112388..1114196) Clostridium botulinum A str. Hall 5399025 YP_001386959.1 CDS CLC_1092 NC_009698.1 1114733 1114969 D hypothetical protein 1114733..1114969 Clostridium botulinum A str. Hall 5399939 YP_001386960.1 CDS CLC_1093 NC_009698.1 1115239 1115940 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1115239..1115940 Clostridium botulinum A str. Hall 5399800 YP_001386961.1 CDS CLC_1094 NC_009698.1 1115940 1117346 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1115940..1117346 Clostridium botulinum A str. Hall 5399993 YP_001386962.1 CDS CLC_1095 NC_009698.1 1117686 1118372 R hypothetical protein complement(1117686..1118372) Clostridium botulinum A str. Hall 5398715 YP_001386963.1 CDS CLC_1096 NC_009698.1 1118608 1119366 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1118608..1119366) Clostridium botulinum A str. Hall 5401087 YP_001386964.1 CDS CLC_1097 NC_009698.1 1119612 1120565 D identified by match to protein family HMM PF01032; iron ABC transporter permease 1119612..1120565 Clostridium botulinum A str. Hall 5401004 YP_001386965.1 CDS CLC_1098 NC_009698.1 1120555 1121505 D identified by match to protein family HMM PF01032; iron ABC transporter permease 1120555..1121505 Clostridium botulinum A str. Hall 5399397 YP_001386966.1 CDS CLC_1099 NC_009698.1 1121502 1122257 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1121502..1122257 Clostridium botulinum A str. Hall 5400174 YP_001386967.1 CDS CLC_1100 NC_009698.1 1122331 1123275 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1122331..1123275 Clostridium botulinum A str. Hall 5400538 YP_001386968.1 CDS CLC_1101 NC_009698.1 1123477 1124478 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1123477..1124478 Clostridium botulinum A str. Hall 5400913 YP_001386969.1 CDS CLC_1102 NC_009698.1 1124993 1126795 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1124993..1126795 Clostridium botulinum A str. Hall 5398252 YP_001386970.1 CDS CLC_1103 NC_009698.1 1126797 1128512 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; ABC transport ATP-binding protein/permease 1126797..1128512 Clostridium botulinum A str. Hall 5400811 YP_001386971.1 CDS CLC_1104 NC_009698.1 1128717 1130090 R sensor histidine kinase complement(1128717..1130090) Clostridium botulinum A str. Hall 5400127 YP_001386972.1 CDS CLC_1105 NC_009698.1 1130093 1130800 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator complement(1130093..1130800) Clostridium botulinum A str. Hall 5400485 YP_001386973.1 CDS CLC_1106 NC_009698.1 1130888 1131763 R hypothetical protein complement(1130888..1131763) Clostridium botulinum A str. Hall 5399435 YP_001386974.1 CDS CLC_1107 NC_009698.1 1132002 1132433 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(1132002..1132433) Clostridium botulinum A str. Hall 5401825 YP_001386975.1 CDS CLC_1108 NC_009698.1 1132856 1136017 D identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451; BNR/Asp-box repeat-containing protein 1132856..1136017 Clostridium botulinum A str. Hall 5399726 YP_001386976.1 CDS CLC_1109 NC_009698.1 1136205 1137704 D identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839; extracellular exochitinase 1136205..1137704 Clostridium botulinum A str. Hall 5398816 YP_001386977.1 CDS CLC_1110 NC_009698.1 1137885 1138034 D identified by Glimmer3; hypothetical protein 1137885..1138034 Clostridium botulinum A str. Hall 5398826 YP_001386978.1 CDS CLC_1111 NC_009698.1 1138031 1140073 D identified by match to protein family HMM PF03190; hypothetical protein 1138031..1140073 Clostridium botulinum A str. Hall 5398676 YP_001386979.1 CDS CLC_1112 NC_009698.1 1140397 1141392 D identified by match to protein family HMM PF06081; hypothetical protein 1140397..1141392 Clostridium botulinum A str. Hall 5398794 YP_001386980.1 CDS CLC_1113 NC_009698.1 1141557 1142141 D hypothetical protein 1141557..1142141 Clostridium botulinum A str. Hall 5400145 YP_001386981.1 CDS CLC_1114 NC_009698.1 1142454 1143155 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(1142454..1143155) Clostridium botulinum A str. Hall 5399727 YP_001386982.1 CDS CLC_1115 NC_009698.1 1143271 1144077 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(1143271..1144077) Clostridium botulinum A str. Hall 5398813 YP_001386983.1 CDS CLC_1116 NC_009698.1 1144461 1146380 R identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein complement(1144461..1146380) Clostridium botulinum A str. Hall 5398306 YP_001386984.1 CDS CLC_1117 NC_009698.1 1147018 1148232 D identified by match to protein family HMM PF07670; hypothetical protein 1147018..1148232 Clostridium botulinum A str. Hall 5399119 YP_001386985.1 CDS CLC_1118 NC_009698.1 1148607 1148957 D identified by match to protein family HMM PF03960; ArsC family protein 1148607..1148957 Clostridium botulinum A str. Hall 5401461 YP_001386986.1 CDS CLC_1119 NC_009698.1 1149175 1150068 D radical SAM domain-containing protein 1149175..1150068 Clostridium botulinum A str. Hall 5399918 YP_001386987.1 CDS CLC_1120 NC_009698.1 1150276 1151694 D identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 1150276..1151694 Clostridium botulinum A str. Hall 5398379 YP_001386988.1 CDS CLC_1121 NC_009698.1 1151751 1153007 D identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1151751..1153007 Clostridium botulinum A str. Hall 5398460 YP_001386989.1 CDS CLC_1122 NC_009698.1 1153010 1153378 D identified by match to protein family HMM PF07892; hypothetical protein 1153010..1153378 Clostridium botulinum A str. Hall 5400750 YP_001386990.1 CDS glpT NC_009698.1 1153467 1154804 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 1153467..1154804 Clostridium botulinum A str. Hall 5400691 YP_001386991.1 CDS argS NC_009698.1 1155386 1157077 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1155386..1157077 Clostridium botulinum A str. Hall 5398521 YP_001386992.1 CDS CLC_1125 NC_009698.1 1157419 1157532 D identified by Glimmer3; hypothetical protein 1157419..1157532 Clostridium botulinum A str. Hall 5400569 YP_001386993.1 CDS CLC_1126 NC_009698.1 1157522 1158652 D associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 1157522..1158652 Clostridium botulinum A str. Hall 5400677 YP_001386994.1 CDS CLC_1127 NC_009698.1 1158791 1159171 D identified by match to protein family HMM PF00571; hypothetical protein 1158791..1159171 Clostridium botulinum A str. Hall 5399692 YP_001386995.1 CDS CLC_1128 NC_009698.1 1159379 1159537 R identified by Glimmer3; hypothetical protein complement(1159379..1159537) Clostridium botulinum A str. Hall 5398967 YP_001386996.1 CDS feoB-3 NC_009698.1 1159563 1161326 R identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B complement(1159563..1161326) Clostridium botulinum A str. Hall 5400519 YP_001386997.1 CDS feoA-2 NC_009698.1 1161341 1161562 R identified by match to protein family HMM PF04023; ferrous ion transport protein A complement(1161341..1161562) Clostridium botulinum A str. Hall 5400044 YP_001386998.1 CDS CLC_1131 NC_009698.1 1161888 1162283 D identified by match to protein family HMM PF07238; hypothetical protein 1161888..1162283 Clostridium botulinum A str. Hall 5401299 YP_001386999.1 CDS CLC_1132 NC_009698.1 1162496 1163221 D identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; haloacid dehalogenase 1162496..1163221 Clostridium botulinum A str. Hall 5398959 YP_001387001.1 CDS CLC_1134 NC_009698.1 1163665 1165257 D identified by match to protein family HMM PF02839; glycosyl hydrolase 1163665..1165257 Clostridium botulinum A str. Hall 5398450 YP_001387003.1 CDS CLC_1136 NC_009698.1 1166413 1167369 D identified by match to protein family HMM PF00005; methionine ABC transporter ATP-binding protein 1166413..1167369 Clostridium botulinum A str. Hall 5398545 YP_001387004.1 CDS CLC_1137 NC_009698.1 1167371 1168012 D identified by match to protein family HMM PF00528; methionine ABC transporter permease 1167371..1168012 Clostridium botulinum A str. Hall 5399308 YP_001387005.1 CDS CLC_1138 NC_009698.1 1168067 1168879 D identified by match to protein family HMM PF03180; NLPA family lipoprotein 1168067..1168879 Clostridium botulinum A str. Hall 5400160 YP_001387006.1 CDS CLC_1139 NC_009698.1 1169068 1169880 D identified by match to protein family HMM PF03180; NLPA family lipoprotein 1169068..1169880 Clostridium botulinum A str. Hall 5400139 YP_001387007.1 CDS CLC_1140 NC_009698.1 1170108 1171274 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1170108..1171274 Clostridium botulinum A str. Hall 5398408 YP_001387009.1 CDS CLC_1142 NC_009698.1 1171846 1172475 D hypothetical protein 1171846..1172475 Clostridium botulinum A str. Hall 5399519 YP_001387010.1 CDS CLC_1143 NC_009698.1 1172981 1173673 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1172981..1173673 Clostridium botulinum A str. Hall 5399088 YP_001387011.1 CDS CLC_1144 NC_009698.1 1173918 1174781 D identified by match to protein family HMM PF02588; hypothetical protein 1173918..1174781 Clostridium botulinum A str. Hall 5401596 YP_001387012.1 CDS CLC_1145 NC_009698.1 1174990 1175202 D hypothetical protein 1174990..1175202 Clostridium botulinum A str. Hall 5400281 YP_001387013.1 CDS gltX NC_009698.1 1175460 1176917 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1175460..1176917) Clostridium botulinum A str. Hall 5401372 YP_001387014.1 CDS gap-2 NC_009698.1 1177342 1178358 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 1177342..1178358 Clostridium botulinum A str. Hall 5400200 YP_001387015.1 CDS CLC_1148 NC_009698.1 1178603 1180111 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase complement(1178603..1180111) Clostridium botulinum A str. Hall 5400049 YP_001387016.1 CDS CLC_1149 NC_009698.1 1180477 1180626 D identified by Glimmer3; hypothetical protein 1180477..1180626 Clostridium botulinum A str. Hall 5399744 YP_001387017.1 CDS CLC_1150 NC_009698.1 1180769 1181413 D identified by match to protein family HMM PF01966; HD domain-containing protein 1180769..1181413 Clostridium botulinum A str. Hall 5401158 YP_001387018.1 CDS CLC_1151 NC_009698.1 1181469 1182839 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase 1181469..1182839 Clostridium botulinum A str. Hall 5399087 YP_001387019.1 CDS CLC_1152 NC_009698.1 1182922 1184319 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(1182922..1184319) Clostridium botulinum A str. Hall 5401230 YP_001387020.1 CDS CLC_1153 NC_009698.1 1184915 1186291 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(1184915..1186291) Clostridium botulinum A str. Hall 5400548 YP_001387021.1 CDS CLC_1154 NC_009698.1 1186729 1187166 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1186729..1187166 Clostridium botulinum A str. Hall 5399711 YP_001387022.1 CDS CLC_1155 NC_009698.1 1187184 1188551 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797; MATE efflux family protein 1187184..1188551 Clostridium botulinum A str. Hall 5398416 YP_001387023.1 CDS CLC_1156 NC_009698.1 1188970 1189515 D hypothetical protein 1188970..1189515 Clostridium botulinum A str. Hall 5399815 YP_001387024.1 CDS CLC_1157 NC_009698.1 1189614 1190591 D hypothetical protein 1189614..1190591 Clostridium botulinum A str. Hall 5398614 YP_001387025.1 CDS CLC_1158 NC_009698.1 1191398 1192636 D ABC transporter substrate-binding protein 1191398..1192636 Clostridium botulinum A str. Hall 5401079 YP_001387026.1 CDS CLC_1159 NC_009698.1 1192638 1193504 D identified by match to protein family HMM PF00528; ABC transporter permease 1192638..1193504 Clostridium botulinum A str. Hall 5398901 YP_001387027.1 CDS CLC_1160 NC_009698.1 1193527 1194333 D identified by match to protein family HMM PF00528; ABC transporter permease 1193527..1194333 Clostridium botulinum A str. Hall 5398961 YP_001387028.1 CDS CLC_1161 NC_009698.1 1194345 1195364 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1194345..1195364 Clostridium botulinum A str. Hall 5398578 YP_001387029.1 CDS CLC_1162 NC_009698.1 1195667 1196626 D hypothetical protein 1195667..1196626 Clostridium botulinum A str. Hall 5400106 YP_001387030.1 CDS CLC_1163 NC_009698.1 1196730 1197281 D identified by match to protein family HMM PF00583; acetyltransferase 1196730..1197281 Clostridium botulinum A str. Hall 5399219 YP_001387031.1 CDS CLC_1164 NC_009698.1 1197291 1197626 D hypothetical protein 1197291..1197626 Clostridium botulinum A str. Hall 5399629 YP_001387032.1 CDS CLC_1165 NC_009698.1 1197702 1197980 D identified by Glimmer3; hypothetical protein 1197702..1197980 Clostridium botulinum A str. Hall 5400910 YP_001387033.2 CDS CLC_1166 NC_009698.1 1197981 1198577 D identified by match to protein family HMM PF03956; hypothetical protein 1197981..1198577 Clostridium botulinum A str. Hall 5401565 YP_001387034.1 CDS maa NC_009698.1 1198865 1199419 D identified by match to protein family HMM PF00132; maltose transacetylase 1198865..1199419 Clostridium botulinum A str. Hall 5400104 YP_001387035.1 CDS birA NC_009698.1 1200479 1201462 R identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; birA bifunctional protein complement(1200479..1201462) Clostridium botulinum A str. Hall 5401523 YP_001387036.1 CDS CLC_1169 NC_009698.1 1201626 1201829 D heavy metal-binding protein 1201626..1201829 Clostridium botulinum A str. Hall 5401080 YP_001387037.1 CDS CLC_1170 NC_009698.1 1202104 1202541 D identified by match to protein family HMM PF00571; hypothetical protein 1202104..1202541 Clostridium botulinum A str. Hall 5398433 YP_001387038.1 CDS CLC_1171 NC_009698.1 1202701 1204134 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1202701..1204134 Clostridium botulinum A str. Hall 5400094 YP_001387039.1 CDS CLC_1172 NC_009698.1 1204246 1204371 R hypothetical protein complement(1204246..1204371) Clostridium botulinum A str. Hall 5401126 YP_001387040.1 CDS CLC_1173 NC_009698.1 1205000 1205779 D hypothetical protein 1205000..1205779 Clostridium botulinum A str. Hall 5400533 YP_001387041.1 CDS mgtE NC_009698.1 1206280 1207614 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1206280..1207614 Clostridium botulinum A str. Hall 5401146 YP_001387042.1 CDS CLC_1175 NC_009698.1 1208617 1209690 D identified by match to protein family HMM PF00266; class V aminotransferase 1208617..1209690 Clostridium botulinum A str. Hall 5401039 YP_001387043.1 CDS serA NC_009698.1 1209918 1210862 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-3-phosphoglycerate dehydrogenase 1209918..1210862 Clostridium botulinum A str. Hall 5401553 YP_001387044.1 CDS CLC_1177 NC_009698.1 1210840 1212162 D identified by match to protein family HMM PF06245; hypothetical protein 1210840..1212162 Clostridium botulinum A str. Hall 5398495 YP_001387045.1 CDS CLC_1178 NC_009698.1 1212762 1213952 D identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin domain-containing protein 1212762..1213952 Clostridium botulinum A str. Hall 5399947 YP_001387046.1 CDS CLC_1179 NC_009698.1 1214111 1218400 D identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 1214111..1218400 Clostridium botulinum A str. Hall 5399911 YP_001387047.1 CDS CLC_1180 NC_009698.1 1218474 1219988 R identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter complement(1218474..1219988) Clostridium botulinum A str. Hall 5398507 YP_001387048.1 CDS CLC_1181 NC_009698.1 1220347 1220973 D identified by match to protein family HMM PF00392; match to protein family HMM PF02080; GntR family transcriptional regulator 1220347..1220973 Clostridium botulinum A str. Hall 5401467 YP_001387049.1 CDS CLC_1182 NC_009698.1 1221084 1221584 D hypothetical protein 1221084..1221584 Clostridium botulinum A str. Hall 5401242 YP_001387050.1 CDS CLC_1183 NC_009698.1 1221883 1222443 D identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 1221883..1222443 Clostridium botulinum A str. Hall 5398665 YP_001387051.1 CDS CLC_1184 NC_009698.1 1222601 1222912 D identified by match to protein family HMM PF00581; phage shock protein 1222601..1222912 Clostridium botulinum A str. Hall 5400121 YP_001387052.1 CDS CLC_1185 NC_009698.1 1222988 1223452 D hypothetical protein 1222988..1223452 Clostridium botulinum A str. Hall 5398819 YP_001387053.1 CDS CLC_1186 NC_009698.1 1223729 1223929 D hypothetical protein 1223729..1223929 Clostridium botulinum A str. Hall 5401730 YP_001387054.1 CDS CLC_1187 NC_009698.1 1224106 1225017 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1224106..1225017 Clostridium botulinum A str. Hall 5399378 YP_001387055.1 CDS xpt-2 NC_009698.1 1225178 1225750 D Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1225178..1225750 Clostridium botulinum A str. Hall 5399899 YP_001387056.1 CDS CLC_1189 NC_009698.1 1226048 1226629 D hypothetical protein 1226048..1226629 Clostridium botulinum A str. Hall 5399721 YP_001387057.1 CDS CLC_1190 NC_009698.1 1226938 1228320 D identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 1226938..1228320 Clostridium botulinum A str. Hall 5401259 YP_001387058.1 CDS CLC_1191 NC_009698.1 1228516 1228938 D identified by Glimmer3; hypothetical protein 1228516..1228938 Clostridium botulinum A str. Hall 5400983 YP_001387059.1 CDS CLC_1192 NC_009698.1 1229288 1230388 D identified by match to protein family HMM PF01594; transporter 1229288..1230388 Clostridium botulinum A str. Hall 5401433 YP_001387060.1 CDS CLC_1193 NC_009698.1 1230568 1230897 D identified by match to protein family HMM PF03819; MazG family protein 1230568..1230897 Clostridium botulinum A str. Hall 5401386 YP_001387061.1 CDS CLC_1194 NC_009698.1 1231034 1232773 D hypothetical protein 1231034..1232773 Clostridium botulinum A str. Hall 5398284 YP_001387062.1 CDS CLC_1195 NC_009698.1 1233544 1233684 D identified by Glimmer3; hypothetical protein 1233544..1233684 Clostridium botulinum A str. Hall 5400152 YP_001387063.1 CDS CLC_1196 NC_009698.1 1233866 1235065 D identified by Glimmer3; hypothetical protein 1233866..1235065 Clostridium botulinum A str. Hall 5400471 YP_001387064.1 CDS CLC_1197 NC_009698.1 1235456 1236502 D identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 1235456..1236502 Clostridium botulinum A str. Hall 5399109 YP_001387065.1 CDS CLC_1198 NC_009698.1 1236504 1238192 D identified by match to protein family HMM PF00528; ABC transporter permease 1236504..1238192 Clostridium botulinum A str. Hall 5400212 YP_001387066.1 CDS CLC_1199 NC_009698.1 1238155 1239090 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1238155..1239090 Clostridium botulinum A str. Hall 5400745 YP_001387067.1 CDS CLC_1200 NC_009698.1 1239155 1239949 R hypothetical protein complement(1239155..1239949) Clostridium botulinum A str. Hall 5399905 YP_001387068.1 CDS CLC_1201 NC_009698.1 1240253 1241419 D hypothetical protein 1240253..1241419 Clostridium botulinum A str. Hall 5400189 YP_001387069.1 CDS rpsA NC_009698.1 1241818 1242981 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1241818..1242981 Clostridium botulinum A str. Hall 5400457 YP_001387070.1 CDS CLC_1203 NC_009698.1 1243164 1243583 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 1243164..1243583 Clostridium botulinum A str. Hall 5398781 YP_001387071.1 CDS CLC_1204 NC_009698.1 1243755 1244171 D hypothetical protein 1243755..1244171 Clostridium botulinum A str. Hall 5400805 YP_001387072.1 CDS CLC_1205 NC_009698.1 1245040 1246047 D identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 1245040..1246047 Clostridium botulinum A str. Hall 5400742 YP_001387073.1 CDS CLC_1206 NC_009698.1 1246047 1246952 D identified by match to protein family HMM PF02653; ABC transporter permease 1246047..1246952 Clostridium botulinum A str. Hall 5400408 YP_001387074.1 CDS CLC_1207 NC_009698.1 1246915 1247709 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1246915..1247709 Clostridium botulinum A str. Hall 5400832 YP_001387075.1 CDS CLC_1208 NC_009698.1 1248039 1248341 D identified by Glimmer3; hypothetical protein 1248039..1248341 Clostridium botulinum A str. Hall 5400358 YP_001387076.1 CDS asdA NC_009698.1 1248774 1250417 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1248774..1250417 Clostridium botulinum A str. Hall 5401539 YP_001387077.1 CDS CLC_1210 NC_009698.1 1250543 1251424 R identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449; hypothetical protein complement(1250543..1251424) Clostridium botulinum A str. Hall 5400661 YP_001387078.1 CDS CLC_1211 NC_009698.1 1252007 1253104 D identified by match to protein family HMM PF00294; match to protein family HMM PF08279; PfkB family kinase 1252007..1253104 Clostridium botulinum A str. Hall 5400585 YP_001387079.1 CDS CLC_1212 NC_009698.1 1253098 1254021 D identified by match to protein family HMM PF04227; indigoidine synthase A family protein 1253098..1254021 Clostridium botulinum A str. Hall 5401592 YP_001387080.1 CDS panE NC_009698.1 1254513 1255424 D identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 1254513..1255424 Clostridium botulinum A str. Hall 5398402 YP_001387081.1 CDS fchA NC_009698.1 1255727 1256359 D identified by match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 1255727..1256359 Clostridium botulinum A str. Hall 5398530 YP_001387082.1 CDS folD NC_009698.1 1256359 1257207 D identified by match to protein family HMM PF00763; match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase 1256359..1257207 Clostridium botulinum A str. Hall 5400489 YP_001387083.1 CDS CLC_1216 NC_009698.1 1257527 1258321 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 1257527..1258321 Clostridium botulinum A str. Hall 5398517 YP_001387084.1 CDS CLC_1217 NC_009698.1 1258548 1259054 R identified by match to protein family HMM PF00583; diamine N-acetyltransferase complement(1258548..1259054) Clostridium botulinum A str. Hall 5399754 YP_001387085.1 CDS CLC_1218 NC_009698.1 1259235 1259378 D identified by Glimmer3; hypothetical protein 1259235..1259378 Clostridium botulinum A str. Hall 5399438 YP_001387086.1 CDS CLC_1219 NC_009698.1 1259496 1260227 D hypothetical protein 1259496..1260227 Clostridium botulinum A str. Hall 5398504 YP_001387087.1 CDS CLC_1220 NC_009698.1 1260347 1261156 D identified by match to protein family HMM PF02535; ZIP family zinc transporter 1260347..1261156 Clostridium botulinum A str. Hall 5400828 YP_001387088.1 CDS CLC_1221 NC_009698.1 1261828 1262265 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 1261828..1262265 Clostridium botulinum A str. Hall 5398591 YP_001387089.1 CDS cysK-2 NC_009698.1 1262594 1263523 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1262594..1263523 Clostridium botulinum A str. Hall 5399684 YP_001387090.1 CDS CLC_1223 NC_009698.1 1263510 1264178 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1263510..1264178 Clostridium botulinum A str. Hall 5399825 YP_001387091.1 CDS CLC_1224 NC_009698.1 1264213 1265037 D identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 1264213..1265037 Clostridium botulinum A str. Hall 5401101 YP_001387092.1 CDS iscS-1 NC_009698.1 1265138 1266268 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfhydrase 1265138..1266268 Clostridium botulinum A str. Hall 5401824 YP_001387093.1 CDS CLC_1226 NC_009698.1 1266340 1267140 D identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268; hypothetical protein 1266340..1267140 Clostridium botulinum A str. Hall 5398418 YP_001387094.1 CDS CLC_1227 NC_009698.1 1267295 1267423 D identified by Glimmer3; hypothetical protein 1267295..1267423 Clostridium botulinum A str. Hall 5400419 YP_001387095.1 CDS mnmA NC_009698.1 1267539 1268609 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1267539..1268609 Clostridium botulinum A str. Hall 5399107 YP_001387096.1 CDS CLC_1229 NC_009698.1 1268949 1269668 D identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 1268949..1269668 Clostridium botulinum A str. Hall 5399487 YP_001387097.1 CDS CLC_1230 NC_009698.1 1269665 1271008 D identified by match to protein family HMM PF02518; sensor histidine kinase 1269665..1271008 Clostridium botulinum A str. Hall 5399916 YP_001387098.1 CDS bcrA NC_009698.1 1271381 1272304 D identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein BcrA 1271381..1272304 Clostridium botulinum A str. Hall 5399153 YP_001387099.1 CDS CLC_1232 NC_009698.1 1272297 1273037 D hypothetical protein 1272297..1273037 Clostridium botulinum A str. Hall 5400274 YP_001387100.1 CDS CLC_1233 NC_009698.1 1273640 1275526 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 1273640..1275526 Clostridium botulinum A str. Hall 5401679 YP_001387101.1 CDS CLC_1234 NC_009698.1 1275873 1276040 D hypothetical protein 1275873..1276040 Clostridium botulinum A str. Hall 5400203 YP_001387102.1 CDS CLC_1235 NC_009698.1 1276080 1279598 R identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin oxidoreductase complement(1276080..1279598) Clostridium botulinum A str. Hall 5400504 YP_001387103.1 CDS CLC_1236 NC_009698.1 1279901 1280521 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1279901..1280521 Clostridium botulinum A str. Hall 5398369 YP_001387104.1 CDS CLC_1237 NC_009698.1 1280527 1281774 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1280527..1281774 Clostridium botulinum A str. Hall 5400062 YP_001387105.1 CDS CLC_1238 NC_009698.1 1282075 1283550 D identified by match to protein family HMM PF02696; hypothetical protein 1282075..1283550 Clostridium botulinum A str. Hall 5399872 YP_001387106.1 CDS CLC_1239 NC_009698.1 1284061 1285794 D identified by match to protein family HMM PF01593; amine oxidase 1284061..1285794 Clostridium botulinum A str. Hall 5400633 YP_001387107.1 CDS CLC_1240 NC_009698.1 1285839 1286729 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1285839..1286729) Clostridium botulinum A str. Hall 5398557 YP_001387108.1 CDS CLC_1241 NC_009698.1 1286929 1287654 D hypothetical protein 1286929..1287654 Clostridium botulinum A str. Hall 5400544 YP_001387109.1 CDS CLC_1242 NC_009698.1 1287668 1288996 D identified by match to protein family HMM PF02055; O-glycosyl hydrolase, family protein 1287668..1288996 Clostridium botulinum A str. Hall 5398875 YP_001387110.1 CDS CLC_1243 NC_009698.1 1289060 1290001 D identified by match to protein family HMM PF00480; ROK family protein 1289060..1290001 Clostridium botulinum A str. Hall 5398964 YP_001387111.1 CDS CLC_1244 NC_009698.1 1290004 1291449 D identified by match to protein family HMM PF00232; glycosyl hydrolase 1290004..1291449 Clostridium botulinum A str. Hall 5399551 YP_001387112.1 CDS amyB NC_009698.1 1292120 1293748 D identified by match to protein family HMM PF00686; match to protein family HMM PF01373; beta-amylase 1292120..1293748 Clostridium botulinum A str. Hall 5398664 YP_001387113.1 CDS tyrS-1 NC_009698.1 1294517 1295719 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1294517..1295719 Clostridium botulinum A str. Hall 5400881 YP_001387114.1 CDS CLC_1247 NC_009698.1 1296006 1296377 D identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1296006..1296377 Clostridium botulinum A str. Hall 5399510 YP_001387115.1 CDS CLC_1248 NC_009698.1 1296370 1297242 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1296370..1297242 Clostridium botulinum A str. Hall 5398954 YP_001387116.1 CDS CLC_1249 NC_009698.1 1297243 1297989 D hypothetical protein 1297243..1297989 Clostridium botulinum A str. Hall 5399886 YP_001387117.1 CDS CLC_1250 NC_009698.1 1298123 1298491 R hypothetical protein complement(1298123..1298491) Clostridium botulinum A str. Hall 5400328 YP_001387118.1 CDS CLC_1251 NC_009698.1 1298838 1299755 D hypothetical protein 1298838..1299755 Clostridium botulinum A str. Hall 5398608 YP_001387119.1 CDS CLC_1252 NC_009698.1 1299944 1302655 D identified by Glimmer3; hypothetical protein 1299944..1302655 Clostridium botulinum A str. Hall 5400614 YP_001387120.1 CDS CLC_1253 NC_009698.1 1302733 1304247 D identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239; glycosyl hydrolase 1302733..1304247 Clostridium botulinum A str. Hall 5399736 YP_001387121.1 CDS CLC_1254 NC_009698.1 1304421 1305680 D identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1304421..1305680 Clostridium botulinum A str. Hall 5400058 YP_001387122.1 CDS sdhB NC_009698.1 1306080 1306754 D identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 1306080..1306754 Clostridium botulinum A str. Hall 5400752 YP_001387123.1 CDS sdhA NC_009698.1 1306767 1307657 D identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1306767..1307657 Clostridium botulinum A str. Hall 5401391 YP_001387124.1 CDS CLC_1258 NC_009698.1 1308081 1308290 D identified by Glimmer3; hypothetical protein 1308081..1308290 Clostridium botulinum A str. Hall 5401251 YP_001387125.1 CDS CLC_1259 NC_009698.1 1308449 1308592 R identified by Glimmer3; hypothetical protein complement(1308449..1308592) Clostridium botulinum A str. Hall 5401223 YP_001387126.1 CDS CLC_1260 NC_009698.1 1308864 1309448 D hypothetical protein 1308864..1309448 Clostridium botulinum A str. Hall 5401317 YP_001387127.1 CDS CLC_1261 NC_009698.1 1309470 1310438 R identified by match to protein family HMM PF01244; dipeptidase complement(1309470..1310438) Clostridium botulinum A str. Hall 5399065 YP_001387128.1 CDS CLC_1262 NC_009698.1 1310818 1311510 R identified by Glimmer3; hypothetical protein complement(1310818..1311510) Clostridium botulinum A str. Hall 5400315 YP_001387129.1 CDS CLC_1263 NC_009698.1 1311617 1312900 R identified by match to protein family HMM PF02687; ABC transporter permease complement(1311617..1312900) Clostridium botulinum A str. Hall 5398452 YP_001387130.1 CDS CLC_1264 NC_009698.1 1312902 1313717 R identified by Glimmer3; hypothetical protein complement(1312902..1313717) Clostridium botulinum A str. Hall 5399557 YP_001387131.1 CDS CLC_1265 NC_009698.1 1313754 1314428 R identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein complement(1313754..1314428) Clostridium botulinum A str. Hall 5399533 YP_001387132.1 CDS CLC_1266 NC_009698.1 1314601 1315449 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(1314601..1315449) Clostridium botulinum A str. Hall 5400521 YP_001387133.1 CDS CLC_1267 NC_009698.1 1315455 1316408 R identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease complement(1315455..1316408) Clostridium botulinum A str. Hall 5400416 YP_001387134.1 CDS CLC_1268 NC_009698.1 1316607 1318205 R identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein complement(1316607..1318205) Clostridium botulinum A str. Hall 5401475 YP_001387135.1 CDS CLC_1269 NC_009698.1 1318497 1318658 D hypothetical protein 1318497..1318658 Clostridium botulinum A str. Hall 5399255 YP_001387136.1 CDS cotJB NC_009698.1 1318692 1318964 D spore coat peptide assembly protein CotJB 1318692..1318964 Clostridium botulinum A str. Hall 5401525 YP_001387137.1 CDS cotJC NC_009698.1 1318995 1319567 D identified by match to protein family HMM PF05067; spore coat peptide assembly protein CotJC 1318995..1319567 Clostridium botulinum A str. Hall 5398909 YP_001387138.1 CDS CLC_1272 NC_009698.1 1319797 1320816 D hypothetical protein 1319797..1320816 Clostridium botulinum A str. Hall 5400702 YP_001387139.1 CDS CLC_1273 NC_009698.1 1320833 1321897 D hypothetical protein 1320833..1321897 Clostridium botulinum A str. Hall 5401049 YP_001387140.1 CDS CLC_1274 NC_009698.1 1322545 1323036 D identified by match to protein family HMM PF04525; hypothetical protein 1322545..1323036 Clostridium botulinum A str. Hall 5399895 YP_001387141.1 CDS CLC_1275 NC_009698.1 1323274 1323678 R identified by Glimmer3; hypothetical protein complement(1323274..1323678) Clostridium botulinum A str. Hall 5399387 YP_001387142.1 CDS dut NC_009698.1 1324025 1324651 D identified by match to protein family HMM PF00692; deoxyuridine 5'-triphosphate nucleotidohydrolase 1324025..1324651 Clostridium botulinum A str. Hall 5398454 YP_001387143.1 CDS CLC_1277 NC_009698.1 1324705 1324896 R identified by match to protein family HMM TIGR02861; small acid-soluble spore protein, H-type complement(1324705..1324896) Clostridium botulinum A str. Hall 5401583 YP_001387144.1 CDS CLC_1278 NC_009698.1 1325410 1326165 R hypothetical protein complement(1325410..1326165) Clostridium botulinum A str. Hall 5400566 YP_001387145.1 CDS CLC_1279 NC_009698.1 1326559 1326705 D identified by similarity to GB:ABK61158.1; hypothetical protein 1326559..1326705 Clostridium botulinum A str. Hall 5399921 YP_001387146.1 CDS CLC_1280 NC_009698.1 1326823 1327356 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein complement(1326823..1327356) Clostridium botulinum A str. Hall 5398468 YP_001387147.1 CDS CLC_1281 NC_009698.1 1327780 1328829 D transcriptional regulator 1327780..1328829 Clostridium botulinum A str. Hall 5400439 YP_001387149.1 CDS CLC_1283 NC_009698.1 1329263 1329850 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1329263..1329850 Clostridium botulinum A str. Hall 5399747 YP_001387150.1 CDS CLC_1284 NC_009698.1 1329884 1330096 R identified by Glimmer3; hypothetical protein complement(1329884..1330096) Clostridium botulinum A str. Hall 5399565 YP_001387151.1 CDS CLC_1285 NC_009698.1 1330146 1330367 D identified by Glimmer3; hypothetical protein 1330146..1330367 Clostridium botulinum A str. Hall 5401405 YP_001387152.1 CDS CLC_1286 NC_009698.1 1330379 1330612 D identified by Glimmer3; hypothetical protein 1330379..1330612 Clostridium botulinum A str. Hall 5399086 YP_001387153.1 CDS CLC_1287 NC_009698.1 1331118 1332554 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(1331118..1332554) Clostridium botulinum A str. Hall 5400059 YP_001387154.1 CDS CLC_1288 NC_009698.1 1333724 1334032 D identified by Glimmer3; hypothetical protein 1333724..1334032 Clostridium botulinum A str. Hall 5399602 YP_001387155.1 CDS CLC_1289 NC_009698.1 1334694 1334897 D identified by match to protein family HMM PF01381; DNA-binding protein 1334694..1334897 Clostridium botulinum A str. Hall 5401606 YP_001387156.1 CDS CLC_1290 NC_009698.1 1335777 1336034 D hypothetical protein 1335777..1336034 Clostridium botulinum A str. Hall 5398831 YP_001387157.1 CDS CLC_1291 NC_009698.1 1336318 1337064 D lipoprotein 1336318..1337064 Clostridium botulinum A str. Hall 5399749 YP_001387158.1 CDS CLC_1292 NC_009698.1 1337383 1337610 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; rubredoxin 1337383..1337610 Clostridium botulinum A str. Hall 5400885 YP_001387159.1 CDS CLC_1293 NC_009698.1 1337642 1339102 R identified by match to protein family HMM PF00171; glyceraldehyde-3-phosphate dehydrogenase complement(1337642..1339102) Clostridium botulinum A str. Hall 5401111 YP_001387160.1 CDS CLC_1294 NC_009698.1 1339142 1340083 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; thioredoxin reductase complement(1339142..1340083) Clostridium botulinum A str. Hall 5401561 YP_001387161.1 CDS grdX NC_009698.1 1340880 1341257 D GrdX protein 1340880..1341257 Clostridium botulinum A str. Hall 5401611 YP_001387162.1 CDS grdE NC_009698.1 1341348 1342634 D identified by match to protein family HMM PF09338; glycine reductase complex component B, alpha and beta subunits 1341348..1342634 Clostridium botulinum A str. Hall 5400604 YP_001387163.1 CDS grdB NC_009698.1 1342667 1343968 D Selenoprotein. identified by match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918; glycine reductase, selenoprotein B 1342667..1343968 Clostridium botulinum A str. Hall 5400083 YP_001387164.1 CDS trxB NC_009698.1 1344119 1345060 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1344119..1345060 Clostridium botulinum A str. Hall 5399076 YP_001387165.1 CDS CLC_1299 NC_009698.1 1345094 1345414 D identified by match to protein family HMM PF00085; thioredoxin family protein 1345094..1345414 Clostridium botulinum A str. Hall 5401187 YP_001387167.1 CDS grdC NC_009698.1 1346071 1347609 D identified by match to protein family HMM PF08545; glycine reductase complex component C subunit beta 1346071..1347609 Clostridium botulinum A str. Hall 5398544 YP_001387168.1 CDS grdD NC_009698.1 1347625 1348791 D identified by match to protein family HMM PF02504; glycine reductase complex component C subunit alpha 1347625..1348791 Clostridium botulinum A str. Hall 5400746 YP_001387169.1 CDS CLC_1303 NC_009698.1 1349218 1349829 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1349218..1349829 Clostridium botulinum A str. Hall 5401709 YP_001387170.1 CDS CLC_1304 NC_009698.1 1349895 1352120 D identified by match to protein family HMM PF07669; restriction endonuclease 1349895..1352120 Clostridium botulinum A str. Hall 5399024 YP_001387171.1 CDS mtnK NC_009698.1 1352556 1353767 D phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1352556..1353767 Clostridium botulinum A str. Hall 5398814 YP_001387172.1 CDS mtnA NC_009698.1 1353907 1354956 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1353907..1354956 Clostridium botulinum A str. Hall 5400433 YP_001387173.1 CDS CLC_1307 NC_009698.1 1354980 1355090 D identified by Glimmer3; hypothetical protein 1354980..1355090 Clostridium botulinum A str. Hall 5401398 YP_001387174.1 CDS CLC_1308 NC_009698.1 1355107 1355754 D identified by match to protein family HMM PF00596; aldolase 1355107..1355754 Clostridium botulinum A str. Hall 5398911 YP_001387175.1 CDS CLC_1309 NC_009698.1 1355798 1355938 D identified by Glimmer3; hypothetical protein 1355798..1355938 Clostridium botulinum A str. Hall 5398343 YP_001387176.1 CDS CLC_1310 NC_009698.1 1355928 1356722 D identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1355928..1356722 Clostridium botulinum A str. Hall 5399647 YP_001387177.1 CDS CLC_1311 NC_009698.1 1357029 1357388 D hypothetical protein 1357029..1357388 Clostridium botulinum A str. Hall 5398413 YP_001387178.1 CDS CLC_1312 NC_009698.1 1357742 1358617 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein complement(1357742..1358617) Clostridium botulinum A str. Hall 5400567 YP_001387179.1 CDS CLC_1313 NC_009698.1 1358865 1359593 D identified by match to protein family HMM PF04239; hypothetical protein 1358865..1359593 Clostridium botulinum A str. Hall 5399463 YP_001387180.1 CDS CLC_1314 NC_009698.1 1359755 1360120 D hypothetical protein 1359755..1360120 Clostridium botulinum A str. Hall 5398334 YP_001387181.1 CDS CLC_1315 NC_009698.1 1360262 1360600 D hypothetical protein 1360262..1360600 Clostridium botulinum A str. Hall 5401641 YP_001387182.1 CDS CLC_1316 NC_009698.1 1360597 1361070 D hypothetical protein 1360597..1361070 Clostridium botulinum A str. Hall 5400615 YP_001387183.1 CDS CLC_1317 NC_009698.1 1361453 1361818 D identified by similarity to GB:AAZ70622.1; hypothetical protein 1361453..1361818 Clostridium botulinum A str. Hall 5401648 YP_001387184.1 CDS CLC_1318 NC_009698.1 1361887 1362594 D hypothetical protein 1361887..1362594 Clostridium botulinum A str. Hall 5399335 YP_001387185.1 CDS CLC_1319 NC_009698.1 1362665 1362835 R identified by Glimmer3; hypothetical protein complement(1362665..1362835) Clostridium botulinum A str. Hall 5400934 YP_001387186.1 CDS CLC_1320 NC_009698.1 1363216 1363449 R identified by Glimmer3; hypothetical protein complement(1363216..1363449) Clostridium botulinum A str. Hall 5398711 YP_001387187.1 CDS CLC_1321 NC_009698.1 1364637 1364933 D hypothetical protein 1364637..1364933 Clostridium botulinum A str. Hall 5399028 YP_001387188.1 CDS CLC_1322 NC_009698.1 1364961 1365257 D hypothetical protein 1364961..1365257 Clostridium botulinum A str. Hall 5400984 YP_001387189.1 CDS CLC_1323 NC_009698.1 1365314 1367611 D molybdenum cofactor-binding protein; participates in purine salvage; xanthine dehydrogenase subunit XdhA 1365314..1367611 Clostridium botulinum A str. Hall 5398309 YP_001387190.1 CDS CLC_1324 NC_009698.1 1367625 1368509 D FAD-binding subunit; with XdhA and XdhC participates in purine salvage; xanthine dehydrogenase subunit XdhB 1367625..1368509 Clostridium botulinum A str. Hall 5400327 YP_001387191.1 CDS CLC_1325 NC_009698.1 1368541 1369014 D identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur binding subunit 1368541..1369014 Clostridium botulinum A str. Hall 5401027 YP_001387192.1 CDS CLC_1326 NC_009698.1 1369130 1369603 D identified by match to protein family HMM PF00383; guanine deaminase 1369130..1369603 Clostridium botulinum A str. Hall 5398274 YP_001387193.1 CDS topB NC_009698.1 1369993 1372188 D decatenates replicating daughter chromosomes; DNA topoisomerase III 1369993..1372188 Clostridium botulinum A str. Hall 5400268 YP_001387194.1 CDS CLC_1328 NC_009698.1 1372500 1373105 D identified by match to protein family HMM PF02659; hypothetical protein 1372500..1373105 Clostridium botulinum A str. Hall 5398570 YP_001387195.1 CDS CLC_1329 NC_009698.1 1373171 1373407 D hypothetical protein 1373171..1373407 Clostridium botulinum A str. Hall 5398299 YP_001387197.1 CDS CLC_1331 NC_009698.1 1374134 1374787 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1374134..1374787 Clostridium botulinum A str. Hall 5398801 YP_001387198.1 CDS CLC_1332 NC_009698.1 1375186 1376850 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolising metallo-beta-lactamase 1375186..1376850 Clostridium botulinum A str. Hall 5398540 YP_001387199.1 CDS CLC_1333 NC_009698.1 1377155 1378507 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1377155..1378507 Clostridium botulinum A str. Hall 5400029 YP_001387200.1 CDS CLC_1334 NC_009698.1 1378822 1379667 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1378822..1379667 Clostridium botulinum A str. Hall 5399545 YP_001387201.1 CDS CLC_1335 NC_009698.1 1379687 1381312 D STE-like transcription factor domain-containing protein 1379687..1381312 Clostridium botulinum A str. Hall 5399051 YP_001387202.1 CDS CLC_1336 NC_009698.1 1381318 1382580 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1381318..1382580 Clostridium botulinum A str. Hall 5400406 YP_001387203.1 CDS CLC_1337 NC_009698.1 1382861 1384957 D cellulose synthase domain-containing protein 1382861..1384957 Clostridium botulinum A str. Hall 5400558 YP_001387204.1 CDS CLC_1338 NC_009698.1 1385374 1386468 D hypothetical protein 1385374..1386468 Clostridium botulinum A str. Hall 5398759 YP_001387205.1 CDS CLC_1339 NC_009698.1 1386696 1386860 D hypothetical protein 1386696..1386860 Clostridium botulinum A str. Hall 5401043 YP_001387206.1 CDS CLC_1340 NC_009698.1 1387195 1387998 D hypothetical protein 1387195..1387998 Clostridium botulinum A str. Hall 5400542 YP_001387207.1 CDS CLC_1341 NC_009698.1 1388274 1388540 D identified by match to protein family HMM PF02583; hypothetical protein 1388274..1388540 Clostridium botulinum A str. Hall 5400205 YP_001387208.1 CDS CLC_1342 NC_009698.1 1388577 1391012 D identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1388577..1391012 Clostridium botulinum A str. Hall 5401594 YP_001387209.1 CDS copZ NC_009698.1 1391135 1391350 D identified by match to protein family HMM PF00403; copper chaperone CopZ 1391135..1391350 Clostridium botulinum A str. Hall 5401267 YP_001387210.1 CDS CLC_1344 NC_009698.1 1391732 1394104 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type 1391732..1394104 Clostridium botulinum A str. Hall 5400395 YP_001387211.1 CDS CLC_1345 NC_009698.1 1394582 1396300 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1394582..1396300 Clostridium botulinum A str. Hall 5398983 YP_001387212.1 CDS CLC_1346 NC_009698.1 1396638 1397432 D identified by match to protein family HMM PF02517; CAAX amino terminal protease 1396638..1397432 Clostridium botulinum A str. Hall 5400298 YP_001387213.1 CDS CLC_1347 NC_009698.1 1397596 1397952 D identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor family protein 1397596..1397952 Clostridium botulinum A str. Hall 5399594 YP_001387214.1 CDS CLC_1348 NC_009698.1 1398371 1399264 D identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 1398371..1399264 Clostridium botulinum A str. Hall 5398651 YP_001387215.1 CDS CLC_1349 NC_009698.1 1399301 1399765 R identified by match to protein family HMM PF01243; 5-nitroimidazole antibiotic resistance protein complement(1399301..1399765) Clostridium botulinum A str. Hall 5398322 YP_001387216.1 CDS CLC_1350 NC_009698.1 1400078 1400305 D identified by similarity to SP:Q8K9S1; hypothetical protein 1400078..1400305 Clostridium botulinum A str. Hall 5399801 YP_001387217.1 CDS CLC_1351 NC_009698.1 1400330 1400758 D identified by match to protein family HMM PF01230; HIT family protein 1400330..1400758 Clostridium botulinum A str. Hall 5399281 YP_001387218.1 CDS CLC_1352 NC_009698.1 1400914 1401288 R hypothetical protein complement(1400914..1401288) Clostridium botulinum A str. Hall 5399950 YP_001387219.1 CDS CLC_1353 NC_009698.1 1401581 1402348 D identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type IV leader peptidase 1401581..1402348 Clostridium botulinum A str. Hall 5399618 YP_001387220.1 CDS CLC_1354 NC_009698.1 1402940 1404067 D identified by match to protein family HMM PF07907; hypothetical protein 1402940..1404067 Clostridium botulinum A str. Hall 5400967 YP_001387221.1 CDS trkH NC_009698.1 1406218 1407663 D identified by match to protein family HMM PF02386; Trk system potassium uptake protein TrkH 1406218..1407663 Clostridium botulinum A str. Hall 5398907 YP_001387222.1 CDS CLC_1357 NC_009698.1 1408122 1408256 D identified by Glimmer3; hypothetical protein 1408122..1408256 Clostridium botulinum A str. Hall 5400077 YP_001387223.1 CDS CLC_1358 NC_009698.1 1408237 1410804 D identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573; helicase, UvrD/REP/exonuclease 1408237..1410804 Clostridium botulinum A str. Hall 5399999 YP_001387224.1 CDS CLC_1359 NC_009698.1 1412107 1413237 R identified by match to protein family HMM PF07853; hypothetical protein complement(1412107..1413237) Clostridium botulinum A str. Hall 5400588 YP_001387225.1 CDS CLC_1360 NC_009698.1 1413252 1413626 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(1413252..1413626) Clostridium botulinum A str. Hall 5401585 YP_001387226.1 CDS CLC_1361 NC_009698.1 1413968 1414747 R identified by match to protein family HMM PF01476; match to protein family HMM PF07486; cell wall hydrolase complement(1413968..1414747) Clostridium botulinum A str. Hall 5398436 YP_001387227.1 CDS rbr NC_009698.1 1415506 1416093 D identified by match to protein family HMM PF02915; rubrerythrin 1415506..1416093 Clostridium botulinum A str. Hall 5401001 YP_001387228.1 CDS CLC_1363 NC_009698.1 1416388 1417842 D identified by match to protein family HMM PF04122; amidase 1416388..1417842 Clostridium botulinum A str. Hall 5399273 YP_001387229.1 CDS ptsG NC_009698.1 1418015 1420045 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system glucose-specific transporter subunit IIABC complement(1418015..1420045) Clostridium botulinum A str. Hall 5400971 YP_001387230.1 CDS CLC_1365 NC_009698.1 1420497 1421144 D identified by match to protein family HMM PF01255; undecaprenyl pyrophosphate synthetase-like protein 1420497..1421144 Clostridium botulinum A str. Hall 5400582 YP_001387232.1 CDS CLC_1367 NC_009698.1 1421531 1422040 D identified by Glimmer3; hypothetical protein 1421531..1422040 Clostridium botulinum A str. Hall 5400427 YP_001387233.1 CDS CLC_1368 NC_009698.1 1422335 1422748 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; transcriptional regulator 1422335..1422748 Clostridium botulinum A str. Hall 5401642 YP_001387234.1 CDS CLC_1369 NC_009698.1 1422957 1424843 D identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon monoxide dehydrogenase 1422957..1424843 Clostridium botulinum A str. Hall 5400655 YP_001387235.1 CDS CLC_1370 NC_009698.1 1424990 1425433 D identified by match to protein family HMM PF00037; nitrate reductase, iron-sulfur subunit 1424990..1425433 Clostridium botulinum A str. Hall 5401799 YP_001387236.1 CDS noxA NC_009698.1 1425632 1426858 D identified by match to protein family HMM PF00070; match to protein family HMM PF07992; nitrate reductase, NADH oxidase subunit 1425632..1426858 Clostridium botulinum A str. Hall 5400709 YP_001387237.1 CDS CLC_1372 NC_009698.1 1426900 1427880 R identified by match to protein family HMM PF00892; match to protein family HMM PF03151; transporter complement(1426900..1427880) Clostridium botulinum A str. Hall 5400163 YP_001387238.1 CDS CLC_1373 NC_009698.1 1428262 1428948 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator complement(1428262..1428948) Clostridium botulinum A str. Hall 5399166 YP_001387239.1 CDS CLC_1374 NC_009698.1 1429065 1430264 D identified by match to protein family HMM PF07690; major facilitator superfamily protein 1429065..1430264 Clostridium botulinum A str. Hall 5398881 YP_001387240.1 CDS CLC_1375 NC_009698.1 1430567 1431481 D identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1430567..1431481 Clostridium botulinum A str. Hall 5399822 YP_001387241.1 CDS CLC_1376 NC_009698.1 1431503 1432501 D identified by match to protein family HMM PF01032; iron ABC transporter permease 1431503..1432501 Clostridium botulinum A str. Hall 5399951 YP_001387242.1 CDS CLC_1377 NC_009698.1 1432504 1433265 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1432504..1433265 Clostridium botulinum A str. Hall 5399753 YP_001387243.1 CDS CLC_1378 NC_009698.1 1433486 1433821 R hypothetical protein complement(1433486..1433821) Clostridium botulinum A str. Hall 5400868 YP_001387244.1 CDS CLC_1379 NC_009698.1 1433896 1435173 R identified by match to protein family HMM PF00037; (Fe-S)-binding protein complement(1433896..1435173) Clostridium botulinum A str. Hall 5401513 YP_001387246.1 CDS murQ NC_009698.1 1436704 1437612 D catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 1436704..1437612 Clostridium botulinum A str. Hall 5400334 YP_001387247.1 CDS CLC_1382 NC_009698.1 1437725 1439080 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit IIBC 1437725..1439080 Clostridium botulinum A str. Hall 5398419 YP_001387248.1 CDS CLC_1383 NC_009698.1 1439504 1440580 D identified by match to protein family HMM PF05913; hypothetical protein 1439504..1440580 Clostridium botulinum A str. Hall 5400912 YP_001387249.1 CDS CLC_1384 NC_009698.1 1440912 1441520 D identified by match to protein family HMM PF06475; hypothetical protein 1440912..1441520 Clostridium botulinum A str. Hall 5401601 YP_001387250.1 CDS CLC_1385 NC_009698.1 1441803 1442444 D identified by match to protein family HMM PF06555; hypothetical protein 1441803..1442444 Clostridium botulinum A str. Hall 5399814 YP_001387251.1 CDS CLC_1386 NC_009698.1 1442750 1444621 D hypothetical protein 1442750..1444621 Clostridium botulinum A str. Hall 5401106 YP_001387252.1 CDS CLC_1387 NC_009698.1 1444674 1445912 D cell-surface protein 1444674..1445912 Clostridium botulinum A str. Hall 5398873 YP_001387253.1 CDS CLC_1388 NC_009698.1 1445912 1446454 D identified by Glimmer3; hypothetical protein 1445912..1446454 Clostridium botulinum A str. Hall 5401774 YP_001387254.1 CDS CLC_1389 NC_009698.1 1446624 1446896 R hypothetical protein complement(1446624..1446896) Clostridium botulinum A str. Hall 5401064 YP_001387255.1 CDS CLC_1390 NC_009698.1 1447400 1449118 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1447400..1449118 Clostridium botulinum A str. Hall 5398542 YP_001387256.1 CDS CLC_1391 NC_009698.1 1449576 1451165 D identified by match to protein family HMM PF00496; peptide/opine/nickel uptake ABC transporter substrate-binding protein 1449576..1451165 Clostridium botulinum A str. Hall 5400592 YP_001387257.1 CDS CLC_1392 NC_009698.1 1451162 1452118 D identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1451162..1452118 Clostridium botulinum A str. Hall 5399833 YP_001387258.1 CDS CLC_1393 NC_009698.1 1452127 1452927 D identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1452127..1452927 Clostridium botulinum A str. Hall 5399034 YP_001387259.1 CDS CLC_1394 NC_009698.1 1453026 1453820 D identified by match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 1453026..1453820 Clostridium botulinum A str. Hall 5400369 YP_001387260.1 CDS CLC_1395 NC_009698.1 1453814 1454626 D identified by match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 1453814..1454626 Clostridium botulinum A str. Hall 5400144 YP_001387261.1 CDS CLC_1396 NC_009698.1 1455070 1455582 D lipoprotein 1455070..1455582 Clostridium botulinum A str. Hall 5399537 YP_001387262.1 CDS CLC_1397 NC_009698.1 1455875 1456663 R identified by match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease complement(1455875..1456663) Clostridium botulinum A str. Hall 5400276 YP_001387263.1 CDS CLC_1398 NC_009698.1 1456663 1457316 R identified by match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein complement(1456663..1457316) Clostridium botulinum A str. Hall 5399893 YP_001387264.1 CDS CLC_1399 NC_009698.1 1457537 1458475 D identified by match to protein family HMM PF01297; manganese/zinc/iron chelate ABC transporter substrate-binding protein 1457537..1458475 Clostridium botulinum A str. Hall 5401285 YP_001387265.1 CDS CLC_1400 NC_009698.1 1458589 1459080 R hypothetical protein complement(1458589..1459080) Clostridium botulinum A str. Hall 5400581 YP_001387266.1 CDS CLC_1401 NC_009698.1 1459683 1461449 D identified by match to protein family HMM PF00271; helicase 1459683..1461449 Clostridium botulinum A str. Hall 5399917 YP_001387267.1 CDS CLC_1402 NC_009698.1 1461584 1462132 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1461584..1462132 Clostridium botulinum A str. Hall 5400563 YP_001387269.2 CDS CLC_1404 NC_009698.1 1463106 1464053 D hypothetical protein 1463106..1464053 Clostridium botulinum A str. Hall 5400636 YP_001387270.1 CDS CLC_1405 NC_009698.1 1464025 1464786 D identified by match to protein family HMM PF00528; ABC transporter permease 1464025..1464786 Clostridium botulinum A str. Hall 5401305 YP_001387271.1 CDS CLC_1406 NC_009698.1 1464927 1465526 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1464927..1465526 Clostridium botulinum A str. Hall 5400650 YP_001387272.1 CDS CLC_1407 NC_009698.1 1465805 1466278 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1465805..1466278 Clostridium botulinum A str. Hall 5400360 YP_001387273.1 CDS CLC_1408 NC_009698.1 1466248 1466721 D identified by match to protein family HMM PF02001; hypothetical protein 1466248..1466721 Clostridium botulinum A str. Hall 5401838 YP_001387274.1 CDS CLC_1409 NC_009698.1 1466848 1468119 D identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476; zinc carboxypeptidase 1466848..1468119 Clostridium botulinum A str. Hall 5401469 YP_001387276.1 CDS rnz NC_009698.1 1468409 1469449 D member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1468409..1469449 Clostridium botulinum A str. Hall 5399579 YP_001387277.1 CDS CLC_1412 NC_009698.1 1469795 1471114 D identified by match to protein family HMM PF00324; amino acid permease 1469795..1471114 Clostridium botulinum A str. Hall 5398339 YP_001387278.1 CDS CLC_1413 NC_009698.1 1471259 1471636 D identified by match to protein family HMM PF08000; hypothetical protein 1471259..1471636 Clostridium botulinum A str. Hall 5400164 YP_001387279.1 CDS CLC_1414 NC_009698.1 1471649 1472806 D identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase 1471649..1472806 Clostridium botulinum A str. Hall 5400682 YP_001387280.1 CDS CLC_1415 NC_009698.1 1472989 1473642 D identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 1472989..1473642 Clostridium botulinum A str. Hall 5399659 YP_001387281.1 CDS CLC_1416 NC_009698.1 1473993 1474931 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1473993..1474931 Clostridium botulinum A str. Hall 5400722 YP_001387282.1 CDS CLC_1417 NC_009698.1 1475037 1476215 D ABC transporter permease 1475037..1476215 Clostridium botulinum A str. Hall 5401695 YP_001387283.1 CDS CLC_1418 NC_009698.1 1476217 1477317 D identified by match to protein family HMM PF01061; hypothetical protein 1476217..1477317 Clostridium botulinum A str. Hall 5399309 YP_001387284.1 CDS CLC_1419 NC_009698.1 1477336 1477554 D identified by Glimmer3; hypothetical protein 1477336..1477554 Clostridium botulinum A str. Hall 5398536 YP_001387285.1 CDS CLC_1420 NC_009698.1 1478245 1478796 R identified by match to protein family HMM PF00881; nitroreductase complement(1478245..1478796) Clostridium botulinum A str. Hall 5401809 YP_001387286.1 CDS CLC_1421 NC_009698.1 1479354 1479845 R hypothetical protein complement(1479354..1479845) Clostridium botulinum A str. Hall 5398710 YP_001387287.1 CDS CLC_1422 NC_009698.1 1480013 1480216 R identified by match to protein family HMM PF00313; major cold shock protein complement(1480013..1480216) Clostridium botulinum A str. Hall 5401013 YP_001387288.1 CDS pepD-1 NC_009698.1 1480483 1481946 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 1480483..1481946 Clostridium botulinum A str. Hall 5400081 YP_001387291.1 CDS pdxK NC_009698.1 1483294 1484130 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1483294..1484130 Clostridium botulinum A str. Hall 5400535 YP_001387292.1 CDS CLC_1427 NC_009698.1 1484418 1485056 R identified by match to protein family HMM PF01625; methionine-S-sulfoxide reductase complement(1484418..1485056) Clostridium botulinum A str. Hall 5399318 YP_001387293.1 CDS CLC_1428 NC_009698.1 1485606 1486370 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1485606..1486370 Clostridium botulinum A str. Hall 5401618 YP_001387294.1 CDS CLC_1429 NC_009698.1 1486357 1488246 D identified by match to protein family HMM PF02687; peptide ABC transporter permease 1486357..1488246 Clostridium botulinum A str. Hall 5399943 YP_001387295.1 CDS CLC_1430 NC_009698.1 1488419 1488916 D hypothetical protein 1488419..1488916 Clostridium botulinum A str. Hall 5400320 YP_001387296.1 CDS CLC_1431 NC_009698.1 1489356 1490057 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1489356..1490057 Clostridium botulinum A str. Hall 5399761 YP_001387297.1 CDS CLC_1432 NC_009698.1 1490059 1491036 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1490059..1491036 Clostridium botulinum A str. Hall 5401110 YP_001387298.1 CDS CLC_1433 NC_009698.1 1491095 1491850 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1491095..1491850 Clostridium botulinum A str. Hall 5401094 YP_001387299.1 CDS CLC_1434 NC_009698.1 1491840 1493648 D peptide ABC transporter permease 1491840..1493648 Clostridium botulinum A str. Hall 5401493 YP_001387300.1 CDS CLC_1435 NC_009698.1 1493717 1494439 D hypothetical protein 1493717..1494439 Clostridium botulinum A str. Hall 5399417 YP_001387301.1 CDS CLC_1436 NC_009698.1 1494818 1495819 D hypothetical protein 1494818..1495819 Clostridium botulinum A str. Hall 5400043 YP_001387302.1 CDS CLC_1437 NC_009698.1 1496203 1497381 D identified by match to protein family HMM PF00155; aminotransferase, classes I and II 1496203..1497381 Clostridium botulinum A str. Hall 5399050 YP_001387303.1 CDS CLC_1438 NC_009698.1 1497469 1498134 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1497469..1498134 Clostridium botulinum A str. Hall 5400496 YP_001387304.1 CDS CLC_1439 NC_009698.1 1498153 1498890 D identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 1498153..1498890 Clostridium botulinum A str. Hall 5399846 YP_001387305.1 CDS CLC_1440 NC_009698.1 1499315 1499533 D identified by match to protein family HMM PF01381; DNA-binding protein 1499315..1499533 Clostridium botulinum A str. Hall 5400749 YP_001387306.1 CDS CLC_1441 NC_009698.1 1499732 1501006 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(1499732..1501006) Clostridium botulinum A str. Hall 5399276 YP_001387307.1 CDS CLC_1442 NC_009698.1 1501305 1501928 D identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1501305..1501928 Clostridium botulinum A str. Hall 5398447 YP_001387308.1 CDS CLC_1443 NC_009698.1 1501979 1502326 R hypothetical protein complement(1501979..1502326) Clostridium botulinum A str. Hall 5400364 YP_001387309.1 CDS CLC_1444 NC_009698.1 1502662 1503825 D identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1502662..1503825 Clostridium botulinum A str. Hall 5401480 YP_001387310.1 CDS CLC_1445 NC_009698.1 1504209 1504433 D identified by Glimmer3; hypothetical protein 1504209..1504433 Clostridium botulinum A str. Hall 5401672 YP_001387311.1 CDS CLC_1446 NC_009698.1 1504606 1506126 D identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; C4-dicarboxylate transporter 1504606..1506126 Clostridium botulinum A str. Hall 5399150 YP_001387312.1 CDS CLC_1447 NC_009698.1 1506265 1507746 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1506265..1507746) Clostridium botulinum A str. Hall 5398723 YP_001387313.1 CDS CLC_1448 NC_009698.1 1508203 1509009 D identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 1508203..1509009 Clostridium botulinum A str. Hall 5400345 YP_001387314.1 CDS CLC_1449 NC_009698.1 1509011 1509670 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1509011..1509670 Clostridium botulinum A str. Hall 5398738 YP_001387315.1 CDS CLC_1450 NC_009698.1 1509801 1510349 D hypothetical protein 1509801..1510349 Clostridium botulinum A str. Hall 5401731 YP_001387316.1 CDS CLC_1451 NC_009698.1 1510444 1512456 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 1510444..1512456 Clostridium botulinum A str. Hall 5401444 YP_001387317.1 CDS CLC_1452 NC_009698.1 1512844 1513227 D hypothetical protein 1512844..1513227 Clostridium botulinum A str. Hall 5401209 YP_001387318.1 CDS CLC_1453 NC_009698.1 1513233 1513583 D hypothetical protein 1513233..1513583 Clostridium botulinum A str. Hall 5398980 YP_001387319.1 CDS CLC_1454 NC_009698.1 1513715 1513873 D identified by Glimmer3; hypothetical protein 1513715..1513873 Clostridium botulinum A str. Hall 5399473 YP_001387320.1 CDS CLC_1455 NC_009698.1 1513983 1514390 D identified by match to protein family HMM PF00583; acetyltransferase 1513983..1514390 Clostridium botulinum A str. Hall 5398358 YP_001387321.1 CDS CLC_1456 NC_009698.1 1514552 1515031 D identified by Glimmer3; hypothetical protein 1514552..1515031 Clostridium botulinum A str. Hall 5399575 YP_001387322.1 CDS CLC_1457 NC_009698.1 1515123 1515278 D identified by Glimmer3; hypothetical protein 1515123..1515278 Clostridium botulinum A str. Hall 5398595 YP_001387323.1 CDS CLC_1458 NC_009698.1 1515554 1515748 D identified by Glimmer3; hypothetical protein 1515554..1515748 Clostridium botulinum A str. Hall 5400556 YP_001387324.1 CDS uviB NC_009698.1 1515972 1516175 D bacteriocin UviB 1515972..1516175 Clostridium botulinum A str. Hall 5398984 YP_001387325.1 CDS CLC_1460 NC_009698.1 1516168 1516350 D hypothetical protein 1516168..1516350 Clostridium botulinum A str. Hall 5400237 YP_001387326.1 CDS CLC_1461 NC_009698.1 1516350 1517177 D identified by match to protein family HMM PF01471; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1516350..1517177 Clostridium botulinum A str. Hall 5399697 YP_001387327.1 CDS CLC_1462 NC_009698.1 1517545 1517763 D hypothetical protein 1517545..1517763 Clostridium botulinum A str. Hall 5400131 YP_001387328.1 CDS CLC_1463 NC_009698.1 1517765 1518070 D identified by match to protein family HMM PF07875; spore coat protein-like protein 1517765..1518070 Clostridium botulinum A str. Hall 5400536 YP_001387329.1 CDS CLC_1464 NC_009698.1 1518729 1519706 D identified by Glimmer3; hypothetical protein 1518729..1519706 Clostridium botulinum A str. Hall 5399809 YP_001387330.1 CDS CLC_1465 NC_009698.1 1520090 1520488 D identified by Glimmer3; hypothetical protein 1520090..1520488 Clostridium botulinum A str. Hall 5400141 YP_001387331.1 CDS CLC_1466 NC_009698.1 1520839 1521141 D identified by Glimmer3; hypothetical protein 1520839..1521141 Clostridium botulinum A str. Hall 5400591 YP_001387332.1 CDS CLC_1467 NC_009698.1 1521344 1523572 D identified by match to protein family HMM PF02491; cell division protein FtsA 1521344..1523572 Clostridium botulinum A str. Hall 5399990 YP_001387333.1 CDS CLC_1468 NC_009698.1 1523792 1524970 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1523792..1524970 Clostridium botulinum A str. Hall 5400392 YP_001387334.1 CDS CLC_1469 NC_009698.1 1525026 1525877 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1525026..1525877 Clostridium botulinum A str. Hall 5401419 YP_001387335.1 CDS CLC_1470 NC_009698.1 1526357 1527310 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1526357..1527310 Clostridium botulinum A str. Hall 5399777 YP_001387336.1 CDS spoVB-1 NC_009698.1 1527342 1528949 D identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B 1527342..1528949 Clostridium botulinum A str. Hall 5399450 YP_001387337.1 CDS CLC_1472 NC_009698.1 1528986 1530491 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900; polysaccharide biosynthesis family protein complement(1528986..1530491) Clostridium botulinum A str. Hall 5400987 YP_001387338.1 CDS CLC_1473 NC_009698.1 1530824 1531387 D hypothetical protein 1530824..1531387 Clostridium botulinum A str. Hall 5398588 YP_001387339.1 CDS CLC_1474 NC_009698.1 1531408 1531815 R hypothetical protein complement(1531408..1531815) Clostridium botulinum A str. Hall 5398737 YP_001387340.1 CDS CLC_1475 NC_009698.1 1532914 1534113 D identified by match to protein family HMM PF00465; alcohol dehydrogenase 1532914..1534113 Clostridium botulinum A str. Hall 5401687 YP_001387341.1 CDS CLC_1476 NC_009698.1 1534474 1536792 D identified by match to protein family HMM PF05362; ATP-dependent protease 1534474..1536792 Clostridium botulinum A str. Hall 5399783 YP_001387342.1 CDS npr-1 NC_009698.1 1538133 1539860 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1538133..1539860) Clostridium botulinum A str. Hall 5399501 YP_001387343.1 CDS npr-2 NC_009698.1 1539997 1541775 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1539997..1541775) Clostridium botulinum A str. Hall 5401584 YP_001387344.1 CDS npr-3 NC_009698.1 1541891 1543675 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1541891..1543675) Clostridium botulinum A str. Hall 5399622 YP_001387345.1 CDS npr-4 NC_009698.1 1543795 1545579 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1543795..1545579) Clostridium botulinum A str. Hall 5398345 YP_001387346.1 CDS npr-5 NC_009698.1 1545699 1547444 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1545699..1547444) Clostridium botulinum A str. Hall 5399027 YP_001387347.1 CDS npr-6 NC_009698.1 1547478 1549220 R identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase complement(1547478..1549220) Clostridium botulinum A str. Hall 5400100 YP_001387348.1 CDS nadC NC_009698.1 1549823 1550659 R identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase complement(1549823..1550659) Clostridium botulinum A str. Hall 5400514 YP_001387349.1 CDS nadB NC_009698.1 1550640 1551941 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1550640..1551941) Clostridium botulinum A str. Hall 5399693 YP_001387350.1 CDS nadA NC_009698.1 1551944 1552858 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1551944..1552858) Clostridium botulinum A str. Hall 5400806 YP_001387351.1 CDS CLC_1487 NC_009698.1 1553230 1554156 D identified by Glimmer3; hypothetical protein 1553230..1554156 Clostridium botulinum A str. Hall 5401652 YP_001387352.1 CDS hlyIII NC_009698.1 1554253 1554891 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(1554253..1554891) Clostridium botulinum A str. Hall 5399609 YP_001387353.1 CDS ychF NC_009698.1 1555012 1556109 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1555012..1556109) Clostridium botulinum A str. Hall 5401249 YP_001387354.1 CDS mraZ NC_009698.1 1556803 1557273 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1556803..1557273 Clostridium botulinum A str. Hall 5400346 YP_001387355.1 CDS mraW NC_009698.1 1557353 1558282 D identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1557353..1558282 Clostridium botulinum A str. Hall 5400638 YP_001387356.1 CDS CLC_1492 NC_009698.1 1558364 1558867 D cell division protein FtsL 1558364..1558867 Clostridium botulinum A str. Hall 5398554 YP_001387357.1 CDS CLC_1493 NC_009698.1 1558883 1561063 D identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 1558883..1561063 Clostridium botulinum A str. Hall 5401449 YP_001387358.1 CDS murE NC_009698.1 1561293 1562744 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1561293..1562744 Clostridium botulinum A str. Hall 5400241 YP_001387359.1 CDS murF NC_009698.1 1562770 1564158 D identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1562770..1564158 Clostridium botulinum A str. Hall 5399007 YP_001387360.1 CDS mraY NC_009698.1 1564194 1565147 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1564194..1565147 Clostridium botulinum A str. Hall 5400689 YP_001387361.1 CDS CLC_1497 NC_009698.1 1565226 1566338 D identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615; cell cycle protein FtsW 1565226..1566338 Clostridium botulinum A str. Hall 5401741 YP_001387362.1 CDS CLC_1498 NC_009698.1 1566657 1567427 D identified by match to protein family HMM PF08478; cell division protein FtsQ 1566657..1567427 Clostridium botulinum A str. Hall 5400785 YP_001387363.1 CDS CLC_1499 NC_009698.1 1567438 1568151 D identified by match to protein family HMM PF05949; hypothetical protein 1567438..1568151 Clostridium botulinum A str. Hall 5398733 YP_001387364.1 CDS sbp NC_009698.1 1568185 1568535 D identified by match to protein family HMM PF06947; small basic protein 1568185..1568535 Clostridium botulinum A str. Hall 5401615 YP_001387365.1 CDS CLC_1501 NC_009698.1 1568536 1569267 D identified by match to protein family HMM PF05949; hypothetical protein 1568536..1569267 Clostridium botulinum A str. Hall 5398825 YP_001387366.1 CDS CLC_1502 NC_009698.1 1569360 1570031 D identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1569360..1570031 Clostridium botulinum A str. Hall 5400918 YP_001387367.1 CDS CLC_1503 NC_009698.1 1570052 1570504 D identified by match to protein family HMM PF04472; hypothetical protein 1570052..1570504 Clostridium botulinum A str. Hall 5398886 YP_001387368.1 CDS CLC_1504 NC_009698.1 1570521 1570796 D identified by match to protein family HMM PF02325; hypothetical protein 1570521..1570796 Clostridium botulinum A str. Hall 5399415 YP_001387369.1 CDS CLC_1505 NC_009698.1 1570797 1571567 D hypothetical protein 1570797..1571567 Clostridium botulinum A str. Hall 5398551 YP_001387370.1 CDS divIVA NC_009698.1 1571583 1572242 D identified by match to protein family HMM PF05103; cell-division initiation protein DivIVA 1571583..1572242 Clostridium botulinum A str. Hall 5398997 YP_001387371.1 CDS aroB NC_009698.1 1572650 1573738 D identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357; 3-dehydroquinate synthase 1572650..1573738 Clostridium botulinum A str. Hall 5399582 YP_001387372.1 CDS mtnN NC_009698.1 1573739 1574431 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1573739..1574431 Clostridium botulinum A str. Hall 5401007 YP_001387373.1 CDS aroF NC_009698.1 1574552 1575352 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 1574552..1575352 Clostridium botulinum A str. Hall 5400537 YP_001387374.1 CDS aroA NC_009698.1 1575486 1576814 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1575486..1576814 Clostridium botulinum A str. Hall 5399467 YP_001387375.1 CDS CLC_1511 NC_009698.1 1577031 1577654 D identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890; RNA polymerase-binding protein DksA 1577031..1577654 Clostridium botulinum A str. Hall 5398718 YP_001387376.1 CDS lspA NC_009698.1 1578058 1578501 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1578058..1578501 Clostridium botulinum A str. Hall 5399344 YP_001387377.1 CDS CLC_1513 NC_009698.1 1578505 1579422 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1578505..1579422 Clostridium botulinum A str. Hall 5399528 YP_001387378.1 CDS pyrR-1 NC_009698.1 1579909 1580445 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1579909..1580445 Clostridium botulinum A str. Hall 5401668 YP_001387379.1 CDS CLC_1515 NC_009698.1 1580489 1581832 D identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1580489..1581832 Clostridium botulinum A str. Hall 5400337 YP_001387380.1 CDS xth NC_009698.1 1582422 1583183 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1582422..1583183 Clostridium botulinum A str. Hall 5400386 YP_001387381.1 CDS CLC_1517 NC_009698.1 1583406 1584548 D identified by match to protein family HMM PF01170; methyltransferase 1583406..1584548 Clostridium botulinum A str. Hall 5399409 YP_001387382.1 CDS CLC_1518 NC_009698.1 1584779 1585324 D identified by Glimmer3; hypothetical protein 1584779..1585324 Clostridium botulinum A str. Hall 5399776 YP_001387383.1 CDS modA NC_009698.1 1585502 1586317 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein 1585502..1586317 Clostridium botulinum A str. Hall 5401393 YP_001387384.1 CDS modB NC_009698.1 1586327 1586998 D identified by match to protein family HMM PF00528; molybdate ABC transporter permease 1586327..1586998 Clostridium botulinum A str. Hall 5400353 YP_001387385.1 CDS CLC_1521 NC_009698.1 1587326 1587997 D identified by match to protein family HMM PF00005; molybdate ABC transporter ATP-binding protein 1587326..1587997 Clostridium botulinum A str. Hall 5399423 YP_001387386.1 CDS CLC_1522 NC_009698.1 1588051 1588611 D hypothetical protein 1588051..1588611 Clostridium botulinum A str. Hall 5400908 YP_001387387.1 CDS CLC_1523 NC_009698.1 1588993 1589916 D identified by match to protein family HMM PF01734; patatin-like phospholipase 1588993..1589916 Clostridium botulinum A str. Hall 5401194 YP_001387388.1 CDS CLC_1524 NC_009698.1 1590216 1590371 D hypothetical protein 1590216..1590371 Clostridium botulinum A str. Hall 5398567 YP_001387389.1 CDS CLC_1525 NC_009698.1 1590644 1591696 D identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1590644..1591696 Clostridium botulinum A str. Hall 5398558 YP_001387390.1 CDS CLC_1526 NC_009698.1 1591784 1593181 D identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1591784..1593181 Clostridium botulinum A str. Hall 5398988 YP_001387391.1 CDS CLC_1527 NC_009698.1 1593323 1595053 D identified by match to protein family HMM PF00111; (Fe-S)-binding protein 1593323..1595053 Clostridium botulinum A str. Hall 5401743 YP_001387392.1 CDS CLC_1528 NC_009698.1 1595143 1596072 D identified by match to protein family HMM PF02492; CobW/P47K family protein 1595143..1596072 Clostridium botulinum A str. Hall 5399476 YP_001387393.1 CDS CLC_1529 NC_009698.1 1596095 1596967 D identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1596095..1596967 Clostridium botulinum A str. Hall 5399701 YP_001387394.1 CDS mtbC NC_009698.1 1596993 1597655 D identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370; dimethylamine corrinoid protein 1596993..1597655 Clostridium botulinum A str. Hall 5401060 YP_001387395.1 CDS CLC_1531 NC_009698.1 1597740 1598762 D catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M; methylcobalamin:coenzyme M methyltransferase 1597740..1598762 Clostridium botulinum A str. Hall 5401649 YP_001387396.1 CDS CLC_1532 NC_009698.1 1599708 1600778 D identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1599708..1600778 Clostridium botulinum A str. Hall 5398301 YP_001387397.1 CDS CLC_1533 NC_009698.1 1600801 1601763 D identified by match to protein family HMM PF00005; methionine ABC transporter ATP-binding protein 1600801..1601763 Clostridium botulinum A str. Hall 5399269 YP_001387398.1 CDS CLC_1534 NC_009698.1 1601765 1602421 D identified by match to protein family HMM PF00528; methionine ABC transporter permease 1601765..1602421 Clostridium botulinum A str. Hall 5399673 YP_001387399.1 CDS CLC_1535 NC_009698.1 1602565 1603383 D identified by match to protein family HMM PF03180; NLPA family lipoprotein 1602565..1603383 Clostridium botulinum A str. Hall 5398598 YP_001387400.1 CDS CLC_1536 NC_009698.1 1603474 1604043 R identified by match to protein family HMM PF02493; MORN repeat-containing protein complement(1603474..1604043) Clostridium botulinum A str. Hall 5400792 YP_001387401.1 CDS CLC_1537 NC_009698.1 1604621 1605640 D identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 1604621..1605640 Clostridium botulinum A str. Hall 5401677 YP_001387402.1 CDS asnA NC_009698.1 1605969 1606991 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1605969..1606991 Clostridium botulinum A str. Hall 5401417 YP_001387403.1 CDS CLC_1539 NC_009698.1 1607100 1608665 R identified by match to protein family HMM PF00355; match to protein family HMM PF01266; oxidoreductase, FAD dependent complement(1607100..1608665) Clostridium botulinum A str. Hall 5399585 YP_001387404.1 CDS CLC_1540 NC_009698.1 1609020 1610879 D identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 1609020..1610879 Clostridium botulinum A str. Hall 5398532 YP_001387405.1 CDS CLC_1541 NC_009698.1 1610906 1612819 D identified by match to protein family HMM PF00488; MutS domain-containing protein 1610906..1612819 Clostridium botulinum A str. Hall 5401008 YP_001387406.1 CDS CLC_1542 NC_009698.1 1613136 1614272 D identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase 1613136..1614272 Clostridium botulinum A str. Hall 5401776 YP_001387407.1 CDS CLC_1543 NC_009698.1 1614330 1614821 R identified by match to protein family HMM PF04073; hypothetical protein complement(1614330..1614821) Clostridium botulinum A str. Hall 5399845 YP_001387408.1 CDS CLC_1544 NC_009698.1 1615058 1615756 D identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1615058..1615756 Clostridium botulinum A str. Hall 5400727 YP_001387409.1 CDS CLC_1546 NC_009698.1 1617980 1618603 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1617980..1618603 Clostridium botulinum A str. Hall 5399353 YP_001387410.1 CDS CLC_1547 NC_009698.1 1618965 1619516 D hypothetical protein 1618965..1619516 Clostridium botulinum A str. Hall 5400716 YP_001387411.1 CDS CLC_1548 NC_009698.1 1619529 1620626 D identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1619529..1620626 Clostridium botulinum A str. Hall 5400046 YP_001387412.1 CDS CLC_1549 NC_009698.1 1620619 1621512 D identified by match to protein family HMM PF00528; carbohydrate ABC transporter permease 1620619..1621512 Clostridium botulinum A str. Hall 5400226 YP_001387413.1 CDS CLC_1550 NC_009698.1 1621548 1622372 D identified by match to protein family HMM PF00528; carbohydrate ABC transporter permease 1621548..1622372 Clostridium botulinum A str. Hall 5401202 YP_001387414.1 CDS CLC_1551 NC_009698.1 1622418 1623779 D identified by match to protein family HMM PF01547; carbohydrate ABC transporter periplasmic-binding protein 1622418..1623779 Clostridium botulinum A str. Hall 5401224 YP_001387415.1 CDS ldh NC_009698.1 1624003 1624959 R identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase complement(1624003..1624959) Clostridium botulinum A str. Hall 5399830 YP_001387416.1 CDS CLC_1553 NC_009698.1 1625489 1626199 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1625489..1626199 Clostridium botulinum A str. Hall 5400171 YP_001387417.1 CDS CLC_1554 NC_009698.1 1626646 1627134 R identified by match to protein family HMM TIGR01909; redox family protein complement(1626646..1627134) Clostridium botulinum A str. Hall 5398666 YP_001387418.1 CDS CLC_1555 NC_009698.1 1627368 1628315 D identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 1627368..1628315 Clostridium botulinum A str. Hall 5401260 YP_001387420.1 CDS CLC_1557 NC_009698.1 1629178 1631376 D identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1629178..1631376 Clostridium botulinum A str. Hall 5400024 YP_001387421.1 CDS CLC_1558 NC_009698.1 1631484 1631831 D identified by match to protein family HMM PF03860; hypothetical protein 1631484..1631831 Clostridium botulinum A str. Hall 5400780 YP_001387422.1 CDS CLC_1559 NC_009698.1 1632199 1634271 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1632199..1634271 Clostridium botulinum A str. Hall 5400258 YP_001387423.1 CDS CLC_1560 NC_009698.1 1634477 1634944 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1634477..1634944 Clostridium botulinum A str. Hall 5401078 YP_001387424.1 CDS CLC_1561 NC_009698.1 1634971 1635513 D hypothetical protein 1634971..1635513 Clostridium botulinum A str. Hall 5399498 YP_001387425.1 CDS CLC_1562 NC_009698.1 1635662 1636015 R identified by match to protein family HMM PF01638; transcriptional regulator complement(1635662..1636015) Clostridium botulinum A str. Hall 5399306 YP_001387426.1 CDS CLC_1563 NC_009698.1 1636410 1636775 D identified by match to protein family HMM PF00903; glyoxalase 1636410..1636775 Clostridium botulinum A str. Hall 5399720 YP_001387427.1 CDS ogt NC_009698.1 1636804 1637274 D Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated; methylated-DNA--protein-cysteine methyltransferase 1636804..1637274 Clostridium botulinum A str. Hall 5398867 YP_001387428.1 CDS CLC_1565 NC_009698.1 1637301 1638518 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1637301..1638518 Clostridium botulinum A str. Hall 5399870 YP_001387429.1 CDS CLC_1566 NC_009698.1 1638683 1639891 D identified by match to protein family HMM PF06792; hypothetical protein 1638683..1639891 Clostridium botulinum A str. Hall 5401616 YP_001387430.1 CDS CLC_1567 NC_009698.1 1639916 1640746 D hypothetical protein 1639916..1640746 Clostridium botulinum A str. Hall 5399641 YP_001387431.1 CDS CLC_1568 NC_009698.1 1641136 1642248 D identified by match to protein family HMM PF01381; DNA-binding protein 1641136..1642248 Clostridium botulinum A str. Hall 5399708 YP_001387432.1 CDS CLC_1569 NC_009698.1 1642301 1642930 D identified by similarity to SP:Q80XR2; cation transporting ATPase-like protein 1642301..1642930 Clostridium botulinum A str. Hall 5398685 YP_001387433.1 CDS CLC_1570 NC_009698.1 1642987 1643856 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1642987..1643856 Clostridium botulinum A str. Hall 5401012 YP_001387434.1 CDS CLC_1571 NC_009698.1 1644342 1645745 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 1644342..1645745 Clostridium botulinum A str. Hall 5401229 YP_001387435.1 CDS CLC_1572 NC_009698.1 1646181 1646540 D identified by match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent repressor 1646181..1646540 Clostridium botulinum A str. Hall 5399847 YP_001387436.1 CDS CLC_1573 NC_009698.1 1646638 1647045 D hypothetical protein 1646638..1647045 Clostridium botulinum A str. Hall 5399865 YP_001387437.1 CDS CLC_1574 NC_009698.1 1647426 1648280 D identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; HDIG domain-containing protein 1647426..1648280 Clostridium botulinum A str. Hall 5398550 YP_008472685.1 CDS CLC_1576 NC_009698.1 1648397 1648558 D hypothetical protein 1648397..1648558 Clostridium botulinum A str. Hall 5400976 YP_001387438.1 CDS CLC_1577 NC_009698.1 1648735 1651371 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type complement(1648735..1651371) Clostridium botulinum A str. Hall 5400095 YP_001387439.1 CDS CLC_1578 NC_009698.1 1652164 1652526 D identified by match to protein family HMM PF00903; glyoxalase 1652164..1652526 Clostridium botulinum A str. Hall 5401324 YP_001387440.1 CDS CLC_1580 NC_009698.1 1653455 1654150 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 1653455..1654150 Clostridium botulinum A str. Hall 5401711 YP_001387441.1 CDS CLC_1581 NC_009698.1 1654268 1654438 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1654268..1654438 Clostridium botulinum A str. Hall 5399957 YP_001387442.1 CDS CLC_1582 NC_009698.1 1654498 1655184 R identified by match to protein family HMM PF06445; transcription activator effector binding domain-containing protein complement(1654498..1655184) Clostridium botulinum A str. Hall 5400194 YP_001387443.1 CDS CLC_1583 NC_009698.1 1655278 1656222 R identified by match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein complement(1655278..1656222) Clostridium botulinum A str. Hall 5400787 YP_001387444.1 CDS CLC_1584 NC_009698.1 1656846 1657841 D identified by match to protein family HMM PF06050; 2-hydroxyglutaryl-CoA dehydratase subunit 1656846..1657841 Clostridium botulinum A str. Hall 5398872 YP_001387445.1 CDS hgdC-1 NC_009698.1 1657958 1658719 D identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 1657958..1658719 Clostridium botulinum A str. Hall 5399691 YP_001387446.1 CDS CLC_1586 NC_009698.1 1658737 1659168 D identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367; 6-pyruvoyl-tetrahydropterin synthase 1658737..1659168 Clostridium botulinum A str. Hall 5398695 YP_001387447.1 CDS CLC_1587 NC_009698.1 1659170 1659835 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1659170..1659835 Clostridium botulinum A str. Hall 5401164 YP_001387448.1 CDS folE NC_009698.1 1659839 1660429 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1659839..1660429 Clostridium botulinum A str. Hall 5399029 YP_001387449.1 CDS CLC_1589 NC_009698.1 1660613 1661272 D identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 1660613..1661272 Clostridium botulinum A str. Hall 5398869 YP_001387450.1 CDS CLC_1590 NC_009698.1 1661387 1662343 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1661387..1662343 Clostridium botulinum A str. Hall 5400356 YP_001387451.1 CDS CLC_1591 NC_009698.1 1662518 1663270 D identified by match to protein family HMM PF06161; hypothetical protein 1662518..1663270 Clostridium botulinum A str. Hall 5400382 YP_001387452.1 CDS CLC_1592 NC_009698.1 1663592 1664011 D hypothetical protein 1663592..1664011 Clostridium botulinum A str. Hall 5399426 YP_001387453.1 CDS CLC_1593 NC_009698.1 1664033 1664971 D identified by match to protein family HMM PF04198; deoxyribonucleoside regulator 1664033..1664971 Clostridium botulinum A str. Hall 5399184 YP_001387454.1 CDS deoC NC_009698.1 1665263 1665901 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1665263..1665901 Clostridium botulinum A str. Hall 5400733 YP_001387455.1 CDS rbsK NC_009698.1 1666245 1667156 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 1666245..1667156 Clostridium botulinum A str. Hall 5400786 YP_001387456.1 CDS hisZ NC_009698.1 1667604 1668839 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 1667604..1668839 Clostridium botulinum A str. Hall 5399020 YP_001387457.1 CDS hisG NC_009698.1 1668864 1669502 D short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 1668864..1669502 Clostridium botulinum A str. Hall 5398484 YP_001387458.1 CDS hisD NC_009698.1 1669580 1670884 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1669580..1670884 Clostridium botulinum A str. Hall 5401613 YP_001387459.1 CDS hisB NC_009698.1 1671034 1671624 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1671034..1671624 Clostridium botulinum A str. Hall 5399073 YP_001387460.1 CDS hisH NC_009698.1 1671752 1672357 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1671752..1672357 Clostridium botulinum A str. Hall 5399185 YP_001387461.1 CDS hisA NC_009698.1 1672354 1673082 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1672354..1673082 Clostridium botulinum A str. Hall 5400248 YP_001387462.1 CDS hisC NC_009698.1 1673079 1674143 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1673079..1674143 Clostridium botulinum A str. Hall 5399619 YP_001387463.1 CDS hisF NC_009698.1 1674340 1675101 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1674340..1675101 Clostridium botulinum A str. Hall 5399507 YP_008472686.1 CDS CLC_1604A NC_009698.1 1675254 1675586 D phosphoribosyl-AMP cyclohydrolase 1675254..1675586 Clostridium botulinum A str. Hall 16691480 YP_008472687.1 CDS CLC_1604B NC_009698.1 1675711 1676043 D phosphoribosyl-ATP pyrophosphatase 1675711..1676043 Clostridium botulinum A str. Hall 16691471 YP_001387464.1 CDS CLC_1605 NC_009698.1 1676179 1676874 D identified by match to protein family HMM PF04143; hypothetical protein 1676179..1676874 Clostridium botulinum A str. Hall 5400105 YP_001387465.1 CDS CLC_1606 NC_009698.1 1676888 1677109 D identified by match to protein family HMM PF01206; hypothetical protein 1676888..1677109 Clostridium botulinum A str. Hall 5398936 YP_001387466.1 CDS CLC_1607 NC_009698.1 1677127 1677654 D identified by match to protein family HMM PF04143; hypothetical protein 1677127..1677654 Clostridium botulinum A str. Hall 5399617 YP_001387467.1 CDS CLC_1608 NC_009698.1 1677685 1678575 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1677685..1678575) Clostridium botulinum A str. Hall 5401447 YP_001387468.1 CDS CLC_1609 NC_009698.1 1678839 1680089 D identified by match to protein family HMM PF01235; sodium:alanine symporter family protein 1678839..1680089 Clostridium botulinum A str. Hall 5401509 YP_001387469.1 CDS CLC_1610 NC_009698.1 1680170 1681870 D identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1680170..1681870 Clostridium botulinum A str. Hall 5400735 YP_001387470.1 CDS CLC_1611 NC_009698.1 1682023 1683279 D identified by match to protein family HMM PF04143; hypothetical protein 1682023..1683279 Clostridium botulinum A str. Hall 5400003 YP_001387471.1 CDS CLC_1612 NC_009698.1 1683586 1684293 D identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein 1683586..1684293 Clostridium botulinum A str. Hall 5398746 YP_001387472.1 CDS CLC_1613 NC_009698.1 1684296 1685027 D antibiotic ABC transporter permease 1684296..1685027 Clostridium botulinum A str. Hall 5399683 YP_001387473.1 CDS CLC_1614 NC_009698.1 1685030 1685773 D antibiotic ABC transporter permease 1685030..1685773 Clostridium botulinum A str. Hall 5400874 YP_001387474.1 CDS CLC_1615 NC_009698.1 1685890 1686549 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; antibiotic transporter response regulator 1685890..1686549 Clostridium botulinum A str. Hall 5401482 YP_001387475.1 CDS CLC_1616 NC_009698.1 1686540 1687919 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; antibiotic transporter sensor protein 1686540..1687919 Clostridium botulinum A str. Hall 5399737 YP_001387476.1 CDS arcA-2 NC_009698.1 1688483 1689709 D identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078; arginine deiminase 1688483..1689709 Clostridium botulinum A str. Hall 5398966 YP_001387477.1 CDS arcD NC_009698.1 1689834 1691252 D identified by match to protein family HMM PF00324; arginine/ornithine antiporter 1689834..1691252 Clostridium botulinum A str. Hall 5401757 YP_001387478.1 CDS CLC_1619 NC_009698.1 1691472 1692122 R identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III complement(1691472..1692122) Clostridium botulinum A str. Hall 5399679 YP_001387479.1 CDS CLC_1620 NC_009698.1 1692493 1693089 D identified by match to protein family HMM PF08876; hypothetical protein 1692493..1693089 Clostridium botulinum A str. Hall 5399628 YP_001387480.1 CDS CLC_1621 NC_009698.1 1693460 1694020 D identified by match to protein family HMM PF01966; HD domain-containing protein 1693460..1694020 Clostridium botulinum A str. Hall 5399345 YP_001387482.1 CDS CLC_1623 NC_009698.1 1694536 1694874 R identified by Glimmer3; hypothetical protein complement(1694536..1694874) Clostridium botulinum A str. Hall 5399315 YP_001387483.1 CDS CLC_1624 NC_009698.1 1695141 1698434 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455; SNF2 family helicase 1695141..1698434 Clostridium botulinum A str. Hall 5401258 YP_001387484.1 CDS CLC_1625 NC_009698.1 1698624 1699439 D identified by match to protein family HMM PF04607; RelA/SpoT domain-containing protein 1698624..1699439 Clostridium botulinum A str. Hall 5399391 YP_001387485.1 CDS CLC_1626 NC_009698.1 1699858 1700313 D hypothetical protein 1699858..1700313 Clostridium botulinum A str. Hall 5401497 YP_001387486.1 CDS CLC_1627 NC_009698.1 1700560 1701549 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1700560..1701549 Clostridium botulinum A str. Hall 5400741 YP_001387487.1 CDS CLC_1628 NC_009698.1 1701698 1703452 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1701698..1703452 Clostridium botulinum A str. Hall 5401350 YP_001387488.1 CDS CLC_1629 NC_009698.1 1703454 1705178 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1703454..1705178 Clostridium botulinum A str. Hall 5399486 YP_001387489.1 CDS CLC_1630 NC_009698.1 1705570 1706571 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 1705570..1706571 Clostridium botulinum A str. Hall 5401685 YP_001387490.1 CDS CLC_1631 NC_009698.1 1706875 1707822 D identified by match to protein family HMM PF00480; glucokinase 1706875..1707822 Clostridium botulinum A str. Hall 5400381 YP_001387491.1 CDS CLC_1632 NC_009698.1 1708069 1709733 D identified by match to protein family HMM PF00128; glycosyl hydrolase 1708069..1709733 Clostridium botulinum A str. Hall 5400518 YP_001387492.1 CDS CLC_1633 NC_009698.1 1709775 1711433 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003; PTS system glucose/glucoside family transporter subunit IIBC 1709775..1711433 Clostridium botulinum A str. Hall 5399663 YP_001387493.1 CDS CLC_1635 NC_009698.1 1712452 1713075 D identified by match to protein family HMM TIGR02840; hypothetical protein 1712452..1713075 Clostridium botulinum A str. Hall 5398714 YP_001387494.1 CDS CLC_1636 NC_009698.1 1713364 1713699 R hypothetical protein complement(1713364..1713699) Clostridium botulinum A str. Hall 5400899 YP_001387495.1 CDS CLC_1637 NC_009698.1 1714027 1715634 D hypothetical protein 1714027..1715634 Clostridium botulinum A str. Hall 5401456 YP_001387496.1 CDS CLC_1638 NC_009698.1 1715792 1716247 D hypothetical protein 1715792..1716247 Clostridium botulinum A str. Hall 5400510 YP_001387497.1 CDS CLC_1639 NC_009698.1 1716543 1718705 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1716543..1718705) Clostridium botulinum A str. Hall 5401806 YP_001387498.1 CDS CLC_1640 NC_009698.1 1718683 1719375 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1718683..1719375) Clostridium botulinum A str. Hall 5398266 YP_001387500.1 CDS CLC_1642 NC_009698.1 1719970 1721196 D identified by match to protein family HMM PF07690; major facilitator family transporter 1719970..1721196 Clostridium botulinum A str. Hall 5400107 YP_001387501.1 CDS CLC_1643 NC_009698.1 1721751 1722611 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase complement(1721751..1722611) Clostridium botulinum A str. Hall 5401772 YP_001387502.1 CDS CLC_1644 NC_009698.1 1722620 1723387 R identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator complement(1722620..1723387) Clostridium botulinum A str. Hall 5401141 YP_001387503.1 CDS CLC_1645 NC_009698.1 1723910 1724440 D identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma factor 1723910..1724440 Clostridium botulinum A str. Hall 5401443 YP_001387504.1 CDS CLC_1646 NC_009698.1 1724630 1724809 D hypothetical protein 1724630..1724809 Clostridium botulinum A str. Hall 5399459 YP_001387505.1 CDS CLC_1647 NC_009698.1 1724992 1728621 R identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453; collagenase complement(1724992..1728621) Clostridium botulinum A str. Hall 5400941 YP_001387506.1 CDS metF NC_009698.1 1729095 1729982 D identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 1729095..1729982 Clostridium botulinum A str. Hall 5400681 YP_001387507.1 CDS CLC_1649 NC_009698.1 1730155 1730835 D identified by match to protein family HMM PF02965; hypothetical protein 1730155..1730835 Clostridium botulinum A str. Hall 5398701 YP_001387508.1 CDS CLC_1650 NC_009698.1 1730825 1733203 D identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; 5-methyltetrahydrofolate--homocysteine methyltransferase 1730825..1733203 Clostridium botulinum A str. Hall 5399477 YP_001387509.1 CDS CLC_1651 NC_009698.1 1733450 1733869 R hypothetical protein complement(1733450..1733869) Clostridium botulinum A str. Hall 5401698 YP_001387510.1 CDS CLC_1652 NC_009698.1 1734348 1734920 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 1734348..1734920 Clostridium botulinum A str. Hall 5400154 YP_001387511.1 CDS CLC_1653 NC_009698.1 1734913 1736367 D hypothetical protein 1734913..1736367 Clostridium botulinum A str. Hall 5401545 YP_001387512.1 CDS CLC_1655 NC_009698.1 1738839 1739210 D identified by match to protein family HMM TIGR02058; hypothetical protein 1738839..1739210 Clostridium botulinum A str. Hall 5401278 YP_001387513.1 CDS acoA NC_009698.1 1739231 1740214 D identified by match to protein family HMM PF00676; TPP-dependent acetoin dehydrogenase complex, E1 component subunit alpha 1739231..1740214 Clostridium botulinum A str. Hall 5400697 YP_001387514.1 CDS acoB NC_009698.1 1740217 1741188 D identified by match to protein family HMM PF02779; match to protein family HMM PF02780; TPP-dependent acetoin dehydrogenase complex, E1 component subunit beta 1740217..1741188 Clostridium botulinum A str. Hall 5399945 YP_001387515.1 CDS acoX NC_009698.1 1741241 1742236 D identified by match to protein family HMM PF01513; acetoin catabolism protein X 1741241..1742236 Clostridium botulinum A str. Hall 5399719 YP_001387516.1 CDS acoC NC_009698.1 1742272 1743582 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase 1742272..1743582 Clostridium botulinum A str. Hall 5401631 YP_001387517.1 CDS acoL NC_009698.1 1743595 1744986 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase 1743595..1744986 Clostridium botulinum A str. Hall 5400231 YP_001387518.1 CDS CLC_1661 NC_009698.1 1745011 1746006 D identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 1745011..1746006 Clostridium botulinum A str. Hall 5400776 YP_001387519.1 CDS CLC_1662 NC_009698.1 1746345 1747505 D identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline ABC transporter ATP-binding protein 1746345..1747505 Clostridium botulinum A str. Hall 5401344 YP_001387520.1 CDS CLC_1663 NC_009698.1 1747498 1749081 D identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein 1747498..1749081 Clostridium botulinum A str. Hall 5400156 YP_001387521.1 CDS thrC NC_009698.1 1749896 1751377 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1749896..1751377 Clostridium botulinum A str. Hall 5398411 YP_001387522.1 CDS thrB NC_009698.1 1751387 1752280 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1751387..1752280 Clostridium botulinum A str. Hall 5400316 YP_001387523.1 CDS CLC_1666 NC_009698.1 1752407 1753726 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1752407..1753726 Clostridium botulinum A str. Hall 5399858 YP_001387524.1 CDS hom-1 NC_009698.1 1753949 1755226 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1753949..1755226 Clostridium botulinum A str. Hall 5401133 YP_001387525.1 CDS CLC_1668 NC_009698.1 1755813 1757723 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator 1755813..1757723 Clostridium botulinum A str. Hall 5398677 YP_001387526.1 CDS CLC_1669 NC_009698.1 1758232 1759398 D identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1758232..1759398 Clostridium botulinum A str. Hall 5398285 YP_001387527.1 CDS CLC_1670 NC_009698.1 1759727 1760614 D identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 1759727..1760614 Clostridium botulinum A str. Hall 5401688 YP_001387528.1 CDS gltA-1 NC_009698.1 1760614 1761996 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1760614..1761996 Clostridium botulinum A str. Hall 5399427 YP_001387529.1 CDS CLC_1672 NC_009698.1 1762225 1764189 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; sensory box sigma-54 dependent transcriptional regulator 1762225..1764189 Clostridium botulinum A str. Hall 5400640 YP_001387530.1 CDS CLC_1673 NC_009698.1 1764196 1764897 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1764196..1764897 Clostridium botulinum A str. Hall 5401082 YP_001387531.1 CDS CLC_1674 NC_009698.1 1765320 1766399 D identified by match to protein family HMM PF02368; Ig-like domain-containing protein 1765320..1766399 Clostridium botulinum A str. Hall 5399428 YP_001387532.1 CDS CLC_1675 NC_009698.1 1766508 1766711 D identified by Glimmer3; hypothetical protein 1766508..1766711 Clostridium botulinum A str. Hall 5401225 YP_001387533.1 CDS CLC_1676 NC_009698.1 1766891 1767112 D lipoprotein 1766891..1767112 Clostridium botulinum A str. Hall 5399465 YP_001387534.1 CDS CLC_1677 NC_009698.1 1767471 1767632 D hypothetical protein 1767471..1767632 Clostridium botulinum A str. Hall 5400092 YP_001387535.1 CDS CLC_1678 NC_009698.1 1767920 1768294 D identified by match to protein family HMM PF08239; hypothetical protein 1767920..1768294 Clostridium botulinum A str. Hall 5398590 YP_001387536.1 CDS CLC_1679 NC_009698.1 1768480 1768704 D identified by Glimmer3; hypothetical protein 1768480..1768704 Clostridium botulinum A str. Hall 5400674 YP_001387537.1 CDS CLC_1680 NC_009698.1 1769172 1769408 D identified by Glimmer3; hypothetical protein 1769172..1769408 Clostridium botulinum A str. Hall 5401100 YP_001387538.1 CDS CLC_1681 NC_009698.1 1769564 1770115 D hypothetical protein 1769564..1770115 Clostridium botulinum A str. Hall 5401820 YP_008472688.1 CDS CLC_1682 NC_009698.1 1770153 1770440 D Fis family transcriptional regulator 1770153..1770440 Clostridium botulinum A str. Hall 5400253 YP_001387539.1 CDS CLC_1683 NC_009698.1 1770941 1771573 D hypothetical protein 1770941..1771573 Clostridium botulinum A str. Hall 5400492 YP_001387540.1 CDS CLC_1684 NC_009698.1 1771606 1772160 D identified by match to protein family HMM PF01814; hypothetical protein 1771606..1772160 Clostridium botulinum A str. Hall 5401629 YP_001387541.1 CDS alr NC_009698.1 1772598 1773767 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1772598..1773767 Clostridium botulinum A str. Hall 5400037 YP_001387542.1 CDS CLC_1686 NC_009698.1 1774188 1775660 D identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1774188..1775660 Clostridium botulinum A str. Hall 5399238 YP_001387543.1 CDS CLC_1687 NC_009698.1 1775748 1777088 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 1775748..1777088 Clostridium botulinum A str. Hall 5398400 YP_001387544.1 CDS CLC_1688 NC_009698.1 1777328 1778161 D identified by match to protein family HMM PF06161; hypothetical protein 1777328..1778161 Clostridium botulinum A str. Hall 5400390 YP_001387545.1 CDS CLC_1689 NC_009698.1 1778378 1779262 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase complement(1778378..1779262) Clostridium botulinum A str. Hall 5398916 YP_001387546.1 CDS CLC_1690 NC_009698.1 1779738 1781744 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1779738..1781744 Clostridium botulinum A str. Hall 5398839 YP_001387547.1 CDS CLC_1691 NC_009698.1 1782657 1783670 D identified by match to protein family HMM PF07656; hypothetical protein 1782657..1783670 Clostridium botulinum A str. Hall 5399191 YP_001387548.1 CDS CLC_1692 NC_009698.1 1783823 1784374 R hypothetical protein complement(1783823..1784374) Clostridium botulinum A str. Hall 5401144 YP_001387549.1 CDS CLC_1693 NC_009698.1 1784734 1787967 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455; Snf2/Rad54 family helicase 1784734..1787967 Clostridium botulinum A str. Hall 5400998 YP_001387550.1 CDS CLC_1694 NC_009698.1 1788023 1788304 R identified by match to protein family HMM PF01980; hypothetical protein complement(1788023..1788304) Clostridium botulinum A str. Hall 5400031 YP_001387551.1 CDS CLC_1695 NC_009698.1 1788905 1789429 D identified by match to protein family HMM PF02663; formylmethanofuran dehydrogenase E subunit-like protein 1788905..1789429 Clostridium botulinum A str. Hall 5399370 YP_001387552.1 CDS CLC_1696 NC_009698.1 1789566 1791161 D identified by match to protein family HMM PF00496; peptide/opine/nickel uptake ABC transporter substrate-binding protein 1789566..1791161 Clostridium botulinum A str. Hall 5398970 YP_001387553.1 CDS CLC_1697 NC_009698.1 1791175 1792149 D identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1791175..1792149 Clostridium botulinum A str. Hall 5401490 YP_001387554.1 CDS CLC_1698 NC_009698.1 1792153 1792974 D identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1792153..1792974 Clostridium botulinum A str. Hall 5399189 YP_001387555.1 CDS CLC_1699 NC_009698.1 1793005 1794687 D identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; ABC transporter ATP-binding protein 1793005..1794687 Clostridium botulinum A str. Hall 5399135 YP_001387556.1 CDS CLC_1700 NC_009698.1 1794928 1795515 R identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon complement(1794928..1795515) Clostridium botulinum A str. Hall 5399515 YP_001387557.1 CDS CLC_1701 NC_009698.1 1795810 1796760 D identified by match to protein family HMM PF06207; hypothetical protein 1795810..1796760 Clostridium botulinum A str. Hall 5401138 YP_001387558.1 CDS CLC_1702 NC_009698.1 1797032 1797667 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methlytransferase 1797032..1797667 Clostridium botulinum A str. Hall 5398891 YP_001387559.1 CDS CLC_1703 NC_009698.1 1797815 1798255 R identified by match to protein family HMM PF00011; heat shock protein complement(1797815..1798255) Clostridium botulinum A str. Hall 5398748 YP_001387560.1 CDS CLC_1704 NC_009698.1 1798606 1799790 D identified by match to protein family HMM PF07690; major facilitator family protein 1798606..1799790 Clostridium botulinum A str. Hall 5400388 YP_001387561.1 CDS CLC_1705 NC_009698.1 1799941 1800504 D identified by match to protein family HMM PF00440; hypothetical protein 1799941..1800504 Clostridium botulinum A str. Hall 5398702 YP_001387562.1 CDS fruK NC_009698.1 1800704 1801609 D identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; fructose-1-phosphate kinase 1800704..1801609 Clostridium botulinum A str. Hall 5400045 YP_001387563.1 CDS CLC_1707 NC_009698.1 1801726 1803105 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter complement(1801726..1803105) Clostridium botulinum A str. Hall 5399200 YP_001387564.1 CDS CLC_1708 NC_009698.1 1803700 1803855 D identified by Glimmer3; hypothetical protein 1803700..1803855 Clostridium botulinum A str. Hall 5401455 YP_001387565.1 CDS CLC_1709 NC_009698.1 1804007 1804981 D hypothetical protein 1804007..1804981 Clostridium botulinum A str. Hall 5400509 YP_001387566.1 CDS CLC_1710 NC_009698.1 1805092 1805625 R hypothetical protein complement(1805092..1805625) Clostridium botulinum A str. Hall 5401083 YP_001387567.1 CDS CLC_1711 NC_009698.1 1805888 1806043 D identified by Glimmer3; hypothetical protein 1805888..1806043 Clostridium botulinum A str. Hall 5399714 YP_001387568.1 CDS CLC_1712 NC_009698.1 1806080 1807039 D identified by match to protein family HMM PF00294; match to protein family HMM PF08543; PfkB family kinase 1806080..1807039 Clostridium botulinum A str. Hall 5399931 YP_001387569.1 CDS safA NC_009698.1 1807184 1807819 R identified by match to protein family HMM PF00188; match to protein family HMM PF01476; spore coat assembly protein SafA complement(1807184..1807819) Clostridium botulinum A str. Hall 5399592 YP_001387570.1 CDS CLC_1714 NC_009698.1 1808221 1808640 R identified by Glimmer3; hypothetical protein complement(1808221..1808640) Clostridium botulinum A str. Hall 5401279 YP_001387571.1 CDS CLC_1715 NC_009698.1 1808987 1809196 D identified by match to protein family HMM PF00313; cold shock protein 1808987..1809196 Clostridium botulinum A str. Hall 5400861 YP_001387572.1 CDS CLC_1716 NC_009698.1 1809572 1811575 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1809572..1811575 Clostridium botulinum A str. Hall 5401808 YP_001387573.1 CDS CLC_1717 NC_009698.1 1811856 1813436 R identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein complement(1811856..1813436) Clostridium botulinum A str. Hall 5401018 YP_001387574.1 CDS CLC_1718 NC_009698.1 1813742 1814233 D identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 1813742..1814233 Clostridium botulinum A str. Hall 5398849 YP_001387575.1 CDS CLC_1719 NC_009698.1 1814804 1815658 D identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite/nitrite reductase 1814804..1815658 Clostridium botulinum A str. Hall 5401210 YP_001387576.1 CDS cheV NC_009698.1 1815798 1816691 R identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV complement(1815798..1816691) Clostridium botulinum A str. Hall 5399210 YP_001387577.1 CDS CLC_1721 NC_009698.1 1817060 1818325 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1817060..1818325 Clostridium botulinum A str. Hall 5399023 YP_001387578.1 CDS CLC_1722 NC_009698.1 1818648 1819484 D identified by match to protein family HMM PF00575; RNA-binding protein 1818648..1819484 Clostridium botulinum A str. Hall 5399694 YP_001387579.1 CDS deaD NC_009698.1 1819663 1821108 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase DeaD 1819663..1821108 Clostridium botulinum A str. Hall 5398435 YP_001387580.1 CDS CLC_1724 NC_009698.1 1821262 1825719 D identified by Glimmer3; hypothetical protein 1821262..1825719 Clostridium botulinum A str. Hall 5401744 YP_001387581.1 CDS CLC_1725 NC_009698.1 1826118 1830197 D identified by match to protein family HMM PF00560; match to protein family HMM PF07532; hypothetical protein 1826118..1830197 Clostridium botulinum A str. Hall 5401354 YP_001387582.1 CDS CLC_1726 NC_009698.1 1830603 1831532 D identified by match to protein family HMM PF01832; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein 1830603..1831532 Clostridium botulinum A str. Hall 5400461 YP_001387583.1 CDS CLC_1727 NC_009698.1 1831658 1832173 R identified by match to protein family HMM PF00210; ferritin complement(1831658..1832173) Clostridium botulinum A str. Hall 5399529 YP_001387585.1 CDS CLC_1729 NC_009698.1 1832578 1833432 D identified by match to protein family HMM PF00072; match to protein family HMM PF04509; response regulator 1832578..1833432 Clostridium botulinum A str. Hall 5401471 YP_001387586.1 CDS cheX NC_009698.1 1833432 1833893 D identified by match to protein family HMM PF04509; chemotaxis protein CheX 1833432..1833893 Clostridium botulinum A str. Hall 5401363 YP_001387587.1 CDS CLC_1731 NC_009698.1 1834076 1835434 R identified by match to protein family HMM PF07670; hypothetical protein complement(1834076..1835434) Clostridium botulinum A str. Hall 5401432 YP_001387588.1 CDS CLC_1732 NC_009698.1 1836172 1836375 D identified by match to protein family HMM PF00269; small, acid-soluble spore protein alpha 1836172..1836375 Clostridium botulinum A str. Hall 5401738 YP_001387589.1 CDS CLC_1733 NC_009698.1 1836436 1836636 D identified by match to protein family HMM PF00269; small, acid-soluble spore protein beta 1836436..1836636 Clostridium botulinum A str. Hall 5400222 YP_001387590.1 CDS CLC_1734 NC_009698.1 1836840 1837169 R Selenoprotein. identified by match to protein family HMM TIGR01911; hesB family protein complement(1836840..1837169) Clostridium botulinum A str. Hall 5400871 YP_001387591.1 CDS xerC NC_009698.1 1838087 1839067 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1838087..1839067 Clostridium botulinum A str. Hall 5401500 YP_001387592.1 CDS CLC_1736 NC_009698.1 1839390 1839863 R hypothetical protein complement(1839390..1839863) Clostridium botulinum A str. Hall 5401132 YP_001387593.1 CDS lexA NC_009698.1 1840161 1840766 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1840161..1840766 Clostridium botulinum A str. Hall 5399521 YP_001387594.1 CDS CLC_1738 NC_009698.1 1840963 1842246 R identified by match to protein family HMM PF01053; match to protein family HMM PF06838; aluminum resistance protein complement(1840963..1842246) Clostridium botulinum A str. Hall 5399115 YP_001387595.1 CDS hfq NC_009698.1 1842347 1842604 R identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq complement(1842347..1842604) Clostridium botulinum A str. Hall 5400957 YP_001387596.1 CDS miaA NC_009698.1 1842690 1843625 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1842690..1843625) Clostridium botulinum A str. Hall 5401241 YP_001387597.1 CDS mutL NC_009698.1 1843641 1845641 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1843641..1845641) Clostridium botulinum A str. Hall 5398361 YP_001387598.1 CDS miaB NC_009698.1 1848665 1850017 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1848665..1850017) Clostridium botulinum A str. Hall 5399268 YP_001387599.1 CDS CLC_1744 NC_009698.1 1850489 1851679 D identified by match to protein family HMM PF00155; aminotransferase, classes I and II 1850489..1851679 Clostridium botulinum A str. Hall 5401710 YP_001387600.1 CDS CLC_1745 NC_009698.1 1851764 1851925 D identified by similarity to GB:ABK61786.1; hypothetical protein 1851764..1851925 Clostridium botulinum A str. Hall 5399770 YP_001387601.1 CDS aspB-1 NC_009698.1 1851980 1853170 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1851980..1853170 Clostridium botulinum A str. Hall 5400954 YP_001387602.1 CDS CLC_1747 NC_009698.1 1853201 1854067 R identified by match to protein family HMM PF00583; acetyltransferase complement(1853201..1854067) Clostridium botulinum A str. Hall 5399954 YP_001387603.1 CDS CLC_1748 NC_009698.1 1854149 1855207 R identified by match to protein family HMM TIGR02906; spore coat protein complement(1854149..1855207) Clostridium botulinum A str. Hall 5400138 YP_001387604.1 CDS CLC_1749 NC_009698.1 1855455 1857371 R these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1855455..1857371) Clostridium botulinum A str. Hall 5398640 YP_001387605.1 CDS cmk NC_009698.1 1857435 1858088 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1857435..1858088) Clostridium botulinum A str. Hall 5401093 YP_001387606.1 CDS aroH NC_009698.1 1858164 1858535 R identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase complement(1858164..1858535) Clostridium botulinum A str. Hall 5401300 YP_001387607.1 CDS CLC_1752 NC_009698.1 1858535 1859758 R identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase complement(1858535..1859758) Clostridium botulinum A str. Hall 5400001 YP_001387608.1 CDS gluD NC_009698.1 1860053 1861318 R identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase complement(1860053..1861318) Clostridium botulinum A str. Hall 5401192 YP_001387609.1 CDS CLC_1754 NC_009698.1 1861553 1862437 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(1861553..1862437) Clostridium botulinum A str. Hall 5401550 YP_001387610.1 CDS rluB NC_009698.1 1862805 1863515 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B complement(1862805..1863515) Clostridium botulinum A str. Hall 5401269 YP_001387611.1 CDS CLC_1756 NC_009698.1 1863978 1865267 R hypothetical protein complement(1863978..1865267) Clostridium botulinum A str. Hall 5401474 YP_001387612.1 CDS CLC_1757 NC_009698.1 1865365 1866645 R identified by match to protein family HMM PF06354; hypothetical protein complement(1865365..1866645) Clostridium botulinum A str. Hall 5398524 YP_001387613.1 CDS CLC_1758 NC_009698.1 1866940 1868343 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(1866940..1868343) Clostridium botulinum A str. Hall 5400224 YP_001387614.1 CDS CLC_1759 NC_009698.1 1868713 1868904 D identified by Glimmer3; hypothetical protein 1868713..1868904 Clostridium botulinum A str. Hall 5399259 YP_001387615.1 CDS CLC_1760 NC_009698.1 1869277 1871298 D identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1869277..1871298 Clostridium botulinum A str. Hall 5400933 YP_001387616.1 CDS CLC_1761 NC_009698.1 1871342 1872028 R identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein complement(1871342..1872028) Clostridium botulinum A str. Hall 5400599 YP_001387617.1 CDS CLC_1762 NC_009698.1 1872030 1872461 R identified by match to protein family HMM PF00085; thioredoxin family protein complement(1872030..1872461) Clostridium botulinum A str. Hall 5401703 YP_001387618.1 CDS CLC_1763 NC_009698.1 1872576 1873412 R identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase complement(1872576..1873412) Clostridium botulinum A str. Hall 5399662 YP_001387619.1 CDS CLC_1764 NC_009698.1 1873543 1874097 R identified by Glimmer3; hypothetical protein complement(1873543..1874097) Clostridium botulinum A str. Hall 5398535 YP_001387620.1 CDS CLC_1765 NC_009698.1 1874509 1875942 D identified by match to protein family HMM PF00999; match to protein family HMM PF02080; monovalent cation:proton antiporter-2 (CPA2) family protein 1874509..1875942 Clostridium botulinum A str. Hall 5400272 YP_001387621.1 CDS pcaC-1 NC_009698.1 1876067 1876411 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; 4-carboxymuconolactone decarboxylase complement(1876067..1876411) Clostridium botulinum A str. Hall 5400564 YP_001387622.1 CDS CLC_1767 NC_009698.1 1876549 1877064 R identified by match to protein family HMM PF00583; acetyltransferase complement(1876549..1877064) Clostridium botulinum A str. Hall 5399795 YP_001387623.1 CDS CLC_1768 NC_009698.1 1877249 1877743 R lipoprotein complement(1877249..1877743) Clostridium botulinum A str. Hall 5398935 YP_001387624.1 CDS CLC_1769 NC_009698.1 1877975 1878286 R identified by match to protein family HMM PF01906; hypothetical protein complement(1877975..1878286) Clostridium botulinum A str. Hall 5400242 YP_001387625.1 CDS CLC_1770 NC_009698.1 1878267 1878500 R identified by Glimmer3; hypothetical protein complement(1878267..1878500) Clostridium botulinum A str. Hall 5401661 YP_001387626.1 CDS CLC_1771 NC_009698.1 1878634 1878876 D identified by similarity to GB:ABA89073.1; hypothetical protein 1878634..1878876 Clostridium botulinum A str. Hall 5401716 YP_001387627.1 CDS CLC_1772 NC_009698.1 1878879 1880603 D identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229; sensory box-containing [Fe] hydrogenase 1878879..1880603 Clostridium botulinum A str. Hall 5400187 YP_001387628.1 CDS CLC_1773 NC_009698.1 1880600 1881769 D identified by match to protein family HMM PF07228; sporulation domain-containing protein 1880600..1881769 Clostridium botulinum A str. Hall 5400069 YP_001387629.1 CDS CLC_1774 NC_009698.1 1881904 1883643 D identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229; sensory box-containing [Fe] hydrogenase 1881904..1883643 Clostridium botulinum A str. Hall 5398357 YP_001387630.1 CDS hypE NC_009698.1 1883996 1885000 R identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE complement(1883996..1885000) Clostridium botulinum A str. Hall 5401003 YP_001387631.1 CDS hypD NC_009698.1 1885168 1886241 R identified by match to protein family HMM PF01924; hydrogenase expression/formation protein HypD complement(1885168..1886241) Clostridium botulinum A str. Hall 5399257 YP_001387632.1 CDS CLC_1777 NC_009698.1 1886234 1886461 R identified by Glimmer3; hypothetical protein complement(1886234..1886461) Clostridium botulinum A str. Hall 5399232 YP_001387633.1 CDS hypF NC_009698.1 1886424 1888862 R identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF complement(1886424..1888862) Clostridium botulinum A str. Hall 5400325 YP_001387634.1 CDS CLC_1779 NC_009698.1 1888846 1889106 R identified by Glimmer3; hypothetical protein complement(1888846..1889106) Clostridium botulinum A str. Hall 5399779 YP_001387635.1 CDS CLC_1780 NC_009698.1 1889361 1889876 R identified by match to protein family HMM PF00173; heme/steroid binding domain-containing protein complement(1889361..1889876) Clostridium botulinum A str. Hall 5398277 YP_001387636.1 CDS CLC_1781 NC_009698.1 1890036 1890452 R identified by match to protein family HMM PF01750; hydrogenase maturation protease complement(1890036..1890452) Clostridium botulinum A str. Hall 5398717 YP_001387637.1 CDS hupL NC_009698.1 1890485 1891900 R identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit complement(1890485..1891900) Clostridium botulinum A str. Hall 5401195 YP_001387638.1 CDS hupS NC_009698.1 1892002 1892874 R identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; [Ni/Fe] hydrogenase, small subunit complement(1892002..1892874) Clostridium botulinum A str. Hall 5401574 YP_001387639.1 CDS CLC_1784 NC_009698.1 1893142 1893843 D identified by match to protein family HMM PF05857; TraX family protein 1893142..1893843 Clostridium botulinum A str. Hall 5401140 YP_001387640.1 CDS CLC_1785 NC_009698.1 1894005 1894292 R identified by Glimmer3; hypothetical protein complement(1894005..1894292) Clostridium botulinum A str. Hall 5399710 YP_001387642.1 CDS CLC_1787 NC_009698.1 1894827 1894994 D identified by Glimmer3; hypothetical protein 1894827..1894994 Clostridium botulinum A str. Hall 5401283 YP_001387643.1 CDS CLC_1788 NC_009698.1 1895885 1896052 D identified by Glimmer3; hypothetical protein 1895885..1896052 Clostridium botulinum A str. Hall 5401667 YP_001387644.1 CDS CLC_1789 NC_009698.1 1896661 1898217 R identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein complement(1896661..1898217) Clostridium botulinum A str. Hall 5399763 YP_001387645.1 CDS CLC_1790 NC_009698.1 1898579 1900312 R identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; [Fe] hydrogenase complement(1898579..1900312) Clostridium botulinum A str. Hall 5400379 YP_001387646.1 CDS CLC_1791 NC_009698.1 1900332 1902227 R identified by match to protein family HMM PF00037; match to protein family HMM PF01512; [Fe] hydrogenase, electron-transfer subunit complement(1900332..1902227) Clostridium botulinum A str. Hall 5399798 YP_001387647.1 CDS CLC_1792 NC_009698.1 1902239 1902718 R identified by match to protein family HMM PF01257; Fe] hydrogenase, electron-transfer subunit complement(1902239..1902718) Clostridium botulinum A str. Hall 5400218 YP_001387648.1 CDS CLC_1793 NC_009698.1 1903194 1904381 R identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein complement(1903194..1904381) Clostridium botulinum A str. Hall 5398879 YP_001387649.1 CDS CLC_1794 NC_009698.1 1904640 1905518 R identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase complement(1904640..1905518) Clostridium botulinum A str. Hall 5398880 YP_001387650.1 CDS CLC_1795 NC_009698.1 1905759 1906853 D identified by match to protein family HMM PF01594; hypothetical protein 1905759..1906853 Clostridium botulinum A str. Hall 5399446 YP_001387651.1 CDS dacB NC_009698.1 1906963 1908099 R identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(1906963..1908099) Clostridium botulinum A str. Hall 5400994 YP_001387652.1 CDS CLC_1797 NC_009698.1 1908333 1908794 D hypothetical protein 1908333..1908794 Clostridium botulinum A str. Hall 5399820 YP_001387653.1 CDS ytfJ NC_009698.1 1908862 1909302 D identified by match to protein family HMM TIGR02874; sporulation protein YtfJ 1908862..1909302 Clostridium botulinum A str. Hall 5398328 YP_001387654.1 CDS scpB NC_009698.1 1909363 1909944 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B complement(1909363..1909944) Clostridium botulinum A str. Hall 5400236 YP_001387655.1 CDS scpA NC_009698.1 1909937 1910683 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(1909937..1910683) Clostridium botulinum A str. Hall 5399300 YP_001387656.1 CDS CLC_1801 NC_009698.1 1910658 1911248 R identified by similarity to PDB:1VFG_A; hypothetical protein complement(1910658..1911248) Clostridium botulinum A str. Hall 5399975 YP_001387657.1 CDS dacF NC_009698.1 1911461 1912684 R identified by match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase complement(1911461..1912684) Clostridium botulinum A str. Hall 5400162 YP_001387658.1 CDS CLC_1803 NC_009698.1 1912807 1913529 R hypothetical protein complement(1912807..1913529) Clostridium botulinum A str. Hall 5401696 YP_001387659.1 CDS CLC_1804 NC_009698.1 1913688 1914746 R identified by match to protein family HMM PF03372; hypothetical protein complement(1913688..1914746) Clostridium botulinum A str. Hall 5398442 YP_001387660.1 CDS CLC_1805 NC_009698.1 1914888 1915136 R hypothetical protein complement(1914888..1915136) Clostridium botulinum A str. Hall 5401778 YP_001387661.1 CDS pdp NC_009698.1 1915243 1916547 R identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase complement(1915243..1916547) Clostridium botulinum A str. Hall 5398261 YP_001387662.1 CDS punA NC_009698.1 1916833 1917648 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(1916833..1917648) Clostridium botulinum A str. Hall 5400343 YP_001387663.1 CDS xerD NC_009698.1 1917686 1918561 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD complement(1917686..1918561) Clostridium botulinum A str. Hall 5399759 YP_001387664.1 CDS CLC_1809 NC_009698.1 1918613 1918840 R identified by similarity to GB:AAK80026.1; hypothetical protein complement(1918613..1918840) Clostridium botulinum A str. Hall 5400799 YP_001387665.1 CDS CLC_1810 NC_009698.1 1918831 1919484 R identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831; sporulation protein complement(1918831..1919484) Clostridium botulinum A str. Hall 5401544 YP_001387666.1 CDS CLC_1811 NC_009698.1 1919689 1920225 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX family hydrolase complement(1919689..1920225) Clostridium botulinum A str. Hall 5400583 YP_001387667.1 CDS CLC_1812 NC_009698.1 1920709 1922235 R identified by match to protein family HMM PF00324; amino acid permease complement(1920709..1922235) Clostridium botulinum A str. Hall 5401653 YP_001387668.1 CDS CLC_1813 NC_009698.1 1922786 1923544 R identified by match to protein family HMM PF00877; nlpC/P60 family protein complement(1922786..1923544) Clostridium botulinum A str. Hall 5401484 YP_001387669.1 CDS CLC_1814 NC_009698.1 1925029 1925643 R identified by Glimmer3; hypothetical protein complement(1925029..1925643) Clostridium botulinum A str. Hall 5401293 YP_001387670.1 CDS CLC_1815 NC_009698.1 1925779 1926573 R identified by match to protein family HMM PF00589; phage integrase site specific recombinase complement(1925779..1926573) Clostridium botulinum A str. Hall 5400385 YP_001387671.1 CDS spo0A NC_009698.1 1926860 1927681 R identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875; sporulation transcription factor Spo0A complement(1926860..1927681) Clostridium botulinum A str. Hall 5399615 YP_001387672.1 CDS spoIVB NC_009698.1 1928111 1929337 R identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860; stage IV sporulation protein B complement(1928111..1929337) Clostridium botulinum A str. Hall 5400644 YP_001387673.1 CDS metA NC_009698.1 1929759 1930655 R identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001; homoserine O-succinyltransferase complement(1929759..1930655) Clostridium botulinum A str. Hall 5399014 YP_001387674.1 CDS hom-2 NC_009698.1 1930682 1931908 R identified by match to protein family HMM PF00742; match to protein family HMM PF03447; homoserine dehydrogenase complement(1930682..1931908) Clostridium botulinum A str. Hall 5400854 YP_001387675.1 CDS CLC_1820 NC_009698.1 1931948 1933228 R identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase complement(1931948..1933228) Clostridium botulinum A str. Hall 5398755 YP_001387676.1 CDS recN NC_009698.1 1933527 1935230 R identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein recN complement(1933527..1935230) Clostridium botulinum A str. Hall 5398562 YP_001387677.1 CDS argR NC_009698.1 1935243 1935695 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR complement(1935243..1935695) Clostridium botulinum A str. Hall 5401477 YP_001387678.1 CDS ppnK NC_009698.1 1935697 1936542 R identified by match to protein family HMM PF01513; ATP-NAD kinase complement(1935697..1936542) Clostridium botulinum A str. Hall 5399195 YP_001387679.1 CDS CLC_1824 NC_009698.1 1936542 1937363 R identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A complement(1936542..1937363) Clostridium botulinum A str. Hall 5398682 YP_001387680.1 CDS dxs NC_009698.1 1937385 1939253 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1937385..1939253) Clostridium botulinum A str. Hall 5401253 YP_001387681.1 CDS CLC_1826 NC_009698.1 1939254 1939823 R hypothetical protein complement(1939254..1939823) Clostridium botulinum A str. Hall 5401270 YP_001387682.1 CDS ispA NC_009698.1 1940624 1941496 R identified by match to protein family HMM PF00348; geranyltranstransferase complement(1940624..1941496) Clostridium botulinum A str. Hall 5398422 YP_001387683.1 CDS xseB NC_009698.1 1941621 1941836 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1941621..1941836) Clostridium botulinum A str. Hall 5398243 YP_001387684.1 CDS xseA NC_009698.1 1941959 1943164 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1941959..1943164) Clostridium botulinum A str. Hall 5401321 YP_001387685.1 CDS nusB NC_009698.1 1943235 1943666 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1943235..1943666) Clostridium botulinum A str. Hall 5400140 YP_001387686.1 CDS asp NC_009698.1 1943805 1944200 R identified by match to protein family HMM PF03780; alkaline shock protein complement(1943805..1944200) Clostridium botulinum A str. Hall 5400211 YP_001387687.1 CDS CLC_1832 NC_009698.1 1944282 1944806 R stage III sporulation protein AH complement(1944282..1944806) Clostridium botulinum A str. Hall 5401603 YP_001387688.1 CDS CLC_1833 NC_009698.1 1944868 1945464 R identified by match to protein family HMM TIGR02830; stage III sporulation protein AG complement(1944868..1945464) Clostridium botulinum A str. Hall 5398272 YP_001387689.1 CDS spoIIIAF NC_009698.1 1945602 1946192 R identified by match to protein family HMM TIGR02896; stage III sporulation protein AF complement(1945602..1946192) Clostridium botulinum A str. Hall 5401182 YP_001387690.1 CDS CLC_1835 NC_009698.1 1946228 1947391 R identified by match to protein family HMM TIGR02829; stage III sporulation protein AE complement(1946228..1947391) Clostridium botulinum A str. Hall 5399666 YP_001387691.1 CDS CLC_1836 NC_009698.1 1947400 1947783 R identified by match to protein family HMM TIGR02849; stage III sporulation protein AD complement(1947400..1947783) Clostridium botulinum A str. Hall 5400136 YP_001387692.1 CDS CLC_1837 NC_009698.1 1947810 1948007 R identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848; stage III sporulation protein AC complement(1947810..1948007) Clostridium botulinum A str. Hall 5398761 YP_001387693.1 CDS CLC_1838 NC_009698.1 1948050 1948568 R necessary for complete engulfment of forespore; stage III sporulation protein SpoAB complement(1948050..1948568) Clostridium botulinum A str. Hall 5400066 YP_001387694.1 CDS CLC_1839 NC_009698.1 1948605 1949528 R identified by match to protein family HMM TIGR02858; stage III sporulation protein AA complement(1948605..1949528) Clostridium botulinum A str. Hall 5401593 YP_001387695.1 CDS CLC_1840 NC_009698.1 1949723 1950142 R hypothetical protein complement(1949723..1950142) Clostridium botulinum A str. Hall 5400769 YP_001387696.1 CDS efp NC_009698.1 1950183 1950740 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1950183..1950740) Clostridium botulinum A str. Hall 5399852 YP_001387697.1 CDS aroQ NC_009698.1 1950829 1951272 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(1950829..1951272) Clostridium botulinum A str. Hall 5400955 YP_001387698.1 CDS aroK NC_009698.1 1951427 1951939 R identified by match to protein family HMM PF01202; shikimate kinase complement(1951427..1951939) Clostridium botulinum A str. Hall 5401294 YP_001387699.1 CDS CLC_1844 NC_009698.1 1952073 1952567 R hypothetical protein complement(1952073..1952567) Clostridium botulinum A str. Hall 5400405 YP_001387700.1 CDS CLC_1845 NC_009698.1 1952573 1953019 R identified by Glimmer3; hypothetical protein complement(1952573..1953019) Clostridium botulinum A str. Hall 5399365 YP_001387701.1 CDS CLC_1846 NC_009698.1 1953035 1953724 R hypothetical protein complement(1953035..1953724) Clostridium botulinum A str. Hall 5399052 YP_001387702.1 CDS CLC_1847 NC_009698.1 1953752 1954198 R lipoprotein complement(1953752..1954198) Clostridium botulinum A str. Hall 5401478 YP_001387703.1 CDS CLC_1848 NC_009698.1 1954177 1954617 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein complement(1954177..1954617) Clostridium botulinum A str. Hall 5399970 YP_001387704.1 CDS CLC_1849 NC_009698.1 1954614 1955060 R identified by match to protein family HMM TIGR02532; hypothetical protein complement(1954614..1955060) Clostridium botulinum A str. Hall 5401832 YP_001387705.1 CDS CLC_1850 NC_009698.1 1955041 1955493 R hypothetical protein complement(1955041..1955493) Clostridium botulinum A str. Hall 5400216 YP_001387706.1 CDS CLC_1851 NC_009698.1 1955895 1956299 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin complement(1955895..1956299) Clostridium botulinum A str. Hall 5400719 YP_001387707.1 CDS CLC_1852 NC_009698.1 1956485 1957675 R identified by match to protein family HMM PF00482; type II secretion system protein F complement(1956485..1957675) Clostridium botulinum A str. Hall 5400600 YP_001387708.1 CDS CLC_1853 NC_009698.1 1957820 1959349 R identified by match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E complement(1957820..1959349) Clostridium botulinum A str. Hall 5400161 YP_001387710.1 CDS CLC_1855 NC_009698.1 1959722 1960795 R lipoprotein complement(1959722..1960795) Clostridium botulinum A str. Hall 5398465 YP_001387711.1 CDS dapF NC_009698.1 1960796 1961617 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(1960796..1961617) Clostridium botulinum A str. Hall 5400297 YP_001387712.1 CDS CLC_1857 NC_009698.1 1961871 1963601 D identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 1961871..1963601 Clostridium botulinum A str. Hall 5398505 YP_001387713.1 CDS truA-1 NC_009698.1 1963670 1964410 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1963670..1964410 Clostridium botulinum A str. Hall 5400860 YP_001387714.1 CDS CLC_1859 NC_009698.1 1964687 1964914 R identified by Glimmer3; hypothetical protein complement(1964687..1964914) Clostridium botulinum A str. Hall 5401712 YP_001387715.1 CDS CLC_1860 NC_009698.1 1964950 1965327 R identified by match to protein family HMM PF01230; HIT family protein complement(1964950..1965327) Clostridium botulinum A str. Hall 5399773 YP_001387716.1 CDS CLC_1861 NC_009698.1 1965838 1967241 D identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; glutamate decarboxylase 1965838..1967241 Clostridium botulinum A str. Hall 5400624 YP_001387717.1 CDS CLC_1862 NC_009698.1 1967674 1968015 R identified by Glimmer3; hypothetical protein complement(1967674..1968015) Clostridium botulinum A str. Hall 5399563 YP_001387718.1 CDS CLC_1863 NC_009698.1 1968520 1970229 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(1968520..1970229) Clostridium botulinum A str. Hall 5401663 YP_001387719.1 CDS cloSI NC_009698.1 1970699 1972273 R identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806; clostripain complement(1970699..1972273) Clostridium botulinum A str. Hall 5400073 YP_001387720.1 CDS CLC_1865 NC_009698.1 1972753 1973409 D hypothetical protein 1972753..1973409 Clostridium botulinum A str. Hall 5400923 YP_001387721.1 CDS CLC_1866 NC_009698.1 1973411 1974112 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1973411..1974112 Clostridium botulinum A str. Hall 5399003 YP_001387722.1 CDS CLC_1867 NC_009698.1 1974102 1976015 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1974102..1976015 Clostridium botulinum A str. Hall 5400204 YP_001387723.1 CDS msrA NC_009698.1 1976186 1976659 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1976186..1976659) Clostridium botulinum A str. Hall 5399299 YP_001387724.1 CDS CLC_1869 NC_009698.1 1977049 1977840 D identified by match to protein family HMM PF00072; response regulator 1977049..1977840 Clostridium botulinum A str. Hall 5399202 YP_001387725.1 CDS CLC_1870 NC_009698.1 1978000 1979463 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1978000..1979463) Clostridium botulinum A str. Hall 5398995 YP_001387726.1 CDS CLC_1871 NC_009698.1 1979460 1980146 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1979460..1980146) Clostridium botulinum A str. Hall 5401032 YP_001387727.2 CDS CLC_1872 NC_009698.1 1980429 1981205 R membrane protein complement(1980429..1981205) Clostridium botulinum A str. Hall 5398555 YP_001387728.1 CDS CLC_1873 NC_009698.1 1981361 1982212 R ABC transporter permease complement(1981361..1982212) Clostridium botulinum A str. Hall 5401173 YP_001387729.1 CDS CLC_1874 NC_009698.1 1982212 1982955 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1982212..1982955) Clostridium botulinum A str. Hall 5400370 YP_001387731.1 CDS CLC_1876 NC_009698.1 1983545 1985407 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1983545..1985407) Clostridium botulinum A str. Hall 5399078 YP_001387732.1 CDS CLC_1877 NC_009698.1 1985404 1987731 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(1985404..1987731) Clostridium botulinum A str. Hall 5401151 YP_001387733.1 CDS CLC_1878 NC_009698.1 1988135 1988578 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1988135..1988578 Clostridium botulinum A str. Hall 5400348 YP_001387734.1 CDS moeB NC_009698.1 1988890 1989573 R identified by match to protein family HMM PF00899; molybdopterin biosynthesis protein MoeB complement(1988890..1989573) Clostridium botulinum A str. Hall 5398684 YP_001387735.1 CDS moaD NC_009698.1 1989575 1989802 R identified by match to protein family HMM PF02597; molybdopterin converting factor subunit 1 complement(1989575..1989802) Clostridium botulinum A str. Hall 5398921 YP_001387736.1 CDS aor NC_009698.1 1989955 1991772 R identified by match to protein family HMM PF01314; match to protein family HMM PF02730; aldehyde ferredoxin oxidoreductase complement(1989955..1991772) Clostridium botulinum A str. Hall 5400593 YP_001387737.1 CDS aorR NC_009698.1 1992181 1994076 R identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229; aor transcriptional regulator complement(1992181..1994076) Clostridium botulinum A str. Hall 5398823 YP_001387738.1 CDS CLC_1883 NC_009698.1 1994126 1994566 R identified by match to protein family HMM PF03473; MOSC domain-containing protein complement(1994126..1994566) Clostridium botulinum A str. Hall 5399127 YP_001387739.1 CDS moaC NC_009698.1 1994568 1995047 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(1994568..1995047) Clostridium botulinum A str. Hall 5399881 YP_001387740.1 CDS moaA NC_009698.1 1995051 1996010 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(1995051..1996010) Clostridium botulinum A str. Hall 5400261 YP_001387741.1 CDS CLC_1886 NC_009698.1 1996069 1997973 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; LysR family transcriptional regulator complement(1996069..1997973) Clostridium botulinum A str. Hall 5398623 YP_001387742.1 CDS moeA NC_009698.1 1997985 1999211 R identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme MoeA complement(1997985..1999211) Clostridium botulinum A str. Hall 5398962 YP_001387743.1 CDS mog NC_009698.1 1999235 1999723 R identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme Mog complement(1999235..1999723) Clostridium botulinum A str. Hall 5400516 YP_001387744.1 CDS tupC NC_009698.1 1999818 2000510 R identified by match to protein family HMM PF00005; tungstate ABC transporter ATP-binding protein complement(1999818..2000510) Clostridium botulinum A str. Hall 5401463 YP_001387745.1 CDS tupB NC_009698.1 2000507 2001178 R identified by match to protein family HMM PF00528; tungstate ABC transporter permease complement(2000507..2001178) Clostridium botulinum A str. Hall 5401608 YP_001387746.1 CDS CLC_1891 NC_009698.1 2001187 2002038 R identified by match to protein family HMM PF01547; tungstate ABC transporter tungstate-binding protein complement(2001187..2002038) Clostridium botulinum A str. Hall 5400227 YP_001387747.1 CDS CLC_1892 NC_009698.1 2002257 2003579 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(2002257..2003579) Clostridium botulinum A str. Hall 5400821 YP_001387748.1 CDS CLC_1893 NC_009698.1 2003579 2003776 R identified by Glimmer3; hypothetical protein complement(2003579..2003776) Clostridium botulinum A str. Hall 5398264 YP_001387749.1 CDS CLC_1894 NC_009698.1 2004017 2004661 R identified by match to protein family HMM PF09335; hypothetical protein complement(2004017..2004661) Clostridium botulinum A str. Hall 5401483 YP_001387750.1 CDS CLC_1895 NC_009698.1 2004983 2005654 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2004983..2005654) Clostridium botulinum A str. Hall 5399424 YP_001387751.1 CDS CLC_1896 NC_009698.1 2005669 2007132 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2005669..2007132) Clostridium botulinum A str. Hall 5399580 YP_001387752.1 CDS CLC_1897 NC_009698.1 2007468 2007611 D identified by Glimmer3; hypothetical protein 2007468..2007611 Clostridium botulinum A str. Hall 5399959 YP_001387753.1 CDS CLC_1898 NC_009698.1 2007931 2009688 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2007931..2009688) Clostridium botulinum A str. Hall 5399205 YP_001387754.1 CDS CLC_1899 NC_009698.1 2009685 2011415 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2009685..2011415) Clostridium botulinum A str. Hall 5400440 YP_001387755.1 CDS CLC_1900 NC_009698.1 2011530 2012351 D identified by match to protein family HMM PF00376; ABC transporter 2011530..2012351 Clostridium botulinum A str. Hall 5398392 YP_001387756.1 CDS CLC_1901 NC_009698.1 2012770 2013396 D identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 2012770..2013396 Clostridium botulinum A str. Hall 5399972 YP_001387757.1 CDS CLC_1902 NC_009698.1 2014690 2015688 D identified by match to protein family HMM PF00560; internalin 2014690..2015688 Clostridium botulinum A str. Hall 5400243 YP_001387758.1 CDS CLC_1903 NC_009698.1 2015710 2017758 D identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296; carbohydrate binding protein 2015710..2017758 Clostridium botulinum A str. Hall 5398987 YP_001387759.1 CDS CLC_1904 NC_009698.1 2017920 2020010 R identified by match to protein family HMM PF00158; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator complement(2017920..2020010) Clostridium botulinum A str. Hall 5399466 YP_001387760.1 CDS CLC_1905 NC_009698.1 2020373 2020627 R hypothetical protein complement(2020373..2020627) Clostridium botulinum A str. Hall 5398982 YP_001387761.1 CDS CLC_1906 NC_009698.1 2020640 2021008 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(2020640..2021008) Clostridium botulinum A str. Hall 5398300 YP_001387762.1 CDS CLC_1907 NC_009698.1 2021050 2022345 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(2021050..2022345) Clostridium botulinum A str. Hall 5399049 YP_001387763.1 CDS CLC_1908 NC_009698.1 2022367 2023536 R identified by match to protein family HMM PF00155; aminotransferase, classes I and II complement(2022367..2023536) Clostridium botulinum A str. Hall 5401589 YP_001387764.1 CDS CLC_1909 NC_009698.1 2023850 2025142 D identified by match to protein family HMM PF06354; hypothetical protein 2023850..2025142 Clostridium botulinum A str. Hall 5399793 YP_001387766.1 CDS CLC_1912 NC_009698.1 2026500 2028719 D identified by match to protein family HMM TIGR03296; hypothetical protein 2026500..2028719 Clostridium botulinum A str. Hall 5399713 YP_001387767.1 CDS CLC_1913 NC_009698.1 2028920 2030359 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2028920..2030359) Clostridium botulinum A str. Hall 5398992 YP_001387768.1 CDS CLC_1914 NC_009698.1 2030349 2031014 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2030349..2031014) Clostridium botulinum A str. Hall 5401625 YP_001387770.1 CDS CLC_1916 NC_009698.1 2031514 2032329 R identified by match to protein family HMM PF02596; hypothetical protein complement(2031514..2032329) Clostridium botulinum A str. Hall 5398271 YP_001387771.1 CDS CLC_1917 NC_009698.1 2032355 2033080 R identified by match to protein family HMM PF02361; ABC transporter permease complement(2032355..2033080) Clostridium botulinum A str. Hall 5399741 YP_001387772.1 CDS CLC_1918 NC_009698.1 2033125 2034558 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2033125..2034558) Clostridium botulinum A str. Hall 5400133 YP_001387773.1 CDS CLC_1919 NC_009698.1 2034561 2035127 R ABC transporter permease complement(2034561..2035127) Clostridium botulinum A str. Hall 5401837 YP_001387774.1 CDS CLC_1920 NC_009698.1 2035288 2036355 R identified by match to protein family HMM PF01168; alanine racemase complement(2035288..2036355) Clostridium botulinum A str. Hall 5399985 YP_001387775.1 CDS CLC_1921 NC_009698.1 2036744 2037829 D identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2036744..2037829 Clostridium botulinum A str. Hall 5400839 YP_001387776.1 CDS CLC_1922 NC_009698.1 2037912 2039414 D identified by match to protein family HMM PF03323; spore germination protein 2037912..2039414 Clostridium botulinum A str. Hall 5401355 YP_001387777.1 CDS CLC_1923 NC_009698.1 2039404 2040492 D identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2039404..2040492 Clostridium botulinum A str. Hall 5398838 YP_001387778.1 CDS CLC_1924 NC_009698.1 2040482 2041594 D identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; Ger(x)C family germination protein 2040482..2041594 Clostridium botulinum A str. Hall 5400265 YP_001387779.1 CDS CLC_1925 NC_009698.1 2041636 2042745 D identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2041636..2042745 Clostridium botulinum A str. Hall 5400132 YP_001387780.1 CDS CLC_1926 NC_009698.1 2042773 2043201 R identified by match to protein family HMM TIGR01909; hypothetical protein complement(2042773..2043201) Clostridium botulinum A str. Hall 5399433 YP_001387781.1 CDS pcaC-2 NC_009698.1 2043496 2043828 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; 4-carboxymuconolactone decarboxylase 2043496..2043828 Clostridium botulinum A str. Hall 5400184 YP_001387782.1 CDS CLC_1928 NC_009698.1 2043841 2044821 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2043841..2044821 Clostridium botulinum A str. Hall 5401243 YP_001387783.1 CDS CLC_1929 NC_009698.1 2045002 2045757 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2045002..2045757 Clostridium botulinum A str. Hall 5398955 YP_001387784.1 CDS CLC_1930 NC_009698.1 2045975 2047405 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(2045975..2047405) Clostridium botulinum A str. Hall 5401831 YP_001387785.1 CDS hsp90 NC_009698.1 2048003 2049883 R molecular chaperone; heat shock protein 90 complement(2048003..2049883) Clostridium botulinum A str. Hall 5399100 YP_001387786.1 CDS CLC_1932 NC_009698.1 2050428 2051993 D identified by match to protein family HMM PF00488; MutS domain-containing protein 2050428..2051993 Clostridium botulinum A str. Hall 5401821 YP_001387787.1 CDS treP NC_009698.1 2052475 2053902 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 2052475..2053902 Clostridium botulinum A str. Hall 5400054 YP_001387788.1 CDS treC NC_009698.1 2053984 2055651 D identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 2053984..2055651 Clostridium botulinum A str. Hall 5398785 YP_001387789.1 CDS treR NC_009698.1 2055684 2056394 D identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 2055684..2056394 Clostridium botulinum A str. Hall 5401339 YP_001387790.1 CDS CLC_1936 NC_009698.1 2056756 2057196 R identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848; PTS system fructose family transporter subunit IIA complement(2056756..2057196) Clostridium botulinum A str. Hall 5401723 YP_001387791.1 CDS CLC_1937 NC_009698.1 2057469 2058866 R identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; PTS system fructose family transporter subunit IIBC complement(2057469..2058866) Clostridium botulinum A str. Hall 5401747 YP_001387792.1 CDS CLC_1938 NC_009698.1 2058867 2059790 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; PfkB family kinase complement(2058867..2059790) Clostridium botulinum A str. Hall 5399632 YP_001387793.1 CDS gatY NC_009698.1 2059810 2060670 R catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase complement(2059810..2060670) Clostridium botulinum A str. Hall 5399577 YP_001387794.1 CDS CLC_1940 NC_009698.1 2060870 2061607 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator complement(2060870..2061607) Clostridium botulinum A str. Hall 5400906 YP_008472689.1 CDS CLC_1941 NC_009698.1 2061724 2062098 R hypothetical protein complement(2061724..2062098) Clostridium botulinum A str. Hall 5401823 YP_001387795.1 CDS CLC_1942 NC_009698.1 2062460 2062855 D identified by match to protein family HMM PF01042; endoribonuclease L-PSP 2062460..2062855 Clostridium botulinum A str. Hall 5401206 YP_001387796.1 CDS CLC_1943 NC_009698.1 2063203 2064072 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2063203..2064072) Clostridium botulinum A str. Hall 5399655 YP_001387798.1 CDS gldA NC_009698.1 2064648 2065739 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 2064648..2065739 Clostridium botulinum A str. Hall 5399875 YP_001387800.1 CDS CLC_1947 NC_009698.1 2066231 2067880 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2066231..2067880) Clostridium botulinum A str. Hall 5401697 YP_001387801.1 CDS CLC_1948 NC_009698.1 2067874 2067987 R identified by Glimmer3; hypothetical protein complement(2067874..2067987) Clostridium botulinum A str. Hall 5398827 YP_001387802.1 CDS CLC_1949 NC_009698.1 2068052 2069113 R identified by match to protein family HMM PF01168; alanine racemase complement(2068052..2069113) Clostridium botulinum A str. Hall 5399936 YP_001387803.1 CDS CLC_1950 NC_009698.1 2069470 2069748 R hypothetical protein complement(2069470..2069748) Clostridium botulinum A str. Hall 5399430 YP_001387804.1 CDS CLC_1951 NC_009698.1 2070218 2071282 D identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 2070218..2071282 Clostridium botulinum A str. Hall 5401425 YP_001387805.1 CDS CLC_1952 NC_009698.1 2071403 2071948 R Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase complement(2071403..2071948) Clostridium botulinum A str. Hall 5400482 YP_001387806.1 CDS CLC_1953 NC_009698.1 2071964 2073028 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(2071964..2073028) Clostridium botulinum A str. Hall 5401678 YP_001387807.1 CDS CLC_1954 NC_009698.1 2073471 2074019 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2073471..2074019) Clostridium botulinum A str. Hall 5398251 YP_001387808.1 CDS CLC_1955 NC_009698.1 2074253 2075557 R identified by match to protein family HMM PF06354; hypothetical protein complement(2074253..2075557) Clostridium botulinum A str. Hall 5400611 YP_001387809.1 CDS CLC_1956 NC_009698.1 2075817 2077592 R identified by match to protein family HMM PF00158; sigma-54 dependent transcriptional regulator complement(2075817..2077592) Clostridium botulinum A str. Hall 5400005 YP_001387810.1 CDS CLC_1957 NC_009698.1 2078058 2079188 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 2078058..2079188 Clostridium botulinum A str. Hall 5398860 YP_001387811.1 CDS CLC_1958 NC_009698.1 2079508 2080305 D identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909; SCP-like extracellular protein 2079508..2080305 Clostridium botulinum A str. Hall 5401651 YP_001387812.1 CDS CLC_1959 NC_009698.1 2080408 2081754 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2080408..2081754) Clostridium botulinum A str. Hall 5401390 YP_001387813.1 CDS CLC_1960 NC_009698.1 2081903 2082811 D identified by match to protein family HMM PF00892; hypothetical protein 2081903..2082811 Clostridium botulinum A str. Hall 5400202 YP_001387814.1 CDS aspB-2 NC_009698.1 2083109 2084260 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2083109..2084260) Clostridium botulinum A str. Hall 5400039 YP_001387815.1 CDS CLC_1962 NC_009698.1 2084280 2085002 R identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein complement(2084280..2085002) Clostridium botulinum A str. Hall 5399676 YP_008472690.1 CDS CLC_1963A NC_009698.1 2084989 2085675 R amino acid ABC transporter permease complement(2084989..2085675) Clostridium botulinum A str. Hall 16691481 YP_008472691.1 CDS CLC_1963B NC_009698.1 2085745 2086563 R amino acid ABC transporter complement(2085745..2086563) Clostridium botulinum A str. Hall 16691472 YP_001387816.1 CDS CLC_1964 NC_009698.1 2086649 2087929 R hypothetical protein complement(2086649..2087929) Clostridium botulinum A str. Hall 5399578 YP_001387817.1 CDS CLC_1965 NC_009698.1 2088294 2089433 R identified by match to protein family HMM PF00266; class V aminotransferase complement(2088294..2089433) Clostridium botulinum A str. Hall 5400916 YP_001387818.1 CDS cat-2 NC_009698.1 2089546 2090211 R identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase complement(2089546..2090211) Clostridium botulinum A str. Hall 5398985 YP_001387819.1 CDS CLC_1967 NC_009698.1 2090706 2090918 R hypothetical protein complement(2090706..2090918) Clostridium botulinum A str. Hall 5399500 YP_001387821.1 CDS CLC_1969 NC_009698.1 2091179 2091400 R hypothetical protein complement(2091179..2091400) Clostridium botulinum A str. Hall 5398234 YP_008472692.1 CDS CLC_1970 NC_009698.1 2091538 2091789 R helicase complement(2091538..2091789) Clostridium botulinum A str. Hall 5398969 YP_001387822.1 CDS CLC_1971 NC_009698.1 2091973 2092689 R hypothetical protein complement(2091973..2092689) Clostridium botulinum A str. Hall 5399381 YP_001387823.1 CDS CLC_1972 NC_009698.1 2092914 2093069 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2092914..2093069) Clostridium botulinum A str. Hall 5401414 YP_001387825.1 CDS CLC_1974 NC_009698.1 2093479 2094828 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter complement(2093479..2094828) Clostridium botulinum A str. Hall 5399598 YP_001387826.1 CDS CLC_1975 NC_009698.1 2095139 2096485 R identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter complement(2095139..2096485) Clostridium botulinum A str. Hall 5401701 YP_001387827.1 CDS pepQ NC_009698.1 2096994 2098082 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; proline dipeptidase 2096994..2098082 Clostridium botulinum A str. Hall 5400155 YP_001387828.1 CDS pepIP NC_009698.1 2098164 2099045 D identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; proline iminopeptidase 2098164..2099045 Clostridium botulinum A str. Hall 5400313 YP_001387829.1 CDS CLC_1978 NC_009698.1 2099195 2099320 R identified by Glimmer3; hypothetical protein complement(2099195..2099320) Clostridium botulinum A str. Hall 5400165 YP_001387830.1 CDS CLC_1979 NC_009698.1 2099337 2100830 R identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein complement(2099337..2100830) Clostridium botulinum A str. Hall 5400244 YP_001387831.1 CDS CLC_1980 NC_009698.1 2101239 2102633 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(2101239..2102633) Clostridium botulinum A str. Hall 5401385 YP_001387832.1 CDS CLC_1981 NC_009698.1 2102751 2103530 D identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 2102751..2103530 Clostridium botulinum A str. Hall 5398356 YP_008472693.1 CDS CLC_1982 NC_009698.1 2103615 2104016 D LysR family transcriptional regulator 2103615..2104016 Clostridium botulinum A str. Hall 5399159 YP_001387833.1 CDS CLC_1983 NC_009698.1 2104126 2104773 R identified by Glimmer3; hypothetical protein complement(2104126..2104773) Clostridium botulinum A str. Hall 5399967 YP_001387834.1 CDS CLC_1984 NC_009698.1 2105006 2107483 R thrombospondin type 3 repeat-containing protein complement(2105006..2107483) Clostridium botulinum A str. Hall 5399857 YP_001387835.1 CDS CLC_1985 NC_009698.1 2107956 2108456 R identified by match to protein family HMM PF00881; nitroreductase complement(2107956..2108456) Clostridium botulinum A str. Hall 5399696 YP_001387836.1 CDS CLC_1986 NC_009698.1 2108561 2110504 R identified by Glimmer3; hypothetical protein complement(2108561..2110504) Clostridium botulinum A str. Hall 5398276 YP_001387837.1 CDS CLC_1987 NC_009698.1 2110519 2111754 R identified by Glimmer3; hypothetical protein complement(2110519..2111754) Clostridium botulinum A str. Hall 5398417 YP_001387838.1 CDS CLC_1988 NC_009698.1 2111751 2113862 R hypothetical protein complement(2111751..2113862) Clostridium botulinum A str. Hall 5398641 YP_001387839.1 CDS CLC_1989 NC_009698.1 2113984 2115777 R similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein complement(2113984..2115777) Clostridium botulinum A str. Hall 5398365 YP_001387840.1 CDS CLC_1990 NC_009698.1 2116081 2116650 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2116081..2116650) Clostridium botulinum A str. Hall 5398282 YP_003204971.1 CDS CLC_1991 NC_009698.1 2116826 2117269 R hypothetical protein complement(2116826..2117269) Clostridium botulinum A str. Hall 5399330 YP_008472694.1 CDS CLC_1994 NC_009698.1 2118236 2119729 D glycosyl transferase 2118236..2119729 Clostridium botulinum A str. Hall 5401804 YP_001387843.1 CDS CLC_1995 NC_009698.1 2120189 2121250 R identified by Glimmer3; hypothetical protein complement(2120189..2121250) Clostridium botulinum A str. Hall 5399821 YP_001387844.1 CDS CLC_1996 NC_009698.1 2121294 2121938 R identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase complement(2121294..2121938) Clostridium botulinum A str. Hall 5399614 YP_001387845.1 CDS CLC_1997 NC_009698.1 2122030 2123169 R identified by match to protein family HMM PF01041; aminotransferase complement(2122030..2123169) Clostridium botulinum A str. Hall 5400679 YP_001387846.1 CDS CLC_1998 NC_009698.1 2123215 2124114 R identified by Glimmer3; hypothetical protein complement(2123215..2124114) Clostridium botulinum A str. Hall 5398774 YP_001387847.1 CDS CLC_1999 NC_009698.1 2124316 2125377 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208; glucose-1-phosphate thymidylyltransferase 2124316..2125377 Clostridium botulinum A str. Hall 5401228 YP_001387848.1 CDS rfbB NC_009698.1 2125419 2126399 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 2125419..2126399 Clostridium botulinum A str. Hall 5400078 YP_001387849.1 CDS CLC_2001 NC_009698.1 2126676 2126969 D hypothetical protein 2126676..2126969 Clostridium botulinum A str. Hall 5400500 YP_001387850.1 CDS CLC_2002 NC_009698.1 2127220 2127513 D hypothetical protein 2127220..2127513 Clostridium botulinum A str. Hall 5401236 YP_001387852.1 CDS CLC_2004 NC_009698.1 2128409 2128558 R identified by Glimmer3; hypothetical protein complement(2128409..2128558) Clostridium botulinum A str. Hall 5400108 YP_001387853.1 CDS CLC_2005 NC_009698.1 2128551 2129840 R lipase complement(2128551..2129840) Clostridium botulinum A str. Hall 5401803 YP_001387854.1 CDS CLC_2006 NC_009698.1 2130691 2131365 R identified by match to protein family HMM PF04892; vanZF protein complement(2130691..2131365) Clostridium botulinum A str. Hall 5399414 YP_001387855.1 CDS CLC_2007 NC_009698.1 2131615 2131881 R identified by Glimmer3; hypothetical protein complement(2131615..2131881) Clostridium botulinum A str. Hall 5400335 YP_001387856.1 CDS CLC_2008 NC_009698.1 2132149 2132790 R ABC transporter permease complement(2132149..2132790) Clostridium botulinum A str. Hall 5398868 YP_001387857.1 CDS CLC_2009 NC_009698.1 2132784 2133650 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2132784..2133650) Clostridium botulinum A str. Hall 5401788 YP_001387858.1 CDS CLC_2010 NC_009698.1 2133650 2134027 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2133650..2134027) Clostridium botulinum A str. Hall 5398596 YP_001387859.1 CDS CLC_2011 NC_009698.1 2134655 2135839 R identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426; glycosyl transferase family protein complement(2134655..2135839) Clostridium botulinum A str. Hall 5399998 YP_001387860.1 CDS CLC_2012 NC_009698.1 2135832 2136137 R identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator complement(2135832..2136137) Clostridium botulinum A str. Hall 5400701 YP_001387861.1 CDS CLC_2013 NC_009698.1 2136386 2137183 R hypothetical protein complement(2136386..2137183) Clostridium botulinum A str. Hall 5400824 YP_001387862.1 CDS codA NC_009698.1 2137495 2138760 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(2137495..2138760) Clostridium botulinum A str. Hall 5398286 YP_001387863.1 CDS codB NC_009698.1 2138804 2140075 R identified by match to protein family HMM PF02133; cytosine permease complement(2138804..2140075) Clostridium botulinum A str. Hall 5399757 YP_001387864.1 CDS CLC_2017 NC_009698.1 2140420 2140551 R identified by Glimmer3; hypothetical protein complement(2140420..2140551) Clostridium botulinum A str. Hall 5400985 YP_001387867.1 CDS CLC_2020 NC_009698.1 2142749 2144212 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2142749..2144212) Clostridium botulinum A str. Hall 5399261 YP_001387868.1 CDS CLC_2021 NC_009698.1 2144226 2144951 R identified by match to protein family HMM PF02361; ABC transporter permease complement(2144226..2144951) Clostridium botulinum A str. Hall 5400239 YP_001387869.1 CDS CLC_2022 NC_009698.1 2144948 2145559 R identified by match to protein family HMM TIGR02185; hypothetical protein complement(2144948..2145559) Clostridium botulinum A str. Hall 5401533 YP_001387870.1 CDS CLC_2023 NC_009698.1 2145779 2146741 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2145779..2146741 Clostridium botulinum A str. Hall 5400833 YP_001387871.1 CDS CLC_2024 NC_009698.1 2147111 2147593 R identified by match to protein family HMM PF00583; acetyltransferase complement(2147111..2147593) Clostridium botulinum A str. Hall 5399112 YP_001387872.1 CDS CLC_2025 NC_009698.1 2148083 2148604 R identified by Glimmer3; hypothetical protein complement(2148083..2148604) Clostridium botulinum A str. Hall 5400762 YP_001387873.1 CDS CLC_2026 NC_009698.1 2148878 2149693 R hypothetical protein complement(2148878..2149693) Clostridium botulinum A str. Hall 5400308 YP_001387874.1 CDS CLC_2027 NC_009698.1 2149875 2150273 D identified by match to protein family HMM PF00293; mutator mutT protein 2149875..2150273 Clostridium botulinum A str. Hall 5400400 YP_001387875.1 CDS CLC_2028 NC_009698.1 2150284 2153190 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; restriction/helicase domain-containing protein complement(2150284..2153190) Clostridium botulinum A str. Hall 5398586 YP_001387876.1 CDS CLC_2029 NC_009698.1 2153248 2153364 R identified by Glimmer3; hypothetical protein complement(2153248..2153364) Clostridium botulinum A str. Hall 5400980 YP_001387877.1 CDS CLC_2030 NC_009698.1 2153763 2153891 R identified by Glimmer3; hypothetical protein complement(2153763..2153891) Clostridium botulinum A str. Hall 5400703 YP_001387878.1 CDS CLC_2031 NC_009698.1 2154186 2155967 R identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD complement(2154186..2155967) Clostridium botulinum A str. Hall 5400978 YP_001387879.1 CDS CLC_2032 NC_009698.1 2155960 2157999 R hypothetical protein complement(2155960..2157999) Clostridium botulinum A str. Hall 5400816 YP_001387880.1 CDS CLC_2033 NC_009698.1 2158405 2158626 R identified by Glimmer3; hypothetical protein complement(2158405..2158626) Clostridium botulinum A str. Hall 5400008 YP_001387881.1 CDS CLC_2034 NC_009698.1 2158690 2158815 R identified by Glimmer3; hypothetical protein complement(2158690..2158815) Clostridium botulinum A str. Hall 5399192 YP_001387882.1 CDS CLC_2035 NC_009698.1 2159071 2159691 R hypothetical protein complement(2159071..2159691) Clostridium botulinum A str. Hall 5398297 YP_001387883.1 CDS CLC_2036 NC_009698.1 2159939 2160337 R identified by Glimmer3; hypothetical protein complement(2159939..2160337) Clostridium botulinum A str. Hall 5398330 YP_001387884.1 CDS CLC_2037 NC_009698.1 2160355 2161209 R identified by Glimmer3; hypothetical protein complement(2160355..2161209) Clostridium botulinum A str. Hall 5398464 YP_001387887.1 CDS CLC_2040 NC_009698.1 2163023 2163907 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator complement(2163023..2163907) Clostridium botulinum A str. Hall 5401362 YP_001387888.1 CDS CLC_2041 NC_009698.1 2163956 2164861 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(2163956..2164861) Clostridium botulinum A str. Hall 5400454 YP_001387889.1 CDS CLC_2042 NC_009698.1 2164982 2165395 R tetracycline resistance domain-containing protein complement(2164982..2165395) Clostridium botulinum A str. Hall 5400659 YP_001387890.1 CDS CLC_2043 NC_009698.1 2165580 2166503 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(2165580..2166503) Clostridium botulinum A str. Hall 5401046 YP_001387891.1 CDS CLC_2044 NC_009698.1 2166798 2168147 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 2166798..2168147 Clostridium botulinum A str. Hall 5398712 YP_001387892.1 CDS CLC_2045 NC_009698.1 2168171 2170795 D identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase family protein 2168171..2170795 Clostridium botulinum A str. Hall 5399603 YP_001387893.1 CDS CLC_2046 NC_009698.1 2171151 2173106 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231; tetracycline resistance protein complement(2171151..2173106) Clostridium botulinum A str. Hall 5400009 YP_001387894.1 CDS CLC_2047 NC_009698.1 2173636 2175306 R identified by Glimmer3; hypothetical protein complement(2173636..2175306) Clostridium botulinum A str. Hall 5401318 YP_001387895.1 CDS CLC_2048 NC_009698.1 2175854 2176144 R identified by match to protein family HMM PF00936; microcompartments family protein complement(2175854..2176144) Clostridium botulinum A str. Hall 5401189 YP_001387896.1 CDS CLC_2049 NC_009698.1 2176218 2176868 R identified by match to protein family HMM PF06130; propanediol utilization protein PduL-like protein complement(2176218..2176868) Clostridium botulinum A str. Hall 5401755 YP_001387897.1 CDS eutE NC_009698.1 2176868 2178466 R identified by match to protein family HMM TIGR02518; acetaldehyde dehydrogenase complement(2176868..2178466) Clostridium botulinum A str. Hall 5400616 YP_001387898.1 CDS CLC_2051 NC_009698.1 2178501 2179298 R identified by match to protein family HMM PF00936; microcompartments family protein complement(2178501..2179298) Clostridium botulinum A str. Hall 5399997 YP_001387899.1 CDS CLC_2052 NC_009698.1 2179319 2179981 R identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ-like protein complement(2179319..2179981) Clostridium botulinum A str. Hall 5400347 YP_001387900.1 CDS CLC_2053 NC_009698.1 2180180 2180443 R identified by match to protein family HMM PF03319; polyhedral organelle formation protein complement(2180180..2180443) Clostridium botulinum A str. Hall 5398858 YP_001387901.1 CDS CLC_2054 NC_009698.1 2180440 2180742 R identified by match to protein family HMM PF00936; hypothetical protein complement(2180440..2180742) Clostridium botulinum A str. Hall 5401834 YP_001387902.1 CDS CLC_2055 NC_009698.1 2180820 2181665 R identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ family protein complement(2180820..2181665) Clostridium botulinum A str. Hall 5401479 YP_001387903.1 CDS CLC_2056 NC_009698.1 2181647 2182375 R hypothetical protein complement(2181647..2182375) Clostridium botulinum A str. Hall 5401639 YP_001387904.1 CDS CLC_2057 NC_009698.1 2182382 2182828 R EutP/PduV family GTP-binding protein complement(2182382..2182828) Clostridium botulinum A str. Hall 5398892 YP_001387905.1 CDS CLC_2058 NC_009698.1 2182825 2183178 R identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS-like protein complement(2182825..2183178) Clostridium botulinum A str. Hall 5400794 YP_001387906.1 CDS CLC_2059 NC_009698.1 2183218 2184171 R identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein complement(2183218..2184171) Clostridium botulinum A str. Hall 5401281 YP_001387907.1 CDS CLC_2060 NC_009698.1 2184335 2186875 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase complement(2184335..2186875) Clostridium botulinum A str. Hall 5400694 YP_001387908.1 CDS CLC_2061 NC_009698.1 2186925 2188418 R aldehyde dehydrogenase complement(2186925..2188418) Clostridium botulinum A str. Hall 5400969 YP_001387909.1 CDS CLC_2062 NC_009698.1 2188456 2188764 R identified by match to protein family HMM PF00936; microcompartments family protein complement(2188456..2188764) Clostridium botulinum A str. Hall 5399772 YP_001387910.1 CDS CLC_2063 NC_009698.1 2188788 2189084 R identified by match to protein family HMM PF00936; microcompartments family protein complement(2188788..2189084) Clostridium botulinum A str. Hall 5401637 YP_001387912.1 CDS CLC_2065 NC_009698.1 2189388 2189654 R identified by Glimmer3; hypothetical protein complement(2189388..2189654) Clostridium botulinum A str. Hall 5399384 YP_001387913.1 CDS CLC_2066 NC_009698.1 2189641 2190753 R hypothetical protein complement(2189641..2190753) Clostridium botulinum A str. Hall 5398797 YP_001387914.1 CDS CLC_2067 NC_009698.1 2191239 2192069 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2191239..2192069) Clostridium botulinum A str. Hall 5400475 YP_001387915.1 CDS CLC_2068 NC_009698.1 2192186 2193328 R identified by match to protein family HMM PF00465; alcohol dehydrogenase complement(2192186..2193328) Clostridium botulinum A str. Hall 5398552 YP_001387916.1 CDS CLC_2069 NC_009698.1 2193841 2195142 D identified by match to protein family HMM PF01554; MATE efflux family protein 2193841..2195142 Clostridium botulinum A str. Hall 5400755 YP_001387917.1 CDS CLC_2070 NC_009698.1 2195288 2196235 D identified by Glimmer3; hypothetical protein 2195288..2196235 Clostridium botulinum A str. Hall 5399512 YP_001387918.1 CDS CLC_2071 NC_009698.1 2196353 2196859 R hypothetical protein complement(2196353..2196859) Clostridium botulinum A str. Hall 5398924 YP_001387919.1 CDS CLC_2072 NC_009698.1 2196887 2197018 R identified by Glimmer3; hypothetical protein complement(2196887..2197018) Clostridium botulinum A str. Hall 5401728 YP_001387920.1 CDS CLC_2073 NC_009698.1 2197003 2197791 R identified by match to protein family HMM PF09234; hypothetical protein complement(2197003..2197791) Clostridium botulinum A str. Hall 5401309 YP_001387921.1 CDS CLC_2074 NC_009698.1 2198596 2198958 R hypothetical protein complement(2198596..2198958) Clostridium botulinum A str. Hall 5398854 YP_001387922.1 CDS CLC_2075 NC_009698.1 2198971 2199459 R identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764; excisionase complement(2198971..2199459) Clostridium botulinum A str. Hall 5400229 YP_001387923.1 CDS CLC_2076 NC_009698.1 2199741 2200379 R identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase complement(2199741..2200379) Clostridium botulinum A str. Hall 5400076 YP_001387924.1 CDS CLC_2077 NC_009698.1 2200348 2203041 R identified by Glimmer3; hypothetical protein complement(2200348..2203041) Clostridium botulinum A str. Hall 5401040 YP_001387925.1 CDS CLC_2078 NC_009698.1 2203358 2204377 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2203358..2204377) Clostridium botulinum A str. Hall 5398780 YP_001387926.1 CDS CLC_2079 NC_009698.1 2204374 2205045 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2204374..2205045) Clostridium botulinum A str. Hall 5401128 YP_001387927.1 CDS CLC_2080 NC_009698.1 2205243 2205953 R hypothetical protein complement(2205243..2205953) Clostridium botulinum A str. Hall 5400800 YP_001387928.2 CDS CLC_2081 NC_009698.1 2205946 2208171 R membrane protein complement(2205946..2208171) Clostridium botulinum A str. Hall 5398231 YP_001387929.1 CDS CLC_2082 NC_009698.1 2208174 2209049 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2208174..2209049) Clostridium botulinum A str. Hall 5401161 YP_001387930.1 CDS CLC_2083 NC_009698.1 2209109 2211103 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2209109..2211103) Clostridium botulinum A str. Hall 5399581 YP_001387931.1 CDS CLC_2084 NC_009698.1 2211411 2212496 R FAD/NAD(P)-binding domain; oxidoreductase complement(2211411..2212496) Clostridium botulinum A str. Hall 5400486 YP_001387932.1 CDS CLC_2085 NC_009698.1 2212489 2212734 R hypothetical protein complement(2212489..2212734) Clostridium botulinum A str. Hall 5399499 YP_001387933.1 CDS CLC_2086 NC_009698.1 2212751 2213242 R hypothetical protein complement(2212751..2213242) Clostridium botulinum A str. Hall 5398618 YP_001387934.1 CDS CLC_2087 NC_009698.1 2213694 2214734 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-binding dehydrogenase oxidoreductase complement(2213694..2214734) Clostridium botulinum A str. Hall 5399953 YP_001387935.1 CDS CLC_2088 NC_009698.1 2214801 2215658 R identified by match to protein family HMM PF01261; AP endonuclease complement(2214801..2215658) Clostridium botulinum A str. Hall 5400683 YP_001387936.1 CDS CLC_2089 NC_009698.1 2215742 2216881 R identified by match to protein family HMM PF01761; 3-dehydroquinate synthase complement(2215742..2216881) Clostridium botulinum A str. Hall 5400829 YP_001387937.1 CDS CLC_2090 NC_009698.1 2217447 2219441 R identified by match to protein family HMM PF02687; ABC transporter permease complement(2217447..2219441) Clostridium botulinum A str. Hall 5398531 YP_001387938.1 CDS CLC_2091 NC_009698.1 2219431 2220198 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2219431..2220198) Clostridium botulinum A str. Hall 5399502 YP_001387939.1 CDS CLC_2092 NC_009698.1 2220984 2221337 R hypothetical protein complement(2220984..2221337) Clostridium botulinum A str. Hall 5399890 YP_001387940.1 CDS CLC_2093 NC_009698.1 2221663 2223756 R identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; PRD domain-containing protein complement(2221663..2223756) Clostridium botulinum A str. Hall 5398952 YP_001387941.1 CDS ulaA NC_009698.1 2223968 2225332 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(2223968..2225332) Clostridium botulinum A str. Hall 5399645 YP_001387942.1 CDS CLC_2095 NC_009698.1 2225345 2225629 R identified by match to protein family HMM PF02302; PTS system L-ascorbate family transporter subunit IIB complement(2225345..2225629) Clostridium botulinum A str. Hall 5400350 YP_001387943.1 CDS CLC_2096 NC_009698.1 2225658 2226095 R identified by match to protein family HMM PF00359; PTS system L-ascorbate family transporter subunit IIA complement(2225658..2226095) Clostridium botulinum A str. Hall 5401562 YP_001387944.1 CDS CLC_2097 NC_009698.1 2226119 2226835 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(2226119..2226835) Clostridium botulinum A str. Hall 5398990 YP_001387945.1 CDS CLC_2098 NC_009698.1 2227070 2227474 R identified by Glimmer3; hypothetical protein complement(2227070..2227474) Clostridium botulinum A str. Hall 5399712 YP_001387946.1 CDS CLC_2099 NC_009698.1 2227812 2228546 R identified by Glimmer3; hypothetical protein complement(2227812..2228546) Clostridium botulinum A str. Hall 5400047 YP_001387947.1 CDS CLC_2100 NC_009698.1 2228886 2229479 R identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein complement(2228886..2229479) Clostridium botulinum A str. Hall 5398756 YP_001387948.1 CDS CLC_2101 NC_009698.1 2230307 2230795 D lipoprotein 2230307..2230795 Clostridium botulinum A str. Hall 5398412 YP_001387949.1 CDS CLC_2102 NC_009698.1 2231578 2231982 R hypothetical protein complement(2231578..2231982) Clostridium botulinum A str. Hall 5399532 YP_001387950.1 CDS CLC_2103 NC_009698.1 2232115 2232729 R identified by match to protein family HMM PF00132; O-acetyltransferase complement(2232115..2232729) Clostridium botulinum A str. Hall 5399479 YP_001387951.1 CDS CLC_2105 NC_009698.1 2233737 2235143 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2233737..2235143 Clostridium botulinum A str. Hall 5398847 YP_001387952.1 CDS CLC_2106 NC_009698.1 2235246 2235986 R identified by match to protein family HMM PF08242; hypothetical protein complement(2235246..2235986) Clostridium botulinum A str. Hall 5401418 YP_001387953.1 CDS CLC_2107 NC_009698.1 2235993 2236883 R identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator complement(2235993..2236883) Clostridium botulinum A str. Hall 5398923 YP_001387954.1 CDS CLC_2108 NC_009698.1 2237184 2237705 D hypothetical protein 2237184..2237705 Clostridium botulinum A str. Hall 5398501 YP_001387955.1 CDS enr NC_009698.1 2239669 2241666 R identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992; 2-enoate reductase complement(2239669..2241666) Clostridium botulinum A str. Hall 5398513 YP_001387956.1 CDS CLC_2110 NC_009698.1 2241763 2242560 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2241763..2242560) Clostridium botulinum A str. Hall 5398256 YP_001387957.1 CDS CLC_2111 NC_009698.1 2242608 2242901 R identified by Glimmer3; hypothetical protein complement(2242608..2242901) Clostridium botulinum A str. Hall 5400920 YP_001387958.1 CDS CLC_2112 NC_009698.1 2243093 2243431 R identified by Glimmer3; hypothetical protein complement(2243093..2243431) Clostridium botulinum A str. Hall 5400784 YP_001387959.1 CDS CLC_2113 NC_009698.1 2243443 2244336 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898; CRISPR-associated Cmr5 family protein complement(2243443..2244336) Clostridium botulinum A str. Hall 5401371 YP_001387960.1 CDS CLC_2114 NC_009698.1 2244348 2244782 R hypothetical protein complement(2244348..2244782) Clostridium botulinum A str. Hall 5399307 YP_001387961.1 CDS cmr4 NC_009698.1 2244810 2245649 R identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580; CRISPR-associated RAMP Cmr4 family protein complement(2244810..2245649) Clostridium botulinum A str. Hall 5398511 YP_001387962.1 CDS cmr3 NC_009698.1 2245661 2246860 R CRISPR-associated Cmr3 family protein complement(2245661..2246860) Clostridium botulinum A str. Hall 5400607 YP_001387963.1 CDS crm2 NC_009698.1 2246877 2248589 R identified by match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein complement(2246877..2248589) Clostridium botulinum A str. Hall 5401292 YP_001387964.1 CDS CLC_2118 NC_009698.1 2248590 2249777 R identified by Glimmer3; hypothetical protein complement(2248590..2249777) Clostridium botulinum A str. Hall 5399175 YP_001387965.1 CDS CLC_2119 NC_009698.1 2249790 2251493 R identified by Glimmer3; hypothetical protein complement(2249790..2251493) Clostridium botulinum A str. Hall 5399215 YP_001387966.1 CDS CLC_2120 NC_009698.1 2251545 2251919 R identified by Glimmer3; hypothetical protein complement(2251545..2251919) Clostridium botulinum A str. Hall 5399059 YP_001387967.1 CDS cas6 NC_009698.1 2251939 2252628 R identified by match to protein family HMM TIGR01877; CRISPR-associated Cas family protein complement(2251939..2252628) Clostridium botulinum A str. Hall 5399295 YP_001387968.1 CDS CLC_2122 NC_009698.1 2254367 2256022 R hypothetical protein complement(2254367..2256022) Clostridium botulinum A str. Hall 5400981 YP_001387971.1 CDS CLC_2125 NC_009698.1 2257785 2258705 R identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein complement(2257785..2258705) Clostridium botulinum A str. Hall 5400842 YP_001387972.1 CDS CLC_2126 NC_009698.1 2259029 2260522 D identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2259029..2260522 Clostridium botulinum A str. Hall 5399687 YP_001387973.1 CDS CLC_2127 NC_009698.1 2261447 2261902 D hypothetical protein 2261447..2261902 Clostridium botulinum A str. Hall 5398589 YP_001387974.1 CDS CLC_2128 NC_009698.1 2261982 2262449 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2261982..2262449) Clostridium botulinum A str. Hall 5398577 YP_001387975.1 CDS CLC_2129 NC_009698.1 2262617 2263663 R identified by match to protein family HMM PF07859; lipase/esterase complement(2262617..2263663) Clostridium botulinum A str. Hall 5398744 YP_001387977.1 CDS CLC_2131 NC_009698.1 2263914 2265266 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase complement(2263914..2265266) Clostridium botulinum A str. Hall 5400552 YP_001387978.1 CDS CLC_2132 NC_009698.1 2265475 2266818 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173; xanthine/uracil permease complement(2265475..2266818) Clostridium botulinum A str. Hall 5401714 YP_001387979.2 CDS CLC_2133 NC_009698.1 2267254 2268153 D identified by Glimmer3; hypothetical protein 2267254..2268153 Clostridium botulinum A str. Hall 5398828 YP_001387980.1 CDS CLC_2134 NC_009698.1 2268494 2269813 D identified by match to protein family HMM PF00324; amino acid permease 2268494..2269813 Clostridium botulinum A str. Hall 5401810 YP_001387981.1 CDS hgdC-2 NC_009698.1 2270092 2270865 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase complement(2270092..2270865) Clostridium botulinum A str. Hall 5399359 YP_001387982.1 CDS CLC_2136 NC_009698.1 2270942 2272573 R hypothetical protein complement(2270942..2272573) Clostridium botulinum A str. Hall 5399960 YP_001387983.1 CDS CLC_2137 NC_009698.1 2272874 2273923 R identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein complement(2272874..2273923) Clostridium botulinum A str. Hall 5400016 YP_001387984.1 CDS CLC_2138 NC_009698.1 2273942 2274727 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein complement(2273942..2274727) Clostridium botulinum A str. Hall 5401624 YP_001387985.1 CDS CLC_2139 NC_009698.1 2274766 2275899 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2274766..2275899) Clostridium botulinum A str. Hall 5398830 YP_001387986.1 CDS CLC_2140 NC_009698.1 2276164 2277291 R identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit beta complement(2276164..2277291) Clostridium botulinum A str. Hall 5398363 YP_001387987.1 CDS CLC_2141 NC_009698.1 2277291 2278523 R identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit alpha complement(2277291..2278523) Clostridium botulinum A str. Hall 5399151 YP_001387988.1 CDS CLC_2142 NC_009698.1 2278586 2279800 R identified by match to protein family HMM PF02515; hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase complement(2278586..2279800) Clostridium botulinum A str. Hall 5401096 YP_001387989.1 CDS CLC_2143 NC_009698.1 2280182 2280502 R identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor biosynthesis complement(2280182..2280502) Clostridium botulinum A str. Hall 5399367 YP_001387990.1 CDS CLC_2144 NC_009698.1 2280598 2281443 R identified by match to protein family HMM PF00037; match to protein family HMM PF01656; iron-sulfur binding protein complement(2280598..2281443) Clostridium botulinum A str. Hall 5400886 YP_001387991.1 CDS CLC_2145 NC_009698.1 2281434 2282264 R identified by match to protein family HMM PF00037; match to protein family HMM PF01656; iron-sulfur binding protein complement(2281434..2282264) Clostridium botulinum A str. Hall 5399732 YP_001387992.1 CDS CLC_2146 NC_009698.1 2282289 2282648 R identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor family protein complement(2282289..2282648) Clostridium botulinum A str. Hall 5400323 YP_001387993.1 CDS CLC_2147 NC_009698.1 2283237 2283614 R identified by Glimmer3; hypothetical protein complement(2283237..2283614) Clostridium botulinum A str. Hall 5401352 YP_001387994.1 CDS motB-1 NC_009698.1 2283910 2284674 R identified by match to protein family HMM PF00691; chemotaxis protein MotB complement(2283910..2284674) Clostridium botulinum A str. Hall 5398310 YP_001387995.1 CDS motA-1 NC_009698.1 2284692 2285477 R With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein MotA complement(2284692..2285477) Clostridium botulinum A str. Hall 5398777 YP_001387997.1 CDS CLC_2151 NC_009698.1 2286166 2287782 R identified by match to protein family HMM PF04122; amidase complement(2286166..2287782) Clostridium botulinum A str. Hall 5401402 YP_001387998.1 CDS CLC_2152 NC_009698.1 2288093 2288716 R hypothetical protein complement(2288093..2288716) Clostridium botulinum A str. Hall 5399925 YP_001387999.1 CDS CLC_2153 NC_009698.1 2288996 2289337 R hypothetical protein complement(2288996..2289337) Clostridium botulinum A str. Hall 5398644 YP_001388000.1 CDS CLC_2154 NC_009698.1 2289343 2291298 R identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter complement(2289343..2291298) Clostridium botulinum A str. Hall 5399351 YP_001388001.1 CDS pepD-2 NC_009698.1 2291416 2292864 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(2291416..2292864) Clostridium botulinum A str. Hall 5398503 YP_001388002.1 CDS CLC_2156 NC_009698.1 2293422 2294450 R identified by match to protein family HMM PF01212; low specificity L-threonine aldolase complement(2293422..2294450) Clostridium botulinum A str. Hall 5400873 YP_001388003.1 CDS CLC_2158 NC_009698.1 2295157 2295291 D identified by Glimmer3; hypothetical protein 2295157..2295291 Clostridium botulinum A str. Hall 5401628 YP_001388004.1 CDS glxK NC_009698.1 2295288 2296430 R identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase complement(2295288..2296430) Clostridium botulinum A str. Hall 5398430 YP_001388005.1 CDS CLC_2159 NC_009698.1 2297069 2297866 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2297069..2297866 Clostridium botulinum A str. Hall 5399767 YP_001388006.1 CDS CLC_2160 NC_009698.1 2298388 2299566 R sodium extrusion protein NatB complement(2298388..2299566) Clostridium botulinum A str. Hall 5399740 YP_001388007.1 CDS CLC_2161 NC_009698.1 2299580 2300299 R identified by match to protein family HMM PF00005; sodium extrusion ATP-binding protein NatA complement(2299580..2300299) Clostridium botulinum A str. Hall 5401409 YP_001388008.1 CDS CLC_2162 NC_009698.1 2300755 2301204 R identified by match to protein family HMM PF00583; acetyltransferase complement(2300755..2301204) Clostridium botulinum A str. Hall 5399539 YP_001388009.1 CDS CLC_2163 NC_009698.1 2301218 2301682 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2301218..2301682) Clostridium botulinum A str. Hall 5400437 YP_001388010.1 CDS CLC_2164 NC_009698.1 2302033 2302167 D identified by Glimmer3; hypothetical protein 2302033..2302167 Clostridium botulinum A str. Hall 5401226 YP_001388011.1 CDS CLC_2165 NC_009698.1 2302375 2302779 R hypothetical protein complement(2302375..2302779) Clostridium botulinum A str. Hall 5398366 YP_001388012.1 CDS CLC_2166 NC_009698.1 2302875 2303945 R identified by match to protein family HMM PF01208; uroporphyrinogen decarboxylase complement(2302875..2303945) Clostridium botulinum A str. Hall 5401519 YP_001388013.1 CDS CLC_2167 NC_009698.1 2304293 2305741 R identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD/[2Fe-2S]-binding complement(2304293..2305741) Clostridium botulinum A str. Hall 5401162 YP_001388014.1 CDS CLC_2168 NC_009698.1 2306089 2306907 D identified by match to protein family HMM PF00376; match to protein family HMM PF06445; MerR family transcriptional regulator 2306089..2306907 Clostridium botulinum A str. Hall 5399785 YP_001388015.1 CDS CLC_2169 NC_009698.1 2307116 2308519 R identified by match to protein family HMM PF00324; amino acid permease complement(2307116..2308519) Clostridium botulinum A str. Hall 5399909 YP_001388016.1 CDS CLC_2170 NC_009698.1 2308957 2309499 R identified by match to protein family HMM PF01661; hypothetical protein complement(2308957..2309499) Clostridium botulinum A str. Hall 5400488 YP_001388017.1 CDS CLC_2171 NC_009698.1 2309881 2310138 R identified by match to protein family HMM PF06961; hypothetical protein complement(2309881..2310138) Clostridium botulinum A str. Hall 5399597 YP_001388018.1 CDS CLC_2172 NC_009698.1 2310498 2310623 D identified by Glimmer3; hypothetical protein 2310498..2310623 Clostridium botulinum A str. Hall 5400790 YP_001388019.1 CDS CLC_2173 NC_009698.1 2310642 2311073 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2310642..2311073 Clostridium botulinum A str. Hall 5398293 YP_001388020.1 CDS CLC_2174 NC_009698.1 2311076 2311468 D hypothetical protein 2311076..2311468 Clostridium botulinum A str. Hall 5399934 YP_001388021.1 CDS CLC_2175 NC_009698.1 2311726 2311914 R ATP-binding protein complement(2311726..2311914) Clostridium botulinum A str. Hall 5399558 YP_001388022.1 CDS thiM-2 NC_009698.1 2312134 2312931 R identified by match to protein family HMM PF02110; hydroxyethylthiazole kinase complement(2312134..2312931) Clostridium botulinum A str. Hall 5400907 YP_001388023.2 CDS thiW NC_009698.1 2312909 2313478 R thiW protein complement(2312909..2313478) Clostridium botulinum A str. Hall 5398470 YP_001388025.1 CDS CLC_2179 NC_009698.1 2313921 2314358 R identified by match to protein family HMM PF00583; acetyltransferase complement(2313921..2314358) Clostridium botulinum A str. Hall 5400452 YP_001388026.1 CDS CLC_2180 NC_009698.1 2314486 2315214 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(2314486..2315214) Clostridium botulinum A str. Hall 5400875 YP_001388027.1 CDS CLC_2181 NC_009698.1 2315399 2315671 R hypothetical protein complement(2315399..2315671) Clostridium botulinum A str. Hall 5399523 YP_001388028.1 CDS bioD NC_009698.1 2315956 2316639 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2315956..2316639) Clostridium botulinum A str. Hall 5401450 YP_001388029.1 CDS bioB NC_009698.1 2316642 2317598 R identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase complement(2316642..2317598) Clostridium botulinum A str. Hall 5401796 YP_001388030.1 CDS CLC_2184 NC_009698.1 2317591 2318151 R identified by match to protein family HMM PF02632; BioY family protein complement(2317591..2318151) Clostridium botulinum A str. Hall 5399643 YP_001388031.1 CDS CLC_2185 NC_009698.1 2318290 2318619 R hypothetical protein complement(2318290..2318619) Clostridium botulinum A str. Hall 5398606 YP_001388032.1 CDS CLC_2186 NC_009698.1 2318607 2319035 R identified by match to protein family HMM PF01022; match to protein family HMM PF01047; MarR family transcriptional regulator complement(2318607..2319035) Clostridium botulinum A str. Hall 5399733 YP_001388033.1 CDS CLC_2187 NC_009698.1 2319177 2319773 R hypothetical protein complement(2319177..2319773) Clostridium botulinum A str. Hall 5398977 YP_001388034.1 CDS CLC_2188 NC_009698.1 2319951 2321744 D identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family metallopeptidase 2319951..2321744 Clostridium botulinum A str. Hall 5401790 YP_001388035.1 CDS CLC_2189 NC_009698.1 2321775 2323172 D identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2321775..2323172 Clostridium botulinum A str. Hall 5400540 YP_001388036.1 CDS CLC_2190 NC_009698.1 2323712 2323960 R identified by Glimmer3; hypothetical protein complement(2323712..2323960) Clostridium botulinum A str. Hall 5398741 YP_001388037.1 CDS CLC_2191 NC_009698.1 2324224 2324493 R hypothetical protein complement(2324224..2324493) Clostridium botulinum A str. Hall 5401367 YP_001388038.1 CDS CLC_2192 NC_009698.1 2324761 2325093 D identified by Glimmer3; hypothetical protein 2324761..2325093 Clostridium botulinum A str. Hall 5398668 YP_001388039.1 CDS CLC_2193 NC_009698.1 2325258 2326259 R identified by match to protein family HMM PF02275; match to protein family HMM PF03417; choloylglycine hydrolase complement(2325258..2326259) Clostridium botulinum A str. Hall 5400757 YP_001388040.1 CDS CLC_2194 NC_009698.1 2326457 2327038 R identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein complement(2326457..2327038) Clostridium botulinum A str. Hall 5401287 YP_001388041.1 CDS CLC_2195 NC_009698.1 2327493 2327834 R identified by Glimmer3; hypothetical protein complement(2327493..2327834) Clostridium botulinum A str. Hall 5398981 YP_008472695.1 CDS CLC_2197 NC_009698.1 2327967 2328095 R hypothetical protein complement(2327967..2328095) Clostridium botulinum A str. Hall 5398904 YP_001388042.1 CDS CLC_2198 NC_009698.1 2328153 2328356 R identified by Glimmer3; hypothetical protein complement(2328153..2328356) Clostridium botulinum A str. Hall 5400070 YP_001388043.1 CDS CLC_2199 NC_009698.1 2329170 2329502 D identified by Glimmer3; hypothetical protein 2329170..2329502 Clostridium botulinum A str. Hall 5399071 YP_001388044.1 CDS CLC_2200 NC_009698.1 2329944 2330927 D hypothetical protein 2329944..2330927 Clostridium botulinum A str. Hall 5399828 YP_001388045.1 CDS CLC_2201 NC_009698.1 2331022 2331189 R hypothetical protein complement(2331022..2331189) Clostridium botulinum A str. Hall 5401002 YP_001388046.1 CDS CLC_2202 NC_009698.1 2332041 2332634 R lipoprotein complement(2332041..2332634) Clostridium botulinum A str. Hall 5398833 YP_001388047.1 CDS msrB NC_009698.1 2332808 2333257 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(2332808..2333257) Clostridium botulinum A str. Hall 5400946 YP_001388048.1 CDS sodF NC_009698.1 2333489 2334085 R identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Mn/Fe superoxide dismutase complement(2333489..2334085) Clostridium botulinum A str. Hall 5400103 YP_001388049.1 CDS CLC_2205 NC_009698.1 2334198 2335943 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein/permease complement(2334198..2335943) Clostridium botulinum A str. Hall 5399884 YP_001388050.1 CDS CLC_2206 NC_009698.1 2335936 2337735 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease complement(2335936..2337735) Clostridium botulinum A str. Hall 5401665 YP_001388051.1 CDS CLC_2207 NC_009698.1 2338015 2338974 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(2338015..2338974) Clostridium botulinum A str. Hall 5399880 YP_001388052.1 CDS CLC_2208 NC_009698.1 2339481 2340215 R hypothetical protein complement(2339481..2340215) Clostridium botulinum A str. Hall 5399742 YP_001388053.1 CDS CLC_2209 NC_009698.1 2340251 2340997 R hypothetical protein complement(2340251..2340997) Clostridium botulinum A str. Hall 5400213 YP_001388054.1 CDS CLC_2210 NC_009698.1 2340990 2341910 R identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein complement(2340990..2341910) Clostridium botulinum A str. Hall 5400266 YP_001388055.1 CDS CLC_2211 NC_009698.1 2342112 2343023 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2342112..2343023) Clostridium botulinum A str. Hall 5399481 YP_001388056.1 CDS CLC_2212 NC_009698.1 2343020 2343727 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2343020..2343727) Clostridium botulinum A str. Hall 5398473 YP_001388058.1 CDS CLC_2214 NC_009698.1 2344354 2345115 D identified by match to protein family HMM PF00929; exonuclease 2344354..2345115 Clostridium botulinum A str. Hall 5398491 YP_001388059.1 CDS CLC_2215 NC_009698.1 2345149 2345451 R identified by match to protein family HMM PF07876; stress responsive alpha-beta barrel domain-containing protein complement(2345149..2345451) Clostridium botulinum A str. Hall 5400511 YP_001388060.1 CDS CLC_2216 NC_009698.1 2345534 2346370 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(2345534..2346370) Clostridium botulinum A str. Hall 5399836 YP_001388061.1 CDS def-1 NC_009698.1 2346673 2347125 R identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase complement(2346673..2347125) Clostridium botulinum A str. Hall 5400178 YP_001388062.1 CDS CLC_2218 NC_009698.1 2347126 2347362 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2347126..2347362) Clostridium botulinum A str. Hall 5399143 YP_001388063.1 CDS tgl NC_009698.1 2347604 2348425 R involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links; transglutaminase complement(2347604..2348425) Clostridium botulinum A str. Hall 5398397 YP_001388064.1 CDS CLC_2220 NC_009698.1 2348422 2349417 R identified by Glimmer3; hypothetical protein complement(2348422..2349417) Clostridium botulinum A str. Hall 5401472 YP_001388065.1 CDS CLC_2221 NC_009698.1 2350157 2351056 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2350157..2351056 Clostridium botulinum A str. Hall 5400378 YP_001388066.1 CDS CLC_2222 NC_009698.1 2351246 2351842 R hypothetical protein complement(2351246..2351842) Clostridium botulinum A str. Hall 5400467 YP_001388067.1 CDS CLC_2223 NC_009698.1 2352518 2353891 D identified by match to protein family HMM PF02366; hypothetical protein 2352518..2353891 Clostridium botulinum A str. Hall 5398315 YP_001388068.1 CDS CLC_2224 NC_009698.1 2354093 2354398 R hypothetical protein complement(2354093..2354398) Clostridium botulinum A str. Hall 5401773 YP_001388069.1 CDS CLC_2225 NC_009698.1 2354391 2354915 R hypothetical protein complement(2354391..2354915) Clostridium botulinum A str. Hall 5399569 YP_001388070.1 CDS CLC_2226 NC_009698.1 2354896 2355348 R identified by Glimmer3; hypothetical protein complement(2354896..2355348) Clostridium botulinum A str. Hall 5400959 YP_001388071.1 CDS CLC_2227 NC_009698.1 2355345 2355857 R identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor complement(2355345..2355857) Clostridium botulinum A str. Hall 5398288 YP_001388072.1 CDS CLC_2228 NC_009698.1 2356311 2357417 R identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein complement(2356311..2357417) Clostridium botulinum A str. Hall 5400657 YP_001388073.1 CDS CLC_2229 NC_009698.1 2357822 2358769 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase complement(2357822..2358769) Clostridium botulinum A str. Hall 5399469 YP_001388074.1 CDS CLC_2230 NC_009698.1 2358839 2360191 R identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; poly(A) polymerase complement(2358839..2360191) Clostridium botulinum A str. Hall 5399587 YP_001388075.1 CDS CLC_2231 NC_009698.1 2360181 2360429 R identified by Glimmer3; hypothetical protein complement(2360181..2360429) Clostridium botulinum A str. Hall 5399398 YP_001388076.1 CDS CLC_2232 NC_009698.1 2360606 2360770 R identified by Glimmer3; hypothetical protein complement(2360606..2360770) Clostridium botulinum A str. Hall 5398254 YP_001388077.1 CDS CLC_2233 NC_009698.1 2361373 2361705 D identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2361373..2361705 Clostridium botulinum A str. Hall 5401762 YP_001388078.2 CDS CLC_2234 NC_009698.1 2361707 2362483 D membrane protein 2361707..2362483 Clostridium botulinum A str. Hall 5398958 YP_001388079.1 CDS CLC_2235 NC_009698.1 2362557 2363807 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(2362557..2363807) Clostridium botulinum A str. Hall 5401787 YP_001388080.1 CDS CLC_2236 NC_009698.1 2363800 2364480 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2363800..2364480) Clostridium botulinum A str. Hall 5400926 YP_001388081.1 CDS CLC_2237 NC_009698.1 2364473 2365012 R identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein complement(2364473..2365012) Clostridium botulinum A str. Hall 5398885 YP_001388082.1 CDS CLC_2238 NC_009698.1 2365162 2365704 R identified by Glimmer3; hypothetical protein complement(2365162..2365704) Clostridium botulinum A str. Hall 5401740 YP_001388083.1 CDS CLC_2239 NC_009698.1 2366062 2366871 R hypothetical protein complement(2366062..2366871) Clostridium botulinum A str. Hall 5398378 YP_001388084.1 CDS CLC_2240 NC_009698.1 2366747 2366905 R identified by Glimmer3; hypothetical protein complement(2366747..2366905) Clostridium botulinum A str. Hall 5400951 YP_001388085.1 CDS gidA-1 NC_009698.1 2367171 2368448 D identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2367171..2368448 Clostridium botulinum A str. Hall 5401581 YP_001388086.1 CDS purB NC_009698.1 2368499 2369929 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2368499..2369929) Clostridium botulinum A str. Hall 5399176 YP_001388087.1 CDS CLC_2243 NC_009698.1 2370181 2370402 D identified by match to protein family HMM PF04070; hypothetical protein 2370181..2370402 Clostridium botulinum A str. Hall 5400351 YP_001388088.1 CDS ptsH NC_009698.1 2370430 2370687 R identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(2370430..2370687) Clostridium botulinum A str. Hall 5401457 YP_001388089.1 CDS aspB-3 NC_009698.1 2370798 2371991 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2370798..2371991) Clostridium botulinum A str. Hall 5400641 YP_001388090.1 CDS CLC_2246 NC_009698.1 2372136 2372492 R identified by match to protein family HMM PF00892; match to protein family HMM PF00893; hypothetical protein complement(2372136..2372492) Clostridium botulinum A str. Hall 5399357 YP_001388091.1 CDS CLC_2247 NC_009698.1 2372489 2373772 R hypothetical protein complement(2372489..2373772) Clostridium botulinum A str. Hall 5400098 YP_001388092.1 CDS CLC_2248 NC_009698.1 2373791 2374657 R catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase complement(2373791..2374657) Clostridium botulinum A str. Hall 5400306 YP_001388093.1 CDS spoVS NC_009698.1 2374820 2375080 R identified by match to protein family HMM PF04232; stage V sporulation protein S complement(2374820..2375080) Clostridium botulinum A str. Hall 5398696 YP_001388094.1 CDS CLC_2250 NC_009698.1 2375219 2376760 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(2375219..2376760) Clostridium botulinum A str. Hall 5399561 YP_001388095.1 CDS recA NC_009698.1 2376995 2378053 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2376995..2378053) Clostridium botulinum A str. Hall 5400808 YP_001388096.1 CDS pgsA NC_009698.1 2378201 2378785 R identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2378201..2378785) Clostridium botulinum A str. Hall 5400413 YP_001388097.1 CDS CLC_2253 NC_009698.1 2378769 2380106 R identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; RNA modification protein complement(2378769..2380106) Clostridium botulinum A str. Hall 5398864 YP_001388098.1 CDS ftsK NC_009698.1 2380201 2382477 R identified by match to protein family HMM PF01580; DNA translocase FtsK complement(2380201..2382477) Clostridium botulinum A str. Hall 5398818 YP_001388099.1 CDS clpP-1 NC_009698.1 2382958 2383650 R identified by match to protein family HMM PF00574; Clp protease complement(2382958..2383650) Clostridium botulinum A str. Hall 5401121 YP_001388100.1 CDS dapG NC_009698.1 2383898 2385103 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase complement(2383898..2385103) Clostridium botulinum A str. Hall 5399262 YP_001388101.1 CDS CLC_2257 NC_009698.1 2385119 2385391 R identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein complement(2385119..2385391) Clostridium botulinum A str. Hall 5398247 YP_001388102.1 CDS CLC_2258 NC_009698.1 2385468 2386769 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(2385468..2386769) Clostridium botulinum A str. Hall 5400366 YP_001388103.1 CDS pnpA NC_009698.1 2386944 2389052 R identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase complement(2386944..2389052) Clostridium botulinum A str. Hall 5400150 YP_001388104.1 CDS rpsO NC_009698.1 2389316 2389630 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2389316..2389630) Clostridium botulinum A str. Hall 5400628 YP_001388105.1 CDS ribF NC_009698.1 2389712 2390632 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(2389712..2390632) Clostridium botulinum A str. Hall 5400401 YP_001388106.1 CDS truB NC_009698.1 2390645 2391514 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2390645..2391514) Clostridium botulinum A str. Hall 5400940 YP_001388107.1 CDS CLC_2263 NC_009698.1 2391515 2392477 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(2391515..2392477) Clostridium botulinum A str. Hall 5401353 YP_001388108.1 CDS rbfA NC_009698.1 2392467 2392829 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2392467..2392829) Clostridium botulinum A str. Hall 5401265 YP_001388109.1 CDS infB NC_009698.1 2392860 2394926 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2392860..2394926) Clostridium botulinum A str. Hall 5398735 YP_001388110.1 CDS CLC_2266 NC_009698.1 2394944 2395261 R identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein complement(2394944..2395261) Clostridium botulinum A str. Hall 5399327 YP_001388111.1 CDS CLC_2267 NC_009698.1 2395248 2395520 R identified by match to protein family HMM PF04296; hypothetical protein complement(2395248..2395520) Clostridium botulinum A str. Hall 5400422 YP_001388112.1 CDS nusA NC_009698.1 2395580 2396953 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(2395580..2396953) Clostridium botulinum A str. Hall 5401549 YP_001388113.1 CDS CLC_2269 NC_009698.1 2396970 2397431 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(2396970..2397431) Clostridium botulinum A str. Hall 5398878 YP_001388114.1 CDS polC NC_009698.1 2397736 2402034 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC complement(2397736..2402034) Clostridium botulinum A str. Hall 5398593 YP_001388115.1 CDS ispG NC_009698.1 2402313 2403362 R catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(2402313..2403362) Clostridium botulinum A str. Hall 5398917 YP_001388116.1 CDS CLC_2272 NC_009698.1 2403503 2404513 R identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease complement(2403503..2404513) Clostridium botulinum A str. Hall 5398259 YP_001388117.1 CDS dxr NC_009698.1 2404558 2405715 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2404558..2405715) Clostridium botulinum A str. Hall 5399283 YP_001388118.1 CDS CLC_2274 NC_009698.1 2405752 2406732 R identified by match to protein family HMM PF01594; hypothetical protein complement(2405752..2406732) Clostridium botulinum A str. Hall 5398235 YP_001388119.1 CDS CLC_2275 NC_009698.1 2406832 2406954 R identified by Glimmer3; hypothetical protein complement(2406832..2406954) Clostridium botulinum A str. Hall 5399178 YP_001388120.1 CDS CLC_2276 NC_009698.1 2407013 2407201 R identified by Glimmer3; hypothetical protein complement(2407013..2407201) Clostridium botulinum A str. Hall 5399128 YP_001388121.1 CDS cdsA NC_009698.1 2407387 2408184 R identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase complement(2407387..2408184) Clostridium botulinum A str. Hall 5399358 YP_001388122.1 CDS uppS NC_009698.1 2408209 2408967 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(2408209..2408967) Clostridium botulinum A str. Hall 5399256 YP_001388123.1 CDS frr NC_009698.1 2409033 2409587 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2409033..2409587) Clostridium botulinum A str. Hall 5400656 YP_001388124.1 CDS pyrH NC_009698.1 2409603 2410319 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2409603..2410319) Clostridium botulinum A str. Hall 5401622 YP_001388126.1 CDS tsf NC_009698.1 2410694 2411617 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2410694..2411617) Clostridium botulinum A str. Hall 5399341 YP_001388127.1 CDS rpsB NC_009698.1 2411705 2412406 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2411705..2412406) Clostridium botulinum A str. Hall 5401075 YP_001388128.1 CDS codY NC_009698.1 2412643 2413419 R CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY complement(2412643..2413419) Clostridium botulinum A str. Hall 5399530 YP_001388129.1 CDS topA NC_009698.1 2413626 2415728 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(2413626..2415728) Clostridium botulinum A str. Hall 5401662 YP_001388130.1 CDS dprA NC_009698.1 2416100 2417185 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA complement(2416100..2417185) Clostridium botulinum A str. Hall 5398687 YP_001388131.1 CDS CLC_2287 NC_009698.1 2417385 2418908 D identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2417385..2418908 Clostridium botulinum A str. Hall 5401805 YP_001388132.1 CDS CLC_2288 NC_009698.1 2418924 2419295 D identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 2418924..2419295 Clostridium botulinum A str. Hall 5400050 YP_001388133.1 CDS rnhB NC_009698.1 2419378 2420187 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2419378..2420187) Clostridium botulinum A str. Hall 5401760 YP_001388134.1 CDS rbgA NC_009698.1 2420484 2421362 R essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase complement(2420484..2421362) Clostridium botulinum A str. Hall 5401465 YP_001388135.1 CDS lepB-2 NC_009698.1 2421666 2422190 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(2421666..2422190) Clostridium botulinum A str. Hall 5399121 YP_001388136.1 CDS rplS NC_009698.1 2422249 2422593 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2422249..2422593) Clostridium botulinum A str. Hall 5400441 YP_001388137.1 CDS trmD NC_009698.1 2422744 2423466 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2422744..2423466) Clostridium botulinum A str. Hall 5398863 YP_001388138.1 CDS rimM NC_009698.1 2423457 2423951 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(2423457..2423951) Clostridium botulinum A str. Hall 5398788 YP_001388139.1 CDS CLC_2295 NC_009698.1 2424064 2424291 R hypothetical protein complement(2424064..2424291) Clostridium botulinum A str. Hall 5401038 YP_001388140.1 CDS rpsP NC_009698.1 2424312 2424560 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2424312..2424560) Clostridium botulinum A str. Hall 5398351 YP_001388141.1 CDS ffh NC_009698.1 2424591 2425940 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(2424591..2425940) Clostridium botulinum A str. Hall 5399910 YP_001388142.1 CDS CLC_2298 NC_009698.1 2425953 2426285 R identified by match to protein family HMM PF04297; DNA-binding protein complement(2425953..2426285) Clostridium botulinum A str. Hall 5399323 YP_001388143.1 CDS ftsY NC_009698.1 2426509 2427420 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(2426509..2427420) Clostridium botulinum A str. Hall 5399623 YP_001388144.1 CDS smc NC_009698.1 2427583 2431164 R identified by match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC complement(2427583..2431164) Clostridium botulinum A str. Hall 5401296 YP_001388145.1 CDS CLC_2301 NC_009698.1 2431177 2431305 R identified by Glimmer3; hypothetical protein complement(2431177..2431305) Clostridium botulinum A str. Hall 5399372 YP_001388146.1 CDS CLC_2302 NC_009698.1 2431428 2432519 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2431428..2432519) Clostridium botulinum A str. Hall 5401473 YP_001388147.1 CDS rnc NC_009698.1 2432512 2433216 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(2432512..2433216) Clostridium botulinum A str. Hall 5398812 YP_001388148.1 CDS acpP NC_009698.1 2433328 2433561 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2433328..2433561) Clostridium botulinum A str. Hall 5401439 YP_001388149.1 CDS plsX NC_009698.1 2433639 2434646 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(2433639..2434646) Clostridium botulinum A str. Hall 5398731 YP_001388150.1 CDS rpmF NC_009698.1 2434736 2434918 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2434736..2434918) Clostridium botulinum A str. Hall 5399722 YP_001388151.1 CDS CLC_2307 NC_009698.1 2434932 2435432 R identified by match to protein family HMM PF02620; ribosomal protein L32 family protein complement(2434932..2435432) Clostridium botulinum A str. Hall 5399919 YP_001388152.1 CDS ackA NC_009698.1 2435550 2436743 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2435550..2436743) Clostridium botulinum A str. Hall 5400371 YP_001388153.1 CDS eutD NC_009698.1 2436883 2437881 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(2436883..2437881) Clostridium botulinum A str. Hall 5401266 YP_001388154.1 CDS CLC_2310 NC_009698.1 2438215 2439093 R hypothetical protein complement(2438215..2439093) Clostridium botulinum A str. Hall 5400143 YP_001388156.1 CDS CLC_2312 NC_009698.1 2440209 2440484 R identified by Glimmer3; hypothetical protein complement(2440209..2440484) Clostridium botulinum A str. Hall 5400302 YP_001388157.1 CDS CLC_2313 NC_009698.1 2440493 2442607 R identified by match to protein family HMM PF09338; D-proline reductase subunit PrdA complement(2440493..2442607) Clostridium botulinum A str. Hall 5398808 YP_001388158.1 CDS CLC_2314 NC_009698.1 2442640 2442810 R identified by Glimmer3; hypothetical protein complement(2442640..2442810) Clostridium botulinum A str. Hall 5398490 YP_001388159.1 CDS CLC_2315 NC_009698.1 2442832 2443950 R identified by match to protein family HMM PF01512; electron transport protein complement(2442832..2443950) Clostridium botulinum A str. Hall 5398840 YP_001388160.1 CDS CLC_2316 NC_009698.1 2444946 2445842 R hypothetical protein complement(2444946..2445842) Clostridium botulinum A str. Hall 5400687 YP_001388161.1 CDS CLC_2317 NC_009698.1 2446154 2448172 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(2446154..2448172) Clostridium botulinum A str. Hall 5399010 YP_001388162.1 CDS CLC_2319 NC_009698.1 2449452 2450537 R hypothetical protein complement(2449452..2450537) Clostridium botulinum A str. Hall 5400880 YP_001388163.1 CDS CLC_2320 NC_009698.1 2450606 2451682 R hypothetical protein complement(2450606..2451682) Clostridium botulinum A str. Hall 5401332 YP_001388164.1 CDS CLC_2321 NC_009698.1 2451899 2452096 R identified by Glimmer3; hypothetical protein complement(2451899..2452096) Clostridium botulinum A str. Hall 5399839 YP_001388165.1 CDS CLC_2322 NC_009698.1 2452237 2453682 D identified by match to protein family HMM PF00324; amino acid permease 2452237..2453682 Clostridium botulinum A str. Hall 5401732 YP_001388166.1 CDS CLC_2323 NC_009698.1 2453835 2454704 R hypothetical protein complement(2453835..2454704) Clostridium botulinum A str. Hall 5401186 YP_001388169.1 CDS CLC_2326 NC_009698.1 2455229 2456236 R identified by match to protein family HMM PF05544; proline racemase complement(2455229..2456236) Clostridium botulinum A str. Hall 5399509 YP_008472696.1 CDS CLC_2327 NC_009698.1 2456250 2456720 R PrdE protein complement(2456250..2456720) Clostridium botulinum A str. Hall 5400407 YP_001388171.1 CDS prdD NC_009698.1 2456734 2457510 R PrdD protein complement(2456734..2457510) Clostridium botulinum A str. Hall 5398341 YP_001388173.1 CDS CLC_2330 NC_009698.1 2458652 2458927 R identified by Glimmer3; hypothetical protein complement(2458652..2458927) Clostridium botulinum A str. Hall 5398248 YP_001388174.1 CDS prdA NC_009698.1 2458936 2461047 R identified by match to protein family HMM PF09338; D-proline reductase subunit PrdA complement(2458936..2461047) Clostridium botulinum A str. Hall 5400848 YP_001388175.1 CDS CLC_2332 NC_009698.1 2461072 2461248 R identified by Glimmer3; hypothetical protein complement(2461072..2461248) Clostridium botulinum A str. Hall 5399284 YP_001388176.1 CDS CLC_2333 NC_009698.1 2461270 2462388 R identified by match to protein family HMM PF01512; NADH dehydrogenase complement(2461270..2462388) Clostridium botulinum A str. Hall 5399490 YP_001388177.1 CDS CLC_2334 NC_009698.1 2463029 2463691 R identified by Glimmer3; hypothetical protein complement(2463029..2463691) Clostridium botulinum A str. Hall 5401290 YP_001388178.1 CDS CLC_2335 NC_009698.1 2463731 2465035 R identified by match to protein family HMM PF01512; electron transport protein complement(2463731..2465035) Clostridium botulinum A str. Hall 5399932 YP_008472697.1 CDS CLC_2338 NC_009698.1 2465628 2466155 R permease complement(2465628..2466155) Clostridium botulinum A str. Hall 5401826 YP_001388183.1 CDS CLC_2339 NC_009698.1 2466160 2466639 R hypothetical protein complement(2466160..2466639) Clostridium botulinum A str. Hall 5399653 YP_001388184.1 CDS CLC_2341 NC_009698.1 2466743 2467042 R identified by Glimmer3; hypothetical protein complement(2466743..2467042) Clostridium botulinum A str. Hall 5398918 YP_001388185.1 CDS CLC_2342 NC_009698.1 2467115 2467543 R PrdA domain-containing protein complement(2467115..2467543) Clostridium botulinum A str. Hall 5398466 YP_001388186.1 CDS CLC_2343 NC_009698.1 2467574 2468884 R identified by match to protein family HMM PF01512; electron transport protein complement(2467574..2468884) Clostridium botulinum A str. Hall 5398829 YP_001388187.1 CDS CLC_2344 NC_009698.1 2469060 2470814 R identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator complement(2469060..2470814) Clostridium botulinum A str. Hall 5398719 YP_001388188.1 CDS CLC_2345 NC_009698.1 2471150 2472379 D identified by match to protein family HMM PF05636; hypothetical protein 2471150..2472379 Clostridium botulinum A str. Hall 5401580 YP_001388189.1 CDS CLC_2346 NC_009698.1 2472439 2473605 D identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871; nucleoside recognition domain-containing protein 2472439..2473605 Clostridium botulinum A str. Hall 5399290 YP_001388190.1 CDS CLC_2347 NC_009698.1 2473606 2474130 R hypothetical protein complement(2473606..2474130) Clostridium botulinum A str. Hall 5399962 YP_001388191.1 CDS coaD NC_009698.1 2474143 2474637 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(2474143..2474637) Clostridium botulinum A str. Hall 5399966 YP_001388192.1 CDS CLC_2349 NC_009698.1 2474639 2475196 R identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase complement(2474639..2475196) Clostridium botulinum A str. Hall 5400424 YP_001388193.1 CDS recG NC_009698.1 2475458 2477497 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2475458..2477497) Clostridium botulinum A str. Hall 5398779 YP_001388194.1 CDS CLC_2351 NC_009698.1 2477847 2479472 R identified by match to protein family HMM PF02734; DAK2 domain-containing protein complement(2477847..2479472) Clostridium botulinum A str. Hall 5401054 YP_001388195.1 CDS CLC_2352 NC_009698.1 2479487 2479837 R identified by match to protein family HMM PF03780; hypothetical protein complement(2479487..2479837) Clostridium botulinum A str. Hall 5399611 YP_001388196.1 CDS rpmB NC_009698.1 2480037 2480228 D required for 70S ribosome assembly; 50S ribosomal protein L28 2480037..2480228 Clostridium botulinum A str. Hall 5399738 YP_001388197.1 CDS CLC_2354 NC_009698.1 2480277 2480396 R identified by Glimmer3; hypothetical protein complement(2480277..2480396) Clostridium botulinum A str. Hall 5399780 YP_001388198.1 CDS CLC_2355 NC_009698.1 2480474 2480629 R hypothetical protein complement(2480474..2480629) Clostridium botulinum A str. Hall 5399493 YP_001388199.1 CDS CLC_2356 NC_009698.1 2481007 2481651 R identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase complement(2481007..2481651) Clostridium botulinum A str. Hall 5401370 YP_001388200.1 CDS rpe NC_009698.1 2481653 2482303 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(2481653..2482303) Clostridium botulinum A str. Hall 5398324 YP_001388201.1 CDS rsgA NC_009698.1 2482297 2483175 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(2482297..2483175) Clostridium botulinum A str. Hall 5400963 YP_001388202.1 CDS CLC_2359 NC_009698.1 2483382 2485325 R identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714; protein kinase complement(2483382..2485325) Clostridium botulinum A str. Hall 5399113 YP_001388203.1 CDS CLC_2360 NC_009698.1 2485303 2486052 R identified by match to protein family HMM PF00481; protein phosphatase complement(2485303..2486052) Clostridium botulinum A str. Hall 5399093 YP_001388204.1 CDS CLC_2361 NC_009698.1 2486071 2487099 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(2486071..2487099) Clostridium botulinum A str. Hall 5398523 YP_001388205.1 CDS sun NC_009698.1 2487111 2488439 R identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B complement(2487111..2488439) Clostridium botulinum A str. Hall 5398861 YP_001388206.1 CDS CLC_2363 NC_009698.1 2488460 2489176 R identified by match to protein family HMM PF04298; neutral zinc metallopeptidase complement(2488460..2489176) Clostridium botulinum A str. Hall 5400524 YP_001388207.1 CDS fmt NC_009698.1 2489494 2490435 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(2489494..2490435) Clostridium botulinum A str. Hall 5399646 YP_001388208.1 CDS def NC_009698.1 2490452 2490895 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2490452..2490895) Clostridium botulinum A str. Hall 5398922 YP_001388209.1 CDS priA NC_009698.1 2490923 2493130 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(2490923..2493130) Clostridium botulinum A str. Hall 5400632 YP_001388210.1 CDS coaBC NC_009698.1 2493468 2494655 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2493468..2494655) Clostridium botulinum A str. Hall 5400686 YP_001388211.1 CDS rpoZ NC_009698.1 2494657 2494875 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2494657..2494875) Clostridium botulinum A str. Hall 5401681 YP_001388212.1 CDS gmk NC_009698.1 2494856 2495485 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(2494856..2495485) Clostridium botulinum A str. Hall 5399279 YP_001388213.1 CDS CLC_2370 NC_009698.1 2495485 2495760 R identified by match to protein family HMM PF04025; hypothetical protein complement(2495485..2495760) Clostridium botulinum A str. Hall 5401176 YP_001388214.1 CDS CLC_2371 NC_009698.1 2495776 2496654 R identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein complement(2495776..2496654) Clostridium botulinum A str. Hall 5401322 YP_001388215.1 CDS ansA NC_009698.1 2496848 2497849 R identified by match to protein family HMM PF00710; type II L-asparaginase complement(2496848..2497849) Clostridium botulinum A str. Hall 5399172 YP_001388216.1 CDS CLC_2373 NC_009698.1 2498400 2498561 D hypothetical protein 2498400..2498561 Clostridium botulinum A str. Hall 5398263 YP_001388217.1 CDS spoIVA NC_009698.1 2499289 2500770 R identified by match to protein family HMM TIGR02836; stage IV sporulation protein A complement(2499289..2500770) Clostridium botulinum A str. Hall 5398475 YP_001388220.1 CDS gpsA NC_009698.1 2501367 2502365 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2501367..2502365) Clostridium botulinum A str. Hall 5401313 YP_001388221.1 CDS engA NC_009698.1 2502536 2503855 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2502536..2503855) Clostridium botulinum A str. Hall 5399137 YP_001388222.1 CDS CLC_2379 NC_009698.1 2503858 2505192 R identified by match to protein family HMM PF04459; hypothetical protein complement(2503858..2505192) Clostridium botulinum A str. Hall 5400761 YP_001388223.1 CDS phoU NC_009698.1 2505644 2506297 R identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(2505644..2506297) Clostridium botulinum A str. Hall 5399368 YP_001388224.1 CDS pstB NC_009698.1 2506327 2507076 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(2506327..2507076) Clostridium botulinum A str. Hall 5401434 YP_001388225.1 CDS pstA NC_009698.1 2507089 2507973 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(2507089..2507973) Clostridium botulinum A str. Hall 5399206 YP_001388226.1 CDS pstC NC_009698.1 2507973 2508896 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(2507973..2508896) Clostridium botulinum A str. Hall 5399976 YP_001388227.1 CDS pstS NC_009698.1 2509104 2509976 R identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein complement(2509104..2509976) Clostridium botulinum A str. Hall 5398704 YP_001388228.1 CDS CLC_2385 NC_009698.1 2510223 2511932 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; phosphate regulon sensor protein complement(2510223..2511932) Clostridium botulinum A str. Hall 5398646 YP_001388229.1 CDS CLC_2386 NC_009698.1 2511944 2512642 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon DNA-binding response regulator complement(2511944..2512642) Clostridium botulinum A str. Hall 5398564 YP_001388230.1 CDS CLC_2387 NC_009698.1 2512653 2513372 R identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(2512653..2513372) Clostridium botulinum A str. Hall 5401273 YP_001388231.1 CDS nrdR NC_009698.1 2513821 2514276 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR complement(2513821..2514276) Clostridium botulinum A str. Hall 5401573 YP_001388232.1 CDS CLC_2389 NC_009698.1 2514407 2514670 R identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein complement(2514407..2514670) Clostridium botulinum A str. Hall 5399658 YP_001388233.1 CDS sigG NC_009698.1 2514817 2515590 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG complement(2514817..2515590) Clostridium botulinum A str. Hall 5400966 YP_001388234.1 CDS sigE NC_009698.1 2515665 2516372 R sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE complement(2515665..2516372) Clostridium botulinum A str. Hall 5401374 YP_001388235.1 CDS spoIIGA NC_009698.1 2516384 2517181 R identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854; sporulation factor SpoIIGA complement(2516384..2517181) Clostridium botulinum A str. Hall 5399631 YP_001388236.1 CDS ftsZ NC_009698.1 2517494 2518603 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2517494..2518603) Clostridium botulinum A str. Hall 5399933 YP_001388237.1 CDS ftsA NC_009698.1 2518626 2519879 R identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(2518626..2519879) Clostridium botulinum A str. Hall 5398269 YP_001388238.1 CDS CLC_2395 NC_009698.1 2520036 2521310 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2520036..2521310) Clostridium botulinum A str. Hall 5398607 YP_001388239.1 CDS CLC_2396 NC_009698.1 2521748 2521891 D identified by Glimmer3; hypothetical protein 2521748..2521891 Clostridium botulinum A str. Hall 5399460 YP_001388240.1 CDS pilT NC_009698.1 2521969 2523021 R identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein complement(2521969..2523021) Clostridium botulinum A str. Hall 5400673 YP_001388241.1 CDS aroE NC_009698.1 2523023 2523799 R identified by match to protein family HMM PF01488; match to protein family HMM PF08501; shikimate 5-dehydrogenase complement(2523023..2523799) Clostridium botulinum A str. Hall 5399448 YP_001388242.1 CDS CLC_2399 NC_009698.1 2523938 2524228 R identified by match to protein family HMM PF04545; DNA-dependent RNA polymerase sigma subunit complement(2523938..2524228) Clostridium botulinum A str. Hall 5400284 YP_001388243.1 CDS CLC_2400 NC_009698.1 2524280 2524399 R identified by Glimmer3; hypothetical protein complement(2524280..2524399) Clostridium botulinum A str. Hall 5401256 YP_001388244.1 CDS CLC_2401 NC_009698.1 2524633 2524881 D identified by match to protein family HMM PF01381; DNA-binding protein 2524633..2524881 Clostridium botulinum A str. Hall 5398905 YP_001388245.1 CDS CLC_2402 NC_009698.1 2525081 2525326 D identified by match to protein family HMM PF01381; DNA-binding protein 2525081..2525326 Clostridium botulinum A str. Hall 5398325 YP_001388246.1 CDS CLC_2403 NC_009698.1 2525316 2525540 D identified by Glimmer3; hypothetical protein 2525316..2525540 Clostridium botulinum A str. Hall 5399230 YP_001388247.1 CDS CLC_2404 NC_009698.1 2525578 2526087 R lipoprotein complement(2525578..2526087) Clostridium botulinum A str. Hall 5401558 YP_001388248.1 CDS CLC_2405 NC_009698.1 2526155 2526304 R identified by Glimmer3; hypothetical protein complement(2526155..2526304) Clostridium botulinum A str. Hall 5400469 YP_001388249.1 CDS CLC_2406 NC_009698.1 2526282 2527190 R identified by match to protein family HMM PF01076; plasmid recombination enzyme complement(2526282..2527190) Clostridium botulinum A str. Hall 5400125 YP_001388250.1 CDS CLC_2407 NC_009698.1 2527181 2528803 R identified by match to protein family HMM PF02534; TraG/TraD family protein complement(2527181..2528803) Clostridium botulinum A str. Hall 5400286 YP_001388251.1 CDS CLC_2408 NC_009698.1 2529240 2529440 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2529240..2529440) Clostridium botulinum A str. Hall 5400879 YP_001388252.1 CDS CLC_2409 NC_009698.1 2529679 2530383 R identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(2529679..2530383) Clostridium botulinum A str. Hall 5401655 YP_001388253.1 CDS CLC_2410 NC_009698.1 2530423 2530617 R hypothetical protein complement(2530423..2530617) Clostridium botulinum A str. Hall 5398883 YP_001388254.1 CDS CLC_2411 NC_009698.1 2530631 2530885 R hypothetical protein complement(2530631..2530885) Clostridium botulinum A str. Hall 5399536 YP_001388255.1 CDS CLC_2412 NC_009698.1 2530964 2531839 R identified by Glimmer3; hypothetical protein complement(2530964..2531839) Clostridium botulinum A str. Hall 5401694 YP_001388256.1 CDS CLC_2413 NC_009698.1 2531991 2532164 R identified by Glimmer3; hypothetical protein complement(2531991..2532164) Clostridium botulinum A str. Hall 5398799 YP_001388257.1 CDS CLC_2414 NC_009698.1 2532388 2532930 R identified by Glimmer3; hypothetical protein complement(2532388..2532930) Clostridium botulinum A str. Hall 5400809 YP_001388258.1 CDS CLC_2415 NC_009698.1 2533415 2534083 R identified by match to protein family HMM TIGR02271; hypothetical protein complement(2533415..2534083) Clostridium botulinum A str. Hall 5400357 YP_001388259.1 CDS CLC_2416 NC_009698.1 2534162 2534638 R identified by match to protein family HMM TIGR02271; hypothetical protein complement(2534162..2534638) Clostridium botulinum A str. Hall 5399791 YP_001388260.1 CDS CLC_2419 NC_009698.1 2535691 2535975 R identified by Glimmer3; hypothetical protein complement(2535691..2535975) Clostridium botulinum A str. Hall 5401765 YP_001388261.1 CDS CLC_2420 NC_009698.1 2535986 2536789 R hypothetical protein complement(2535986..2536789) Clostridium botulinum A str. Hall 5398645 YP_001388262.1 CDS CLC_2421 NC_009698.1 2536770 2537573 R identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; recombinase complement(2536770..2537573) Clostridium botulinum A str. Hall 5398326 YP_001388264.1 CDS CLC_2423 NC_009698.1 2538221 2538373 D identified by Glimmer3; hypothetical protein 2538221..2538373 Clostridium botulinum A str. Hall 5398398 YP_001388265.1 CDS CLC_2424 NC_009698.1 2538591 2540261 R identified by match to protein family HMM PF00905; penicillin-binding protein complement(2538591..2540261) Clostridium botulinum A str. Hall 5400228 YP_001388266.1 CDS udk NC_009698.1 2540347 2540967 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2540347..2540967) Clostridium botulinum A str. Hall 5398811 YP_001388267.1 CDS CLC_2426 NC_009698.1 2541115 2542341 R identified by match to protein family HMM PF01136; U32 family peptidase complement(2541115..2542341) Clostridium botulinum A str. Hall 5401328 YP_001388268.1 CDS CLC_2427 NC_009698.1 2542334 2542990 R identified by match to protein family HMM PF01596; O-methyltransferase complement(2542334..2542990) Clostridium botulinum A str. Hall 5398541 YP_001388269.1 CDS CLC_2428 NC_009698.1 2543073 2544104 R identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(2543073..2544104) Clostridium botulinum A str. Hall 5400964 YP_001388270.1 CDS typA NC_009698.1 2544182 2546008 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(2544182..2546008) Clostridium botulinum A str. Hall 5400299 YP_001388271.1 CDS CLC_2430 NC_009698.1 2546652 2548361 R identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolizing metallo-beta-lactamase complement(2546652..2548361) Clostridium botulinum A str. Hall 5400271 YP_001388272.1 CDS CLC_2431 NC_009698.1 2548409 2548861 R identified by match to protein family HMM PF01475; FUR family transcriptional regulator complement(2548409..2548861) Clostridium botulinum A str. Hall 5401104 YP_001388273.1 CDS CLC_2432 NC_009698.1 2548983 2549237 R identified by match to protein family HMM PF06949; hypothetical protein complement(2548983..2549237) Clostridium botulinum A str. Hall 5401427 YP_001388274.1 CDS CLC_2433 NC_009698.1 2549251 2549664 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2549251..2549664) Clostridium botulinum A str. Hall 5400502 YP_001388275.1 CDS CLC_2434 NC_009698.1 2549871 2550122 R identified by match to protein family HMM PF06135; hypothetical protein complement(2549871..2550122) Clostridium botulinum A str. Hall 5398414 YP_001388276.1 CDS alaS NC_009698.1 2550237 2552876 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2550237..2552876) Clostridium botulinum A str. Hall 5400398 YP_001388277.1 CDS CLC_2436 NC_009698.1 2553375 2554403 R identified by match to protein family HMM PF01594; hypothetical protein complement(2553375..2554403) Clostridium botulinum A str. Hall 5400627 YP_001388278.1 CDS CLC_2437 NC_009698.1 2554416 2554904 R PRC-barrel domain-containing protein complement(2554416..2554904) Clostridium botulinum A str. Hall 5401518 YP_001388280.1 CDS CLC_2439 NC_009698.1 2555086 2555514 R identified by match to protein family HMM PF01592; iron-sulfur cluster assembly protein complement(2555086..2555514) Clostridium botulinum A str. Hall 5401722 YP_001388281.1 CDS iscS-2 NC_009698.1 2555516 2556709 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase complement(2555516..2556709) Clostridium botulinum A str. Hall 5400887 YP_001388282.1 CDS CLC_2441 NC_009698.1 2556702 2557148 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrF2 family protein complement(2556702..2557148) Clostridium botulinum A str. Hall 5400894 YP_001388283.1 CDS CLC_2442 NC_009698.1 2557368 2558618 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(2557368..2558618) Clostridium botulinum A str. Hall 5399125 YP_001388284.1 CDS hisK NC_009698.1 2559016 2559783 R identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase complement(2559016..2559783) Clostridium botulinum A str. Hall 5399182 YP_001388285.1 CDS CLC_2444 NC_009698.1 2560150 2561058 R identified by match to protein family HMM PF03547; auxin efflux carrier family protein complement(2560150..2561058) Clostridium botulinum A str. Hall 5398637 YP_001388286.1 CDS CLC_2445 NC_009698.1 2561166 2562032 R identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein complement(2561166..2562032) Clostridium botulinum A str. Hall 5400715 YP_001388287.1 CDS CLC_2446 NC_009698.1 2562360 2562944 D identified by match to protein family HMM PF01206; hypothetical protein 2562360..2562944 Clostridium botulinum A str. Hall 5399803 YP_001388288.1 CDS CLC_2447 NC_009698.1 2563196 2564185 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(2563196..2564185) Clostridium botulinum A str. Hall 5399667 YP_001388289.1 CDS CLC_2449 NC_009698.1 2566420 2567754 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(2566420..2567754) Clostridium botulinum A str. Hall 5401156 YP_001388290.1 CDS CLC_2450 NC_009698.1 2568131 2568784 D hypothetical protein 2568131..2568784 Clostridium botulinum A str. Hall 5400446 YP_001388291.1 CDS CLC_2451 NC_009698.1 2568922 2569398 R copper amine oxidase domain-containing protein complement(2568922..2569398) Clostridium botulinum A str. Hall 5401547 YP_001388292.1 CDS CLC_2452 NC_009698.1 2569762 2573523 R identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase complement(2569762..2573523) Clostridium botulinum A str. Hall 5401779 YP_001388293.1 CDS CLC_2453 NC_009698.1 2573722 2575071 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(2573722..2575071) Clostridium botulinum A str. Hall 5400124 YP_001388294.1 CDS CLC_2454 NC_009698.1 2575068 2577545 R identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase complement(2575068..2577545) Clostridium botulinum A str. Hall 5400525 YP_001388295.1 CDS CLC_2455 NC_009698.1 2577550 2577825 R acyl carrier protein complement(2577550..2577825) Clostridium botulinum A str. Hall 5400817 YP_001388296.1 CDS CLC_2456 NC_009698.1 2577831 2579369 R identified by match to protein family HMM PF00501; acyl-CoA synthetase complement(2577831..2579369) Clostridium botulinum A str. Hall 5401612 YP_001388297.1 CDS CLC_2457 NC_009698.1 2579386 2580396 R identified by match to protein family HMM PF08541; match to protein family HMM PF08545; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(2579386..2580396) Clostridium botulinum A str. Hall 5400855 YP_001388298.1 CDS CLC_2458 NC_009698.1 2580405 2581262 R bacT protein complement(2580405..2581262) Clostridium botulinum A str. Hall 5399524 YP_001388299.1 CDS CLC_2459 NC_009698.1 2581303 2583132 R identified by match to protein family HMM PF00501; match to protein family HMM PF00550; nonribosomal peptide synthetase complement(2581303..2583132) Clostridium botulinum A str. Hall 5398887 YP_001388300.1 CDS CLC_2460 NC_009698.1 2583173 2583685 R identified by match to protein family HMM PF00583; acetyltransferase complement(2583173..2583685) Clostridium botulinum A str. Hall 5400063 YP_001388301.1 CDS CLC_2461 NC_009698.1 2583689 2583937 R D-alanyl carrier protein-like protein complement(2583689..2583937) Clostridium botulinum A str. Hall 5399231 YP_001388302.1 CDS CLC_2462 NC_009698.1 2583946 2584962 R hypothetical protein complement(2583946..2584962) Clostridium botulinum A str. Hall 5399805 YP_001388303.1 CDS CLC_2463 NC_009698.1 2584959 2586152 R seryl-tRNA synthetase complement(2584959..2586152) Clostridium botulinum A str. Hall 5399012 YP_001388304.1 CDS CLC_2464 NC_009698.1 2586171 2586911 R identified by Glimmer3; hypothetical protein complement(2586171..2586911) Clostridium botulinum A str. Hall 5400459 YP_001388305.1 CDS argF NC_009698.1 2587377 2588378 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2587377..2588378) Clostridium botulinum A str. Hall 5399525 YP_001388306.1 CDS arcC NC_009698.1 2588473 2589417 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(2588473..2589417) Clostridium botulinum A str. Hall 5400895 YP_001388307.1 CDS glyA NC_009698.1 2589981 2591222 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2589981..2591222) Clostridium botulinum A str. Hall 5399887 YP_001388308.1 CDS CLC_2468 NC_009698.1 2591396 2592166 D identified by match to protein family HMM PF06738; hypothetical protein 2591396..2592166 Clostridium botulinum A str. Hall 5400153 YP_001388309.1 CDS CLC_2469 NC_009698.1 2592163 2592651 D hypothetical protein 2592163..2592651 Clostridium botulinum A str. Hall 5399613 YP_001388310.1 CDS CLC_2470 NC_009698.1 2592718 2592987 R identified by match to protein family HMM PF02583; hypothetical protein complement(2592718..2592987) Clostridium botulinum A str. Hall 5399980 YP_001388311.1 CDS CLC_2471 NC_009698.1 2593188 2594012 R identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase complement(2593188..2594012) Clostridium botulinum A str. Hall 5398456 YP_001388312.1 CDS CLC_2472 NC_009698.1 2594125 2594601 D lipoprotein 2594125..2594601 Clostridium botulinum A str. Hall 5398308 YP_001388313.1 CDS CLC_2473 NC_009698.1 2595012 2599877 D identified by Glimmer3; hypothetical protein 2595012..2599877 Clostridium botulinum A str. Hall 5398500 YP_001388314.1 CDS CLC_2474 NC_009698.1 2599954 2601177 D identified by Glimmer3; hypothetical protein 2599954..2601177 Clostridium botulinum A str. Hall 5401057 YP_001388315.1 CDS CLC_2475 NC_009698.1 2601331 2602386 D identified by Glimmer3; hypothetical protein 2601331..2602386 Clostridium botulinum A str. Hall 5399158 YP_001388316.1 CDS CLC_2476 NC_009698.1 2602725 2603417 D hypothetical protein 2602725..2603417 Clostridium botulinum A str. Hall 5400491 YP_001388317.1 CDS CLC_2477 NC_009698.1 2603847 2605250 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 complement(2603847..2605250) Clostridium botulinum A str. Hall 5398367 YP_001388318.1 CDS CLC_2478 NC_009698.1 2605372 2606307 R identified by match to protein family HMM PF01544; magnesium and cobalt transport protein CorA complement(2605372..2606307) Clostridium botulinum A str. Hall 5400411 YP_001388319.1 CDS CLC_2479 NC_009698.1 2606733 2607287 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(2606733..2607287) Clostridium botulinum A str. Hall 5400597 YP_001388320.1 CDS hprK NC_009698.1 2607280 2608203 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(2607280..2608203) Clostridium botulinum A str. Hall 5399036 YP_001388321.1 CDS CLC_2481 NC_009698.1 2608235 2608423 R identified by match to protein family HMM PF05979; hypothetical protein complement(2608235..2608423) Clostridium botulinum A str. Hall 5400321 YP_001388322.1 CDS CLC_2482 NC_009698.1 2608594 2609331 R identified by match to protein family HMM PF09335; DedA family protein complement(2608594..2609331) Clostridium botulinum A str. Hall 5398260 YP_001388323.1 CDS CLC_2483 NC_009698.1 2609297 2610016 R identified by match to protein family HMM PF09335; DedA family protein complement(2609297..2610016) Clostridium botulinum A str. Hall 5399588 YP_001388324.1 CDS CLC_2484 NC_009698.1 2610125 2611270 R identified by match to protein family HMM PF02754; hypothetical protein complement(2610125..2611270) Clostridium botulinum A str. Hall 5398583 YP_001388325.1 CDS CLC_2485 NC_009698.1 2611270 2612256 R hypothetical protein complement(2611270..2612256) Clostridium botulinum A str. Hall 5401702 YP_001388326.1 CDS CLC_2486 NC_009698.1 2612246 2612947 R hypothetical protein complement(2612246..2612947) Clostridium botulinum A str. Hall 5399816 YP_001388327.1 CDS CLC_2487 NC_009698.1 2612947 2613621 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(2612947..2613621) Clostridium botulinum A str. Hall 5401152 YP_001388328.1 CDS CLC_2488 NC_009698.1 2613808 2614782 D identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 2613808..2614782 Clostridium botulinum A str. Hall 5401754 YP_001388329.1 CDS glpX NC_009698.1 2615016 2615990 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(2615016..2615990) Clostridium botulinum A str. Hall 5399475 YP_001388330.1 CDS CLC_2490 NC_009698.1 2616474 2616650 D identified by Glimmer3; hypothetical protein 2616474..2616650 Clostridium botulinum A str. Hall 5399544 YP_001388331.1 CDS CLC_2491 NC_009698.1 2616682 2617080 R hypothetical protein complement(2616682..2617080) Clostridium botulinum A str. Hall 5398678 YP_001388332.1 CDS CLC_2492 NC_009698.1 2617535 2618704 R identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin complement(2617535..2618704) Clostridium botulinum A str. Hall 5398273 YP_001388333.1 CDS CLC_2493 NC_009698.1 2619251 2619757 R hypothetical protein complement(2619251..2619757) Clostridium botulinum A str. Hall 5401204 YP_001388334.1 CDS CLC_2494 NC_009698.1 2620809 2621672 R identified by match to protein family HMM PF01156; IUNH family nucleoside hydrolase complement(2620809..2621672) Clostridium botulinum A str. Hall 5400038 YP_001388335.1 CDS def-3 NC_009698.1 2621690 2622226 R identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase complement(2621690..2622226) Clostridium botulinum A str. Hall 5399903 YP_001388336.1 CDS CLC_2496 NC_009698.1 2622443 2623093 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(2622443..2623093) Clostridium botulinum A str. Hall 5399454 YP_001388337.1 CDS CLC_2497 NC_009698.1 2623122 2624507 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(2623122..2624507) Clostridium botulinum A str. Hall 5398354 YP_001388338.1 CDS CLC_2498 NC_009698.1 2624500 2626278 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(2624500..2626278) Clostridium botulinum A str. Hall 5398287 YP_001388339.1 CDS CLC_2499 NC_009698.1 2626292 2626600 R produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F complement(2626292..2626600) Clostridium botulinum A str. Hall 5400470 YP_001388340.1 CDS CLC_2500 NC_009698.1 2626593 2627594 R produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C complement(2626593..2627594) Clostridium botulinum A str. Hall 5401139 YP_001388341.1 CDS CLC_2501 NC_009698.1 2627609 2628208 R identified by match to protein family HMM PF01991; V-type ATPase, E subunit complement(2627609..2628208) Clostridium botulinum A str. Hall 5398947 YP_001388342.1 CDS CLC_2502 NC_009698.1 2628247 2628723 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(2628247..2628723) Clostridium botulinum A str. Hall 5401061 YP_001388343.1 CDS CLC_2503 NC_009698.1 2628736 2630697 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(2628736..2630697) Clostridium botulinum A str. Hall 5399211 YP_001388344.1 CDS CLC_2504 NC_009698.1 2630684 2631010 R V-type ATPase, G subunit complement(2630684..2631010) Clostridium botulinum A str. Hall 5399470 YP_001388345.1 CDS CLC_2505 NC_009698.1 2631316 2632995 R identified by match to protein family HMM PF02310; match to protein family HMM PF04055; B12-binding Fe-S oxidoreductase complement(2631316..2632995) Clostridium botulinum A str. Hall 5400166 YP_001388346.1 CDS CLC_2506 NC_009698.1 2632970 2633545 R hypothetical protein complement(2632970..2633545) Clostridium botulinum A str. Hall 5399254 YP_001388347.1 CDS CLC_2507 NC_009698.1 2633729 2634436 R identified by match to protein family HMM PF00882; phospholipase C complement(2633729..2634436) Clostridium botulinum A str. Hall 5399198 YP_001388348.1 CDS CLC_2509 NC_009698.1 2635696 2638242 R identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P complement(2635696..2638242) Clostridium botulinum A str. Hall 5401264 YP_001388349.1 CDS CLC_2510 NC_009698.1 2638561 2640204 D catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2638561..2640204 Clostridium botulinum A str. Hall 5398613 YP_001388350.1 CDS CLC_2511 NC_009698.1 2640420 2640998 R identified by Glimmer3; hypothetical protein complement(2640420..2640998) Clostridium botulinum A str. Hall 5398314 YP_001388351.1 CDS flgG NC_009698.1 2641326 2642117 R makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG complement(2641326..2642117) Clostridium botulinum A str. Hall 5399504 YP_001388352.1 CDS flgG NC_009698.1 2642172 2642939 R makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG complement(2642172..2642939) Clostridium botulinum A str. Hall 5398603 YP_001388353.1 CDS CLC_2514 NC_009698.1 2643005 2643121 R hypothetical protein complement(2643005..2643121) Clostridium botulinum A str. Hall 5400402 YP_001388354.1 CDS CLC_2515 NC_009698.1 2643199 2643837 R hypothetical protein complement(2643199..2643837) Clostridium botulinum A str. Hall 5400991 YP_001388355.1 CDS fliA NC_009698.1 2643866 2644594 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; RNA polymerase sigma factor for flagellar operon FliA complement(2643866..2644594) Clostridium botulinum A str. Hall 5400608 YP_001388356.1 CDS CLC_2517 NC_009698.1 2644608 2645267 R identified by match to protein family HMM PF07238; hypothetical protein complement(2644608..2645267) Clostridium botulinum A str. Hall 5399739 YP_001388357.1 CDS flhG NC_009698.1 2645282 2646142 R identified by match to protein family HMM PF01656; flagellar biosynthesis protein FlhG complement(2645282..2646142) Clostridium botulinum A str. Hall 5400678 YP_001388358.1 CDS flhF NC_009698.1 2646136 2647362 R positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF complement(2646136..2647362) Clostridium botulinum A str. Hall 5401713 YP_001388359.1 CDS flhA NC_009698.1 2647359 2649425 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(2647359..2649425) Clostridium botulinum A str. Hall 5401717 YP_001388360.1 CDS CLC_2521 NC_009698.1 2649453 2651282 R FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB complement(2649453..2651282) Clostridium botulinum A str. Hall 5401077 YP_001388361.1 CDS fliQ NC_009698.1 2651316 2651585 R identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthesis protein FliQ complement(2651316..2651585) Clostridium botulinum A str. Hall 5400791 YP_001388362.1 CDS fliP NC_009698.1 2651597 2652373 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(2651597..2652373) Clostridium botulinum A str. Hall 5399797 YP_001388363.1 CDS CLC_2524 NC_009698.1 2652357 2652764 R flagellar biosynthesis domain-containing protein complement(2652357..2652764) Clostridium botulinum A str. Hall 5398662 YP_001388364.1 CDS motB-2 NC_009698.1 2653354 2654097 R identified by match to protein family HMM PF00691; chemotaxis protein MotB complement(2653354..2654097) Clostridium botulinum A str. Hall 5401502 YP_001388365.1 CDS motA-2 NC_009698.1 2654090 2654902 R identified by match to protein family HMM PF01618; chemotaxis protein MotA complement(2654090..2654902) Clostridium botulinum A str. Hall 5399685 YP_001388366.1 CDS CLC_2528 NC_009698.1 2654899 2655108 R identified by match to protein family HMM PF06289; flagellar protein FlbD complement(2654899..2655108) Clostridium botulinum A str. Hall 5400420 YP_001388367.1 CDS flgE NC_009698.1 2655342 2656379 R identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook protein flgE complement(2655342..2656379) Clostridium botulinum A str. Hall 5401494 YP_001388368.1 CDS CLC_2530 NC_009698.1 2656461 2656880 R identified by match to protein family HMM TIGR02530; flagellar operon protein complement(2656461..2656880) Clostridium botulinum A str. Hall 5400436 YP_001388369.1 CDS flgD NC_009698.1 2656895 2657692 R identified by match to protein family HMM PF03963; flagellar hook capping protein complement(2656895..2657692) Clostridium botulinum A str. Hall 5401830 YP_001388370.1 CDS fliK NC_009698.1 2657722 2659110 R identified by match to protein family HMM PF02120; flagellar hook-length control protein complement(2657722..2659110) Clostridium botulinum A str. Hall 5399994 YP_001388371.1 CDS CLC_2533 NC_009698.1 2659116 2659553 R identified by match to protein family HMM TIGR02473; flagellar protein FliJ complement(2659116..2659553) Clostridium botulinum A str. Hall 5401817 YP_001388372.1 CDS fliI NC_009698.1 2659657 2660973 R identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; flagellar protein export ATPase FliI complement(2659657..2660973) Clostridium botulinum A str. Hall 5399745 YP_001388373.1 CDS fliH NC_009698.1 2661013 2661789 R flagellar assembly protein FliH complement(2661013..2661789) Clostridium botulinum A str. Hall 5400273 YP_001388374.1 CDS fliG NC_009698.1 2661773 2662786 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(2661773..2662786) Clostridium botulinum A str. Hall 5398390 YP_001388375.1 CDS fliF NC_009698.1 2662793 2664373 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(2662793..2664373) Clostridium botulinum A str. Hall 5398267 YP_001388376.1 CDS fliE NC_009698.1 2664389 2664703 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(2664389..2664703) Clostridium botulinum A str. Hall 5401334 YP_001388377.1 CDS flgC NC_009698.1 2664715 2665149 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(2664715..2665149) Clostridium botulinum A str. Hall 5399608 YP_001388378.1 CDS flgB NC_009698.1 2665247 2665648 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal-body rod protein FlgB complement(2665247..2665648) Clostridium botulinum A str. Hall 5400190 YP_001388379.2 CDS CLC_2541 NC_009698.1 2666220 2667074 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(2666220..2667074) Clostridium botulinum A str. Hall 5398835 YP_001388380.1 CDS CLC_2542 NC_009698.1 2667218 2667586 R hypothetical protein complement(2667218..2667586) Clostridium botulinum A str. Hall 5398528 YP_001388381.1 CDS argH NC_009698.1 2668126 2669448 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(2668126..2669448) Clostridium botulinum A str. Hall 5400970 YP_001388382.1 CDS argG NC_009698.1 2669470 2670663 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(2669470..2670663) Clostridium botulinum A str. Hall 5398862 YP_001388383.1 CDS CLC_2545 NC_009698.1 2670958 2671296 R hypothetical protein complement(2670958..2671296) Clostridium botulinum A str. Hall 5401498 YP_001388384.1 CDS CLC_2546 NC_009698.1 2671319 2671663 R hypothetical protein complement(2671319..2671663) Clostridium botulinum A str. Hall 5400326 YP_001388385.1 CDS cls NC_009698.1 2671843 2673273 R identified by match to protein family HMM PF00614; cardiolipin synthetase complement(2671843..2673273) Clostridium botulinum A str. Hall 5399698 YP_001388386.1 CDS CLC_2548 NC_009698.1 2673599 2674489 D hypothetical protein 2673599..2674489 Clostridium botulinum A str. Hall 5399094 YP_001388387.1 CDS CLC_2549 NC_009698.1 2674664 2674849 R identified by Glimmer3; hypothetical protein complement(2674664..2674849) Clostridium botulinum A str. Hall 5399080 YP_001388388.1 CDS CLC_2550 NC_009698.1 2675132 2675581 R identified by match to protein family HMM PF04892; VanZ family protein complement(2675132..2675581) Clostridium botulinum A str. Hall 5400288 YP_001388389.1 CDS CLC_2551 NC_009698.1 2675832 2677262 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(2675832..2677262) Clostridium botulinum A str. Hall 5400706 YP_001388390.1 CDS CLC_2552 NC_009698.1 2677302 2678219 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(2677302..2678219) Clostridium botulinum A str. Hall 5400646 YP_001388391.1 CDS CLC_2553 NC_009698.1 2678248 2679315 R identified by match to protein family HMM PF03102; match to protein family HMM PF08666; neuB family protein complement(2678248..2679315) Clostridium botulinum A str. Hall 5398692 YP_001388392.1 CDS CLC_2554 NC_009698.1 2679347 2681008 R identified by match to protein family HMM PF02348; match to protein family HMM PF04101; cytidyltransferase-like protein complement(2679347..2681008) Clostridium botulinum A str. Hall 5400246 YP_001388393.1 CDS CLC_2555 NC_009698.1 2681023 2682192 R hypothetical protein complement(2681023..2682192) Clostridium botulinum A str. Hall 5399894 YP_001388394.1 CDS CLC_2556 NC_009698.1 2682226 2683179 R identified by match to protein family HMM PF05855; exopolysaccharide biosynthesis protein complement(2682226..2683179) Clostridium botulinum A str. Hall 5401598 YP_001388395.1 CDS CLC_2557 NC_009698.1 2683206 2683976 R exopolysaccharide biosynthesis protein complement(2683206..2683976) Clostridium botulinum A str. Hall 5398669 YP_001388396.1 CDS glf NC_009698.1 2683976 2685076 R identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase complement(2683976..2685076) Clostridium botulinum A str. Hall 5400146 YP_001388397.1 CDS CLC_2559 NC_009698.1 2685181 2685858 R identified by match to protein family HMM PF02397; undecaprenyl-phosphate galactosephosphotransferase complement(2685181..2685858) Clostridium botulinum A str. Hall 5401770 YP_001388398.1 CDS CLC_2560 NC_009698.1 2686069 2686779 R identified by match to protein family HMM TIGR01007; capsular exopolysaccharide family protein complement(2686069..2686779) Clostridium botulinum A str. Hall 5400234 YP_001388399.1 CDS CLC_2561 NC_009698.1 2686798 2687571 R identified by match to protein family HMM PF02811; exopolysaccharide biosynthesis protein complement(2686798..2687571) Clostridium botulinum A str. Hall 5400279 YP_001388400.1 CDS CLC_2562 NC_009698.1 2687587 2688264 R identified by match to protein family HMM PF02706; capsular polysaccharide biosynthsis protein complement(2687587..2688264) Clostridium botulinum A str. Hall 5398485 YP_001388401.1 CDS CLC_2563 NC_009698.1 2688299 2689261 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator complement(2688299..2689261) Clostridium botulinum A str. Hall 5399971 YP_001388402.1 CDS CLC_2564 NC_009698.1 2689699 2689854 R hypothetical protein complement(2689699..2689854) Clostridium botulinum A str. Hall 5399867 YP_001388403.1 CDS CLC_2565 NC_009698.1 2690004 2690177 R identified by Glimmer3; hypothetical protein complement(2690004..2690177) Clostridium botulinum A str. Hall 5400666 YP_001388404.1 CDS CLC_2566 NC_009698.1 2690298 2690465 R hypothetical protein complement(2690298..2690465) Clostridium botulinum A str. Hall 5399902 YP_001388405.1 CDS CLC_2567 NC_009698.1 2690949 2691797 R identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein complement(2690949..2691797) Clostridium botulinum A str. Hall 5400783 YP_001388406.1 CDS fliC NC_009698.1 2691874 2692692 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(2691874..2692692) Clostridium botulinum A str. Hall 5400943 YP_001388407.1 CDS CLC_2569 NC_009698.1 2692877 2693374 R hypothetical protein complement(2692877..2693374) Clostridium botulinum A str. Hall 5399104 YP_001388408.1 CDS CLC_2570 NC_009698.1 2693460 2694929 R hypothetical protein complement(2693460..2694929) Clostridium botulinum A str. Hall 5398437 YP_001388409.1 CDS CLC_2571 NC_009698.1 2694945 2695055 R identified by Glimmer3; hypothetical protein complement(2694945..2695055) Clostridium botulinum A str. Hall 5400355 YP_001388410.1 CDS CLC_2572 NC_009698.1 2695163 2696164 R glycosyl transferase-like protein complement(2695163..2696164) Clostridium botulinum A str. Hall 5401274 YP_001388411.1 CDS CLC_2573 NC_009698.1 2696661 2697665 R identified by match to protein family HMM PF00657; GDSL family lipase/acylhydrolase complement(2696661..2697665) Clostridium botulinum A str. Hall 5398527 YP_001388412.1 CDS CLC_2574 NC_009698.1 2697755 2698852 R hypothetical protein complement(2697755..2698852) Clostridium botulinum A str. Hall 5398768 YP_001388413.1 CDS CLC_2575 NC_009698.1 2698869 2700047 R identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; glycosyl transferase family protein complement(2698869..2700047) Clostridium botulinum A str. Hall 5401446 YP_001388414.1 CDS CLC_2576 NC_009698.1 2700075 2701253 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(2700075..2701253) Clostridium botulinum A str. Hall 5399593 YP_001388415.1 CDS CLC_2577 NC_009698.1 2701358 2701885 R identified by Glimmer3; hypothetical protein complement(2701358..2701885) Clostridium botulinum A str. Hall 5399062 YP_001388416.1 CDS CLC_2578 NC_009698.1 2701893 2703113 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(2701893..2703113) Clostridium botulinum A str. Hall 5398930 YP_001388417.1 CDS CLC_2579 NC_009698.1 2703139 2705136 R asparagine synthetase complement(2703139..2705136) Clostridium botulinum A str. Hall 5399756 YP_001388418.1 CDS CLC_2580 NC_009698.1 2705173 2706594 R identified by Glimmer3; hypothetical protein complement(2705173..2706594) Clostridium botulinum A str. Hall 5399604 YP_001388419.1 CDS CLC_2581 NC_009698.1 2706640 2708079 R hypothetical protein complement(2706640..2708079) Clostridium botulinum A str. Hall 5400126 YP_001388422.1 CDS CLC_2584 NC_009698.1 2709227 2710432 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(2709227..2710432) Clostridium botulinum A str. Hall 5398686 YP_001388423.1 CDS CLC_2585 NC_009698.1 2710519 2711826 R identified by Glimmer3; hypothetical protein complement(2710519..2711826) Clostridium botulinum A str. Hall 5399827 YP_001388424.1 CDS CLC_2586 NC_009698.1 2711848 2712624 R identified by match to protein family HMM PF04989; cephalosporin hydroxylase complement(2711848..2712624) Clostridium botulinum A str. Hall 5399411 YP_001388425.1 CDS CLC_2587 NC_009698.1 2712621 2713796 R identified by match to protein family HMM PF08241; hypothetical protein complement(2712621..2713796) Clostridium botulinum A str. Hall 5400015 YP_001388426.1 CDS CLC_2588 NC_009698.1 2713786 2714706 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase complement(2713786..2714706) Clostridium botulinum A str. Hall 5398241 YP_001388427.1 CDS rfbC NC_009698.1 2714703 2715236 R identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2714703..2715236) Clostridium botulinum A str. Hall 5401109 YP_001388428.1 CDS CLC_2590 NC_009698.1 2715237 2716472 R identified by match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484; methyltransferase-like protein complement(2715237..2716472) Clostridium botulinum A str. Hall 5399132 YP_001388429.1 CDS CLC_2591 NC_009698.1 2716519 2717622 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2716519..2717622) Clostridium botulinum A str. Hall 5398538 YP_001388430.1 CDS CLC_2592 NC_009698.1 2717624 2718400 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase complement(2717624..2718400) Clostridium botulinum A str. Hall 5399136 YP_001388431.1 CDS CLC_2593 NC_009698.1 2718419 2720830 R identified by Glimmer3; hypothetical protein complement(2718419..2720830) Clostridium botulinum A str. Hall 5401244 YP_001388432.1 CDS CLC_2594 NC_009698.1 2720921 2721973 R identified by match to protein family HMM PF03102; match to protein family HMM PF08666; NeuB family protein complement(2720921..2721973) Clostridium botulinum A str. Hall 5400693 YP_001388433.1 CDS CLC_2595 NC_009698.1 2722115 2722870 R identified by match to protein family HMM PF02348; polysaccharide biosynthesis protein complement(2722115..2722870) Clostridium botulinum A str. Hall 5401250 YP_001388434.1 CDS CLC_2596 NC_009698.1 2722993 2723664 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase complement(2722993..2723664) Clostridium botulinum A str. Hall 5400587 YP_001388435.1 CDS CLC_2597 NC_009698.1 2723704 2724732 R undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein complement(2723704..2724732) Clostridium botulinum A str. Hall 5400590 YP_001388436.1 CDS CLC_2598 NC_009698.1 2724953 2726017 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase complement(2724953..2726017) Clostridium botulinum A str. Hall 5399848 YP_001388437.1 CDS CLC_2599 NC_009698.1 2726137 2727162 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; exopolysaccharide biosynthesis protein complement(2726137..2727162) Clostridium botulinum A str. Hall 5401828 YP_001388438.1 CDS CLC_2600 NC_009698.1 2727203 2728624 R identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; glycosyl transferase family protein complement(2727203..2728624) Clostridium botulinum A str. Hall 5399900 YP_001388439.1 CDS CLC_2601 NC_009698.1 2728633 2728980 R identified by similarity to PIR:C97171; hypothetical protein complement(2728633..2728980) Clostridium botulinum A str. Hall 5400296 YP_001388440.1 CDS CLC_2602 NC_009698.1 2728984 2730687 R identified by match to protein family HMM PF01973; hypothetical protein complement(2728984..2730687) Clostridium botulinum A str. Hall 5401218 YP_001388441.1 CDS CLC_2603 NC_009698.1 2730712 2732613 R identified by match to protein family HMM PF00515; match to protein family HMM PF00535; glycosyl transferase family protein complement(2730712..2732613) Clostridium botulinum A str. Hall 5399973 YP_001388442.1 CDS CLC_2604 NC_009698.1 2732836 2733663 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(2732836..2733663) Clostridium botulinum A str. Hall 5398423 YP_001388443.1 CDS CLC_2605 NC_009698.1 2733877 2734704 R identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin complement(2733877..2734704) Clostridium botulinum A str. Hall 5400905 YP_001388444.1 CDS CLC_2606 NC_009698.1 2734854 2735195 R hypothetical protein complement(2734854..2735195) Clostridium botulinum A str. Hall 5400362 YP_001388445.1 CDS fliD NC_009698.1 2735222 2737657 R identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar hook-associated protein 2 complement(2735222..2737657) Clostridium botulinum A str. Hall 5401335 YP_001388446.1 CDS fliS NC_009698.1 2737711 2738100 R identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS complement(2737711..2738100) Clostridium botulinum A str. Hall 5401240 YP_001388447.1 CDS CLC_2609 NC_009698.1 2738137 2738436 R hypothetical protein complement(2738137..2738436) Clostridium botulinum A str. Hall 5399652 YP_001388448.1 CDS CLC_2610 NC_009698.1 2738491 2738847 R identified by match to protein family HMM PF03646; flagellar protein FlaG complement(2738491..2738847) Clostridium botulinum A str. Hall 5399272 YP_001388449.1 CDS csrA NC_009698.1 2738863 2739081 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(2738863..2739081) Clostridium botulinum A str. Hall 5398694 YP_001388450.1 CDS CLC_2612 NC_009698.1 2739081 2739512 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(2739081..2739512) Clostridium botulinum A str. Hall 5401051 YP_001388451.1 CDS flgL NC_009698.1 2739601 2740563 R identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550; flagellar hook-associated protein 3 complement(2739601..2740563) Clostridium botulinum A str. Hall 5398706 YP_001388452.1 CDS flgK NC_009698.1 2740581 2742449 R identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK complement(2740581..2742449) Clostridium botulinum A str. Hall 5399451 YP_001388453.1 CDS CLC_2615 NC_009698.1 2742738 2743142 R identified by match to protein family HMM PF05130; flgN family protein complement(2742738..2743142) Clostridium botulinum A str. Hall 5399221 YP_001388454.1 CDS CLC_2616 NC_009698.1 2743142 2743423 R identified by match to protein family HMM PF04316; regulator of flagellin synthesis FlgM complement(2743142..2743423) Clostridium botulinum A str. Hall 5398599 YP_001388455.1 CDS fliN NC_009698.1 2743920 2745080 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(2743920..2745080) Clostridium botulinum A str. Hall 5401142 YP_001388456.1 CDS fliM NC_009698.1 2745073 2746068 R identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM complement(2745073..2746068) Clostridium botulinum A str. Hall 5401289 YP_001388457.1 CDS CLC_2619 NC_009698.1 2746096 2746491 R identified by match to protein family HMM PF01584; chemotaxis protein CheW complement(2746096..2746491) Clostridium botulinum A str. Hall 5401506 YP_001388458.1 CDS cheY NC_009698.1 2746591 2746950 R identified by match to protein family HMM PF00072; chemotaxis protein CheY complement(2746591..2746950) Clostridium botulinum A str. Hall 5401464 YP_001388459.1 CDS cheC NC_009698.1 2746978 2747577 R identified by match to protein family HMM PF04509; chemotaxis protein CheC complement(2746978..2747577) Clostridium botulinum A str. Hall 5399336 YP_001388460.1 CDS cheA NC_009698.1 2747603 2749678 R identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA complement(2747603..2749678) Clostridium botulinum A str. Hall 5400609 YP_001388461.1 CDS cheR NC_009698.1 2749691 2750461 R identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein CheR complement(2749691..2750461) Clostridium botulinum A str. Hall 5400324 YP_001388462.1 CDS cheB NC_009698.1 2750476 2751540 R identified by match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB complement(2750476..2751540) Clostridium botulinum A str. Hall 5398443 YP_001388463.1 CDS cheD NC_009698.1 2751563 2752051 R catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD complement(2751563..2752051) Clostridium botulinum A str. Hall 5398604 YP_001388464.1 CDS cheW NC_009698.1 2752068 2752514 R identified by match to protein family HMM PF01584; chemotaxis protein CheW complement(2752068..2752514) Clostridium botulinum A str. Hall 5399320 YP_001388465.1 CDS CLC_2627 NC_009698.1 2752530 2754563 R identified by match to protein family HMM PF03961; hypothetical protein complement(2752530..2754563) Clostridium botulinum A str. Hall 5400670 YP_001388466.1 CDS CLC_2628 NC_009698.1 2754816 2756771 R identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; PTS system glucose family transporter subunit IIABC complement(2754816..2756771) Clostridium botulinum A str. Hall 5400167 YP_001388467.1 CDS CLC_2629 NC_009698.1 2756854 2757681 R identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator complement(2756854..2757681) Clostridium botulinum A str. Hall 5399167 YP_001388468.1 CDS CLC_2630 NC_009698.1 2757930 2758763 R identified by match to protein family HMM PF01063; branched-chain amino acid aminotransferase complement(2757930..2758763) Clostridium botulinum A str. Hall 5398786 YP_001388469.1 CDS CLC_2631 NC_009698.1 2758890 2759531 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase complement(2758890..2759531) Clostridium botulinum A str. Hall 5399222 YP_001388470.1 CDS CLC_2632 NC_009698.1 2759788 2760189 R hypothetical protein complement(2759788..2760189) Clostridium botulinum A str. Hall 5399535 YP_001388471.1 CDS CLC_2633 NC_009698.1 2760450 2760566 R identified by Glimmer3; hypothetical protein complement(2760450..2760566) Clostridium botulinum A str. Hall 5399317 YP_001388472.1 CDS CLC_2634 NC_009698.1 2760832 2764410 R identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin oxidoreductase complement(2760832..2764410) Clostridium botulinum A str. Hall 5398986 YP_001388473.1 CDS murG NC_009698.1 2765040 2766104 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2765040..2766104) Clostridium botulinum A str. Hall 5400383 YP_001388474.1 CDS CLC_2636 NC_009698.1 2766443 2766592 D identified by Glimmer3; hypothetical protein 2766443..2766592 Clostridium botulinum A str. Hall 5398472 YP_001388475.1 CDS CLC_2637 NC_009698.1 2766706 2768814 R identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase complement(2766706..2768814) Clostridium botulinum A str. Hall 5400000 YP_001388476.1 CDS recJ NC_009698.1 2768937 2770718 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(2768937..2770718) Clostridium botulinum A str. Hall 5398661 YP_001388477.1 CDS CLC_2639 NC_009698.1 2770909 2771727 D identified by match to protein family HMM PF01261; AP endonuclease 2770909..2771727 Clostridium botulinum A str. Hall 5401590 YP_001388478.1 CDS CLC_2640 NC_009698.1 2772017 2773420 R identified by match to protein family HMM PF01436; NHL repeat-containing protein complement(2772017..2773420) Clostridium botulinum A str. Hall 5400293 YP_001388479.1 CDS CLC_2641 NC_009698.1 2774415 2775623 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(2774415..2775623) Clostridium botulinum A str. Hall 5401034 YP_001388480.1 CDS CLC_2642 NC_009698.1 2776012 2776422 D hypothetical protein 2776012..2776422 Clostridium botulinum A str. Hall 5401312 YP_001388481.1 CDS CLC_2643 NC_009698.1 2776490 2777041 D identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 2776490..2777041 Clostridium botulinum A str. Hall 5400947 YP_001388482.1 CDS glpP NC_009698.1 2777444 2778007 R identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein complement(2777444..2778007) Clostridium botulinum A str. Hall 5398522 YP_001388483.1 CDS CLC_2645 NC_009698.1 2778056 2780926 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2778056..2780926) Clostridium botulinum A str. Hall 5398888 YP_001388484.1 CDS CLC_2646 NC_009698.1 2781000 2782955 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(2781000..2782955) Clostridium botulinum A str. Hall 5400977 YP_001388485.1 CDS CLC_2647 NC_009698.1 2783322 2783699 R hypothetical protein complement(2783322..2783699) Clostridium botulinum A str. Hall 5400277 YP_001388486.1 CDS CLC_2648 NC_009698.1 2783886 2785058 D identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 2783886..2785058 Clostridium botulinum A str. Hall 5398253 YP_001388487.1 CDS CLC_2649 NC_009698.1 2785071 2785421 D hypothetical protein 2785071..2785421 Clostridium botulinum A str. Hall 5398609 YP_001388488.1 CDS CLC_2650 NC_009698.1 2785882 2786118 D identified by Glimmer3; hypothetical protein 2785882..2786118 Clostridium botulinum A str. Hall 5401380 YP_001388489.1 CDS CLC_2651 NC_009698.1 2786138 2787031 D identified by match to protein family HMM PF01522; polysaccharide deacetylase 2786138..2787031 Clostridium botulinum A str. Hall 5399442 YP_001388490.1 CDS CLC_2652 NC_009698.1 2787110 2788399 R identified by Glimmer3; hypothetical protein complement(2787110..2788399) Clostridium botulinum A str. Hall 5399627 YP_001388491.1 CDS galE NC_009698.1 2788437 2789417 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase complement(2788437..2789417) Clostridium botulinum A str. Hall 5399651 YP_001388492.1 CDS CLC_2654 NC_009698.1 2789764 2790180 R identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753; flavodoxin complement(2789764..2790180) Clostridium botulinum A str. Hall 5401766 YP_001388493.1 CDS CLC_2655 NC_009698.1 2790464 2790589 R identified by Glimmer3; hypothetical protein complement(2790464..2790589) Clostridium botulinum A str. Hall 5399280 YP_001388494.1 CDS CLC_2656 NC_009698.1 2790568 2791275 R identified by similarity to GB:CAC13569.1; hypothetical protein complement(2790568..2791275) Clostridium botulinum A str. Hall 5399015 YP_001388495.1 CDS CLC_2657 NC_009698.1 2791547 2792968 R identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein complement(2791547..2792968) Clostridium botulinum A str. Hall 5399000 YP_001388496.1 CDS CLC_2658 NC_009698.1 2793592 2795658 R identified by match to protein family HMM PF00165; match to protein family HMM PF07883; AraC family transcriptional regulator complement(2793592..2795658) Clostridium botulinum A str. Hall 5400275 YP_001388497.1 CDS CLC_2659 NC_009698.1 2796057 2797094 D identified by match to protein family HMM PF02016; LD-carboxypeptidase 2796057..2797094 Clostridium botulinum A str. Hall 5400672 YP_001388498.1 CDS glpK NC_009698.1 2797609 2799105 R identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase complement(2797609..2799105) Clostridium botulinum A str. Hall 5401024 YP_001388499.1 CDS CLC_2661 NC_009698.1 2799369 2800073 R identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein complement(2799369..2800073) Clostridium botulinum A str. Hall 5401062 YP_001388500.1 CDS CLC_2662 NC_009698.1 2800607 2800927 D identified by match to protein family HMM PF01906; hypothetical protein 2800607..2800927 Clostridium botulinum A str. Hall 5399516 YP_001388501.1 CDS CLC_2663 NC_009698.1 2801038 2801736 R identified by match to protein family HMM PF04892; VanZ family membrane protein complement(2801038..2801736) Clostridium botulinum A str. Hall 5399988 YP_001388502.1 CDS CLC_2664 NC_009698.1 2801868 2802944 R ABC transporter permease complement(2801868..2802944) Clostridium botulinum A str. Hall 5401382 YP_001388503.1 CDS CLC_2665 NC_009698.1 2802928 2803824 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2802928..2803824) Clostridium botulinum A str. Hall 5399072 YP_001388504.1 CDS CLC_2666 NC_009698.1 2803830 2804210 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2803830..2804210) Clostridium botulinum A str. Hall 5401311 YP_001388505.1 CDS CLC_2667 NC_009698.1 2804384 2804899 R identified by match to protein family HMM PF04892; VanZ family membrane protein complement(2804384..2804899) Clostridium botulinum A str. Hall 5398502 YP_001388506.1 CDS CLC_2668 NC_009698.1 2805332 2807044 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2805332..2807044 Clostridium botulinum A str. Hall 5400549 YP_001388507.1 CDS CLC_2669 NC_009698.1 2807792 2808382 D membrane-spanning protein 2807792..2808382 Clostridium botulinum A str. Hall 5398822 YP_001388508.1 CDS CLC_2670 NC_009698.1 2808686 2809918 D identified by match to protein family HMM PF02073; aminopeptidase 2808686..2809918 Clostridium botulinum A str. Hall 5399996 YP_001388509.1 CDS gerAC NC_009698.1 2810106 2811251 R identified by match to protein family HMM PF05504; spore germination protein complement(2810106..2811251) Clostridium botulinum A str. Hall 5398553 YP_001388510.1 CDS CLC_2672 NC_009698.1 2811205 2812338 R identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein complement(2811205..2812338) Clostridium botulinum A str. Hall 5401112 YP_001388511.1 CDS gerAA NC_009698.1 2812328 2813815 R identified by match to protein family HMM PF03323; spore germination protein complement(2812328..2813815) Clostridium botulinum A str. Hall 5401524 YP_001388512.1 CDS CLC_2674 NC_009698.1 2814075 2814284 R identified by Glimmer3; hypothetical protein complement(2814075..2814284) Clostridium botulinum A str. Hall 5401511 YP_001388513.1 CDS CLC_2675 NC_009698.1 2814509 2814628 R identified by Glimmer3; hypothetical protein complement(2814509..2814628) Clostridium botulinum A str. Hall 5399706 YP_001388514.1 CDS CLC_2676 NC_009698.1 2814630 2815484 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(2814630..2815484) Clostridium botulinum A str. Hall 5399879 YP_001388515.1 CDS CLC_2677 NC_009698.1 2815843 2816574 R identified by match to protein family HMM PF01522; polysaccharide deacetylase complement(2815843..2816574) Clostridium botulinum A str. Hall 5400571 YP_001388516.1 CDS CLC_2678 NC_009698.1 2816794 2818368 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase complement(2816794..2818368) Clostridium botulinum A str. Hall 5398621 YP_001388517.1 CDS CLC_2679 NC_009698.1 2818445 2818612 R hypothetical protein complement(2818445..2818612) Clostridium botulinum A str. Hall 5398647 YP_001388518.1 CDS CLC_2680 NC_009698.1 2819046 2819471 D identified by Glimmer3; hypothetical protein 2819046..2819471 Clostridium botulinum A str. Hall 5400948 YP_001388519.1 CDS CLC_2681 NC_009698.1 2819560 2821254 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2819560..2821254) Clostridium botulinum A str. Hall 5399031 YP_001388520.1 CDS CLC_2682 NC_009698.1 2821451 2821861 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(2821451..2821861) Clostridium botulinum A str. Hall 5399360 YP_001388521.1 CDS CLC_2683 NC_009698.1 2822494 2823135 D identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2822494..2823135 Clostridium botulinum A str. Hall 5401777 YP_001388522.1 CDS CLC_2684 NC_009698.1 2823395 2824312 R catalyzes the formation of glutamate from glutamine; glutaminase complement(2823395..2824312) Clostridium botulinum A str. Hall 5400865 YP_001388523.1 CDS CLC_2685 NC_009698.1 2824703 2825728 R identified by match to protein family HMM PF06725; hypothetical protein complement(2824703..2825728) Clostridium botulinum A str. Hall 5400826 YP_001388524.1 CDS CLC_2686 NC_009698.1 2825995 2826279 R lipoprotein complement(2825995..2826279) Clostridium botulinum A str. Hall 5398683 YP_001388525.1 CDS CLC_2687 NC_009698.1 2826412 2828472 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(2826412..2828472) Clostridium botulinum A str. Hall 5400403 YP_001388526.1 CDS CLC_2688 NC_009698.1 2828989 2829789 R hypothetical protein complement(2828989..2829789) Clostridium botulinum A str. Hall 5400841 YP_001388527.1 CDS nrdB NC_009698.1 2830133 2831161 R identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase subunit beta complement(2830133..2831161) Clostridium botulinum A str. Hall 5399081 YP_001388528.1 CDS CLC_2691 NC_009698.1 2833877 2834353 R hypothetical protein complement(2833877..2834353) Clostridium botulinum A str. Hall 5398313 YP_001388529.1 CDS CLC_2692 NC_009698.1 2835006 2836127 D hypothetical protein 2835006..2836127 Clostridium botulinum A str. Hall 5400363 YP_001388530.1 CDS CLC_2693 NC_009698.1 2836364 2837215 D hypothetical protein 2836364..2837215 Clostridium botulinum A str. Hall 5398974 YP_001388531.1 CDS dinB NC_009698.1 2837375 2838424 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2837375..2838424) Clostridium botulinum A str. Hall 5400116 YP_001388532.1 CDS CLC_2695 NC_009698.1 2838889 2840124 R catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase complement(2838889..2840124) Clostridium botulinum A str. Hall 5399179 YP_001388533.1 CDS CLC_2696 NC_009698.1 2840124 2841440 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(2840124..2841440) Clostridium botulinum A str. Hall 5398754 YP_001388534.1 CDS pyrR-2 NC_009698.1 2841887 2842435 R identified by match to protein family HMM PF00156; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase complement(2841887..2842435) Clostridium botulinum A str. Hall 5399784 YP_001388535.1 CDS CLC_2698 NC_009698.1 2842764 2843819 R identified by match to protein family HMM PF02698; hypothetical protein complement(2842764..2843819) Clostridium botulinum A str. Hall 5401165 YP_001388536.1 CDS CLC_2699 NC_009698.1 2844249 2844668 R identified by match to protein family HMM PF01047; match to protein family HMM PF03965; MarR family transcriptional regulator complement(2844249..2844668) Clostridium botulinum A str. Hall 5401638 YP_001388537.1 CDS CLC_2700 NC_009698.1 2844686 2846944 R identified by match to protein family HMM PF00005; excinuclease ABC subunit A complement(2844686..2846944) Clostridium botulinum A str. Hall 5398765 YP_001388538.1 CDS CLC_2701 NC_009698.1 2847488 2847796 D hypothetical protein 2847488..2847796 Clostridium botulinum A str. Hall 5400853 YP_001388539.1 CDS ligT NC_009698.1 2847907 2848434 R identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase complement(2847907..2848434) Clostridium botulinum A str. Hall 5399048 YP_001388540.1 CDS CLC_2703 NC_009698.1 2848619 2849017 R identified by Glimmer3; hypothetical protein complement(2848619..2849017) Clostridium botulinum A str. Hall 5399453 YP_001388541.1 CDS CLC_2704 NC_009698.1 2849257 2850969 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein complement(2849257..2850969) Clostridium botulinum A str. Hall 5400128 YP_001388542.1 CDS CLC_2706 NC_009698.1 2851681 2852118 R identified by match to protein family HMM PF00293; MutT/nudix family protein complement(2851681..2852118) Clostridium botulinum A str. Hall 5398895 YP_001388543.1 CDS CLC_2707 NC_009698.1 2852658 2853125 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2852658..2853125 Clostridium botulinum A str. Hall 5399439 YP_001388544.1 CDS CLC_2708 NC_009698.1 2853258 2855255 D identified by Glimmer3; hypothetical protein 2853258..2855255 Clostridium botulinum A str. Hall 5400430 YP_001388545.1 CDS CLC_2709 NC_009698.1 2855342 2857561 R identified by match to protein family HMM PF00704; glycosyl hydrolase complement(2855342..2857561) Clostridium botulinum A str. Hall 5398853 YP_001388546.1 CDS nagB NC_009698.1 2857789 2858523 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(2857789..2858523) Clostridium botulinum A str. Hall 5401198 YP_001388547.1 CDS nagA NC_009698.1 2858591 2859727 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase complement(2858591..2859727) Clostridium botulinum A str. Hall 5400307 YP_001388548.1 CDS CLC_2712 NC_009698.1 2859888 2860622 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(2859888..2860622) Clostridium botulinum A str. Hall 5399337 YP_001388549.1 CDS CLC_2713 NC_009698.1 2860917 2861774 D identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator 2860917..2861774 Clostridium botulinum A str. Hall 5399334 YP_001388550.1 CDS ptbA NC_009698.1 2861992 2862471 R identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose subfamily transporter subunit IIA complement(2861992..2862471) Clostridium botulinum A str. Hall 5399702 YP_001388551.1 CDS nagE NC_009698.1 2863218 2864660 D identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 2863218..2864660 Clostridium botulinum A str. Hall 5401284 YP_001388552.1 CDS CLC_2716 NC_009698.1 2865140 2866510 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2865140..2866510 Clostridium botulinum A str. Hall 5400217 YP_001388553.1 CDS CLC_2717 NC_009698.1 2866675 2868069 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797; MATE efflux family protein complement(2866675..2868069) Clostridium botulinum A str. Hall 5400620 YP_001388554.1 CDS CLC_2718 NC_009698.1 2868303 2869502 R identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin complement(2868303..2869502) Clostridium botulinum A str. Hall 5398353 YP_001388555.1 CDS CLC_2719 NC_009698.1 2869561 2871468 R identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2869561..2871468) Clostridium botulinum A str. Hall 5401586 YP_001388556.1 CDS CLC_2720 NC_009698.1 2871824 2872441 R identified by match to protein family HMM PF00665; transposase complement(2871824..2872441) Clostridium botulinum A str. Hall 5401670 YP_001388557.3 CDS CLC_2721 NC_009698.1 2872435 2873346 D identified by match to protein family HMM PF03613; PTS mannose transporter subunit IID 2872435..2873346 Clostridium botulinum A str. Hall 5400890 YP_001388558.1 CDS CLC_2722 NC_009698.1 2873517 2873927 D identified by match to protein family HMM PF06115; hypothetical protein 2873517..2873927 Clostridium botulinum A str. Hall 5401336 YP_001388559.1 CDS CLC_2723 NC_009698.1 2874465 2875181 D identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429; CoA-transferase subunit A 2874465..2875181 Clostridium botulinum A str. Hall 5400444 YP_001388560.1 CDS CLC_2724 NC_009698.1 2875190 2875846 D identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428; CoA-transferase subunit B 2875190..2875846 Clostridium botulinum A str. Hall 5398660 YP_001388561.1 CDS CLC_2725 NC_009698.1 2876428 2876997 R hypothetical protein complement(2876428..2876997) Clostridium botulinum A str. Hall 5400925 YP_001388562.1 CDS CLC_2726 NC_009698.1 2877216 2877704 R identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur binding protein complement(2877216..2877704) Clostridium botulinum A str. Hall 5399818 YP_001388563.1 CDS CLC_2727 NC_009698.1 2877709 2878539 R identified by match to protein family HMM PF00941; xanthine dehydrogenase, FAD-binding subunit complement(2877709..2878539) Clostridium botulinum A str. Hall 5399214 YP_001388564.1 CDS CLC_2728 NC_009698.1 2878536 2880866 R identified by match to protein family HMM PF01315; match to protein family HMM PF02738; xanthine dehydrogenase, molybdopterin-binding subunit complement(2878536..2880866) Clostridium botulinum A str. Hall 5398979 YP_001388566.1 CDS CLC_2730 NC_009698.1 2881928 2883145 R identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein complement(2881928..2883145) Clostridium botulinum A str. Hall 5399926 YP_001388567.1 CDS CLC_2732 NC_009698.1 2884263 2884934 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase complement(2884263..2884934) Clostridium botulinum A str. Hall 5399531 YP_001388568.1 CDS CLC_2733 NC_009698.1 2885354 2885500 R identified by Glimmer3; hypothetical protein complement(2885354..2885500) Clostridium botulinum A str. Hall 5401485 YP_001388569.1 CDS CLC_2734 NC_009698.1 2885829 2886863 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; chloramphenicol/florfenicol resistance protein complement(2885829..2886863) Clostridium botulinum A str. Hall 5401813 YP_001388570.1 CDS CLC_2735 NC_009698.1 2887026 2888504 R identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein complement(2887026..2888504) Clostridium botulinum A str. Hall 5401526 YP_001388571.1 CDS CLC_2736 NC_009698.1 2889531 2892044 R identified by match to protein family HMM PF02463; RecF/RecN/SMC domain-containing protein complement(2889531..2892044) Clostridium botulinum A str. Hall 5400220 YP_001388572.1 CDS CLC_2737 NC_009698.1 2892049 2892576 R identified by similarity to GB:AAS43498.1; hypothetical protein complement(2892049..2892576) Clostridium botulinum A str. Hall 5400911 YP_001388573.1 CDS CLC_2738 NC_009698.1 2892557 2894140 R identified by Glimmer3; hypothetical protein complement(2892557..2894140) Clostridium botulinum A str. Hall 5398420 YP_001388574.1 CDS CLC_2739 NC_009698.1 2895026 2895196 R identified by Glimmer3; hypothetical protein complement(2895026..2895196) Clostridium botulinum A str. Hall 5398533 YP_001388575.1 CDS CLC_2740 NC_009698.1 2895268 2895561 R identified by Glimmer3; hypothetical protein complement(2895268..2895561) Clostridium botulinum A str. Hall 5400130 YP_001388576.1 CDS CLC_2741 NC_009698.1 2895905 2896021 D identified by Glimmer3; hypothetical protein 2895905..2896021 Clostridium botulinum A str. Hall 5401199 YP_001388577.1 CDS CLC_2742 NC_009698.1 2896169 2896315 R identified by Glimmer3; hypothetical protein complement(2896169..2896315) Clostridium botulinum A str. Hall 5400870 YP_001388578.1 CDS CLC_2743 NC_009698.1 2898124 2899677 R identified by Glimmer3; hypothetical protein complement(2898124..2899677) Clostridium botulinum A str. Hall 5399605 YP_001388579.1 CDS CLC_2744 NC_009698.1 2899694 2900746 R identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase complement(2899694..2900746) Clostridium botulinum A str. Hall 5400649 YP_001388580.1 CDS CLC_2745 NC_009698.1 2900766 2900975 R identified by similarity to GB:BAD50088.1; hypothetical protein complement(2900766..2900975) Clostridium botulinum A str. Hall 5400995 YP_001388581.1 CDS CLC_2746 NC_009698.1 2901405 2902115 R identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(2901405..2902115) Clostridium botulinum A str. Hall 5400468 YP_001388582.1 CDS CLC_2747 NC_009698.1 2902258 2902485 R hypothetical protein complement(2902258..2902485) Clostridium botulinum A str. Hall 5399213 YP_001388583.1 CDS CLC_2748 NC_009698.1 2902506 2902727 R hypothetical protein complement(2902506..2902727) Clostridium botulinum A str. Hall 5399948 YP_001388584.1 CDS CLC_2749 NC_009698.1 2902857 2902991 R identified by similarity to GB:BAC57539.1; hypothetical protein complement(2902857..2902991) Clostridium botulinum A str. Hall 5398658 YP_001388585.1 CDS CLC_2750 NC_009698.1 2903093 2903623 R identified by match to protein family HMM TIGR02937; sigma-70 family RNA polymerase sigma factor complement(2903093..2903623) Clostridium botulinum A str. Hall 5399863 YP_001388586.1 CDS CLC_2751 NC_009698.1 2904037 2904543 D identified by Glimmer3; hypothetical protein 2904037..2904543 Clostridium botulinum A str. Hall 5401323 YP_001388587.1 CDS CLC_2752 NC_009698.1 2904748 2905626 R identified by match to protein family HMM TIGR01446; DnaA domain-containing protein complement(2904748..2905626) Clostridium botulinum A str. Hall 5398493 YP_001388588.1 CDS CLC_2753 NC_009698.1 2905703 2905942 R identified by Glimmer3; hypothetical protein complement(2905703..2905942) Clostridium botulinum A str. Hall 5401383 YP_001388589.1 CDS CLC_2754 NC_009698.1 2905949 2906158 R identified by match to protein family HMM TIGR01764; excisionase complement(2905949..2906158) Clostridium botulinum A str. Hall 5400696 YP_001388590.1 CDS CLC_2755 NC_009698.1 2906223 2906444 R identified by similarity to GB:CAJ70012.1; hypothetical protein complement(2906223..2906444) Clostridium botulinum A str. Hall 5398477 YP_001388591.1 CDS CLC_2756 NC_009698.1 2906661 2907212 D identified by match to protein family HMM PF01381; immunity repressor protein 2906661..2907212 Clostridium botulinum A str. Hall 5399699 YP_001388592.1 CDS CLC_2757 NC_009698.1 2907285 2908424 D identified by match to protein family HMM PF00589; phage integrase site specific recombinase 2907285..2908424 Clostridium botulinum A str. Hall 5400180 YP_001388593.1 CDS rumA-1 NC_009698.1 2908509 2909861 R identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(2908509..2909861) Clostridium botulinum A str. Hall 5401643 YP_001388594.1 CDS CLC_2759 NC_009698.1 2910148 2910594 R identified by Glimmer3; hypothetical protein complement(2910148..2910594) Clostridium botulinum A str. Hall 5399668 YP_001388595.1 CDS CLC_2760 NC_009698.1 2910925 2912784 D identified by match to protein family HMM PF00884; sulfatase 2910925..2912784 Clostridium botulinum A str. Hall 5400555 YP_001388596.1 CDS CLC_2761 NC_009698.1 2912810 2913562 D identified by match to protein family HMM PF01925; hypothetical protein 2912810..2913562 Clostridium botulinum A str. Hall 5401768 YP_001388597.1 CDS ribH NC_009698.1 2913972 2914436 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2913972..2914436) Clostridium botulinum A str. Hall 5398584 YP_001388598.1 CDS ribAB NC_009698.1 2914468 2915673 R identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; bifunctional riboflavin biosynthesis protein RibAB complement(2914468..2915673) Clostridium botulinum A str. Hall 5398671 YP_001388599.1 CDS ribE NC_009698.1 2915981 2916667 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2915981..2916667) Clostridium botulinum A str. Hall 5401554 YP_001388600.1 CDS ribD NC_009698.1 2916648 2917745 R identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD complement(2916648..2917745) Clostridium botulinum A str. Hall 5398525 YP_001388601.1 CDS pepD-3 NC_009698.1 2918149 2919585 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase complement(2918149..2919585) Clostridium botulinum A str. Hall 5401814 YP_001388602.1 CDS CLC_2767 NC_009698.1 2919966 2920859 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 2919966..2920859 Clostridium botulinum A str. Hall 5400415 YP_001388603.1 CDS mgtA NC_009698.1 2921097 2923742 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase complement(2921097..2923742) Clostridium botulinum A str. Hall 5398489 YP_001388604.1 CDS CLC_2769 NC_009698.1 2924485 2924889 R hypothetical protein complement(2924485..2924889) Clostridium botulinum A str. Hall 5398585 YP_001388605.1 CDS purD NC_009698.1 2925217 2926458 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2925217..2926458) Clostridium botulinum A str. Hall 5400173 YP_001388606.1 CDS purH NC_009698.1 2926607 2928106 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(2926607..2928106) Clostridium botulinum A str. Hall 5399190 YP_001388607.1 CDS purN NC_009698.1 2928320 2928937 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(2928320..2928937) Clostridium botulinum A str. Hall 5401487 YP_001388608.1 CDS purM NC_009698.1 2929065 2930060 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2929065..2930060) Clostridium botulinum A str. Hall 5400472 YP_001388609.1 CDS purF-1 NC_009698.1 2930121 2931569 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(2930121..2931569) Clostridium botulinum A str. Hall 5399844 YP_001388610.1 CDS purC NC_009698.1 2931661 2932365 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2931661..2932365) Clostridium botulinum A str. Hall 5400712 YP_001388611.1 CDS purE NC_009698.1 2932365 2932844 R identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(2932365..2932844) Clostridium botulinum A str. Hall 5400935 YP_001388612.1 CDS CLC_2777 NC_009698.1 2933365 2933499 D identified by Glimmer3; hypothetical protein 2933365..2933499 Clostridium botulinum A str. Hall 5399149 YP_001388613.1 CDS CLC_2778 NC_009698.1 2933520 2936075 R identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311; xanthine dehydrogenase, molybdopterin-binding subunit complement(2933520..2936075) Clostridium botulinum A str. Hall 5399396 YP_001388614.1 CDS CLC_2779 NC_009698.1 2936450 2937667 R Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase complement(2936450..2937667) Clostridium botulinum A str. Hall 5398233 YP_001388615.1 CDS CLC_2780 NC_009698.1 2937693 2939021 R in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase complement(2937693..2939021) Clostridium botulinum A str. Hall 5398342 YP_001388616.1 CDS CLC_2781 NC_009698.1 2939052 2942069 R with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; selenate reductase subunit YgfK complement(2939052..2942069) Clostridium botulinum A str. Hall 5400862 YP_001388617.1 CDS CLC_2782 NC_009698.1 2942105 2943301 R identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316; aspartate/ornithine carbamoyltransferase complement(2942105..2943301) Clostridium botulinum A str. Hall 5400432 YP_001388618.1 CDS hydA NC_009698.1 2943643 2945037 R catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase complement(2943643..2945037) Clostridium botulinum A str. Hall 5401753 YP_001388619.1 CDS CLC_2784 NC_009698.1 2945087 2946493 R identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine/uracil permease complement(2945087..2946493) Clostridium botulinum A str. Hall 5401171 YP_001388620.1 CDS dpaL NC_009698.1 2946515 2947726 R catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase complement(2946515..2947726) Clostridium botulinum A str. Hall 5399298 YP_001388621.1 CDS CLC_2786 NC_009698.1 2948011 2949774 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator complement(2948011..2949774) Clostridium botulinum A str. Hall 5401634 YP_001388622.1 CDS CLC_2787 NC_009698.1 2950137 2950874 D identified by match to protein family HMM TIGR03172; hypothetical protein 2950137..2950874 Clostridium botulinum A str. Hall 5398915 YP_001388623.1 CDS CLC_2788 NC_009698.1 2950889 2951503 D identified by match to protein family HMM TIGR03310; hypothetical protein 2950889..2951503 Clostridium botulinum A str. Hall 5399253 YP_001388624.1 CDS CLC_2789 NC_009698.1 2951484 2952332 D identified by match to protein family HMM TIGR03309; hypothetical protein 2951484..2952332 Clostridium botulinum A str. Hall 5401085 YP_001388625.1 CDS CLC_2790 NC_009698.1 2952314 2953123 D identified by match to protein family HMM PF02625; xanthine dehydrogenase accessory factor 2952314..2953123 Clostridium botulinum A str. Hall 5400690 YP_001388626.1 CDS CLC_2791 NC_009698.1 2953149 2953694 D hypothetical protein 2953149..2953694 Clostridium botulinum A str. Hall 5398394 YP_001388627.1 CDS CLC_2792 NC_009698.1 2953691 2954659 D identified by match to protein family HMM PF00950; match to protein family HMM PF01032; iron ABC transporter permease 2953691..2954659 Clostridium botulinum A str. Hall 5400877 YP_001388628.1 CDS CLC_2793 NC_009698.1 2954656 2955450 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2954656..2955450 Clostridium botulinum A str. Hall 5401045 YP_001388629.1 CDS CLC_2794 NC_009698.1 2955502 2956560 D identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein 2955502..2956560 Clostridium botulinum A str. Hall 5401159 YP_001388630.1 CDS CLC_2795 NC_009698.1 2956698 2957030 D identified by Glimmer3; hypothetical protein 2956698..2957030 Clostridium botulinum A str. Hall 5399968 YP_001388631.1 CDS CLC_2796 NC_009698.1 2957158 2957730 D identified by match to protein family HMM PF00657; GDSL family lipase/acylhydrolase 2957158..2957730 Clostridium botulinum A str. Hall 5401400 YP_001388632.1 CDS CLC_2797 NC_009698.1 2957844 2958437 R identified by match to protein family HMM PF02698; hypothetical protein complement(2957844..2958437) Clostridium botulinum A str. Hall 5399474 YP_001388633.1 CDS CLC_2798 NC_009698.1 2958768 2960270 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(2958768..2960270) Clostridium botulinum A str. Hall 5398736 YP_001388634.1 CDS CLC_2799 NC_009698.1 2960798 2962150 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein complement(2960798..2962150) Clostridium botulinum A str. Hall 5399656 YP_001388635.1 CDS CLC_2800 NC_009698.1 2963100 2965391 R helicase complement(2963100..2965391) Clostridium botulinum A str. Hall 5401238 YP_001388636.1 CDS mnmA NC_009698.1 2965898 2966959 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2965898..2966959) Clostridium botulinum A str. Hall 5401137 YP_001388638.1 CDS CLC_2803 NC_009698.1 2967526 2969157 R identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase complement(2967526..2969157) Clostridium botulinum A str. Hall 5398991 YP_001388639.1 CDS CLC_2804 NC_009698.1 2969157 2969654 R hypothetical protein complement(2969157..2969654) Clostridium botulinum A str. Hall 5399233 YP_001388640.1 CDS CLC_2805 NC_009698.1 2969972 2971297 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC family protein 2969972..2971297 Clostridium botulinum A str. Hall 5401595 YP_001388641.1 CDS CLC_2806 NC_009698.1 2971650 2971940 R identified by match to protein family HMM PF01910; hypothetical protein complement(2971650..2971940) Clostridium botulinum A str. Hall 5400802 YP_001388642.1 CDS thiC NC_009698.1 2971959 2973272 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2971959..2973272) Clostridium botulinum A str. Hall 5399373 YP_001388643.1 CDS purF-2 NC_009698.1 2973483 2974859 R identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(2973483..2974859) Clostridium botulinum A str. Hall 5398874 YP_001388644.1 CDS CLC_2809 NC_009698.1 2975122 2975403 R identified by match to protein family HMM PF04456; hypothetical protein complement(2975122..2975403) Clostridium botulinum A str. Hall 5398942 YP_001388645.1 CDS CLC_2810 NC_009698.1 2975459 2976148 R hypothetical protein complement(2975459..2976148) Clostridium botulinum A str. Hall 5401560 YP_001388646.1 CDS CLC_2811 NC_009698.1 2976150 2976800 R hypothetical protein complement(2976150..2976800) Clostridium botulinum A str. Hall 5400936 YP_001388647.1 CDS CLC_2812 NC_009698.1 2976807 2977664 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2976807..2977664) Clostridium botulinum A str. Hall 5399123 YP_001388648.1 CDS CLC_2813 NC_009698.1 2977871 2978242 R identified by match to protein family HMM PF00392; GntR family transcriptional regulator complement(2977871..2978242) Clostridium botulinum A str. Hall 5398543 YP_001388649.1 CDS CLC_2814 NC_009698.1 2978880 2979392 D hypothetical protein 2978880..2979392 Clostridium botulinum A str. Hall 5398972 YP_001388650.1 CDS ribB NC_009698.1 2979982 2980623 D identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2979982..2980623 Clostridium botulinum A str. Hall 5399861 YP_001388651.1 CDS CLC_2816 NC_009698.1 2980910 2981653 R identified by match to protein family HMM PF00037; (Fe-S)-binding protein complement(2980910..2981653) Clostridium botulinum A str. Hall 5399075 YP_001388652.1 CDS CLC_2817 NC_009698.1 2981758 2982435 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 2981758..2982435 Clostridium botulinum A str. Hall 5401124 YP_001388653.1 CDS CLC_2818 NC_009698.1 2982524 2982967 D identified by match to protein family HMM PF07486; cell wall hydrolase 2982524..2982967 Clostridium botulinum A str. Hall 5401690 YP_001388654.1 CDS CLC_2819 NC_009698.1 2982990 2983547 D identified by Glimmer3; hypothetical protein 2982990..2983547 Clostridium botulinum A str. Hall 5401715 YP_001388655.1 CDS CLC_2820 NC_009698.1 2983810 2984154 R identified by match to protein family HMM PF07883; hypothetical protein complement(2983810..2984154) Clostridium botulinum A str. Hall 5399819 YP_001388656.1 CDS CLC_2821 NC_009698.1 2984271 2986433 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein complement(2984271..2986433) Clostridium botulinum A str. Hall 5399216 YP_001388657.1 CDS CLC_2822 NC_009698.1 2986741 2987493 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase complement(2986741..2987493) Clostridium botulinum A str. Hall 5400080 YP_001388658.1 CDS CLC_2823 NC_009698.1 2987872 2988834 R hypothetical protein complement(2987872..2988834) Clostridium botulinum A str. Hall 5401416 YP_001388659.1 CDS CLC_2824 NC_009698.1 2989295 2990548 D identified by match to protein family HMM PF00282; decarboxylase 2989295..2990548 Clostridium botulinum A str. Hall 5399044 YP_001388661.1 CDS CLC_2827 NC_009698.1 2991237 2991770 R identified by Glimmer3; hypothetical protein complement(2991237..2991770) Clostridium botulinum A str. Hall 5398446 YP_001388663.1 CDS CLC_2829 NC_009698.1 2992617 2993351 R identified by match to protein family HMM PF02591; hypothetical protein complement(2992617..2993351) Clostridium botulinum A str. Hall 5400893 YP_001388664.1 CDS CLC_2830 NC_009698.1 2993490 2994293 R identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein complement(2993490..2994293) Clostridium botulinum A str. Hall 5399421 YP_001388665.1 CDS CLC_2831 NC_009698.1 2994284 2994973 R identified by match to protein family HMM PF04816; hypothetical protein complement(2994284..2994973) Clostridium botulinum A str. Hall 5401503 YP_001388666.1 CDS CLC_2832 NC_009698.1 2995049 2995936 R hypothetical protein complement(2995049..2995936) Clostridium botulinum A str. Hall 5400728 YP_001388667.1 CDS rpoD NC_009698.1 2996010 2997095 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(2996010..2997095) Clostridium botulinum A str. Hall 5401097 YP_001388668.1 CDS dnaG NC_009698.1 2997120 2998892 R synthesizes RNA primers at the replication forks; DNA primase complement(2997120..2998892) Clostridium botulinum A str. Hall 5400380 YP_001388669.1 CDS CLC_2835 NC_009698.1 2999176 3000204 R dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2999176..3000204) Clostridium botulinum A str. Hall 5401570 YP_001388670.1 CDS CLC_2836 NC_009698.1 3000346 3001416 D identified by match to protein family HMM TIGR02906; spore coat protein-like protein 3000346..3001416 Clostridium botulinum A str. Hall 5398509 YP_001388671.1 CDS ppdK NC_009698.1 3001469 3004102 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(3001469..3004102) Clostridium botulinum A str. Hall 5400562 YP_001388672.1 CDS CLC_2838 NC_009698.1 3004182 3004823 R identified by match to protein family HMM PF00571; match to protein family HMM PF08279; hypothetical protein complement(3004182..3004823) Clostridium botulinum A str. Hall 5399586 YP_001388673.1 CDS CLC_2839 NC_009698.1 3005333 3005953 R identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein complement(3005333..3005953) Clostridium botulinum A str. Hall 5398245 YP_008472698.1 CDS CLC_2840 NC_009698.1 3005956 3006336 R DNA repair protein RecD complement(3005956..3006336) Clostridium botulinum A str. Hall 5401005 YP_001388674.1 CDS era NC_009698.1 3006732 3007622 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(3006732..3007622) Clostridium botulinum A str. Hall 5401791 YP_001388675.1 CDS cdd NC_009698.1 3007638 3008036 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(3007638..3008036) Clostridium botulinum A str. Hall 5399208 YP_001388676.1 CDS CLC_2843 NC_009698.1 3008120 3008818 R identified by match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase/PAP2 family protein complement(3008120..3008818) Clostridium botulinum A str. Hall 5401389 YP_001388677.1 CDS CLC_2844 NC_009698.1 3008857 3009357 R identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease complement(3008857..3009357) Clostridium botulinum A str. Hall 5400937 YP_001388678.1 CDS CLC_2845 NC_009698.1 3009354 3011441 R identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; hydrolase complement(3009354..3011441) Clostridium botulinum A str. Hall 5400979 YP_001388679.1 CDS CLC_2846 NC_009698.1 3011464 3012624 R identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876; stage IV sporulation protein complement(3011464..3012624) Clostridium botulinum A str. Hall 5398927 YP_001388680.1 CDS yqfC NC_009698.1 3012614 3012910 R identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856; sporulation protein YqfC complement(3012614..3012910) Clostridium botulinum A str. Hall 5401252 YP_001388681.1 CDS CLC_2848 NC_009698.1 3013024 3013470 R identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein complement(3013024..3013470) Clostridium botulinum A str. Hall 5398769 YP_001388682.1 CDS rpsU NC_009698.1 3013513 3013689 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(3013513..3013689) Clostridium botulinum A str. Hall 5399734 YP_001388683.1 CDS CLC_2850 NC_009698.1 3013826 3014170 R identified by match to protein family HMM PF01230; HIT family protein complement(3013826..3014170) Clostridium botulinum A str. Hall 5399788 YP_001388684.1 CDS CLC_2851 NC_009698.1 3014227 3015525 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; RNA modification protein complement(3014227..3015525) Clostridium botulinum A str. Hall 5400072 YP_001388685.1 CDS CLC_2852 NC_009698.1 3015525 3016283 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(3015525..3016283) Clostridium botulinum A str. Hall 5398559 YP_001388686.1 CDS prmA NC_009698.1 3016381 3017319 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(3016381..3017319) Clostridium botulinum A str. Hall 5399843 YP_001388687.1 CDS dnaJ NC_009698.1 3017497 3018642 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(3017497..3018642) Clostridium botulinum A str. Hall 5398302 YP_001388688.1 CDS dnaK NC_009698.1 3018785 3020656 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(3018785..3020656) Clostridium botulinum A str. Hall 5400902 YP_001388689.1 CDS grpE NC_009698.1 3020711 3021355 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(3020711..3021355) Clostridium botulinum A str. Hall 5399329 YP_001388690.1 CDS hrcA NC_009698.1 3021382 3022413 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(3021382..3022413) Clostridium botulinum A str. Hall 5400493 YP_001388691.1 CDS CLC_2858 NC_009698.1 3022614 3023756 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3022614..3023756) Clostridium botulinum A str. Hall 5399016 YP_001388692.1 CDS lepA NC_009698.1 3023783 3025591 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(3023783..3025591) Clostridium botulinum A str. Hall 5400396 YP_001388693.1 CDS CLC_2860 NC_009698.1 3025732 3026127 R hypothetical protein complement(3025732..3026127) Clostridium botulinum A str. Hall 5401276 YP_001388694.1 CDS CLC_2861 NC_009698.1 3026198 3027289 R identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867; stage II sporulation protein complement(3026198..3027289) Clostridium botulinum A str. Hall 5401769 YP_001388695.1 CDS gpr NC_009698.1 3027474 3028448 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(3027474..3028448) Clostridium botulinum A str. Hall 5401548 YP_001388696.1 CDS rpsT NC_009698.1 3028658 3028924 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3028658..3028924 Clostridium botulinum A str. Hall 5398796 YP_001388697.1 CDS holA NC_009698.1 3028959 3029990 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(3028959..3029990) Clostridium botulinum A str. Hall 5398331 YP_001388698.1 CDS CLC_2865 NC_009698.1 3030019 3031806 R identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein complement(3030019..3031806) Clostridium botulinum A str. Hall 5400443 YP_001388699.1 CDS CLC_2866 NC_009698.1 3031818 3032048 R hypothetical protein complement(3031818..3032048) Clostridium botulinum A str. Hall 5399103 YP_001388700.1 CDS CLC_2867 NC_009698.1 3032153 3034747 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; cation transporting ATPase complement(3032153..3034747) Clostridium botulinum A str. Hall 5400553 YP_008472699.1 CDS CLC_2868 NC_009698.1 3035256 3036770 R membrane protein complement(3035256..3036770) Clostridium botulinum A str. Hall 5400675 YP_001388703.1 CDS selB NC_009698.1 3038491 3040398 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor complement(3038491..3040398) Clostridium botulinum A str. Hall 5400744 YP_001388704.1 CDS selA NC_009698.1 3040417 3041805 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(3040417..3041805) Clostridium botulinum A str. Hall 5400931 YP_001388705.1 CDS selD NC_009698.1 3041872 3042951 R Selenoprotein. identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase complement(3041872..3042951) Clostridium botulinum A str. Hall 5401392 YP_001388706.1 CDS CLC_2875 NC_009698.1 3043057 3043665 R identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; comE operon protein 1 complement(3043057..3043665) Clostridium botulinum A str. Hall 5401664 YP_001388707.1 CDS CLC_2876 NC_009698.1 3043854 3045101 D identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 3043854..3045101 Clostridium botulinum A str. Hall 5400990 YP_001388708.1 CDS CLC_2877 NC_009698.1 3045209 3046111 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(3045209..3046111) Clostridium botulinum A str. Hall 5400929 YP_001388709.1 CDS CLC_2878 NC_009698.1 3046437 3046817 R identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP complement(3046437..3046817) Clostridium botulinum A str. Hall 5400387 YP_001388710.1 CDS CLC_2879 NC_009698.1 3046833 3048107 R identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator complement(3046833..3048107) Clostridium botulinum A str. Hall 5399217 YP_001388711.1 CDS CLC_2880 NC_009698.1 3048118 3048687 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; HDIG domain-containing protein complement(3048118..3048687) Clostridium botulinum A str. Hall 5401671 YP_001388712.1 CDS nadD NC_009698.1 3048770 3049375 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(3048770..3049375) Clostridium botulinum A str. Hall 5398689 YP_001388713.1 CDS CLC_2882 NC_009698.1 3049618 3049911 R identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; RNA-binding protein complement(3049618..3049911) Clostridium botulinum A str. Hall 5400713 YP_001388714.1 CDS obgE NC_009698.1 3049938 3051212 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3049938..3051212) Clostridium botulinum A str. Hall 5400071 YP_001388715.1 CDS rpmA NC_009698.1 3051591 3051893 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3051591..3051893) Clostridium botulinum A str. Hall 5399385 YP_001388716.1 CDS CLC_2885 NC_009698.1 3051896 3052222 R identified by match to protein family HMM PF04327; hypothetical protein complement(3051896..3052222) Clostridium botulinum A str. Hall 5399669 YP_001388717.1 CDS rplU NC_009698.1 3052225 3052539 R identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(3052225..3052539) Clostridium botulinum A str. Hall 5400924 YP_001388718.1 CDS CLC_2887 NC_009698.1 3052663 3054102 R identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease complement(3052663..3054102) Clostridium botulinum A str. Hall 5401131 YP_001388719.1 CDS CLC_2888 NC_009698.1 3054260 3054973 R hypothetical protein complement(3054260..3054973) Clostridium botulinum A str. Hall 5400664 YP_001388720.1 CDS CLC_2889 NC_009698.1 3054951 3056801 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3054951..3056801) Clostridium botulinum A str. Hall 5401301 YP_001388721.1 CDS CLC_2890 NC_009698.1 3056914 3057765 R identified by match to protein family HMM PF02163; metalloprotease complement(3056914..3057765) Clostridium botulinum A str. Hall 5400051 YP_001388722.1 CDS CLC_2891 NC_009698.1 3057820 3058605 R identified by match to protein family HMM PF01551; M24/M37 family peptidase complement(3057820..3058605) Clostridium botulinum A str. Hall 5398448 YP_001388723.1 CDS rodA-2 NC_009698.1 3058925 3060043 R identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA complement(3058925..3060043) Clostridium botulinum A str. Hall 5398362 YP_001388724.1 CDS minE NC_009698.1 3060142 3060405 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(3060142..3060405) Clostridium botulinum A str. Hall 5398740 YP_001388725.1 CDS minD NC_009698.1 3060419 3061216 R identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD complement(3060419..3061216) Clostridium botulinum A str. Hall 5398592 YP_001388726.1 CDS minC NC_009698.1 3061234 3061863 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(3061234..3061863) Clostridium botulinum A str. Hall 5398842 YP_001388727.1 CDS CLC_2896 NC_009698.1 3062038 3064812 R identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein complement(3062038..3064812) Clostridium botulinum A str. Hall 5401742 YP_001388728.1 CDS mreD NC_009698.1 3064832 3065323 R identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426; rod shape-determining protein MreD complement(3064832..3065323) Clostridium botulinum A str. Hall 5398386 YP_001388729.1 CDS mreC NC_009698.1 3065334 3066179 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(3065334..3066179) Clostridium botulinum A str. Hall 5400917 YP_001388730.1 CDS CLC_2899 NC_009698.1 3066186 3067196 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3066186..3067196) Clostridium botulinum A str. Hall 5400157 YP_001388731.1 CDS radC NC_009698.1 3067225 3067911 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3067225..3067911) Clostridium botulinum A str. Hall 5399131 YP_001388732.1 CDS maf NC_009698.1 3067926 3068510 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(3067926..3068510) Clostridium botulinum A str. Hall 5398866 YP_001388733.1 CDS CLC_2902 NC_009698.1 3068526 3068783 R hypothetical protein complement(3068526..3068783) Clostridium botulinum A str. Hall 5399620 YP_001388734.1 CDS CLC_2903 NC_009698.1 3068893 3069594 R hypothetical protein complement(3068893..3069594) Clostridium botulinum A str. Hall 5399240 YP_001388735.1 CDS CLC_2904 NC_009698.1 3069820 3070359 R hypothetical protein complement(3069820..3070359) Clostridium botulinum A str. Hall 5398622 YP_001388736.1 CDS CLC_2905 NC_009698.1 3070785 3071339 D identified by match to protein family HMM PF02567; hypothetical protein 3070785..3071339 Clostridium botulinum A str. Hall 5398627 YP_001388737.1 CDS pheB NC_009698.1 3071398 3071835 R identified by match to protein family HMM PF01842; hypothetical protein complement(3071398..3071835) Clostridium botulinum A str. Hall 5399116 YP_001388738.1 CDS CLC_2907 NC_009698.1 3071892 3072026 R identified by Glimmer3; hypothetical protein complement(3071892..3072026) Clostridium botulinum A str. Hall 5398859 YP_001388739.1 CDS CLC_2909 NC_009698.1 3072570 3073094 R identified by match to protein family HMM PF01464; transglycosylase complement(3072570..3073094) Clostridium botulinum A str. Hall 5400449 YP_001388740.1 CDS coaE NC_009698.1 3073133 3073771 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(3073133..3073771) Clostridium botulinum A str. Hall 5401794 YP_001388741.1 CDS polA NC_009698.1 3073783 3076410 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(3073783..3076410) Clostridium botulinum A str. Hall 5399735 YP_001388742.1 CDS aroC NC_009698.1 3076428 3077552 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(3076428..3077552) Clostridium botulinum A str. Hall 5399612 YP_001388743.1 CDS CLC_2913 NC_009698.1 3077694 3078464 R identified by match to protein family HMM PF01520; match to protein family HMM PF08239; N-acetylmuramoyl-L-alanine amidase complement(3077694..3078464) Clostridium botulinum A str. Hall 5401168 YP_001388744.1 CDS CLC_2914 NC_009698.1 3078611 3078805 R hypothetical protein complement(3078611..3078805) Clostridium botulinum A str. Hall 5401515 YP_001388745.1 CDS CLC_2915 NC_009698.1 3078824 3079078 R hypothetical protein complement(3078824..3079078) Clostridium botulinum A str. Hall 5399949 YP_001388746.1 CDS CLC_2916 NC_009698.1 3079234 3080148 R hypothetical protein complement(3079234..3080148) Clostridium botulinum A str. Hall 5401200 YP_001388747.1 CDS CLC_2917 NC_009698.1 3080222 3081220 R hypothetical protein complement(3080222..3081220) Clostridium botulinum A str. Hall 5400278 YP_001388748.1 CDS CLC_2918 NC_009698.1 3081317 3082657 R identified by Glimmer3; hypothetical protein complement(3081317..3082657) Clostridium botulinum A str. Hall 5400040 YP_001388749.1 CDS CLC_2919 NC_009698.1 3082671 3084428 R identified by Glimmer3; hypothetical protein complement(3082671..3084428) Clostridium botulinum A str. Hall 5400426 YP_001388750.1 CDS CLC_2920 NC_009698.1 3084526 3085611 R hypothetical protein complement(3084526..3085611) Clostridium botulinum A str. Hall 5398250 YP_001388751.1 CDS CLC_2921 NC_009698.1 3085623 3086621 R hypothetical protein complement(3085623..3086621) Clostridium botulinum A str. Hall 5401221 YP_001388752.1 CDS CLC_2922 NC_009698.1 3086633 3086887 R identified by Glimmer3; hypothetical protein complement(3086633..3086887) Clostridium botulinum A str. Hall 5398439 YP_001388753.1 CDS CLC_2923 NC_009698.1 3086893 3088788 R hypothetical protein complement(3086893..3088788) Clostridium botulinum A str. Hall 5400652 YP_001388754.1 CDS CLC_2924 NC_009698.1 3088803 3090041 R hypothetical protein complement(3088803..3090041) Clostridium botulinum A str. Hall 5401349 YP_001388755.1 CDS CLC_2925 NC_009698.1 3090064 3091044 R hypothetical protein complement(3090064..3091044) Clostridium botulinum A str. Hall 5400333 YP_001388756.1 CDS CLC_2926 NC_009698.1 3091046 3092386 R identified by match to protein family HMM PF00656; hypothetical protein complement(3091046..3092386) Clostridium botulinum A str. Hall 5398610 YP_001388757.1 CDS CLC_2927 NC_009698.1 3092401 3092742 R hypothetical protein complement(3092401..3092742) Clostridium botulinum A str. Hall 5401277 YP_001388758.1 CDS CLC_2928 NC_009698.1 3092755 3093840 R hypothetical protein complement(3092755..3093840) Clostridium botulinum A str. Hall 5399449 YP_001388759.1 CDS CLC_2929 NC_009698.1 3093827 3094261 R identified by Glimmer3; hypothetical protein complement(3093827..3094261) Clostridium botulinum A str. Hall 5401645 YP_001388760.1 CDS CLC_2930 NC_009698.1 3094274 3095815 R identified by Glimmer3; hypothetical protein complement(3094274..3095815) Clostridium botulinum A str. Hall 5401375 YP_001388761.1 CDS CLC_2931 NC_009698.1 3095891 3096058 R identified by Glimmer3; hypothetical protein complement(3095891..3096058) Clostridium botulinum A str. Hall 5398709 YP_001388762.1 CDS CLC_2932 NC_009698.1 3096093 3096509 R hypothetical protein complement(3096093..3096509) Clostridium botulinum A str. Hall 5401516 YP_001388763.1 CDS CLC_2933 NC_009698.1 3096525 3097412 R hypothetical protein complement(3096525..3097412) Clostridium botulinum A str. Hall 5400626 YP_001388764.1 CDS CLC_2934 NC_009698.1 3097417 3097836 R hypothetical protein complement(3097417..3097836) Clostridium botulinum A str. Hall 5401356 YP_001388765.1 CDS CLC_2935 NC_009698.1 3097842 3098189 R hypothetical protein complement(3097842..3098189) Clostridium botulinum A str. Hall 5401190 YP_001388766.1 CDS CLC_2936 NC_009698.1 3098194 3098559 R hypothetical protein complement(3098194..3098559) Clostridium botulinum A str. Hall 5399520 YP_001388767.1 CDS CLC_2937 NC_009698.1 3098559 3098843 R identified by Glimmer3; hypothetical protein complement(3098559..3098843) Clostridium botulinum A str. Hall 5400329 YP_001388768.1 CDS CLC_2938 NC_009698.1 3099530 3100051 R hypothetical protein complement(3099530..3100051) Clostridium botulinum A str. Hall 5399573 YP_001388769.1 CDS CLC_2939 NC_009698.1 3100224 3100475 R hypothetical protein complement(3100224..3100475) Clostridium botulinum A str. Hall 5400412 YP_001388770.1 CDS CLC_2940 NC_009698.1 3100532 3101332 R hypothetical protein complement(3100532..3101332) Clostridium botulinum A str. Hall 5399654 YP_001388771.1 CDS CLC_2942 NC_009698.1 3102320 3102532 R DNA-binding protein complement(3102320..3102532) Clostridium botulinum A str. Hall 5399461 YP_001388772.1 CDS CLC_2943 NC_009698.1 3102594 3102803 R identified by match to protein family HMM PF01381; DNA-binding protein complement(3102594..3102803) Clostridium botulinum A str. Hall 5399765 YP_001388773.1 CDS CLC_2944 NC_009698.1 3102995 3103405 D identified by match to protein family HMM PF01381; DNA-binding protein 3102995..3103405 Clostridium botulinum A str. Hall 5399728 YP_001388774.1 CDS CLC_2945 NC_009698.1 3103707 3103856 D identified by Glimmer3; hypothetical protein 3103707..3103856 Clostridium botulinum A str. Hall 5398730 YP_001388775.1 CDS CLC_2948 NC_009698.1 3104937 3106424 D identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI 3104937..3106424 Clostridium botulinum A str. Hall 5400112 YP_001388776.1 CDS CLC_2949 NC_009698.1 3106437 3107888 D identified by Glimmer3; hypothetical protein 3106437..3107888 Clostridium botulinum A str. Hall 5400450 YP_001388777.1 CDS CLC_2950 NC_009698.1 3108060 3108263 R identified by match to protein family HMM PF00269; small, acid-soluble spore protein complement(3108060..3108263) Clostridium botulinum A str. Hall 5398844 YP_001388778.1 CDS CLC_2951 NC_009698.1 3108448 3108588 R identified by Glimmer3; hypothetical protein complement(3108448..3108588) Clostridium botulinum A str. Hall 5399930 YP_001388779.1 CDS CLC_2952 NC_009698.1 3108827 3108946 R identified by Glimmer3; hypothetical protein complement(3108827..3108946) Clostridium botulinum A str. Hall 5400451 YP_001388780.1 CDS CLC_2953 NC_009698.1 3109003 3109293 R identified by Glimmer3; hypothetical protein complement(3109003..3109293) Clostridium botulinum A str. Hall 5398467 YP_001388781.1 CDS CLC_2954 NC_009698.1 3109434 3109562 R identified by Glimmer3; hypothetical protein complement(3109434..3109562) Clostridium botulinum A str. Hall 5399440 YP_001388782.1 CDS CLC_2955 NC_009698.1 3109734 3110162 D identified by match to protein family HMM PF04246; sigma-E factor regulator 3109734..3110162 Clostridium botulinum A str. Hall 5398772 YP_001388783.1 CDS aspS NC_009698.1 3110197 3111978 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(3110197..3111978) Clostridium botulinum A str. Hall 5398941 YP_001388784.1 CDS hisS NC_009698.1 3112019 3113266 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(3112019..3113266) Clostridium botulinum A str. Hall 5401734 YP_001388785.1 CDS CLC_2958 NC_009698.1 3113285 3114715 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(3113285..3114715) Clostridium botulinum A str. Hall 5398679 YP_001388786.1 CDS CLC_2959 NC_009698.1 3114753 3115352 R identified by match to protein family HMM PF00753; metallo-beta-lactamase complement(3114753..3115352) Clostridium botulinum A str. Hall 5399227 YP_001388787.1 CDS dtd NC_009698.1 3115413 3115862 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(3115413..3115862) Clostridium botulinum A str. Hall 5401718 YP_001388788.1 CDS relA NC_009698.1 3115905 3118076 R identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase complement(3115905..3118076) Clostridium botulinum A str. Hall 5399715 YP_001388789.1 CDS apt NC_009698.1 3118200 3118718 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(3118200..3118718) Clostridium botulinum A str. Hall 5400310 YP_001388790.1 CDS CLC_2963 NC_009698.1 3118827 3119705 R identified by match to protein family HMM PF01368; DHH domain-containing protein complement(3118827..3119705) Clostridium botulinum A str. Hall 5399511 YP_001388791.1 CDS secF NC_009698.1 3119934 3120797 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(3119934..3120797) Clostridium botulinum A str. Hall 5398519 YP_001388792.1 CDS secD NC_009698.1 3120799 3122067 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(3120799..3122067) Clostridium botulinum A str. Hall 5401481 YP_001388793.1 CDS CLC_2966 NC_009698.1 3122161 3123528 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(3122161..3123528) Clostridium botulinum A str. Hall 5398965 YP_001388794.1 CDS CLC_2967 NC_009698.1 3123685 3123822 R identified by Glimmer3; hypothetical protein complement(3123685..3123822) Clostridium botulinum A str. Hall 5398688 YP_001388795.1 CDS CLC_2968 NC_009698.1 3123912 3124280 R hypothetical protein complement(3123912..3124280) Clostridium botulinum A str. Hall 5401009 YP_001388796.1 CDS yajC NC_009698.1 3124335 3124670 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(3124335..3124670) Clostridium botulinum A str. Hall 5400414 YP_001388797.1 CDS tgt NC_009698.1 3124850 3125980 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(3124850..3125980) Clostridium botulinum A str. Hall 5399549 YP_001388798.1 CDS queA NC_009698.1 3126036 3127061 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(3126036..3127061) Clostridium botulinum A str. Hall 5400586 YP_001388799.1 CDS ruvB NC_009698.1 3127095 3128123 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3127095..3128123) Clostridium botulinum A str. Hall 5398375 YP_001388800.1 CDS ruvA NC_009698.1 3128143 3128736 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(3128143..3128736) Clostridium botulinum A str. Hall 5401784 YP_001388801.1 CDS CLC_2974 NC_009698.1 3128918 3129529 R hypothetical protein complement(3128918..3129529) Clostridium botulinum A str. Hall 5399245 YP_001388802.1 CDS CLC_2975 NC_009698.1 3129906 3130646 R identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein complement(3129906..3130646) Clostridium botulinum A str. Hall 5401081 YP_001388803.1 CDS CLC_2976 NC_009698.1 3130797 3131447 R identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein complement(3130797..3131447) Clostridium botulinum A str. Hall 5398720 YP_001388804.1 CDS CLC_2977 NC_009698.1 3131463 3132125 R identified by match to protein family HMM PF03130; PBS lyase complement(3131463..3132125) Clostridium botulinum A str. Hall 5398268 YP_001388805.1 CDS CLC_2978 NC_009698.1 3132213 3133631 R identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator complement(3132213..3133631) Clostridium botulinum A str. Hall 5400291 YP_001388806.1 CDS CLC_2979 NC_009698.1 3133917 3134810 R identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein complement(3133917..3134810) Clostridium botulinum A str. Hall 5398648 YP_001388807.1 CDS CLC_2980 NC_009698.1 3134960 3135181 R hypothetical protein complement(3134960..3135181) Clostridium botulinum A str. Hall 5398384 YP_001388808.1 CDS CLC_2981 NC_009698.1 3135354 3135512 R identified by match to protein family HMM PF00301; rubredoxin complement(3135354..3135512) Clostridium botulinum A str. Hall 5400603 YP_001388809.1 CDS CLC_2982 NC_009698.1 3135641 3137425 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding protein complement(3135641..3137425) Clostridium botulinum A str. Hall 5398421 YP_001388810.1 CDS hpt-1 NC_009698.1 3137567 3138091 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 3137567..3138091 Clostridium botulinum A str. Hall 5400341 YP_001388811.1 CDS CLC_2984 NC_009698.1 3138128 3138682 R identified by match to protein family HMM TIGR02832; hypothetical protein complement(3138128..3138682) Clostridium botulinum A str. Hall 5400221 YP_001388812.1 CDS CLC_2985 NC_009698.1 3138954 3141446 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 3138954..3141446 Clostridium botulinum A str. Hall 5401037 YP_001388813.1 CDS CLC_2986 NC_009698.1 3141476 3141832 R identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839; SpoVA family protein complement(3141476..3141832) Clostridium botulinum A str. Hall 5399496 YP_001388814.1 CDS CLC_2987 NC_009698.1 3141848 3142855 R identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845; stage V sporulation protein AD complement(3141848..3142855) Clostridium botulinum A str. Hall 5399944 YP_001388815.1 CDS CLC_2988 NC_009698.1 3142878 3143333 R identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838; SpoVA family protein complement(3142878..3143333) Clostridium botulinum A str. Hall 5398344 YP_001388816.1 CDS sigF NC_009698.1 3143535 3144290 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF complement(3143535..3144290) Clostridium botulinum A str. Hall 5398373 YP_001388817.1 CDS spoIIAB NC_009698.1 3144309 3144731 R binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor complement(3144309..3144731) Clostridium botulinum A str. Hall 5398298 YP_001388818.1 CDS spoIIAA NC_009698.1 3144748 3145083 R identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886; anti-sigma F factor antagonist complement(3144748..3145083) Clostridium botulinum A str. Hall 5399717 YP_001388819.1 CDS CLC_2992 NC_009698.1 3145384 3147117 R modification methylase complement(3145384..3147117) Clostridium botulinum A str. Hall 5401169 YP_001388820.1 CDS CLC_2993 NC_009698.1 3147184 3148158 D identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884; polysaccharide deacetylase 3147184..3148158 Clostridium botulinum A str. Hall 5401351 YP_001388821.1 CDS CLC_2994 NC_009698.1 3148247 3148963 R identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase complement(3148247..3148963) Clostridium botulinum A str. Hall 5401781 YP_001388822.1 CDS CLC_2995 NC_009698.1 3149291 3149944 R identified by match to protein family HMM PF02397; sugar transferase complement(3149291..3149944) Clostridium botulinum A str. Hall 5399885 YP_001388823.1 CDS CLC_2996 NC_009698.1 3149965 3151389 R identified by match to protein family HMM PF01943; polysaccharide transporter complement(3149965..3151389) Clostridium botulinum A str. Hall 5398240 YP_001388824.1 CDS mviN NC_009698.1 3151787 3153343 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(3151787..3153343) Clostridium botulinum A str. Hall 5399246 YP_001388825.1 CDS CLC_2998 NC_009698.1 3153362 3154465 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(3153362..3154465) Clostridium botulinum A str. Hall 5398910 YP_001388826.1 CDS CLC_2999 NC_009698.1 3154575 3155702 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(3154575..3155702) Clostridium botulinum A str. Hall 5401029 YP_001388827.1 CDS CLC_3000 NC_009698.1 3155817 3157049 R identified by match to protein family HMM PF04932; exopolysaccharide biosynthesis family protein complement(3155817..3157049) Clostridium botulinum A str. Hall 5399380 YP_001388828.1 CDS CLC_3001 NC_009698.1 3157127 3158353 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(3157127..3158353) Clostridium botulinum A str. Hall 5399002 YP_001388829.1 CDS CLC_3002 NC_009698.1 3158372 3159430 R identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase complement(3158372..3159430) Clostridium botulinum A str. Hall 5401451 YP_001388830.1 CDS CLC_3003 NC_009698.1 3159430 3160524 R identified by match to protein family HMM PF00534; glycoside hydrolase family protein complement(3159430..3160524) Clostridium botulinum A str. Hall 5399152 YP_001388831.1 CDS CLC_3004 NC_009698.1 3160547 3161650 R identified by Glimmer3; hypothetical protein complement(3160547..3161650) Clostridium botulinum A str. Hall 5400011 YP_001388832.1 CDS CLC_3005 NC_009698.1 3161640 3163058 R hypothetical protein complement(3161640..3163058) Clostridium botulinum A str. Hall 5400169 YP_001388833.1 CDS CLC_3006 NC_009698.1 3163073 3164167 R identified by match to protein family HMM PF00560; internalin complement(3163073..3164167) Clostridium botulinum A str. Hall 5398270 YP_001388834.1 CDS CLC_3007 NC_009698.1 3164204 3165511 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; polysaccharide biosynthesis protein complement(3164204..3165511) Clostridium botulinum A str. Hall 5399489 YP_001388835.1 CDS CLC_3008 NC_009698.1 3165542 3166288 R identified by match to protein family HMM PF00132; acetyltransferase complement(3165542..3166288) Clostridium botulinum A str. Hall 5400921 YP_001388836.1 CDS CLC_3009 NC_009698.1 3166388 3167497 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding Rossmann fold family oxidoreductase complement(3166388..3167497) Clostridium botulinum A str. Hall 5400336 YP_001388837.1 CDS CLC_3010 NC_009698.1 3167560 3168876 R identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose/GDP-mannose dehydrogenase complement(3167560..3168876) Clostridium botulinum A str. Hall 5398973 YP_001388838.1 CDS CLC_3011 NC_009698.1 3169006 3170871 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; exopolysaccharide biosynthesis protein complement(3169006..3170871) Clostridium botulinum A str. Hall 5399771 YP_001388839.1 CDS CLC_3012 NC_009698.1 3171052 3173943 R identified by match to protein family HMM PF01520; match to protein family HMM PF07495; N-acetylmuramoyl-L-alanine amidase complement(3171052..3173943) Clostridium botulinum A str. Hall 5401537 YP_001388840.1 CDS CLC_3013 NC_009698.1 3174138 3177041 R identified by match to protein family HMM PF01520; match to protein family HMM PF07495; N-acetylmuramoyl-L-alanine amidase complement(3174138..3177041) Clostridium botulinum A str. Hall 5398457 YP_001388841.1 CDS CLC_3014 NC_009698.1 3177110 3177244 R identified by Glimmer3; hypothetical protein complement(3177110..3177244) Clostridium botulinum A str. Hall 5400684 YP_001388842.1 CDS CLC_3015 NC_009698.1 3177225 3180380 R identified by match to protein family HMM PF01832; match to protein family HMM PF07495; beta-N-acetylglucosaminidase complement(3177225..3180380) Clostridium botulinum A str. Hall 5399021 YP_001388843.1 CDS galU NC_009698.1 3180479 3181375 R identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(3180479..3181375) Clostridium botulinum A str. Hall 5401538 YP_001388844.1 CDS CLC_3017 NC_009698.1 3181425 3182501 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(3181425..3182501) Clostridium botulinum A str. Hall 5399218 YP_001388845.1 CDS CLC_3018 NC_009698.1 3182646 3184373 R identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(3182646..3184373) Clostridium botulinum A str. Hall 5398656 YP_001388846.1 CDS CLC_3019 NC_009698.1 3185359 3185895 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(3185359..3185895) Clostridium botulinum A str. Hall 5401113 YP_001388847.1 CDS CLC_3020 NC_009698.1 3186102 3187562 D identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889; Orn/Lys/Arg decarboxylase 3186102..3187562 Clostridium botulinum A str. Hall 5399133 YP_001388848.1 CDS CLC_3021 NC_009698.1 3187747 3188580 R identified by Glimmer3; hypothetical protein complement(3187747..3188580) Clostridium botulinum A str. Hall 5401468 YP_001388849.1 CDS CLC_3022 NC_009698.1 3188778 3189680 R identified by match to protein family HMM PF01515; phosphate acetyl/butyryl transferase complement(3188778..3189680) Clostridium botulinum A str. Hall 5398506 YP_001388850.1 CDS CLC_3023 NC_009698.1 3190124 3191137 R identified by match to protein family HMM PF01070; dehydrogenase, FMN-dependent complement(3190124..3191137) Clostridium botulinum A str. Hall 5400022 YP_001388851.1 CDS CLC_3024 NC_009698.1 3191373 3191843 R identified by match to protein family HMM PF04463; hypothetical protein complement(3191373..3191843) Clostridium botulinum A str. Hall 5400606 YP_001388852.1 CDS CLC_3025 NC_009698.1 3192031 3194397 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(3192031..3194397) Clostridium botulinum A str. Hall 5400960 YP_001388853.1 CDS CLC_3026 NC_009698.1 3194530 3196896 R identified by match to protein family HMM PF01136; U32 family peptidase complement(3194530..3196896) Clostridium botulinum A str. Hall 5401147 YP_001388854.1 CDS CLC_3027 NC_009698.1 3197470 3198348 R hypothetical protein complement(3197470..3198348) Clostridium botulinum A str. Hall 5399724 YP_001388855.1 CDS CLC_3028 NC_009698.1 3198554 3200380 D identified by Glimmer3; hypothetical protein 3198554..3200380 Clostridium botulinum A str. Hall 5399550 YP_001388856.1 CDS CLC_3029 NC_009698.1 3200551 3200703 R identified by Glimmer3; hypothetical protein complement(3200551..3200703) Clostridium botulinum A str. Hall 5399376 YP_001388857.1 CDS CLC_3030 NC_009698.1 3200883 3201149 R identified by Glimmer3; hypothetical protein complement(3200883..3201149) Clostridium botulinum A str. Hall 5401205 YP_001388858.1 CDS CLC_3032 NC_009698.1 3202000 3202590 R identified by match to protein family HMM PF05164; hypothetical protein complement(3202000..3202590) Clostridium botulinum A str. Hall 5399393 YP_001388859.1 CDS pheT NC_009698.1 3202795 3205176 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(3202795..3205176) Clostridium botulinum A str. Hall 5399746 YP_001388860.1 CDS pheS NC_009698.1 3205337 3206356 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(3205337..3206356) Clostridium botulinum A str. Hall 5398323 YP_001388861.1 CDS CLC_3035 NC_009698.1 3206704 3207483 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase complement(3206704..3207483) Clostridium botulinum A str. Hall 5398444 YP_001388862.1 CDS CLC_3036 NC_009698.1 3207574 3208236 R identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA family potassium uptake protein complement(3207574..3208236) Clostridium botulinum A str. Hall 5399978 YP_001388863.1 CDS CLC_3037 NC_009698.1 3208247 3209590 R identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein complement(3208247..3209590) Clostridium botulinum A str. Hall 5400720 YP_001388864.1 CDS rplT NC_009698.1 3209714 3210073 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(3209714..3210073) Clostridium botulinum A str. Hall 5399129 YP_001388865.1 CDS rpmI NC_009698.1 3210103 3210300 R identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(3210103..3210300) Clostridium botulinum A str. Hall 5399237 YP_001388866.1 CDS infC NC_009698.1 3210322 3210876 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(3210322..3210876) Clostridium botulinum A str. Hall 5398943 YP_001388867.1 CDS thrS NC_009698.1 3211131 3213038 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(3211131..3213038) Clostridium botulinum A str. Hall 5400035 YP_001388868.1 CDS CLC_3042 NC_009698.1 3213386 3214285 R identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834; hypothetical protein complement(3213386..3214285) Clostridium botulinum A str. Hall 5400057 YP_001388869.1 CDS CLC_3043 NC_009698.1 3214440 3215147 D hypothetical protein 3214440..3215147 Clostridium botulinum A str. Hall 5400589 YP_001388870.1 CDS CLC_3044 NC_009698.1 3215355 3216926 R ABC transporter permease complement(3215355..3216926) Clostridium botulinum A str. Hall 5401724 YP_001388871.1 CDS CLC_3045 NC_009698.1 3216928 3217623 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3216928..3217623) Clostridium botulinum A str. Hall 5400721 YP_001388872.1 CDS hslO NC_009698.1 3218530 3219420 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(3218530..3219420) Clostridium botulinum A str. Hall 5399456 YP_001388873.1 CDS CLC_3054 NC_009698.1 3219458 3220198 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein complement(3219458..3220198) Clostridium botulinum A str. Hall 5398279 YP_001388874.1 CDS CLC_3055 NC_009698.1 3220284 3220556 R small acid-soluble spore protein complement(3220284..3220556) Clostridium botulinum A str. Hall 5401491 YP_001388875.1 CDS CLC_3056 NC_009698.1 3220855 3221814 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(3220855..3221814) Clostridium botulinum A str. Hall 5398579 YP_001388876.1 CDS CLC_3057 NC_009698.1 3221814 3222833 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein complement(3221814..3222833) Clostridium botulinum A str. Hall 5401684 YP_001388877.1 CDS CLC_3058 NC_009698.1 3222847 3223764 R identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(3222847..3223764) Clostridium botulinum A str. Hall 5398957 YP_001388878.1 CDS CLC_3059 NC_009698.1 3223780 3224709 R identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease complement(3223780..3224709) Clostridium botulinum A str. Hall 5400676 YP_001388879.1 CDS CLC_3060 NC_009698.1 3224790 3226472 R identified by match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein complement(3224790..3226472) Clostridium botulinum A str. Hall 5400801 YP_001388880.1 CDS asd NC_009698.1 3226957 3227949 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 3226957..3227949 Clostridium botulinum A str. Hall 5399265 YP_001388881.1 CDS dapA NC_009698.1 3227972 3228850 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3227972..3228850 Clostridium botulinum A str. Hall 5399068 YP_001388882.1 CDS dapB-2 NC_009698.1 3229073 3229828 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3229073..3229828 Clostridium botulinum A str. Hall 5401532 YP_001388883.1 CDS CLC_3064 NC_009698.1 3230368 3231537 R identified by match to protein family HMM PF00155; aminotransferase, classes I and II complement(3230368..3231537) Clostridium botulinum A str. Hall 5400993 YP_001388884.1 CDS CLC_3065 NC_009698.1 3231795 3232505 D identified by match to protein family HMM PF00132; match to protein family HMM PF08503; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3231795..3232505 Clostridium botulinum A str. Hall 5399412 YP_001388885.1 CDS CLC_3066 NC_009698.1 3232621 3233322 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(3232621..3233322) Clostridium botulinum A str. Hall 5398778 YP_001388886.1 CDS CLC_3067 NC_009698.1 3233400 3233897 R hypothetical protein complement(3233400..3233897) Clostridium botulinum A str. Hall 5398289 YP_001388887.1 CDS CLC_3068 NC_009698.1 3234096 3234848 R identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764; polysaccharide deacetylase complement(3234096..3234848) Clostridium botulinum A str. Hall 5400962 YP_001388888.1 CDS CLC_3069 NC_009698.1 3235012 3235539 D hypothetical protein 3235012..3235539 Clostridium botulinum A str. Hall 5399768 YP_001388889.1 CDS CLC_3070 NC_009698.1 3235542 3236426 R hypothetical protein complement(3235542..3236426) Clostridium botulinum A str. Hall 5401626 YP_001388890.1 CDS CLC_3071 NC_009698.1 3236566 3236826 D hypothetical protein 3236566..3236826 Clostridium botulinum A str. Hall 5399560 YP_001388891.1 CDS folC NC_009698.1 3236835 3238124 R identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(3236835..3238124) Clostridium botulinum A str. Hall 5398566 YP_001388892.1 CDS valS NC_009698.1 3238570 3241215 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(3238570..3241215) Clostridium botulinum A str. Hall 5400168 YP_001388893.1 CDS CLC_3074 NC_009698.1 3241236 3241742 R identified by match to protein family HMM PF00583; acetyltransferase complement(3241236..3241742) Clostridium botulinum A str. Hall 5398537 YP_001388894.1 CDS CLC_3075 NC_009698.1 3242196 3242951 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3242196..3242951) Clostridium botulinum A str. Hall 5401459 YP_001388897.1 CDS CLC_3078 NC_009698.1 3245710 3246738 D identified by match to protein family HMM PF09084; ABC transporter substrate-binding protein 3245710..3246738 Clostridium botulinum A str. Hall 5401630 YP_001388899.1 CDS CLC_3080 NC_009698.1 3247099 3251391 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase complement(3247099..3251391) Clostridium botulinum A str. Hall 5399374 YP_001388900.1 CDS CLC_3081 NC_009698.1 3251713 3252474 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3251713..3252474 Clostridium botulinum A str. Hall 5399164 YP_001388901.1 CDS CLC_3082 NC_009698.1 3252471 3253274 D identified by match to protein family HMM PF00528; ABC transporter permease 3252471..3253274 Clostridium botulinum A str. Hall 5400041 YP_001388902.1 CDS CLC_3083 NC_009698.1 3253418 3253765 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 3253418..3253765 Clostridium botulinum A str. Hall 5400209 YP_001388903.1 CDS CLC_3084 NC_009698.1 3253888 3255063 R identified by match to protein family HMM PF01841; transglutaminase domain-containing protein complement(3253888..3255063) Clostridium botulinum A str. Hall 5399008 YP_001388904.1 CDS recX NC_009698.1 3255088 3256023 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(3255088..3256023) Clostridium botulinum A str. Hall 5400707 YP_001388905.1 CDS CLC_3086 NC_009698.1 3256045 3257274 R identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase complement(3256045..3257274) Clostridium botulinum A str. Hall 5400428 YP_001388906.1 CDS CLC_3087 NC_009698.1 3257495 3257998 D identified by match to protein family HMM PF06177; hypothetical protein 3257495..3257998 Clostridium botulinum A str. Hall 5399850 YP_001388907.1 CDS CLC_3088 NC_009698.1 3258036 3258623 D identified by match to protein family HMM PF01613; flavin reductase 3258036..3258623 Clostridium botulinum A str. Hall 5399235 YP_001388908.1 CDS CLC_3089 NC_009698.1 3258680 3259375 D identified by match to protein family HMM PF01471; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 3258680..3259375 Clostridium botulinum A str. Hall 5399913 YP_001388909.1 CDS CLC_3090 NC_009698.1 3259410 3260285 R hypothetical protein complement(3259410..3260285) Clostridium botulinum A str. Hall 5399534 YP_001388910.1 CDS CLC_3091 NC_009698.1 3260327 3260605 R identified by match to protein family HMM PF06865; hypothetical protein complement(3260327..3260605) Clostridium botulinum A str. Hall 5401127 YP_001388911.1 CDS proC NC_009698.1 3260733 3261539 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(3260733..3261539) Clostridium botulinum A str. Hall 5400629 YP_001388912.1 CDS CLC_3093 NC_009698.1 3261651 3264014 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase complement(3261651..3264014) Clostridium botulinum A str. Hall 5401438 YP_001388913.1 CDS CLC_3094 NC_009698.1 3264021 3264923 R identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein complement(3264021..3264923) Clostridium botulinum A str. Hall 5400247 YP_001388914.1 CDS CLC_3095 NC_009698.1 3264987 3265556 R identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein complement(3264987..3265556) Clostridium botulinum A str. Hall 5400464 YP_001388915.1 CDS CLC_3096 NC_009698.1 3266191 3266919 R identified by match to protein family HMM PF00533; hypothetical protein complement(3266191..3266919) Clostridium botulinum A str. Hall 5400896 YP_001388916.1 CDS CLC_3097 NC_009698.1 3266956 3267297 R identified by Glimmer3; hypothetical protein complement(3266956..3267297) Clostridium botulinum A str. Hall 5400199 YP_001388917.1 CDS CLC_3098 NC_009698.1 3267309 3269045 R identified by match to protein family HMM PF00092; von Willebrand factor A complement(3267309..3269045) Clostridium botulinum A str. Hall 5400578 YP_001388918.1 CDS CLC_3099 NC_009698.1 3269068 3270396 R identified by match to protein family HMM PF07728; ATPase AAA complement(3269068..3270396) Clostridium botulinum A str. Hall 5398846 YP_001388919.1 CDS CLC_3100 NC_009698.1 3271019 3272095 D hypothetical protein 3271019..3272095 Clostridium botulinum A str. Hall 5401819 YP_001388920.1 CDS CLC_3101 NC_009698.1 3272164 3273249 D hypothetical protein 3272164..3273249 Clostridium botulinum A str. Hall 5401215 YP_001388921.1 CDS CLC_3102 NC_009698.1 3273428 3273622 R identified by match to protein family HMM PF00037; (Fe-S)-binding protein complement(3273428..3273622) Clostridium botulinum A str. Hall 5398479 YP_001388922.1 CDS CLC_3103 NC_009698.1 3273865 3274758 D hypothetical protein 3273865..3274758 Clostridium botulinum A str. Hall 5399322 YP_001388923.1 CDS CLC_3104 NC_009698.1 3274761 3275858 D R-2-hydroxyglutaryl-CoA dehydratase subunit 3274761..3275858 Clostridium botulinum A str. Hall 5400949 YP_001388924.1 CDS CLC_3105 NC_009698.1 3275839 3276813 D identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 3275839..3276813 Clostridium botulinum A str. Hall 5401582 YP_001388925.1 CDS CLC_3106 NC_009698.1 3276882 3278510 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator complement(3276882..3278510) Clostridium botulinum A str. Hall 5400245 YP_001388926.1 CDS CLC_3107 NC_009698.1 3278868 3279875 R identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein complement(3278868..3279875) Clostridium botulinum A str. Hall 5400997 YP_001388927.1 CDS CLC_3108 NC_009698.1 3279888 3280667 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein complement(3279888..3280667) Clostridium botulinum A str. Hall 5399878 YP_001388928.1 CDS bcd NC_009698.1 3280679 3281818 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase complement(3280679..3281818) Clostridium botulinum A str. Hall 5399707 YP_001388929.1 CDS CLC_3110 NC_009698.1 3282012 3283190 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase complement(3282012..3283190) Clostridium botulinum A str. Hall 5398355 YP_001388930.1 CDS hbd NC_009698.1 3283215 3284045 R identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase complement(3283215..3284045) Clostridium botulinum A str. Hall 5401458 YP_001388931.1 CDS crt NC_009698.1 3284076 3284858 R identified by match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase complement(3284076..3284858) Clostridium botulinum A str. Hall 5399807 YP_001388932.1 CDS CLC_3113 NC_009698.1 3285274 3285492 R identified by Glimmer3; hypothetical protein complement(3285274..3285492) Clostridium botulinum A str. Hall 5399824 YP_001388933.1 CDS CLC_3114 NC_009698.1 3285536 3286633 R identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein complement(3285536..3286633) Clostridium botulinum A str. Hall 5401031 YP_001388934.1 CDS CLC_3115 NC_009698.1 3286909 3288201 R identified by match to protein family HMM PF00860; xanthine/uracil permease complement(3286909..3288201) Clostridium botulinum A str. Hall 5398498 YP_001388935.1 CDS CLC_3116 NC_009698.1 3288603 3289499 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein complement(3288603..3289499) Clostridium botulinum A str. Hall 5401614 YP_001388936.1 CDS CLC_3117 NC_009698.1 3289567 3289719 R identified by Glimmer3; hypothetical protein complement(3289567..3289719) Clostridium botulinum A str. Hall 5398307 YP_001388937.1 CDS CLC_3118 NC_009698.1 3289884 3290003 R identified by Glimmer3; hypothetical protein complement(3289884..3290003) Clostridium botulinum A str. Hall 5399869 YP_001388938.1 CDS lgt NC_009698.1 3290105 3290869 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3290105..3290869) Clostridium botulinum A str. Hall 5399352 YP_001388939.1 CDS CLC_3120 NC_009698.1 3291078 3291542 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(3291078..3291542) Clostridium botulinum A str. Hall 5400610 YP_001388940.1 CDS CLC_3121 NC_009698.1 3291585 3291950 R hypothetical protein complement(3291585..3291950) Clostridium botulinum A str. Hall 5399194 YP_001388941.1 CDS CLC_3122 NC_009698.1 3292081 3292836 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 3292081..3292836 Clostridium botulinum A str. Hall 5400023 YP_001388942.1 CDS CLC_3123 NC_009698.1 3292932 3294938 R identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein complement(3292932..3294938) Clostridium botulinum A str. Hall 5401395 YP_001388943.1 CDS CLC_3124 NC_009698.1 3295133 3295678 R identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin complement(3295133..3295678) Clostridium botulinum A str. Hall 5398438 YP_001388944.1 CDS pflA NC_009698.1 3296320 3297018 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme complement(3296320..3297018) Clostridium botulinum A str. Hall 5400820 YP_001388945.1 CDS pfl NC_009698.1 3297198 3299426 R identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1 complement(3297198..3299426) Clostridium botulinum A str. Hall 5401090 YP_001388946.1 CDS CLC_3127 NC_009698.1 3299938 3300189 R hypothetical protein complement(3299938..3300189) Clostridium botulinum A str. Hall 5398655 YP_001388947.1 CDS CLC_3128 NC_009698.1 3300617 3301186 R identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 complement(3300617..3301186) Clostridium botulinum A str. Hall 5400939 YP_001388948.1 CDS CLC_3129 NC_009698.1 3301353 3301967 R lipoprotein complement(3301353..3301967) Clostridium botulinum A str. Hall 5399313 YP_001388949.1 CDS CLC_3130 NC_009698.1 3302193 3302621 D identified by match to protein family HMM PF01475; FUR family transcriptional regulator 3302193..3302621 Clostridium botulinum A str. Hall 5400466 YP_001388950.1 CDS CLC_3131 NC_009698.1 3302690 3303925 R identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(3302690..3303925) Clostridium botulinum A str. Hall 5398401 YP_001388951.1 CDS CLC_3132 NC_009698.1 3304026 3304961 D hypothetical protein 3304026..3304961 Clostridium botulinum A str. Hall 5400391 YP_001388952.1 CDS CLC_3133 NC_009698.1 3305121 3306077 R identified by match to protein family HMM PF08279; hypothetical protein complement(3305121..3306077) Clostridium botulinum A str. Hall 5400505 YP_001388953.1 CDS CLC_3134 NC_009698.1 3306292 3306702 R hypothetical protein complement(3306292..3306702) Clostridium botulinum A str. Hall 5401167 YP_001388954.1 CDS CLC_3135 NC_009698.1 3306757 3307002 R identified by Glimmer3; hypothetical protein complement(3306757..3307002) Clostridium botulinum A str. Hall 5398512 YP_001388955.1 CDS CLC_3136 NC_009698.1 3307054 3307482 R identified by Glimmer3; hypothetical protein complement(3307054..3307482) Clostridium botulinum A str. Hall 5400517 YP_001388956.1 CDS CLC_3137 NC_009698.1 3307701 3308426 R identified by match to protein family HMM PF02517; CAAX amino terminal protease complement(3307701..3308426) Clostridium botulinum A str. Hall 5400026 YP_001388957.1 CDS engB NC_009698.1 3308450 3309034 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(3308450..3309034) Clostridium botulinum A str. Hall 5400546 YP_001388958.1 CDS lon NC_009698.1 3309049 3311370 R identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La complement(3309049..3311370) Clostridium botulinum A str. Hall 5398804 YP_001388959.1 CDS lonB NC_009698.1 3311508 3313187 R identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902; ATP-dependent protease LonB complement(3311508..3313187) Clostridium botulinum A str. Hall 5398581 YP_001388960.1 CDS clpX NC_009698.1 3313315 3314604 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(3313315..3314604) Clostridium botulinum A str. Hall 5400033 YP_001388961.1 CDS clpP NC_009698.1 3314624 3315208 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(3314624..3315208) Clostridium botulinum A str. Hall 5400447 YP_001388962.1 CDS tig NC_009698.1 3315334 3316626 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(3315334..3316626) Clostridium botulinum A str. Hall 5400318 YP_001388963.1 CDS CLC_3144 NC_009698.1 3316804 3317589 R identified by match to protein family HMM PF01261; AP endonuclease complement(3316804..3317589) Clostridium botulinum A str. Hall 5399751 YP_001388964.1 CDS CLC_3145 NC_009698.1 3317696 3318508 R hypothetical protein complement(3317696..3318508) Clostridium botulinum A str. Hall 5400210 YP_001388965.1 CDS pyrE NC_009698.1 3318722 3319297 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(3318722..3319297) Clostridium botulinum A str. Hall 5398317 YP_001388966.1 CDS pyrD NC_009698.1 3319331 3320227 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(3319331..3320227) Clostridium botulinum A str. Hall 5399787 YP_001388967.1 CDS pyrK NC_009698.1 3320227 3320982 R responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit complement(3320227..3320982) Clostridium botulinum A str. Hall 5400082 YP_001388968.1 CDS pyrF NC_009698.1 3321127 3321978 R type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(3321127..3321978) Clostridium botulinum A str. Hall 5400068 YP_001388969.1 CDS pyrC NC_009698.1 3322002 3323192 R identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type complement(3322002..3323192) Clostridium botulinum A str. Hall 5401636 YP_001388970.1 CDS pyrI NC_009698.1 3323214 3323654 R involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase complement(3323214..3323654) Clostridium botulinum A str. Hall 5401656 YP_001388971.1 CDS pyrB NC_009698.1 3323656 3324579 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(3323656..3324579) Clostridium botulinum A str. Hall 5401789 YP_001388972.1 CDS CLC_3153 NC_009698.1 3324834 3325592 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase complement(3324834..3325592) Clostridium botulinum A str. Hall 5399955 YP_001388973.1 CDS CLC_3154 NC_009698.1 3325615 3325812 R hypothetical protein complement(3325615..3325812) Clostridium botulinum A str. Hall 5401654 YP_001388974.1 CDS CLC_3155 NC_009698.1 3326172 3327431 R identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit complement(3326172..3327431) Clostridium botulinum A str. Hall 5399407 YP_001388975.1 CDS CLC_3156 NC_009698.1 3327560 3328708 R identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit complement(3327560..3328708) Clostridium botulinum A str. Hall 5401261 YP_001388976.1 CDS CLC_3157 NC_009698.1 3328820 3329152 R hypothetical protein complement(3328820..3329152) Clostridium botulinum A str. Hall 5399935 YP_001388977.1 CDS CLC_3158 NC_009698.1 3329189 3329947 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3329189..3329947) Clostridium botulinum A str. Hall 5401555 YP_001388978.1 CDS CLC_3160 NC_009698.1 3330714 3331250 R identified by similarity to GB:CAJ69248.1; hypothetical protein complement(3330714..3331250) Clostridium botulinum A str. Hall 5401530 YP_001388979.1 CDS CLC_3161 NC_009698.1 3331302 3331520 R identified by similarity to GB:CAJ69249.1; hypothetical protein complement(3331302..3331520) Clostridium botulinum A str. Hall 5400634 YP_001388981.1 CDS CLC_3163 NC_009698.1 3331676 3332242 R hypothetical protein complement(3331676..3332242) Clostridium botulinum A str. Hall 5399781 YP_001388982.1 CDS CLC_3164 NC_009698.1 3332270 3333370 R lipoprotein complement(3332270..3333370) Clostridium botulinum A str. Hall 5399413 YP_001388983.1 CDS CLC_3165 NC_009698.1 3333388 3333852 R lipoprotein complement(3333388..3333852) Clostridium botulinum A str. Hall 5401262 YP_001388984.1 CDS CLC_3166 NC_009698.1 3333868 3334959 R identified by match to protein family HMM PF03773; permease complement(3333868..3334959) Clostridium botulinum A str. Hall 5401520 YP_001388985.1 CDS CLC_3167 NC_009698.1 3334959 3335219 R identified by Glimmer3; hypothetical protein complement(3334959..3335219) Clostridium botulinum A str. Hall 5399077 YP_001388986.1 CDS CLC_3203 NC_009698.1 3337777 3338247 R identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase complement(3337777..3338247) Clostridium botulinum A str. Hall 5399346 YP_001388987.1 CDS CLC_3204 NC_009698.1 3338264 3338863 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(3338264..3338863) Clostridium botulinum A str. Hall 5401319 YP_001388988.1 CDS CLC_3205 NC_009698.1 3338967 3340340 D hypothetical protein 3338967..3340340 Clostridium botulinum A str. Hall 5401454 YP_001388989.1 CDS CLC_3206 NC_009698.1 3340453 3340608 D identified by similarity to GB:AAM23887.1; hypothetical protein 3340453..3340608 Clostridium botulinum A str. Hall 5399705 YP_001388990.1 CDS CLC_3207 NC_009698.1 3340611 3342173 R identified by match to protein family HMM PF00496; solute-binding family 5 protein complement(3340611..3342173) Clostridium botulinum A str. Hall 5399782 YP_001388991.1 CDS gatB NC_009698.1 3342327 3343757 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(3342327..3343757) Clostridium botulinum A str. Hall 5401579 YP_001388992.1 CDS gatA NC_009698.1 3343793 3345250 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(3343793..3345250) Clostridium botulinum A str. Hall 5398848 YP_001388993.1 CDS gatC NC_009698.1 3345287 3345574 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(3345287..3345574) Clostridium botulinum A str. Hall 5398803 YP_001388994.1 CDS CLC_3211 NC_009698.1 3345709 3346920 R identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein complement(3345709..3346920) Clostridium botulinum A str. Hall 5399472 YP_001388995.1 CDS CLC_3212 NC_009698.1 3347217 3347486 R hypothetical protein complement(3347217..3347486) Clostridium botulinum A str. Hall 5399675 YP_001388996.1 CDS ligA NC_009698.1 3347587 3349581 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(3347587..3349581) Clostridium botulinum A str. Hall 5399526 YP_001388997.1 CDS pcrA NC_009698.1 3349593 3351809 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA complement(3349593..3351809) Clostridium botulinum A str. Hall 5400788 YP_001388998.1 CDS CLC_3215 NC_009698.1 3351936 3352235 R identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; TrpR family protein complement(3351936..3352235) Clostridium botulinum A str. Hall 5399117 YP_001388999.1 CDS CLC_3216 NC_009698.1 3352533 3353249 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase complement(3352533..3353249) Clostridium botulinum A str. Hall 5400097 YP_001389000.1 CDS CLC_3217 NC_009698.1 3353333 3354049 R identified by match to protein family HMM PF01464; Slt family transglycosylase complement(3353333..3354049) Clostridium botulinum A str. Hall 5401175 YP_001389001.1 CDS CLC_3218 NC_009698.1 3354063 3356066 R identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein complement(3354063..3356066) Clostridium botulinum A str. Hall 5398403 YP_001389002.1 CDS CLC_3219 NC_009698.1 3356200 3356367 D identified by Glimmer3; hypothetical protein 3356200..3356367 Clostridium botulinum A str. Hall 5398749 YP_001389003.1 CDS CLC_3220 NC_009698.1 3356531 3356965 R identified by match to protein family HMM PF02639; hypothetical protein complement(3356531..3356965) Clostridium botulinum A str. Hall 5399416 YP_001389004.1 CDS pgi NC_009698.1 3356976 3358328 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(3356976..3358328) Clostridium botulinum A str. Hall 5400435 YP_001389005.1 CDS CLC_3222 NC_009698.1 3358412 3358582 R hypothetical protein complement(3358412..3358582) Clostridium botulinum A str. Hall 5400322 YP_001389006.1 CDS CLC_3223 NC_009698.1 3358891 3359535 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3358891..3359535) Clostridium botulinum A str. Hall 5401739 YP_001389007.1 CDS ldhA-1 NC_009698.1 3360843 3361847 D identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 3360843..3361847 Clostridium botulinum A str. Hall 5401136 YP_001389008.1 CDS ldhA-2 NC_009698.1 3362034 3363029 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase complement(3362034..3363029) Clostridium botulinum A str. Hall 5399042 YP_001389009.1 CDS CLC_3227 NC_009698.1 3363843 3365021 R hypothetical protein complement(3363843..3365021) Clostridium botulinum A str. Hall 5400111 YP_001389010.1 CDS CLC_3228 NC_009698.1 3365239 3366435 R identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein complement(3365239..3366435) Clostridium botulinum A str. Hall 5399871 YP_001389011.1 CDS CLC_3229 NC_009698.1 3366453 3367247 R identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein complement(3366453..3367247) Clostridium botulinum A str. Hall 5400129 YP_001389012.1 CDS CLC_3230 NC_009698.1 3367260 3368393 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(3367260..3368393) Clostridium botulinum A str. Hall 5401512 YP_001389013.1 CDS fldC NC_009698.1 3368560 3369684 R identified by match to protein family HMM PF06050; R-phenyllactate dehydratase subunit C complement(3368560..3369684) Clostridium botulinum A str. Hall 5399956 YP_001389014.1 CDS fldB NC_009698.1 3369686 3370909 R identified by match to protein family HMM PF06050; R-phenyllactate dehydratase subunit B complement(3369686..3370909) Clostridium botulinum A str. Hall 5398534 YP_001389015.1 CDS fldI NC_009698.1 3370914 3371708 R identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; R-phenyllactate dehydratase activator complement(3370914..3371708) Clostridium botulinum A str. Hall 5398931 YP_001389016.1 CDS fldA NC_009698.1 3371708 3372946 R identified by match to protein family HMM PF02515; E-cinnamoyl-CoA:R-phenyllactate CoA transferase complement(3371708..3372946) Clostridium botulinum A str. Hall 5398913 YP_001389017.1 CDS CLC_3235 NC_009698.1 3373000 3374631 R identified by match to protein family HMM PF00501; AMP-binding protein complement(3373000..3374631) Clostridium botulinum A str. Hall 5399098 YP_001389018.1 CDS CLC_3236 NC_009698.1 3375097 3376419 R identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein complement(3375097..3376419) Clostridium botulinum A str. Hall 5398529 YP_001389019.1 CDS guaA NC_009698.1 3376878 3378410 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(3376878..3378410) Clostridium botulinum A str. Hall 5400183 YP_001389020.1 CDS guaB NC_009698.1 3378423 3379877 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(3378423..3379877) Clostridium botulinum A str. Hall 5398670 YP_001389021.1 CDS CLC_3239 NC_009698.1 3380317 3381066 D identified by match to protein family HMM PF01171; PP-loop family protein 3380317..3381066 Clostridium botulinum A str. Hall 5401368 YP_001389022.1 CDS groEL NC_009698.1 3381145 3382770 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(3381145..3382770) Clostridium botulinum A str. Hall 5399090 YP_001389023.1 CDS groES NC_009698.1 3382800 3383087 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(3382800..3383087) Clostridium botulinum A str. Hall 5400312 YP_001389024.1 CDS CLC_3243 NC_009698.1 3383403 3384047 D identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein 3383403..3384047 Clostridium botulinum A str. Hall 5398547 YP_001389025.1 CDS CLC_3242 NC_009698.1 3384042 3384776 R identified by match to protein family HMM PF09335; hypothetical protein complement(3384042..3384776) Clostridium botulinum A str. Hall 5399366 YP_001389026.1 CDS CLC_3244 NC_009698.1 3385229 3386722 R identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase complement(3385229..3386722) Clostridium botulinum A str. Hall 5400036 YP_001389027.1 CDS CLC_3245 NC_009698.1 3386895 3387812 R identified by match to protein family HMM PF00730; match to protein family HMM PF07934; 8-oxoguanine DNA glycosylase complement(3386895..3387812) Clostridium botulinum A str. Hall 5401028 YP_001389028.1 CDS gltA-2 NC_009698.1 3387962 3389347 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(3387962..3389347) Clostridium botulinum A str. Hall 5400671 YP_001389029.1 CDS CLC_3247 NC_009698.1 3389347 3390237 R identified by match to protein family HMM PF00175; ferredoxin-NADP reductase complement(3389347..3390237) Clostridium botulinum A str. Hall 5398673 YP_001389030.1 CDS CLC_3248 NC_009698.1 3390468 3391100 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(3390468..3391100) Clostridium botulinum A str. Hall 5399649 YP_001389031.1 CDS CLC_3249 NC_009698.1 3391300 3393222 D identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 3391300..3393222 Clostridium botulinum A str. Hall 5400942 YP_001389032.1 CDS CLC_3250 NC_009698.1 3393563 3394327 R identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator complement(3393563..3394327) Clostridium botulinum A str. Hall 5398856 YP_001389033.1 CDS CLC_3251 NC_009698.1 3394328 3395962 R identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase complement(3394328..3395962) Clostridium botulinum A str. Hall 5399548 YP_001389034.1 CDS cstA NC_009698.1 3396205 3397623 D identified by match to protein family HMM PF02554; carbon starvation protein CstA 3396205..3397623 Clostridium botulinum A str. Hall 5400438 YP_001389035.1 CDS CLC_3253 NC_009698.1 3397674 3400601 R identified by match to protein family HMM PF05193; match to protein family HMM PF08367; peptidase complement(3397674..3400601) Clostridium botulinum A str. Hall 5400352 YP_001389036.1 CDS pyc NC_009698.1 3400982 3404416 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(3400982..3404416) Clostridium botulinum A str. Hall 5401462 YP_001389037.1 CDS CLC_3255 NC_009698.1 3404876 3405898 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(3404876..3405898) Clostridium botulinum A str. Hall 5398843 YP_001389038.1 CDS CLC_3256 NC_009698.1 3406122 3406745 D identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 3406122..3406745 Clostridium botulinum A str. Hall 5399505 YP_001389040.1 CDS CLC_3258 NC_009698.1 3407122 3408378 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(3407122..3408378) Clostridium botulinum A str. Hall 5401084 YP_001389041.1 CDS CLC_3261 NC_009698.1 3408746 3409132 R hypothetical protein complement(3408746..3409132) Clostridium botulinum A str. Hall 5400448 YP_001389042.1 CDS CLC_3262 NC_009698.1 3409195 3410085 R hypothetical protein complement(3409195..3410085) Clostridium botulinum A str. Hall 5401219 YP_001389043.1 CDS CLC_3263 NC_009698.1 3410101 3411009 R identified by match to protein family HMM PF01297; manganese/zinc/iron chelate ABC transporter substrate-binding protein complement(3410101..3411009) Clostridium botulinum A str. Hall 5401683 YP_001389044.1 CDS CLC_3264 NC_009698.1 3411207 3412448 D identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 3411207..3412448 Clostridium botulinum A str. Hall 5399186 YP_001389045.1 CDS CLC_3265 NC_009698.1 3412586 3413044 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 3412586..3413044 Clostridium botulinum A str. Hall 5401396 YP_001389046.1 CDS CLC_3266 NC_009698.1 3413041 3413754 D identified by match to protein family HMM PF00814; glycoprotease 3413041..3413754 Clostridium botulinum A str. Hall 5401440 YP_001389047.1 CDS rimI NC_009698.1 3413747 3414205 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 3413747..3414205 Clostridium botulinum A str. Hall 5400919 YP_001389048.1 CDS tyrS-2 NC_009698.1 3414563 3415786 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(3414563..3415786) Clostridium botulinum A str. Hall 5399826 YP_001389049.1 CDS CLC_3269 NC_009698.1 3416019 3416426 R hypothetical protein complement(3416019..3416426) Clostridium botulinum A str. Hall 5401086 YP_001389050.1 CDS CLC_3270 NC_009698.1 3416562 3417719 R identified by match to protein family HMM PF04326; ATP-binding protein complement(3416562..3417719) Clostridium botulinum A str. Hall 5398773 YP_001389051.1 CDS CLC_3271 NC_009698.1 3417867 3418430 R hypothetical protein complement(3417867..3418430) Clostridium botulinum A str. Hall 5401197 YP_001389052.1 CDS CLC_3272 NC_009698.1 3418513 3418674 R identified by Glimmer3; hypothetical protein complement(3418513..3418674) Clostridium botulinum A str. Hall 5401302 YP_001389053.1 CDS CLC_3273 NC_009698.1 3418937 3419929 D identified by match to protein family HMM PF01569; PAP2 family protein 3418937..3419929 Clostridium botulinum A str. Hall 5398722 YP_001389054.1 CDS prfC NC_009698.1 3420018 3421607 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 complement(3420018..3421607) Clostridium botulinum A str. Hall 5401130 YP_001389055.1 CDS CLC_3275 NC_009698.1 3422112 3422918 D identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 3422112..3422918 Clostridium botulinum A str. Hall 5399851 YP_001389056.1 CDS trpS NC_009698.1 3423037 3424035 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(3423037..3424035) Clostridium botulinum A str. Hall 5398897 YP_001389057.1 CDS CLC_3277 NC_009698.1 3424214 3424351 R identified by Glimmer3; hypothetical protein complement(3424214..3424351) Clostridium botulinum A str. Hall 5401501 YP_001389058.1 CDS CLC_3278 NC_009698.1 3424648 3425022 R identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332; desulfoferrodoxin complement(3424648..3425022) Clostridium botulinum A str. Hall 5398494 YP_001389059.1 CDS CLC_3279 NC_009698.1 3425205 3425399 D hypothetical protein 3425205..3425399 Clostridium botulinum A str. Hall 5400660 YP_001389060.1 CDS cgs NC_009698.1 3425612 3434260 R identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; cyclic beta 1-2 glucan synthetase complement(3425612..3434260) Clostridium botulinum A str. Hall 5401542 YP_001389061.1 CDS lysA NC_009698.1 3434525 3435811 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(3434525..3435811) Clostridium botulinum A str. Hall 5400992 YP_001389062.1 CDS lysC NC_009698.1 3435827 3437029 R identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; aspartokinase complement(3435827..3437029) Clostridium botulinum A str. Hall 5399635 YP_001389063.1 CDS CLC_3283 NC_009698.1 3437425 3438723 R catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 complement(3437425..3438723) Clostridium botulinum A str. Hall 5399937 YP_001389064.1 CDS CLC_3284 NC_009698.1 3438872 3440050 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 3438872..3440050 Clostridium botulinum A str. Hall 5399296 YP_001389065.1 CDS CLC_3285 NC_009698.1 3440187 3441278 D hypothetical protein 3440187..3441278 Clostridium botulinum A str. Hall 5400760 YP_001389066.1 CDS CLC_3286 NC_009698.1 3441543 3443672 R helicase complement(3441543..3443672) Clostridium botulinum A str. Hall 5399729 YP_001389067.1 CDS ftsH-1 NC_009698.1 3443693 3445669 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH complement(3443693..3445669) Clostridium botulinum A str. Hall 5398999 YP_001389068.1 CDS CLC_3288 NC_009698.1 3446096 3447487 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(3446096..3447487) Clostridium botulinum A str. Hall 5400823 YP_001389069.1 CDS proS NC_009698.1 3447688 3449124 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(3447688..3449124) Clostridium botulinum A str. Hall 5398236 YP_001389070.1 CDS CLC_3290 NC_009698.1 3449551 3449793 R identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein complement(3449551..3449793) Clostridium botulinum A str. Hall 5399601 YP_001389071.1 CDS CLC_3291 NC_009698.1 3449811 3449999 R identified by Glimmer3; hypothetical protein complement(3449811..3449999) Clostridium botulinum A str. Hall 5399197 YP_001389072.1 CDS CLC_3292 NC_009698.1 3450378 3452036 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; SulP family sulfate permease complement(3450378..3452036) Clostridium botulinum A str. Hall 5401412 YP_001389073.2 CDS CLC_3293 NC_009698.1 3452250 3453635 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(3452250..3453635) Clostridium botulinum A str. Hall 5398925 YP_001389074.1 CDS CLC_3294 NC_009698.1 3453619 3454311 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(3453619..3454311) Clostridium botulinum A str. Hall 5399979 YP_001389075.1 CDS CLC_3295 NC_009698.1 3454576 3455784 R hypothetical protein complement(3454576..3455784) Clostridium botulinum A str. Hall 5400512 YP_001389076.1 CDS CLC_3296 NC_009698.1 3455789 3456694 R identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein complement(3455789..3456694) Clostridium botulinum A str. Hall 5401394 YP_001389077.1 CDS CLC_3297 NC_009698.1 3457051 3457254 D hypothetical protein 3457051..3457254 Clostridium botulinum A str. Hall 5399762 YP_001389078.1 CDS CLC_3298 NC_009698.1 3457381 3458376 R hypothetical protein complement(3457381..3458376) Clostridium botulinum A str. Hall 5401125 YP_001389079.1 CDS CLC_3299 NC_009698.1 3458743 3459828 R identified by match to protein family HMM PF05913; hypothetical protein complement(3458743..3459828) Clostridium botulinum A str. Hall 5399055 YP_001389080.1 CDS CLC_3300 NC_009698.1 3460135 3461028 R identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase complement(3460135..3461028) Clostridium botulinum A str. Hall 5398776 YP_001389081.1 CDS CLC_3301 NC_009698.1 3461088 3461384 R identified by match to protein family HMM PF02255; PTS system lactose/cellobiose-specific family IIA subunit complement(3461088..3461384) Clostridium botulinum A str. Hall 5398699 YP_001389082.1 CDS CLC_3302 NC_009698.1 3461626 3461934 R identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific family IIB subunit complement(3461626..3461934) Clostridium botulinum A str. Hall 5398968 YP_001389083.1 CDS CLC_3303 NC_009698.1 3462054 3464783 R identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator complement(3462054..3464783) Clostridium botulinum A str. Hall 5401726 YP_001389084.1 CDS CLC_3304 NC_009698.1 3464908 3466200 R identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system lactose/cellobiose family transporter subunit IIC complement(3464908..3466200) Clostridium botulinum A str. Hall 5401108 YP_001389085.1 CDS CLC_3305 NC_009698.1 3466282 3467619 R identified by match to protein family HMM PF02056; glycosyl hydrolase complement(3466282..3467619) Clostridium botulinum A str. Hall 5400002 YP_001389086.1 CDS CLC_3306 NC_009698.1 3467975 3469288 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(3467975..3469288) Clostridium botulinum A str. Hall 5400399 YP_001389087.1 CDS CLC_3307 NC_009698.1 3469528 3470127 D identified by match to protein family HMM PF00589; phage integrase site specific recombinase 3469528..3470127 Clostridium botulinum A str. Hall 5398290 YP_001389088.1 CDS speD NC_009698.1 3470438 3470788 R identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330; S-adenosylmethionine decarboxylase complement(3470438..3470788) Clostridium botulinum A str. Hall 5399193 YP_001389089.1 CDS CLC_3309 NC_009698.1 3470942 3472138 R hypothetical protein complement(3470942..3472138) Clostridium botulinum A str. Hall 5399292 YP_001389090.1 CDS CLC_3310 NC_009698.1 3472660 3472935 R hypothetical protein complement(3472660..3472935) Clostridium botulinum A str. Hall 5399060 YP_001389091.1 CDS CLC_3311 NC_009698.1 3473431 3474285 R identified by match to protein family HMM PF05368; hypothetical protein complement(3473431..3474285) Clostridium botulinum A str. Hall 5400476 YP_001389092.1 CDS rumA-2 NC_009698.1 3475275 3476660 R identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA complement(3475275..3476660) Clostridium botulinum A str. Hall 5401105 YP_001389093.1 CDS CLC_3313 NC_009698.1 3476893 3477246 R hypothetical protein complement(3476893..3477246) Clostridium botulinum A str. Hall 5399898 YP_001389094.1 CDS CLC_3314 NC_009698.1 3477573 3478583 R identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase complement(3477573..3478583) Clostridium botulinum A str. Hall 5399362 YP_001389095.1 CDS pykA NC_009698.1 3478727 3480484 R identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(3478727..3480484) Clostridium botulinum A str. Hall 5401025 YP_001389096.1 CDS pfkA NC_009698.1 3480518 3481477 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(3480518..3481477) Clostridium botulinum A str. Hall 5398510 YP_001389097.1 CDS dnaE NC_009698.1 3481719 3485276 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(3481719..3485276) Clostridium botulinum A str. Hall 5398395 YP_001389098.1 CDS CLC_3318 NC_009698.1 3485439 3486386 R identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein complement(3485439..3486386) Clostridium botulinum A str. Hall 5401522 YP_001389099.1 CDS CLC_3319 NC_009698.1 3486393 3487730 R identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein complement(3486393..3487730) Clostridium botulinum A str. Hall 5400344 YP_001389100.1 CDS CLC_3320 NC_009698.1 3487727 3488611 R identified by match to protein family HMM PF03668; hypothetical protein complement(3487727..3488611) Clostridium botulinum A str. Hall 5400836 YP_001389101.1 CDS murB NC_009698.1 3488731 3489651 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(3488731..3489651) Clostridium botulinum A str. Hall 5399731 YP_001389102.1 CDS CLC_3322 NC_009698.1 3489720 3490451 R identified by match to protein family HMM PF02811; hydrolase complement(3489720..3490451) Clostridium botulinum A str. Hall 5399343 YP_001389103.1 CDS uvrC NC_009698.1 3490500 3492356 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3490500..3492356) Clostridium botulinum A str. Hall 5401217 YP_001389104.1 CDS CLC_3324 NC_009698.1 3492370 3492978 R identified by match to protein family HMM PF04307; metal-dependent hydrolase, membrane-bound complement(3492370..3492978) Clostridium botulinum A str. Hall 5401271 YP_001389105.1 CDS CLC_3325 NC_009698.1 3493165 3494061 R identified by match to protein family HMM PF01336; match to protein family HMM PF01966; HD domain-containing protein complement(3493165..3494061) Clostridium botulinum A str. Hall 5398855 YP_001389106.1 CDS CLC_3326 NC_009698.1 3494089 3495519 R identified by match to protein family HMM PF00905; penicillin-binding protein complement(3494089..3495519) Clostridium botulinum A str. Hall 5398783 YP_001389107.1 CDS CLC_3327 NC_009698.1 3495524 3496753 R identified by match to protein family HMM PF01098; cell cycle protein FtsW complement(3495524..3496753) Clostridium botulinum A str. Hall 5400085 YP_001389108.1 CDS CLC_3328 NC_009698.1 3496764 3497201 R identified by match to protein family HMM PF00498; FHA domain-containing protein complement(3496764..3497201) Clostridium botulinum A str. Hall 5398705 YP_001389109.1 CDS uvrA NC_009698.1 3497300 3500122 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(3497300..3500122) Clostridium botulinum A str. Hall 5398483 YP_001389110.1 CDS uvrB NC_009698.1 3500141 3502129 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3500141..3502129) Clostridium botulinum A str. Hall 5401333 YP_001389111.1 CDS CLC_3331 NC_009698.1 3502131 3503426 R hypothetical protein complement(3502131..3503426) Clostridium botulinum A str. Hall 5401633 YP_001389112.1 CDS CLC_3332 NC_009698.1 3503515 3504720 R identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(3503515..3504720) Clostridium botulinum A str. Hall 5399242 YP_001389113.1 CDS CLC_3333 NC_009698.1 3504930 3505820 R identified by match to protein family HMM PF02687; cell division protein FtsX complement(3504930..3505820) Clostridium botulinum A str. Hall 5401403 YP_001389114.1 CDS CLC_3334 NC_009698.1 3505810 3506496 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE complement(3505810..3506496) Clostridium botulinum A str. Hall 5401346 YP_001389115.1 CDS CLC_3335 NC_009698.1 3506652 3507554 R identified by match to protein family HMM PF02588; hypothetical protein complement(3506652..3507554) Clostridium botulinum A str. Hall 5398751 YP_001389116.1 CDS CLC_3336 NC_009698.1 3507647 3507856 R identified by Glimmer3; hypothetical protein complement(3507647..3507856) Clostridium botulinum A str. Hall 5398565 YP_001389117.1 CDS CLC_3337 NC_009698.1 3508070 3509011 R identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit complement(3508070..3509011) Clostridium botulinum A str. Hall 5399079 YP_001389118.1 CDS CLC_3338 NC_009698.1 3509011 3509835 R identified by match to protein family HMM PF00456; transketolase complement(3509011..3509835) Clostridium botulinum A str. Hall 5401361 YP_001389119.1 CDS CLC_3339 NC_009698.1 3510098 3510451 R identified by match to protein family HMM PF02452; PemK family protein complement(3510098..3510451) Clostridium botulinum A str. Hall 5398283 YP_001389120.1 CDS CLC_3340 NC_009698.1 3510408 3510731 R hypothetical protein complement(3510408..3510731) Clostridium botulinum A str. Hall 5401499 YP_001389121.1 CDS alr NC_009698.1 3510870 3512030 R converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase complement(3510870..3512030) Clostridium botulinum A str. Hall 5401733 YP_001389122.1 CDS CLC_3342 NC_009698.1 3512058 3512672 R hypothetical protein complement(3512058..3512672) Clostridium botulinum A str. Hall 5401644 YP_001389123.1 CDS CLC_3343 NC_009698.1 3512872 3514374 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase complement(3512872..3514374) Clostridium botulinum A str. Hall 5401058 YP_001389124.1 CDS acpS NC_009698.1 3514371 3514751 R identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier-protein) synthase complement(3514371..3514751) Clostridium botulinum A str. Hall 5400539 YP_001389127.1 CDS CLC_3347 NC_009698.1 3515624 3516949 R identified by match to protein family HMM PF03553; match to protein family HMM PF06808; Na+/H+ antiporter family protein complement(3515624..3516949) Clostridium botulinum A str. Hall 5398882 YP_001389128.1 CDS CLC_3348 NC_009698.1 3517254 3518111 R identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein complement(3517254..3518111) Clostridium botulinum A str. Hall 5399889 YP_001389129.1 CDS CLC_3349 NC_009698.1 3518271 3518930 R hypothetical protein complement(3518271..3518930) Clostridium botulinum A str. Hall 5399067 YP_001389130.1 CDS rpsD-1 NC_009698.1 3519183 3519776 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3519183..3519776) Clostridium botulinum A str. Hall 5400196 YP_001389131.1 CDS CLC_3351 NC_009698.1 3520222 3521397 D identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 3520222..3521397 Clostridium botulinum A str. Hall 5400507 YP_001389132.1 CDS CLC_3352 NC_009698.1 3521580 3522173 R identified by match to protein family HMM PF01569; PAP2 family protein complement(3521580..3522173) Clostridium botulinum A str. Hall 5400598 YP_001389133.1 CDS CLC_3354 NC_009698.1 3523242 3523724 D hypothetical protein 3523242..3523724 Clostridium botulinum A str. Hall 5398946 YP_001389134.1 CDS glmS NC_009698.1 3523930 3525756 R identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase complement(3523930..3525756) Clostridium botulinum A str. Hall 5400779 YP_001389135.1 CDS CLC_3356 NC_009698.1 3526359 3527036 R identified by match to protein family HMM PF00923; transaldolase complement(3526359..3527036) Clostridium botulinum A str. Hall 5398753 YP_001389136.1 CDS CLC_3357 NC_009698.1 3527055 3527702 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; haloacid dehalogenase complement(3527055..3527702) Clostridium botulinum A str. Hall 5401053 YP_001389137.1 CDS srlD NC_009698.1 3527726 3528511 R catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase complement(3527726..3528511) Clostridium botulinum A str. Hall 5399122 YP_001389138.1 CDS CLC_3359 NC_009698.1 3528531 3528896 R identified by match to protein family HMM PF03829; PTS system glucitol/sorbitol-specific transporter subunit IIA complement(3528531..3528896) Clostridium botulinum A str. Hall 5398960 YP_001389139.1 CDS CLC_3360 NC_009698.1 3529112 3530116 R identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; PTS system glucitol/sorbitol-specific transporter subunit IIBC complement(3529112..3530116) Clostridium botulinum A str. Hall 5399616 YP_001389140.1 CDS CLC_3361 NC_009698.1 3530129 3530674 R identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; PTS system glucitol/sorbitol-specific transporter subunit IIC complement(3530129..3530674) Clostridium botulinum A str. Hall 5399458 YP_001389141.1 CDS gutM NC_009698.1 3530717 3531112 R identified by match to protein family HMM PF06923; glucitol operon activator protein complement(3530717..3531112) Clostridium botulinum A str. Hall 5400878 YP_001389142.1 CDS CLC_3363 NC_009698.1 3531126 3532175 R identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-iditol 2-dehydrogenase complement(3531126..3532175) Clostridium botulinum A str. Hall 5401044 YP_001389143.1 CDS CLC_3364 NC_009698.1 3532210 3533181 R identified by match to protein family HMM PF04198; glucitol operon regulator complement(3532210..3533181) Clostridium botulinum A str. Hall 5401295 YP_001389144.1 CDS glmM NC_009698.1 3533536 3534885 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3533536..3534885) Clostridium botulinum A str. Hall 5399752 YP_008472700.1 CDS CLC_3366A NC_009698.1 3535020 3535550 R 2-oxoglutarate ferredoxin oxidoreductase subunit gamma complement(3535020..3535550) Clostridium botulinum A str. Hall 16691482 YP_008472701.1 CDS CLC_3366B NC_009698.1 3535552 3536301 R 2-oxoglutarate oxidoreductase complement(3535552..3536301) Clostridium botulinum A str. Hall 16691473 YP_001389145.1 CDS CLC_3367 NC_009698.1 3536301 3537371 R catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase complement(3536301..3537371) Clostridium botulinum A str. Hall 5400580 YP_001389146.1 CDS CLC_3368 NC_009698.1 3537387 3537596 R identified by match to protein family HMM PF00037; 2-oxoacid:acceptor oxidoreductase subunit delta complement(3537387..3537596) Clostridium botulinum A str. Hall 5400319 YP_001389147.1 CDS CLC_3369 NC_009698.1 3537698 3538360 R hypothetical protein complement(3537698..3538360) Clostridium botulinum A str. Hall 5400338 YP_001389148.1 CDS buk-1 NC_009698.1 3538623 3539693 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(3538623..3539693) Clostridium botulinum A str. Hall 5398837 YP_001389149.1 CDS ptb NC_009698.1 3539722 3540633 R catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase complement(3539722..3540633) Clostridium botulinum A str. Hall 5399849 YP_001389150.1 CDS buk-2 NC_009698.1 3540626 3541720 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(3540626..3541720) Clostridium botulinum A str. Hall 5401705 YP_001389151.1 CDS CLC_3373 NC_009698.1 3541821 3543419 R oxidoreductase, FAD-binding complement(3541821..3543419) Clostridium botulinum A str. Hall 5401222 YP_001389152.1 CDS CLC_3374 NC_009698.1 3543421 3544701 R identified by match to protein family HMM PF07949; hypothetical protein complement(3543421..3544701) Clostridium botulinum A str. Hall 5400642 YP_001389153.1 CDS CLC_3375 NC_009698.1 3544671 3545519 R identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein complement(3544671..3545519) Clostridium botulinum A str. Hall 5399282 YP_001389154.1 CDS CLC_3376 NC_009698.1 3545774 3546307 D identified by match to protein family HMM PF07486; cell wall hydrolase 3545774..3546307 Clostridium botulinum A str. Hall 5399572 YP_001389155.1 CDS CLC_3377 NC_009698.1 3546699 3547562 R identified by match to protein family HMM PF01134; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase complement(3546699..3547562) Clostridium botulinum A str. Hall 5398303 YP_001389156.1 CDS trx NC_009698.1 3547628 3547945 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(3547628..3547945) Clostridium botulinum A str. Hall 5398792 YP_001389157.1 CDS iadA NC_009698.1 3548054 3549229 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase complement(3548054..3549229) Clostridium botulinum A str. Hall 5400819 YP_001389158.1 CDS CLC_3380 NC_009698.1 3549304 3550557 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(3549304..3550557) Clostridium botulinum A str. Hall 5401632 YP_001389159.1 CDS CLC_3381 NC_009698.1 3550585 3551325 R lipoprotein complement(3550585..3551325) Clostridium botulinum A str. Hall 5400736 YP_001389160.1 CDS ptsI NC_009698.1 3551428 3553047 R identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(3551428..3553047) Clostridium botulinum A str. Hall 5399105 YP_001389161.1 CDS CLC_3383 NC_009698.1 3553365 3555374 D identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator 3553365..3555374 Clostridium botulinum A str. Hall 5400647 YP_001389162.1 CDS CLC_3384 NC_009698.1 3555511 3556218 R identified by match to protein family HMM PF00515; hypothetical protein complement(3555511..3556218) Clostridium botulinum A str. Hall 5401771 YP_001389163.1 CDS CLC_3385 NC_009698.1 3556288 3556842 R identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta complement(3556288..3556842) Clostridium botulinum A str. Hall 5399471 YP_001389164.1 CDS CLC_3386 NC_009698.1 3556943 3557785 R Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase complement(3556943..3557785) Clostridium botulinum A str. Hall 5398713 YP_001389165.1 CDS CLC_3387 NC_009698.1 3557926 3558630 R identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883; N-acetylmuramoyl-L-alanine amidase complement(3557926..3558630) Clostridium botulinum A str. Hall 5401172 YP_001389166.1 CDS CLC_3388 NC_009698.1 3558896 3560512 R identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein complement(3558896..3560512) Clostridium botulinum A str. Hall 5400831 YP_001389167.1 CDS rpsI NC_009698.1 3560818 3561210 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(3560818..3561210) Clostridium botulinum A str. Hall 5400410 YP_001389168.1 CDS rplM NC_009698.1 3561236 3561670 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(3561236..3561670) Clostridium botulinum A str. Hall 5399674 YP_001389169.1 CDS truA NC_009698.1 3561794 3562534 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(3561794..3562534) Clostridium botulinum A str. Hall 5398903 YP_001389170.1 CDS CLC_3392 NC_009698.1 3562534 3563337 R identified by match to protein family HMM PF02361; cobalt ABC transporter permease complement(3562534..3563337) Clostridium botulinum A str. Hall 5398548 YP_001389171.1 CDS cbiO NC_009698.1 3563334 3564200 R with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(3563334..3564200) Clostridium botulinum A str. Hall 5400086 YP_001389172.1 CDS CLC_3394 NC_009698.1 3564185 3565033 R with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit complement(3564185..3565033) Clostridium botulinum A str. Hall 5400680 YP_001389173.1 CDS rplQ NC_009698.1 3565124 3565465 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(3565124..3565465) Clostridium botulinum A str. Hall 5399634 YP_001389174.1 CDS rpoA NC_009698.1 3565509 3566456 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(3565509..3566456) Clostridium botulinum A str. Hall 5400901 YP_001389175.1 CDS rpsD NC_009698.1 3566524 3567144 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(3566524..3567144) Clostridium botulinum A str. Hall 5401658 YP_001389176.1 CDS rpsK NC_009698.1 3567179 3567577 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(3567179..3567577) Clostridium botulinum A str. Hall 5399769 YP_001389177.1 CDS rpsM NC_009698.1 3567595 3567966 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(3567595..3567966) Clostridium botulinum A str. Hall 5398230 YP_001389178.1 CDS rpmJ NC_009698.1 3568079 3568192 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(3568079..3568192) Clostridium botulinum A str. Hall 5400708 YP_001389179.1 CDS infA NC_009698.1 3568209 3568427 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(3568209..3568427) Clostridium botulinum A str. Hall 5401099 YP_001389180.1 CDS CLC_3402 NC_009698.1 3568435 3568716 R hypothetical protein complement(3568435..3568716) Clostridium botulinum A str. Hall 5401314 YP_001389181.1 CDS map-1 NC_009698.1 3568731 3569480 R identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(3568731..3569480) Clostridium botulinum A str. Hall 5398790 YP_001389182.1 CDS adk NC_009698.1 3569480 3570130 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(3569480..3570130) Clostridium botulinum A str. Hall 5400834 YP_001389183.1 CDS secY NC_009698.1 3570154 3571431 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(3570154..3571431) Clostridium botulinum A str. Hall 5401196 YP_001389184.1 CDS rplO NC_009698.1 3571432 3571872 R late assembly protein; 50S ribosomal protein L15 complement(3571432..3571872) Clostridium botulinum A str. Hall 5398242 YP_001389185.1 CDS rpmD NC_009698.1 3571892 3572071 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(3571892..3572071) Clostridium botulinum A str. Hall 5399301 YP_001389186.1 CDS rpsE NC_009698.1 3572085 3572582 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(3572085..3572582) Clostridium botulinum A str. Hall 5400456 YP_001389187.1 CDS rplR NC_009698.1 3572600 3572959 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(3572600..3572959) Clostridium botulinum A str. Hall 5399743 YP_001389188.1 CDS rplF NC_009698.1 3572978 3573520 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(3572978..3573520) Clostridium botulinum A str. Hall 5400460 YP_001389189.1 CDS rpsH NC_009698.1 3573544 3573942 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(3573544..3573942) Clostridium botulinum A str. Hall 5401017 YP_001389190.1 CDS rpsN NC_009698.1 3573972 3574157 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(3573972..3574157) Clostridium botulinum A str. Hall 5401682 YP_001389191.1 CDS rplE NC_009698.1 3574174 3574716 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(3574174..3574716) Clostridium botulinum A str. Hall 5398316 YP_001389192.1 CDS rplX NC_009698.1 3574739 3575056 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(3574739..3575056) Clostridium botulinum A str. Hall 5398659 YP_001389193.1 CDS rplN NC_009698.1 3575080 3575448 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(3575080..3575448) Clostridium botulinum A str. Hall 5400830 YP_001389194.1 CDS rpsQ NC_009698.1 3575483 3575737 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(3575483..3575737) Clostridium botulinum A str. Hall 5398889 YP_001389195.1 CDS rpmC NC_009698.1 3575759 3575971 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(3575759..3575971) Clostridium botulinum A str. Hall 5399220 YP_001389196.1 CDS rplP NC_009698.1 3575961 3576404 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(3575961..3576404) Clostridium botulinum A str. Hall 5398278 YP_001389197.1 CDS rpsC NC_009698.1 3576422 3577093 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(3576422..3577093) Clostridium botulinum A str. Hall 5398471 YP_001389198.1 CDS rplV NC_009698.1 3577111 3577446 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3577111..3577446) Clostridium botulinum A str. Hall 5401521 YP_001389199.1 CDS rpsS NC_009698.1 3577468 3577752 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(3577468..3577752) Clostridium botulinum A str. Hall 5400389 YP_001389200.1 CDS rplB NC_009698.1 3577822 3578655 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3577822..3578655) Clostridium botulinum A str. Hall 5400013 YP_001389201.1 CDS rplW NC_009698.1 3578710 3579003 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(3578710..3579003) Clostridium botulinum A str. Hall 5400688 YP_001389202.1 CDS rplD NC_009698.1 3579003 3579623 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3579003..3579623) Clostridium botulinum A str. Hall 5400181 YP_001389203.1 CDS rplC NC_009698.1 3579648 3580277 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(3579648..3580277) Clostridium botulinum A str. Hall 5399375 YP_001389204.1 CDS rpsJ NC_009698.1 3580367 3580675 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(3580367..3580675) Clostridium botulinum A str. Hall 5400740 YP_001389205.1 CDS tuf-1 NC_009698.1 3581072 3582265 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3581072..3582265) Clostridium botulinum A str. Hall 5401647 YP_001389206.1 CDS fusA-1 NC_009698.1 3582305 3584374 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3582305..3584374) Clostridium botulinum A str. Hall 5398496 YP_001389207.1 CDS rpsG NC_009698.1 3584440 3584910 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3584440..3584910) Clostridium botulinum A str. Hall 5401748 YP_001389208.1 CDS rpsL NC_009698.1 3585071 3585448 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3585071..3585448) Clostridium botulinum A str. Hall 5398508 YP_001389209.1 CDS CLC_3431 NC_009698.1 3585524 3585763 R identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein complement(3585524..3585763) Clostridium botulinum A str. Hall 5398333 YP_001389210.1 CDS rpoC NC_009698.1 3585888 3589424 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(3585888..3589424) Clostridium botulinum A str. Hall 5401448 YP_001389211.1 CDS rpoB NC_009698.1 3589445 3593143 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3589445..3593143) Clostridium botulinum A str. Hall 5400527 YP_001389212.1 CDS rplL NC_009698.1 3593408 3593779 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(3593408..3593779) Clostridium botulinum A str. Hall 5398802 YP_001389213.1 CDS rplJ NC_009698.1 3593826 3594326 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(3593826..3594326) Clostridium botulinum A str. Hall 5398518 YP_001389214.1 CDS rplA NC_009698.1 3594528 3595217 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3594528..3595217) Clostridium botulinum A str. Hall 5399070 YP_001389215.1 CDS rplK NC_009698.1 3595274 3595699 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(3595274..3595699) Clostridium botulinum A str. Hall 5399146 YP_001389216.1 CDS nusG NC_009698.1 3595770 3596294 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(3595770..3596294) Clostridium botulinum A str. Hall 5401486 YP_001389217.1 CDS secE NC_009698.1 3596341 3596568 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(3596341..3596568) Clostridium botulinum A str. Hall 5400147 YP_001389218.1 CDS rpmG NC_009698.1 3596618 3596767 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(3596618..3596767) Clostridium botulinum A str. Hall 5399420 YP_001389219.1 CDS tuf-2 NC_009698.1 3596969 3598162 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3596969..3598162) Clostridium botulinum A str. Hall 5401095 YP_001389220.1 CDS sigH NC_009698.1 3598478 3599119 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 complement(3598478..3599119) Clostridium botulinum A str. Hall 5399964 YP_001389221.1 CDS CLC_3446 NC_009698.1 3599193 3599702 R identified by match to protein family HMM PF05991; hypothetical protein complement(3599193..3599702) Clostridium botulinum A str. Hall 5398642 YP_001389222.1 CDS CLC_3447 NC_009698.1 3599705 3600478 R identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase complement(3599705..3600478) Clostridium botulinum A str. Hall 5400891 YP_001389223.1 CDS thyX NC_009698.1 3600481 3601233 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(3600481..3601233) Clostridium botulinum A str. Hall 5401706 YP_001389224.1 CDS CLC_3449 NC_009698.1 3601223 3601663 R identified by match to protein family HMM PF00636; RNase3 domain-containing protein complement(3601223..3601663) Clostridium botulinum A str. Hall 5398739 YP_001389225.1 CDS cysS NC_009698.1 3601712 3603109 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(3601712..3603109) Clostridium botulinum A str. Hall 5401552 YP_001389226.1 CDS ilvA NC_009698.1 3603138 3604355 R identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127; threonine dehydratase complement(3603138..3604355) Clostridium botulinum A str. Hall 5399538 YP_001389227.1 CDS CLC_3452 NC_009698.1 3604427 3606064 R identified by match to protein family HMM PF03129; match to protein family HMM PF04073; prolyl-tRNA synthetase complement(3604427..3606064) Clostridium botulinum A str. Hall 5401347 YP_001389228.1 CDS ispD NC_009698.1 3606175 3606864 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(3606175..3606864) Clostridium botulinum A str. Hall 5401737 YP_001389229.1 CDS CLC_3454 NC_009698.1 3606866 3607966 R identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein complement(3606866..3607966) Clostridium botulinum A str. Hall 5401042 YP_001389230.1 CDS CLC_3455 NC_009698.1 3608371 3608769 D hypothetical protein 3608371..3608769 Clostridium botulinum A str. Hall 5399312 YP_001389231.1 CDS CLC_3456 NC_009698.1 3608801 3609862 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(3608801..3609862) Clostridium botulinum A str. Hall 5399170 YP_001389232.1 CDS radA NC_009698.1 3609881 3611239 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(3609881..3611239) Clostridium botulinum A str. Hall 5399755 YP_001389233.1 CDS clpC NC_009698.1 3611359 3613794 R identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence MecB/ClpC complement(3611359..3613794) Clostridium botulinum A str. Hall 5398415 YP_001389234.1 CDS CLC_3459 NC_009698.1 3613796 3614839 R identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase complement(3613796..3614839) Clostridium botulinum A str. Hall 5398950 YP_001389235.1 CDS CLC_3460 NC_009698.1 3614844 3615371 R identified by match to protein family HMM PF02151; UVR domain-containing protein complement(3614844..3615371) Clostridium botulinum A str. Hall 5398929 YP_001389236.1 CDS ctsR NC_009698.1 3615394 3615858 R identified by match to protein family HMM PF05848; transciptional repressor CtsR complement(3615394..3615858) Clostridium botulinum A str. Hall 5399877 YP_001389237.1 CDS CLC_3462 NC_009698.1 3616254 3616484 R hypothetical protein complement(3616254..3616484) Clostridium botulinum A str. Hall 5400770 YP_001389238.1 CDS fusA-2 NC_009698.1 3616831 3618903 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3616831..3618903) Clostridium botulinum A str. Hall 5401680 YP_001389239.1 CDS murD NC_009698.1 3629919 3631295 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3629919..3631295) Clostridium botulinum A str. Hall 5401528 YP_001389240.1 CDS glyS NC_009698.1 3632121 3633512 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(3632121..3633512) Clostridium botulinum A str. Hall 5401527 YP_001389241.1 CDS lysS NC_009698.1 3633832 3635346 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3633832..3635346) Clostridium botulinum A str. Hall 5399625 YP_001389242.1 CDS greA NC_009698.1 3635365 3635847 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(3635365..3635847) Clostridium botulinum A str. Hall 5401310 YP_001389243.1 CDS CLC_3484 NC_009698.1 3635978 3636805 R hypothetical protein complement(3635978..3636805) Clostridium botulinum A str. Hall 5399110 YP_001389244.1 CDS CLC_3485 NC_009698.1 3636855 3637826 R identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase complement(3636855..3637826) Clostridium botulinum A str. Hall 5400764 YP_001389245.1 CDS CLC_3486 NC_009698.1 3637836 3638612 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(3637836..3638612) Clostridium botulinum A str. Hall 5401492 YP_001389246.1 CDS fhs NC_009698.1 3638767 3640440 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(3638767..3640440) Clostridium botulinum A str. Hall 5400453 YP_001389247.1 CDS ftsH-2 NC_009698.1 3640643 3642448 R identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH complement(3640643..3642448) Clostridium botulinum A str. Hall 5401272 YP_001389248.1 CDS hpt-2 NC_009698.1 3642530 3643075 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase complement(3642530..3643075) Clostridium botulinum A str. Hall 5399984 YP_001389249.1 CDS tilS NC_009698.1 3643059 3644465 R identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase complement(3643059..3644465) Clostridium botulinum A str. Hall 5399480 YP_001389250.1 CDS spoIIE NC_009698.1 3644614 3647001 R identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865; stage II sporulation protein E complement(3644614..3647001) Clostridium botulinum A str. Hall 5400434 YP_001389251.1 CDS CLC_3507 NC_009698.1 3648265 3648669 R identified by match to protein family HMM PF00575; hypothetical protein complement(3648265..3648669) Clostridium botulinum A str. Hall 5398632 YP_001389252.1 CDS CLC_3508 NC_009698.1 3648731 3649000 R identified by match to protein family HMM PF04977; cell division protein FtsL complement(3648731..3649000) Clostridium botulinum A str. Hall 5399286 YP_001389253.1 CDS CLC_3509 NC_009698.1 3649095 3649493 R identified by match to protein family HMM TIGR02893; hypothetical protein complement(3649095..3649493) Clostridium botulinum A str. Hall 5399161 YP_001389254.1 CDS yabP NC_009698.1 3649508 3649798 R identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892; sporulation protein YabP complement(3649508..3649798) Clostridium botulinum A str. Hall 5398939 YP_001389255.1 CDS CLC_3511 NC_009698.1 3649918 3650157 R identified by match to protein family HMM PF01479; S4 domain-containing protein complement(3649918..3650157) Clostridium botulinum A str. Hall 5401569 YP_001389256.1 CDS hup NC_009698.1 3650231 3650509 R identified by match to protein family HMM PF00216; DNA-binding protein HU complement(3650231..3650509) Clostridium botulinum A str. Hall 5399434 YP_001389257.1 CDS CLC_3513 NC_009698.1 3650637 3652082 R identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein complement(3650637..3652082) Clostridium botulinum A str. Hall 5401591 YP_001389258.1 CDS spoVB-2 NC_009698.1 3652097 3653632 R identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B complement(3652097..3653632) Clostridium botulinum A str. Hall 5400737 YP_001389259.1 CDS CLC_3515 NC_009698.1 3653765 3654316 R identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851; stage V sporulation protein T complement(3653765..3654316) Clostridium botulinum A str. Hall 5399304 YP_001389260.1 CDS prsA NC_009698.1 3654515 3655525 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase complement(3654515..3655525) Clostridium botulinum A str. Hall 5400827 YP_001389261.1 CDS mfd NC_009698.1 3655609 3659115 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(3655609..3659115) Clostridium botulinum A str. Hall 5399555 YP_001389262.1 CDS pth NC_009698.1 3659143 3659712 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(3659143..3659712) Clostridium botulinum A str. Hall 5399037 YP_001389263.1 CDS CLC_3519 NC_009698.1 3659822 3660994 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; protease complement(3659822..3660994) Clostridium botulinum A str. Hall 5400305 YP_001389264.1 CDS CLC_3520 NC_009698.1 3661029 3662438 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(3661029..3662438) Clostridium botulinum A str. Hall 5400257 YP_001389265.1 CDS CLC_3521 NC_009698.1 3662439 3663125 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(3662439..3663125) Clostridium botulinum A str. Hall 5399700 YP_001389266.1 CDS prs NC_009698.1 3663305 3664264 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(3663305..3664264) Clostridium botulinum A str. Hall 5399260 YP_001389267.1 CDS glmU NC_009698.1 3664285 3665658 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(3664285..3665658) Clostridium botulinum A str. Hall 5399224 YP_001389268.1 CDS spoVG NC_009698.1 3665820 3666107 R stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG complement(3665820..3666107) Clostridium botulinum A str. Hall 5398429 YP_001389269.1 CDS purR NC_009698.1 3666210 3667025 R identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor complement(3666210..3667025) Clostridium botulinum A str. Hall 5400892 YP_001389270.1 CDS murC NC_009698.1 3667225 3668601 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3667225..3668601 Clostridium botulinum A str. Hall 5400532 YP_001389271.1 CDS CLC_3527 NC_009698.1 3668666 3668974 D hypothetical protein 3668666..3668974 Clostridium botulinum A str. Hall 5401387 YP_001389272.1 CDS CLC_3530 NC_009698.1 3669220 3670569 D identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 3669220..3670569 Clostridium botulinum A str. Hall 5399331 YP_001389273.1 CDS CLC_3531 NC_009698.1 3670655 3671299 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; haloacid dehalogenase 3670655..3671299 Clostridium botulinum A str. Hall 5401066 YP_001389274.1 CDS CLC_3532 NC_009698.1 3671574 3671972 D hypothetical protein 3671574..3671972 Clostridium botulinum A str. Hall 5398948 YP_001389275.1 CDS CLC_3533 NC_009698.1 3672039 3672758 R catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase complement(3672039..3672758) Clostridium botulinum A str. Hall 5399856 YP_001389276.1 CDS CLC_3534 NC_009698.1 3672803 3673735 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein complement(3672803..3673735) Clostridium botulinum A str. Hall 5401154 YP_001389277.1 CDS CLC_3535 NC_009698.1 3673803 3674939 R phage head-tail adaptor complement(3673803..3674939) Clostridium botulinum A str. Hall 5399482 YP_001389278.1 CDS CLC_3536 NC_009698.1 3675079 3676125 D hypothetical protein 3675079..3676125 Clostridium botulinum A str. Hall 5400872 YP_001389279.1 CDS CLC_3537 NC_009698.1 3676158 3677054 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3676158..3677054 Clostridium botulinum A str. Hall 5400807 YP_001389280.1 CDS CLC_3538 NC_009698.1 3677197 3678993 R identified by match to protein family HMM PF00015; match to protein family HMM PF07700; methyl-accepting chemotaxis protein complement(3677197..3678993) Clostridium botulinum A str. Hall 5400852 YP_001389281.1 CDS CLC_3539 NC_009698.1 3679296 3679958 R identified by match to protein family HMM PF01381; DNA-binding protein complement(3679296..3679958) Clostridium botulinum A str. Hall 5400725 YP_001389282.1 CDS CLC_3540 NC_009698.1 3679973 3680347 R hypothetical protein complement(3679973..3680347) Clostridium botulinum A str. Hall 5400198 YP_001389283.1 CDS CLC_3541 NC_009698.1 3680365 3680883 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(3680365..3680883) Clostridium botulinum A str. Hall 5400269 YP_001389284.1 CDS murI NC_009698.1 3681030 3681803 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(3681030..3681803) Clostridium botulinum A str. Hall 5398350 YP_001389285.1 CDS CLC_3543 NC_009698.1 3681996 3683894 D identified by match to protein family HMM PF00120; glutamine synthetase 3681996..3683894 Clostridium botulinum A str. Hall 5398311 YP_001389286.1 CDS CLC_3544 NC_009698.1 3683939 3684487 R hypothetical protein complement(3683939..3684487) Clostridium botulinum A str. Hall 5401708 YP_001389287.1 CDS murA-2 NC_009698.1 3684883 3686136 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3684883..3686136 Clostridium botulinum A str. Hall 5400883 YP_001389288.1 CDS CLC_3546 NC_009698.1 3686162 3686947 D identified by match to protein family HMM PF00753; metallo-beta-lactamase 3686162..3686947 Clostridium botulinum A str. Hall 5400639 YP_001389289.1 CDS CLC_3547 NC_009698.1 3686964 3687533 D lipoprotein 3686964..3687533 Clostridium botulinum A str. Hall 5399868 YP_001389290.1 CDS CLC_3548 NC_009698.1 3687548 3688051 D identified by match to protein family HMM PF02810; hypothetical protein 3687548..3688051 Clostridium botulinum A str. Hall 5398663 YP_001389291.1 CDS CLC_3549 NC_009698.1 3688230 3688709 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3688230..3688709 Clostridium botulinum A str. Hall 5400561 YP_001389292.1 CDS CLC_3551 NC_009698.1 3689528 3690754 R identified by match to protein family HMM PF07690; major facilitator family protein complement(3689528..3690754) Clostridium botulinum A str. Hall 5399310 YP_001389293.1 CDS CLC_3552 NC_009698.1 3690790 3691425 R identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase complement(3690790..3691425) Clostridium botulinum A str. Hall 5401436 YP_001389294.1 CDS CLC_3553 NC_009698.1 3691718 3692290 D identified by match to protein family HMM PF00440; match to protein family HMM PF02796; TetR family transcriptional regulator 3691718..3692290 Clostridium botulinum A str. Hall 5400084 YP_001389295.1 CDS CLC_3554 NC_009698.1 3692537 3692923 D identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3692537..3692923 Clostridium botulinum A str. Hall 5398877 YP_001389296.1 CDS map-2 NC_009698.1 3692955 3693830 D identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase 3692955..3693830 Clostridium botulinum A str. Hall 5398852 YP_001389297.1 CDS CLC_3556 NC_009698.1 3693920 3694459 R identified by match to protein family HMM PF00881; nitroreductase complement(3693920..3694459) Clostridium botulinum A str. Hall 5401686 YP_001389298.1 CDS CLC_3557 NC_009698.1 3695161 3696657 D hypothetical protein 3695161..3696657 Clostridium botulinum A str. Hall 5399541 YP_001389299.1 CDS CLC_3558 NC_009698.1 3696650 3697486 D identified by match to protein family HMM PF00037; match to protein family HMM PF04055; radical SAM domain-containing protein 3696650..3697486 Clostridium botulinum A str. Hall 5401143 YP_001389300.1 CDS CLC_3559 NC_009698.1 3697902 3698153 D hypothetical protein 3697902..3698153 Clostridium botulinum A str. Hall 5399236 YP_001389301.1 CDS CLC_3560 NC_009698.1 3698156 3699202 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 3698156..3699202 Clostridium botulinum A str. Hall 5401435 YP_001389302.1 CDS thiH NC_009698.1 3699203 3700579 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 3699203..3700579 Clostridium botulinum A str. Hall 5399293 YP_001389303.1 CDS CLC_3562 NC_009698.1 3700588 3701787 D identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein 3700588..3701787 Clostridium botulinum A str. Hall 5401237 YP_001389304.1 CDS CLC_3563 NC_009698.1 3702102 3703475 D identified by match to protein family HMM PF00474; sodium:solute symporter family protein 3702102..3703475 Clostridium botulinum A str. Hall 5399599 YP_001389305.1 CDS CLC_3564 NC_009698.1 3703775 3705019 D identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3703775..3705019 Clostridium botulinum A str. Hall 5398368 YP_001389306.1 CDS CLC_3565 NC_009698.1 3705181 3705858 R identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein complement(3705181..3705858) Clostridium botulinum A str. Hall 5401373 YP_001389307.1 CDS CLC_3566 NC_009698.1 3706154 3706639 D identified by match to protein family HMM PF08761; hypothetical protein 3706154..3706639 Clostridium botulinum A str. Hall 5401063 YP_001389308.1 CDS CLC_3567 NC_009698.1 3706746 3707177 D identified by match to protein family HMM PF04657; hypothetical protein 3706746..3707177 Clostridium botulinum A str. Hall 5399226 YP_001389309.1 CDS CLC_3568 NC_009698.1 3707358 3708263 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3707358..3708263 Clostridium botulinum A str. Hall 5398281 YP_001389310.1 CDS CLC_3569 NC_009698.1 3708351 3709547 D identified by match to protein family HMM PF00082; subtilase 3708351..3709547 Clostridium botulinum A str. Hall 5399145 YP_001389311.1 CDS CLC_3570 NC_009698.1 3709582 3710463 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3709582..3710463) Clostridium botulinum A str. Hall 5400554 YP_001389312.1 CDS CLC_3571 NC_009698.1 3710492 3711439 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase complement(3710492..3711439) Clostridium botulinum A str. Hall 5399390 YP_001389313.1 CDS accA NC_009698.1 3711639 3712478 R identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(3711639..3712478) Clostridium botulinum A str. Hall 5400018 YP_001389314.1 CDS accD NC_009698.1 3712525 3713394 R identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(3712525..3713394) Clostridium botulinum A str. Hall 5401602 YP_001389315.1 CDS accC NC_009698.1 3713414 3714760 R identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; biotin carboxylase complement(3713414..3714760) Clostridium botulinum A str. Hall 5401178 YP_001389316.1 CDS fabZ NC_009698.1 3714792 3715226 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(3714792..3715226) Clostridium botulinum A str. Hall 5399410 YP_001389317.1 CDS accB NC_009698.1 3715246 3715722 R identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(3715246..3715722) Clostridium botulinum A str. Hall 5398569 YP_001389318.1 CDS fabF NC_009698.1 3715726 3716964 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(3715726..3716964) Clostridium botulinum A str. Hall 5399841 YP_001389319.1 CDS fabG NC_009698.1 3716984 3717730 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(3716984..3717730) Clostridium botulinum A str. Hall 5401410 YP_001389320.1 CDS fabD NC_009698.1 3717748 3718692 R identified by match to protein family HMM PF00013; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(3717748..3718692) Clostridium botulinum A str. Hall 5398978 YP_001389321.1 CDS CLC_3580 NC_009698.1 3718713 3719639 R identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; 2-nitropropane dioxygenase complement(3718713..3719639) Clostridium botulinum A str. Hall 5400349 YP_001389322.1 CDS acpP-2 NC_009698.1 3719765 3719989 R identified by match to protein family HMM PF00550; acyl carrier protein complement(3719765..3719989) Clostridium botulinum A str. Hall 5398388 YP_001389323.1 CDS fabH NC_009698.1 3720030 3721010 R identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase complement(3720030..3721010) Clostridium botulinum A str. Hall 5401735 YP_001389324.1 CDS CLC_3583 NC_009698.1 3721003 3721479 R identified by match to protein family HMM PF01047; match to protein family HMM PF03965; MarR family transcriptional regulator complement(3721003..3721479) Clostridium botulinum A str. Hall 5399554 YP_001389325.1 CDS CLC_3584 NC_009698.1 3721495 3722553 R identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(3721495..3722553) Clostridium botulinum A str. Hall 5399995 YP_001389326.1 CDS CLC_3585 NC_009698.1 3722650 3723585 R identified by match to protein family HMM PF01551; peptidase complement(3722650..3723585) Clostridium botulinum A str. Hall 5399760 YP_001389327.1 CDS CLC_3586 NC_009698.1 3723766 3724752 D identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 3723766..3724752 Clostridium botulinum A str. Hall 5400480 YP_001389328.1 CDS CLC_3587 NC_009698.1 3724745 3725722 D acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3724745..3725722 Clostridium botulinum A str. Hall 5400393 YP_001389332.1 CDS CLC_3610 NC_009698.1 3726968 3727777 R identified by match to protein family HMM PF03618; hypothetical protein complement(3726968..3727777) Clostridium botulinum A str. Hall 5398898 YP_001389333.1 CDS CLC_3611 NC_009698.1 3727790 3728164 R identified by match to protein family HMM PF02629; CoA-binding protein complement(3727790..3728164) Clostridium botulinum A str. Hall 5401307 YP_001389334.1 CDS CLC_3612 NC_009698.1 3728345 3729574 D identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase 3728345..3729574 Clostridium botulinum A str. Hall 5400551 YP_001389335.1 CDS CLC_3613 NC_009698.1 3729676 3730425 R identified by match to protein family HMM PF01643; acyl-ACP thioesterase complement(3729676..3730425) Clostridium botulinum A str. Hall 5400462 YP_001389336.1 CDS CLC_3614 NC_009698.1 3730528 3730713 R hypothetical protein complement(3730528..3730713) Clostridium botulinum A str. Hall 5398630 YP_001389337.1 CDS purA NC_009698.1 3730839 3732125 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3730839..3732125) Clostridium botulinum A str. Hall 5400815 YP_001389338.1 CDS CLC_3616 NC_009698.1 3732357 3733742 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(3732357..3733742) Clostridium botulinum A str. Hall 5401153 YP_001389339.1 CDS CLC_3617 NC_009698.1 3733908 3734123 R identified by Glimmer3; hypothetical protein complement(3733908..3734123) Clostridium botulinum A str. Hall 5400637 YP_001389340.1 CDS CLC_3618 NC_009698.1 3734316 3736037 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase complement(3734316..3736037) Clostridium botulinum A str. Hall 5401020 YP_001389341.1 CDS dnaB NC_009698.1 3736279 3737616 R unwinds double stranded DNA; replicative DNA helicase complement(3736279..3737616) Clostridium botulinum A str. Hall 5399789 YP_001389342.1 CDS CLC_3620 NC_009698.1 3737647 3739566 R identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903; ATP-dependent protease complement(3737647..3739566) Clostridium botulinum A str. Hall 5400825 YP_001389343.1 CDS rplI NC_009698.1 3739577 3740020 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3739577..3740020) Clostridium botulinum A str. Hall 5400314 YP_001389344.1 CDS CLC_3622 NC_009698.1 3740020 3742005 R identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein complement(3740020..3742005) Clostridium botulinum A str. Hall 5398336 YP_001389345.1 CDS CLC_3623 NC_009698.1 3742006 3743010 R hypothetical protein complement(3742006..3743010) Clostridium botulinum A str. Hall 5399399 YP_001389346.1 CDS CLC_3624 NC_009698.1 3743022 3743339 R hypothetical protein complement(3743022..3743339) Clostridium botulinum A str. Hall 5400368 YP_001389347.1 CDS rpsR NC_009698.1 3743487 3743729 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3743487..3743729) Clostridium botulinum A str. Hall 5399043 YP_001389348.1 CDS ssb NC_009698.1 3743748 3744194 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(3743748..3744194) Clostridium botulinum A str. Hall 5399174 YP_001389349.1 CDS rpsF NC_009698.1 3744210 3744494 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3744210..3744494) Clostridium botulinum A str. Hall 5398649 YP_001389350.1 CDS CLC_3628 NC_009698.1 3744600 3745748 R identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit complement(3744600..3745748) Clostridium botulinum A str. Hall 5400159 YP_001389351.1 CDS CLC_3629 NC_009698.1 3746022 3746219 R identified by match to protein family HMM PF06107; hypothetical protein complement(3746022..3746219) Clostridium botulinum A str. Hall 5399567 YP_001389352.1 CDS CLC_3630 NC_009698.1 3746235 3747104 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(3746235..3747104) Clostridium botulinum A str. Hall 5399047 YP_001389353.1 CDS CLC_3631 NC_009698.1 3747111 3747356 R hypothetical protein complement(3747111..3747356) Clostridium botulinum A str. Hall 5401531 YP_001389354.1 CDS CLC_3632 NC_009698.1 3747547 3748701 D identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977; cysteine desulfurase 3747547..3748701 Clostridium botulinum A str. Hall 5398382 YP_001389355.1 CDS ytvI NC_009698.1 3748715 3749770 D identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872; sporulation integral membrane protein YtvI 3748715..3749770 Clostridium botulinum A str. Hall 5400119 YP_001389356.1 CDS CLC_3634 NC_009698.1 3749828 3750409 D identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; hypothetical protein 3749828..3750409 Clostridium botulinum A str. Hall 5398727 YP_001389357.1 CDS CLC_3635 NC_009698.1 3750411 3750656 R identified by Glimmer3; hypothetical protein complement(3750411..3750656) Clostridium botulinum A str. Hall 5401761 YP_001389358.1 CDS CLC_3636 NC_009698.1 3750709 3751218 R hypothetical protein complement(3750709..3751218) Clostridium botulinum A str. Hall 5399778 YP_001389359.1 CDS CLC_3637 NC_009698.1 3751256 3752104 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J complement(3751256..3752104) Clostridium botulinum A str. Hall 5401827 YP_001389360.1 CDS soj NC_009698.1 3752120 3752884 R identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj complement(3752120..3752884) Clostridium botulinum A str. Hall 5399506 YP_001389361.1 CDS CLC_3639 NC_009698.1 3753011 3753790 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; parB family protein complement(3753011..3753790) Clostridium botulinum A str. Hall 5401587 YP_001389362.1 CDS gidB NC_009698.1 3753890 3754609 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3753890..3754609) Clostridium botulinum A str. Hall 5399247 YP_001389363.1 CDS gidA-2 NC_009698.1 3754633 3756510 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3754633..3756510) Clostridium botulinum A str. Hall 5401000 YP_001389364.1 CDS trmE NC_009698.1 3756519 3757904 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3756519..3757904) Clostridium botulinum A str. Hall 5399485 YP_001389365.1 CDS jag NC_009698.1 3757952 3758578 R identified by match to protein family HMM PF01424; jag protein complement(3757952..3758578) Clostridium botulinum A str. Hall 5399497 YP_001389366.1 CDS oxaA NC_009698.1 3758596 3759249 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(3758596..3759249) Clostridium botulinum A str. Hall 5400079 YP_001389367.1 CDS CLC_3645 NC_009698.1 3759275 3759484 R identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(3759275..3759484) Clostridium botulinum A str. Hall 5399958 YP_001389368.1 CDS rnpA NC_009698.1 3759481 3759816 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3759481..3759816) Clostridium botulinum A str. Hall 5399118 YP_001389369.1 CDS rpmH NC_009698.1 3759871 3760005 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3759871..3760005) Clostridium botulinum A str. Hall 5401123 CLC_0013 tRNA CLC_0013 NC_009698.1 14122 14198 D tRNA-Met 14122..14198 Clostridium botulinum A str. Hall 5399670 CLC_0015 tRNA CLC_0015 NC_009698.1 14202 14277 D tRNA-Ala 14202..14277 Clostridium botulinum A str. Hall 5399981 CLC_0025 tRNA CLC_0025 NC_009698.1 23913 24003 D tRNA-Ser 23913..24003 Clostridium botulinum A str. Hall 5399147 CLC_0027 tRNA CLC_0027 NC_009698.1 24024 24114 D tRNA-Ser 24024..24114 Clostridium botulinum A str. Hall 5399347 CLC_0029 tRNA CLC_0029 NC_009698.1 24421 24511 D tRNA-Ser 24421..24511 Clostridium botulinum A str. Hall 5399855 CLC_0031 tRNA CLC_0031 NC_009698.1 24532 24622 D tRNA-Ser 24532..24622 Clostridium botulinum A str. Hall 5400090 CLC_0033 tRNA CLC_0033 NC_009698.1 24707 24783 D tRNA-Arg 24707..24783 Clostridium botulinum A str. Hall 5399853 CLC_0045 tRNA CLC_0045 NC_009698.1 33794 33870 D tRNA-Arg 33794..33870 Clostridium botulinum A str. Hall 5400431 CLC_0049 tRNA CLC_0049 NC_009698.1 37631 37720 D tRNA-Ser 37631..37720 Clostridium botulinum A str. Hall 5400280 CLC_0069 tRNA CLC_0069 NC_009698.1 53337 53412 D tRNA-Lys 53337..53412 Clostridium botulinum A str. Hall 5401326 CLC_0077 tRNA CLC_0077 NC_009698.1 59976 60051 D tRNA-Lys 59976..60051 Clostridium botulinum A str. Hall 5401327 CLC_0086 tRNA CLC_0086 NC_009698.1 67842 67917 D tRNA-Phe 67842..67917 Clostridium botulinum A str. Hall 5400730 CLC_0095 tRNA CLC_0095 NC_009698.1 75365 75438 D tRNA-Cys 75365..75438 Clostridium botulinum A str. Hall 5401567 CLC_0214 tRNA CLC_0214 NC_009698.1 192827 192902 D tRNA-Thr 192827..192902 Clostridium botulinum A str. Hall 5399527 CLC_0215 tRNA CLC_0215 NC_009698.1 192908 192992 D tRNA-Tyr 192908..192992 Clostridium botulinum A str. Hall 5399638 CLC_0217 tRNA CLC_0217 NC_009698.1 193006 193081 D tRNA-Val 193006..193081 Clostridium botulinum A str. Hall 5398237 CLC_0219 tRNA CLC_0219 NC_009698.1 193099 193174 D tRNA-Thr 193099..193174 Clostridium botulinum A str. Hall 5399325 CLC_0220 tRNA CLC_0220 NC_009698.1 193180 193264 D tRNA-Tyr 193180..193264 Clostridium botulinum A str. Hall 5400797 CLC_0243 tRNA CLC_0243 NC_009698.1 219969 220043 R tRNA-Gln complement(219969..220043) Clostridium botulinum A str. Hall 5401623 CLC_0472 tRNA CLC_0472 NC_009698.1 476008 476083 D tRNA-Ala 476008..476083 Clostridium botulinum A str. Hall 5400621 CLC_0474 tRNA CLC_0474 NC_009698.1 476089 476165 D tRNA-Ile 476089..476165 Clostridium botulinum A str. Hall 5400796 CLC_0479 tRNA CLC_0479 NC_009698.1 479398 479472 D tRNA-Asn 479398..479472 Clostridium botulinum A str. Hall 5399324 CLC_0552 tRNA CLC_0552 NC_009698.1 562337 562411 D tRNA-Glu 562337..562411 Clostridium botulinum A str. Hall 5400006 CLC_2871 tRNA CLC_2871 NC_009698.1 3037768 3037864 R tRNA-Sec complement(3037768..3037864) Clostridium botulinum A str. Hall 5400818 CLC_2908 tRNA CLC_2908 NC_009698.1 3072391 3072475 R tRNA-Leu complement(3072391..3072475) Clostridium botulinum A str. Hall 5400635 CLC_2947 tRNA CLC_2947 NC_009698.1 3104420 3104506 D tRNA-Leu 3104420..3104506 Clostridium botulinum A str. Hall 5401489 CLC_3046 tRNA CLC_3046 NC_009698.1 3218067 3218140 R tRNA-Cys complement(3218067..3218140) Clostridium botulinum A str. Hall 5399559 CLC_3047 tRNA CLC_3047 NC_009698.1 3218150 3218224 R tRNA-Gly complement(3218150..3218224) Clostridium botulinum A str. Hall 5401150 CLC_3049 tRNA CLC_3049 NC_009698.1 3218229 3218304 R tRNA-Phe complement(3218229..3218304) Clostridium botulinum A str. Hall 5401015 CLC_3051 tRNA CLC_3051 NC_009698.1 3218308 3218384 R tRNA-Asp complement(3218308..3218384) Clostridium botulinum A str. Hall 5400623 CLC_3052 tRNA CLC_3052 NC_009698.1 3218390 3218465 R tRNA-Val complement(3218390..3218465) Clostridium botulinum A str. Hall 5399252 CLC_3168 tRNA CLC_3168 NC_009698.1 3335623 3335699 R tRNA-Arg complement(3335623..3335699) Clostridium botulinum A str. Hall 5398764 CLC_3169 tRNA CLC_3169 NC_009698.1 3335725 3335798 R tRNA-Gly complement(3335725..3335798) Clostridium botulinum A str. Hall 5401627 CLC_3171 tRNA CLC_3171 NC_009698.1 3335828 3335903 R tRNA-Pro complement(3335828..3335903) Clostridium botulinum A str. Hall 5401067 CLC_3172 tRNA CLC_3172 NC_009698.1 3335930 3336005 R tRNA-Lys complement(3335930..3336005) Clostridium botulinum A str. Hall 5399348 CLC_3174 tRNA CLC_3174 NC_009698.1 3336011 3336087 R tRNA-Arg complement(3336011..3336087) Clostridium botulinum A str. Hall 5401452 CLC_3175 tRNA CLC_3175 NC_009698.1 3336094 3336167 R tRNA-Gly complement(3336094..3336167) Clostridium botulinum A str. Hall 5399401 CLC_3176 tRNA CLC_3176 NC_009698.1 3336176 3336250 R tRNA-Gly complement(3336176..3336250) Clostridium botulinum A str. Hall 5399251 CLC_3178 tRNA CLC_3178 NC_009698.1 3336317 3336400 R tRNA-Leu complement(3336317..3336400) Clostridium botulinum A str. Hall 5400088 CLC_3180 tRNA CLC_3180 NC_009698.1 3336416 3336491 R tRNA-Lys complement(3336416..3336491) Clostridium botulinum A str. Hall 5401212 CLC_3182 tRNA CLC_3182 NC_009698.1 3336495 3336569 R tRNA-Gln complement(3336495..3336569) Clostridium botulinum A str. Hall 5398633 CLC_3184 tRNA CLC_3184 NC_009698.1 3336574 3336649 R tRNA-His complement(3336574..3336649) Clostridium botulinum A str. Hall 5400844 CLC_3185 tRNA CLC_3185 NC_009698.1 3336665 3336740 R tRNA-Lys complement(3336665..3336740) Clostridium botulinum A str. Hall 5398725 CLC_3187 tRNA CLC_3187 NC_009698.1 3336746 3336822 R tRNA-Arg complement(3336746..3336822) Clostridium botulinum A str. Hall 5401213 CLC_3188 tRNA CLC_3188 NC_009698.1 3336829 3336902 R tRNA-Gly complement(3336829..3336902) Clostridium botulinum A str. Hall 5400374 CLC_3189 tRNA CLC_3189 NC_009698.1 3336911 3336985 R tRNA-Gly complement(3336911..3336985) Clostridium botulinum A str. Hall 5400114 CLC_3191 tRNA CLC_3191 NC_009698.1 3337052 3337135 R tRNA-Leu complement(3337052..3337135) Clostridium botulinum A str. Hall 5401306 CLC_3193 tRNA CLC_3193 NC_009698.1 3337151 3337226 R tRNA-Lys complement(3337151..3337226) Clostridium botulinum A str. Hall 5400575 CLC_3195 tRNA CLC_3195 NC_009698.1 3337230 3337304 R tRNA-Gln complement(3337230..3337304) Clostridium botulinum A str. Hall 5401068 CLC_3197 tRNA CLC_3197 NC_009698.1 3337309 3337384 R tRNA-His complement(3337309..3337384) Clostridium botulinum A str. Hall 5401070 CLC_3199 tRNA CLC_3199 NC_009698.1 3337392 3337468 R tRNA-Arg complement(3337392..3337468) Clostridium botulinum A str. Hall 5399965 CLC_3200 tRNA CLC_3200 NC_009698.1 3337475 3337548 R tRNA-Gly complement(3337475..3337548) Clostridium botulinum A str. Hall 5400846 CLC_3202 tRNA CLC_3202 NC_009698.1 3337556 3337631 R tRNA-Pro complement(3337556..3337631) Clostridium botulinum A str. Hall 5399285 CLC_3260 tRNA CLC_3260 NC_009698.1 3408619 3408694 R tRNA-Trp complement(3408619..3408694) Clostridium botulinum A str. Hall 5399941 CLC_3442 tRNA CLC_3442 NC_009698.1 3598245 3598320 R tRNA-Thr complement(3598245..3598320) Clostridium botulinum A str. Hall 5400317 CLC_3444 tRNA CLC_3444 NC_009698.1 3598339 3598413 R tRNA-Gly complement(3598339..3598413) Clostridium botulinum A str. Hall 5399356 CLC_3465 tRNA CLC_3465 NC_009698.1 3619091 3619165 R tRNA-Asn complement(3619091..3619165) Clostridium botulinum A str. Hall 5398587 CLC_3467 tRNA CLC_3467 NC_009698.1 3619193 3619267 R tRNA-Asn complement(3619193..3619267) Clostridium botulinum A str. Hall 5399637 CLC_3470 tRNA CLC_3470 NC_009698.1 3622459 3622535 R tRNA-Ile complement(3622459..3622535) Clostridium botulinum A str. Hall 5398636 CLC_3473 tRNA CLC_3473 NC_009698.1 3624349 3624424 R tRNA-Ala complement(3624349..3624424) Clostridium botulinum A str. Hall 5400732 CLC_3648 tRNA CLC_3648 NC_009698.1 3624430 3624506 R tRNA-Met complement(3624430..3624506) Clostridium botulinum A str. Hall 5867620 CLC_3493 tRNA CLC_3493 NC_009698.1 3647329 3647405 R tRNA-Met complement(3647329..3647405) Clostridium botulinum A str. Hall 5400397 CLC_3495 tRNA CLC_3495 NC_009698.1 3647416 3647491 R tRNA-Met complement(3647416..3647491) Clostridium botulinum A str. Hall 5399332 CLC_3649 tRNA CLC_3649 NC_009698.1 3647545 3647620 R tRNA-Met complement(3647545..3647620) Clostridium botulinum A str. Hall 5401016 CLC_3498 tRNA CLC_3498 NC_009698.1 3647674 3647749 R tRNA-Met complement(3647674..3647749) Clostridium botulinum A str. Hall 5399982 CLC_3500 tRNA CLC_3500 NC_009698.1 3647754 3647842 R tRNA-Leu complement(3647754..3647842) Clostridium botulinum A str. Hall 5400577 CLC_3502 tRNA CLC_3502 NC_009698.1 3647874 3647950 R tRNA-Met complement(3647874..3647950) Clostridium botulinum A str. Hall 5399854 CLC_3504 tRNA CLC_3504 NC_009698.1 3647955 3648030 R tRNA-Met complement(3647955..3648030) Clostridium botulinum A str. Hall 5399983 CLC_3506 tRNA CLC_3506 NC_009698.1 3648035 3648123 R tRNA-Leu complement(3648035..3648123) Clostridium botulinum A str. Hall 5400622 CLC_3528 tRNA CLC_3528 NC_009698.1 3669052 3669127 D tRNA-Pro 3669052..3669127 Clostridium botulinum A str. Hall 5399408 CLC_3650 tRNA CLC_3650 NC_009698.1 3725813 3725888 R tRNA-Thr complement(3725813..3725888) Clostridium botulinum A str. Hall 5867619 CLC_3651 tRNA CLC_3651 NC_009698.1 3725893 3725969 R tRNA-Asp complement(3725893..3725969) Clostridium botulinum A str. Hall 5867621 CLC_3652 tRNA CLC_3652 NC_009698.1 3725979 3726054 R tRNA-Val complement(3725979..3726054) Clostridium botulinum A str. Hall 5867622 CLC_3653 tRNA CLC_3653 NC_009698.1 3726072 3726146 R tRNA-Glu complement(3726072..3726146) Clostridium botulinum A str. Hall 5867623 CLC_3654 tRNA CLC_3654 NC_009698.1 3726204 3726280 R tRNA-Asp complement(3726204..3726280) Clostridium botulinum A str. Hall 5867624 CLC_3600 tRNA CLC_3600 NC_009698.1 3726288 3726363 R tRNA-Val complement(3726288..3726363) Clostridium botulinum A str. Hall 5400534 CLC_3655 tRNA CLC_3655 NC_009698.1 3726382 3726456 R tRNA-Glu complement(3726382..3726456) Clostridium botulinum A str. Hall 5867625 CLC_3656 tRNA CLC_3656 NC_009698.1 3726462 3726537 R tRNA-Thr complement(3726462..3726537) Clostridium botulinum A str. Hall 5867626 CLC_3657 tRNA CLC_3657 NC_009698.1 3726542 3726618 R tRNA-Asp complement(3726542..3726618) Clostridium botulinum A str. Hall 5867627 CLC_3608 tRNA CLC_3608 NC_009698.1 3726628 3726703 R tRNA-Val complement(3726628..3726703) Clostridium botulinum A str. Hall 5399018 CLC_3609 tRNA CLC_3609 NC_009698.1 3726721 3726795 R tRNA-Glu complement(3726721..3726795) Clostridium botulinum A str. Hall 5399354 CLC_0008 rRNA rrsA NC_009698.1 9282 10783 D 16S ribosomal RNA 9282..10783 Clostridium botulinum A str. Hall 5399263 CLC_0011 rRNA rrlA NC_009698.1 11004 13905 D 23S ribosomal RNA 11004..13905 Clostridium botulinum A str. Hall 5401568 CLC_0012 rRNA rrfA NC_009698.1 13997 14113 D 5S ribosomal RNA 13997..14113 Clostridium botulinum A str. Hall 5401529 CLC_0064 rRNA rrsB NC_009698.1 48468 49969 D 16S ribosomal RNA 48468..49969 Clostridium botulinum A str. Hall 5401255 CLC_0067 rRNA rrlB NC_009698.1 50191 53092 D 23S ribosomal RNA 50191..53092 Clostridium botulinum A str. Hall 5399157 CLC_0068 rRNA rrfB NC_009698.1 53214 53330 D 5S ribosomal RNA 53214..53330 Clostridium botulinum A str. Hall 5401325 CLC_0072 rRNA rrsC NC_009698.1 55096 56597 D 16S ribosomal RNA 55096..56597 Clostridium botulinum A str. Hall 5400373 CLC_0075 rRNA rrlC NC_009698.1 56819 59720 D 23S ribosomal RNA 56819..59720 Clostridium botulinum A str. Hall 5399379 CLC_0076 rRNA rrfC NC_009698.1 59853 59969 D 5S ribosomal RNA 59853..59969 Clostridium botulinum A str. Hall 5401421 CLC_0081 rRNA rrsE NC_009698.1 63041 64542 D 16S ribosomal RNA 63041..64542 Clostridium botulinum A str. Hall 5398462 CLC_0084 rRNA rrlE NC_009698.1 64764 67665 D 23S ribosomal RNA 64764..67665 Clostridium botulinum A str. Hall 5399278 CLC_0085 rRNA rrfE NC_009698.1 67718 67834 D 5S ribosomal RNA 67718..67834 Clostridium botulinum A str. Hall 5401232 CLC_0089 rRNA rrsF NC_009698.1 69323 70824 D 16S ribosomal RNA 69323..70824 Clostridium botulinum A str. Hall 5398238 CLC_0092 rRNA rrlF NC_009698.1 71046 73947 D 23S ribosomal RNA 71046..73947 Clostridium botulinum A str. Hall 5401721 CLC_0093 rRNA rrfF NC_009698.1 74053 74169 D 5S ribosomal RNA 74053..74169 Clostridium botulinum A str. Hall 5398634 CLC_0471 rRNA rrsG NC_009698.1 474363 475864 D 16S ribosomal RNA 474363..475864 Clostridium botulinum A str. Hall 5401460 CLC_0477 rRNA rrlG NC_009698.1 476239 479140 D 23S ribosomal RNA 476239..479140 Clostridium botulinum A str. Hall 5400572 CLC_0478 rRNA rrfG NC_009698.1 479273 479389 D 5S ribosomal RNA 479273..479389 Clostridium botulinum A str. Hall 5401420 CLC_3468 rRNA rrfH NC_009698.1 3619276 3619392 R 5S ribosomal RNA complement(3619276..3619392) Clostridium botulinum A str. Hall 5401148 CLC_3469 rRNA rrlH NC_009698.1 3619485 3622385 R 23S ribosomal RNA complement(3619485..3622385) Clostridium botulinum A str. Hall 5400027 CLC_3471 rRNA rrsH NC_009698.1 3622622 3624123 R 16S ribosomal RNA complement(3622622..3624123) Clostridium botulinum A str. Hall 5401536 CLC_3477 rRNA rrfI NC_009698.1 3624514 3624630 R 5S ribosomal RNA complement(3624514..3624630) Clostridium botulinum A str. Hall 5400798 CLC_3478 rRNA rrlI NC_009698.1 3624724 3627625 R 23S ribosomal RNA complement(3624724..3627625) Clostridium botulinum A str. Hall 5399250 CLC_3479 rRNA rrsI NC_009698.1 3627847 3629348 R 16S ribosomal RNA complement(3627847..3629348) Clostridium botulinum A str. Hall 5401233