-- dump date   	20140619_043144
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001385963.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001385964.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001385965.1	identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988
YP_001385966.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001385968.1	negatively supercoils closed circular double-stranded DNA
YP_001385969.1	negatively supercoils closed circular double-stranded DNA
YP_001385971.1	identified by match to protein family HMM PF02829; match to protein family HMM PF08279
YP_001385972.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04015
YP_001385973.1	identified by match to protein family HMM PF03699
YP_001385974.1	identified by match to protein family HMM PF03734
YP_001385975.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001385976.1	identified by match to protein family HMM PF07892
YP_001385977.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001385979.1	identified by Glimmer3
YP_001385980.1	identified by match to protein family HMM PF00005
YP_001385984.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001385985.1	identified by match to protein family HMM PF01163; match to protein family HMM PF03109
YP_001385987.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001385988.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_001385989.1	identified by match to protein family HMM PF00383
YP_001385990.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001385991.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_001385992.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001385994.1	identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862
YP_001385995.1	Regulatory factor involved in maltose metabolism
YP_001385996.1	identified by match to protein family HMM PF00293
YP_001385998.1	identified by match to protein family HMM PF00037
YP_001386000.1	identified by match to protein family HMM PF00899
YP_001386001.1	identified by match to protein family HMM PF07690
YP_001386002.1	identified by match to protein family HMM PF00583
YP_001386003.1	identified by match to protein family HMM PF03167
YP_001386004.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001386006.1	identified by match to protein family HMM PF00639
YP_001386007.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001386008.1	identified by match to protein family HMM PF02016
YP_001386009.1	identified by match to protein family HMM PF01544
YP_001386012.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_001386014.1	identified by match to protein family HMM PF06153
YP_001386015.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001386016.1	identified by match to protein family HMM PF04468
YP_001386018.1	identified by match to protein family HMM PF00037
YP_001386020.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_001386021.1	identified by match to protein family HMM PF00877
YP_001386022.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_001386023.1	identified by match to protein family HMM PF08876
YP_001386024.1	identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078
YP_001386025.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001386027.1	identified by match to protein family HMM PF01522
YP_001386029.1	identified by match to protein family HMM PF07670
YP_001386030.1	identified by match to protein family HMM PF07670
YP_001386031.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001386032.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_001386033.1	identified by match to protein family HMM PF01047
YP_001386034.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001386035.1	identified by match to protein family HMM PF04286
YP_001386036.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_001386037.1	identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501
YP_001386038.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_001386039.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001386043.1	identified by match to protein family HMM TIGR01730
YP_001386044.1	identified by match to protein family HMM PF00005
YP_001386045.1	identified by match to protein family HMM PF02687
YP_001386047.1	identified by match to protein family HMM PF00037
YP_001386048.1	identified by Glimmer3
YP_001386049.1	identified by Glimmer3
YP_001386050.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001386051.1	identified by match to protein family HMM PF02308
YP_001386052.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001386053.1	identified by match to protein family HMM TIGR02491
YP_001386056.1	identified by match to protein family HMM PF03551
YP_001386058.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001386059.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001386061.1	identified by match to protein family HMM PF00483
YP_001386062.1	identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299
YP_001386063.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268
YP_001386065.1	identified by match to protein family HMM PF04055
YP_001386066.1	identified by match to protein family HMM PF01547
YP_001386067.1	identified by match to protein family HMM PF00534
YP_001386068.1	identified by match to protein family HMM TIGR02906
YP_001386069.1	identified by Glimmer3
YP_001386071.1	identified by match to protein family HMM TIGR02906
YP_001386072.1	identified by match to protein family HMM PF00534
YP_001386073.1	identified by match to protein family HMM TIGR02906
YP_001386074.1	identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855
YP_001386075.1	identified by match to protein family HMM PF06257
YP_001386076.1	identified by match to protein family HMM PF01476
YP_001386077.1	identified by Glimmer3
YP_001386078.1	identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069
YP_001386079.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001386080.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001386081.1	identified by Glimmer3
YP_001386082.1	identified by match to protein family HMM PF03323
YP_001386083.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001386084.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001386085.1	identified by match to protein family HMM TIGR02837
YP_001386086.1	identified by match to protein family HMM PF04101; match to protein family HMM PF06925
YP_001386087.1	identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889
YP_001386088.1	identified by match to protein family HMM PF02568
YP_001386089.1	identified by match to protein family HMM PF09148
YP_001386091.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001386093.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001386094.1	identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105
YP_001386095.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_001386096.1	identified by match to protein family HMM PF07136
YP_001386097.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387
YP_001386098.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001386100.1	identified by match to protein family HMM PF02535
YP_001386101.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_001386102.1	identified by match to protein family HMM PF01451
YP_001386103.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_001386104.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001386105.1	identified by match to protein family HMM PF00383
YP_001386106.1	identified by match to protein family HMM PF00953
YP_001386107.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_001386109.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001386110.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001386111.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel
YP_001386112.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001386113.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001386114.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001386115.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001386116.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001386118.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001386119.1	identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870
YP_001386120.1	identified by match to protein family HMM PF01551
YP_001386121.1	identified by match to protein family HMM TIGR02844
YP_001386122.1	identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_001386123.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_001386124.1	identified by match to protein family HMM PF01171
YP_001386125.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001386126.1	identified by match to protein family HMM TIGR01448
YP_001386128.1	identified by match to protein family HMM PF00156
YP_001386129.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_001386130.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001386131.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_001386132.1	identified by match to protein family HMM PF04389
YP_001386133.1	identified by match to protein family HMM PF00575
YP_001386137.1	identified by match to protein family HMM PF00149
YP_001386138.1	identified by match to protein family HMM PF01022
YP_001386139.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_001386141.1	identified by match to protein family HMM PF04607
YP_001386143.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001386144.1	identified by match to protein family HMM PF00581
YP_001386146.1	identified by match to protein family HMM PF00226; match to protein family HMM PF07719
YP_001386147.1	identified by match to protein family HMM PF01928
YP_001386149.1	identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859
YP_001386151.1	identified by match to protein family HMM PF04239
YP_001386152.1	identified by match to protein family HMM PF00485
YP_001386153.1	identified by Glimmer3
YP_001386154.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_001386155.1	identified by match to protein family HMM PF00571
YP_001386156.1	similar to YegS from E. coli
YP_001386158.1	identified by match to protein family HMM PF04055; match to protein family HMM PF08497
YP_001386159.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239
YP_001386160.1	identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869
YP_001386161.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_001386162.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_001386163.1	identified by match to protein family HMM PF00037; match to protein family HMM PF08331
YP_001386164.1	identified by match to protein family HMM PF01553
YP_001386165.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_001386166.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_001386167.1	identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_001386169.1	identified by match to protein family HMM PF05343
YP_001386170.1	identified by match to protein family HMM PF04294
YP_001386171.1	identified by match to protein family HMM PF04294; match to protein family HMM PF07501
YP_001386172.1	identified by match to protein family HMM PF04055
YP_001386173.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_001386174.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001386175.1	identified by match to protein family HMM PF02608
YP_001386176.1	identified by match to protein family HMM PF00005
YP_001386177.1	identified by match to protein family HMM PF02653
YP_001386178.1	identified by match to protein family HMM PF02653
YP_001386179.1	identified by match to protein family HMM PF01522
YP_001386180.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001386181.1	identified by match to protein family HMM PF04198
YP_001386182.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001386183.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001386184.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001386185.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001386186.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001386187.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_001386188.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_001386189.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001386190.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001386191.1	identified by match to protein family HMM PF00375
YP_001386192.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_001386194.1	identified by Glimmer3
YP_001386195.1	identified by Glimmer3
YP_001386196.1	identified by match to protein family HMM PF00282
YP_001386197.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001386198.1	identified by match to protein family HMM PF01569
YP_001386199.1	identified by match to protein family HMM PF07883
YP_001386201.1	identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949
YP_001386202.1	transports degraded pectin products into the bacterial cell
YP_001386203.1	identified by match to protein family HMM PF02518
YP_001386204.1	identified by match to protein family HMM PF00072
YP_001386205.1	identified by match to protein family HMM PF00324
YP_001386206.1	identified by match to protein family HMM PF00753
YP_001386207.1	identified by match to protein family HMM PF00583
YP_001386208.1	identified by match to protein family HMM PF00383
YP_001386209.1	identified by match to protein family HMM PF00583
YP_001386210.1	identified by match to protein family HMM PF01872
YP_001386211.1	3'-5' exonuclease of DNA polymerase III
YP_001386213.1	identified by match to protein family HMM PF00857
YP_001386214.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_001386215.1	identified by match to protein family HMM PF00941
YP_001386216.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001386217.1	identified by Glimmer3
YP_001386218.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001386219.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386220.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386221.1	identified by match to protein family HMM PF02056
YP_001386222.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_001386223.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001386224.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001386225.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001386226.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386227.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386228.1	identified by match to protein family HMM PF00005
YP_001386229.1	identified by match to protein family HMM PF02687
YP_001386230.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001386231.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_001386232.1	identified by match to protein family HMM PF02056
YP_001386233.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001386234.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001386236.1	identified by match to protein family HMM PF00313
YP_001386237.1	identified by match to protein family HMM PF06210
YP_001386238.1	identified by match to protein family HMM PF02082
YP_001386239.1	identified by match to protein family HMM PF01323
YP_001386241.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001386242.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826
YP_001386243.1	identified by match to protein family HMM PF02056
YP_001386244.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001386245.1	identified by match to protein family HMM PF00920
YP_001386246.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_001386247.1	identified by match to protein family HMM PF00294
YP_001386248.2	identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178
YP_001386249.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386250.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386251.1	identified by match to protein family HMM PF00535
YP_001386252.1	identified by match to protein family HMM PF04138
YP_001386253.1	identified by match to protein family HMM PF02366
YP_001386254.1	identified by match to protein family HMM PF00165
YP_001386255.1	identified by match to protein family HMM PF01497
YP_001386256.1	identified by match to protein family HMM PF01032
YP_001386257.1	identified by match to protein family HMM PF00005
YP_001386258.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001386259.1	identified by match to protein family HMM PF00165
YP_001386260.1	identified by similarity to SP:P37580; match to protein family HMM PF01497
YP_001386261.1	identified by Glimmer3
YP_001386262.1	identified by match to protein family HMM PF00165
YP_001386263.1	identified by match to protein family HMM PF01497
YP_001386264.1	identified by match to protein family HMM PF01032
YP_001386265.1	identified by match to protein family HMM PF01032
YP_001386266.1	identified by match to protein family HMM PF00005
YP_001386267.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001386268.1	identified by match to protein family HMM PF01325
YP_001386269.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001386270.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001386271.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386272.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386273.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001386274.1	identified by match to protein family HMM PF00005
YP_001386275.1	identified by match to protein family HMM PF02687
YP_001386276.1	identified by Glimmer3
YP_001386277.1	identified by match to protein family HMM PF03788
YP_001386278.1	identified by match to protein family HMM PF04172
YP_001386280.1	identified by match to protein family HMM PF04055
YP_001386281.1	identified by match to protein family HMM PF08903
YP_001386284.1	identified by match to protein family HMM PF04647
YP_001386286.1	identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254
YP_001386287.1	identified by match to protein family HMM PF00583
YP_001386289.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001386291.1	identified by match to protein family HMM PF04647
YP_001386292.1	identified by Glimmer3
YP_001386293.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001386294.1	identified by match to protein family HMM PF01171
YP_001386295.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001386296.1	identified by match to protein family HMM PF00324
YP_001386297.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001386298.1	identified by match to protein family HMM PF00171; match to protein family HMM PF00465
YP_001386303.1	identified by match to protein family HMM PF01569
YP_001386304.1	identified by match to protein family HMM PF01522
YP_001386305.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386306.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386308.1	identified by match to protein family HMM PF06962
YP_001386309.1	identified by match to protein family HMM PF09335
YP_001386310.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254
YP_001386312.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001386313.1	identified by match to protein family HMM PF01966
YP_001386314.1	identified by match to protein family HMM PF00999
YP_001386315.1	identified by match to protein family HMM PF00266
YP_001386316.1	identified by match to protein family HMM PF03601
YP_001386318.1	identified by match to protein family HMM PF00486
YP_001386319.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386320.1	identified by match to protein family HMM PF00474
YP_001386321.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945
YP_001386322.1	identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946
YP_001386323.1	identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947
YP_001386324.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001386325.1	identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943
YP_001386326.1	involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate
YP_001386327.1	identified by match to protein family HMM PF04122
YP_001386328.1	identified by match to protein family HMM PF07456
YP_001386329.1	identified by match to protein family HMM PF07009
YP_001386330.1	identified by match to protein family HMM PF02424
YP_001386331.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001386332.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001386333.1	identified by match to protein family HMM PF06803
YP_001386334.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_001386335.1	identified by Glimmer3
YP_001386336.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01381
YP_001386337.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001386339.1	identified by similarity to GB:AAP09991.1
YP_001386340.1	identified by Glimmer3
YP_001386341.1	identified by match to protein family HMM PF01965
YP_001386344.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346
YP_001386345.1	identified by match to protein family HMM PF01037
YP_001386347.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_001386348.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_001386349.1	identified by match to protein family HMM PF00132
YP_001386350.1	identified by match to protein family HMM PF00753
YP_001386351.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517
YP_001386352.1	identified by match to protein family HMM PF02417
YP_001386353.1	identified by match to protein family HMM PF02417
YP_001386354.1	identified by match to protein family HMM PF02452
YP_001386355.1	identified by match to protein family HMM PF03885
YP_001386356.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001386357.1	identified by match to protein family HMM PF01957
YP_001386358.1	identified by match to protein family HMM PF01145
YP_001386359.1	identified by match to protein family HMM PF02517
YP_001386360.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_001386361.1	identified by match to protein family HMM PF07685
YP_001386362.1	identified by match to protein family HMM PF08245; match to protein family HMM PF08353
YP_001386363.1	identified by match to protein family HMM PF01238
YP_001386365.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001386366.1	identified by match to protein family HMM PF00753
YP_001386367.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_001386368.1	identified by match to protein family HMM PF00682
YP_001386369.1	Catalyzes the conversion of citrate to isocitrate
YP_001386370.1	identified by match to protein family HMM PF00180
YP_001386371.1	identified by match to protein family HMM PF00005
YP_001386372.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03606
YP_001386373.1	identified by match to protein family HMM PF04070
YP_001386374.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001386375.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001386376.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001386377.1	identified by match to protein family HMM TIGR02773
YP_001386379.1	identified by match to protein family HMM PF00005
YP_001386380.1	identified by similarity to GB:AAS44016.1
YP_001386382.1	identified by match to protein family HMM PF04055
YP_001386383.1	identified by Glimmer3
YP_001386384.1	identified by Glimmer3
YP_001386385.1	identified by Glimmer3
YP_001386386.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001386387.1	identified by Glimmer3
YP_001386388.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001386390.1	identified by match to protein family HMM PF00440
YP_001386391.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073
YP_001386392.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001386393.1	identified by match to protein family HMM PF01155
YP_001386395.1	identified by Glimmer3
YP_001386396.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785
YP_001386397.1	identified by match to protein family HMM PF00015
YP_001386398.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_001386399.1	identified by match to protein family HMM PF01734
YP_001386400.1	identified by match to protein family HMM PF00753
YP_001386401.1	identified by match to protein family HMM PF00903
YP_001386402.1	identified by Glimmer3
YP_001386403.1	identified by match to protein family HMM PF04122
YP_001386404.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001386405.1	identified by match to protein family HMM PF00497
YP_001386406.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386407.1	identified by match to protein family HMM PF00563; match to protein family HMM PF08668
YP_001386408.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_001386409.1	identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694
YP_001386410.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001386411.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001386412.1	identified by match to protein family HMM PF01094
YP_001386413.1	identified by match to protein family HMM PF02653
YP_001386414.1	identified by match to protein family HMM PF02653
YP_001386415.1	identified by match to protein family HMM PF00005
YP_001386416.1	identified by match to protein family HMM PF00005
YP_001386417.1	identified by match to protein family HMM PF02596
YP_001386419.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001386420.1	identified by match to protein family HMM PF04011
YP_001386421.1	identified by match to protein family HMM PF04536
YP_001386422.1	identified by match to protein family HMM PF04536
YP_001386423.1	identified by match to protein family HMM PF00293
YP_001386424.1	identified by Glimmer3
YP_001386426.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386430.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_001386432.1	identified by match to protein family HMM PF00293
YP_001386433.1	identified by match to protein family HMM PF02588
YP_001386435.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_001386436.1	identified by Glimmer3
YP_001386440.1	identified by match to protein family HMM PF02562
YP_001386443.1	identified by Glimmer3
YP_001386446.1	identified by match to protein family HMM PF02624
YP_001386447.1	identified by match to protein family HMM PF02517
YP_001386449.1	identified by match to protein family HMM PF00005
YP_001386450.1	identified by match to protein family HMM PF01061
YP_001386451.1	identified by match to protein family HMM PF01061
YP_001386452.1	identified by match to protein family HMM PF02163
YP_001386453.1	identified by Glimmer3
YP_001386454.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_001386456.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001386458.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_001386459.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001386460.1	identified by match to protein family HMM PF00072
YP_001386461.1	identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_001386462.1	identified by match to protein family HMM PF00561
YP_001386463.1	identified by match to protein family HMM PF00072
YP_001386464.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001386465.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001386466.1	identified by match to protein family HMM PF00072
YP_001386467.1	identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414
YP_001386468.1	identified by match to protein family HMM PF06733
YP_001386470.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279
YP_001386471.1	identified by match to protein family HMM PF01262
YP_001386472.1	identified by match to protein family HMM PF06874
YP_001386473.1	identified by Glimmer3
YP_001386474.1	identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481
YP_001386475.1	identified by Glimmer3
YP_001386476.1	identified by Glimmer3
YP_001386477.1	identified by match to protein family HMM PF02777
YP_001386478.1	identified by match to protein family HMM PF00753
YP_001386483.1	identified by match to protein family HMM PF01381
YP_001386484.1	identified by match to protein family HMM PF00583
YP_001386485.1	identified by match to protein family HMM PF04324
YP_001386486.1	identified by Glimmer3
YP_001386488.1	identified by Glimmer3
YP_001386489.1	identified by match to protein family HMM PF02554
YP_001386491.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001386492.1	identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220
YP_001386493.1	identified by match to protein family HMM TIGR02357
YP_001386494.1	identified by Glimmer3
YP_001386495.1	identified by match to protein family HMM PF02810
YP_001386496.1	identified by match to protein family HMM PF00392
YP_001386497.1	identified by match to protein family HMM PF00005
YP_001386499.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_001386500.1	identified by match to protein family HMM PF00528
YP_001386501.1	identified by match to protein family HMM PF00528; match to protein family HMM PF01547
YP_001386502.1	identified by match to protein family HMM PF00165
YP_001386503.1	identified by match to protein family HMM PF00375
YP_001386504.1	identified by Glimmer3
YP_001386505.1	identified by match to protein family HMM PF01966
YP_001386507.1	identified by Glimmer3
YP_001386508.1	identified by match to protein family HMM PF02517
YP_001386509.1	identified by match to protein family HMM PF00805
YP_001386510.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001386512.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001386513.1	identified by Glimmer3
YP_001386514.1	identified by Glimmer3
YP_001386515.1	identified by Glimmer3
YP_001386516.1	identified by match to protein family HMM PF04055
YP_001386517.1	identified by Glimmer3
YP_001386519.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463
YP_001386521.1	identified by match to protein family HMM PF00583
YP_001386522.1	identified by match to protein family HMM PF02687
YP_001386523.1	identified by match to protein family HMM PF00005
YP_001386525.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001386528.1	identified by match to protein family HMM PF00884
YP_001386529.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001386530.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_001386531.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001386532.1	identified by similarity to GB:BAD62756.1; match to protein family HMM PF03551
YP_001386534.1	identified by match to protein family HMM PF04397
YP_001386536.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001386537.1	identified by match to protein family HMM PF02517
YP_001386538.1	identified by match to protein family HMM PF01381
YP_001386541.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386544.1	identified by match to protein family HMM PF02557
YP_001386545.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386546.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386548.1	identified by match to protein family HMM PF00072
YP_001386549.1	identified by match to protein family HMM PF02518
YP_001386550.1	identified by match to protein family HMM PF01098
YP_001386551.1	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386552.1	identified by Glimmer3
YP_001386553.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001386554.1	identified by match to protein family HMM PF00302
YP_001386555.1	identified by match to protein family HMM PF00440
YP_001386556.1	identified by match to protein family HMM PF00583
YP_001386557.1	identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222
YP_001386558.1	identified by match to protein family HMM PF00165
YP_001386559.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001386560.1	identified by match to protein family HMM TIGR00277
YP_001386561.1	identified by match to protein family HMM PF04397
YP_001386562.1	identified by match to protein family HMM PF00005
YP_001386563.1	identified by Glimmer3
YP_001386564.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001386565.1	identified by match to protein family HMM PF00488
YP_001386566.1	identified by Glimmer3
YP_001386567.1	identified by match to protein family HMM PF01243
YP_001386568.1	identified by match to protein family HMM PF04304
YP_001386569.1	identified by match to protein family HMM PF01243
YP_001386571.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001386574.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001386575.1	identified by match to protein family HMM PF02915
YP_001386576.1	identified by match to protein family HMM PF01047
YP_001386577.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001386579.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001386580.1	identified by match to protein family HMM PF08011
YP_001386581.1	identified by Glimmer3
YP_001386582.1	identified by similarity to GB:CAJ62824.1
YP_001386583.1	identified by match to protein family HMM PF02698
YP_001386584.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_001386585.1	identified by match to protein family HMM PF00293
YP_001386586.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001386587.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995
YP_001386588.1	identified by match to protein family HMM PF02811
YP_001386589.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001386590.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001386591.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04405
YP_001386592.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04282
YP_001386593.1	identified by Glimmer3
YP_001386594.1	identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210
YP_001386598.1	identified by Glimmer3
YP_001386599.1	identified by Glimmer3
YP_001386600.1	identified by match to protein family HMM PF00753
YP_001386601.1	identified by match to protein family HMM PF02653
YP_001386602.1	identified by match to protein family HMM PF00005
YP_001386603.1	identified by match to protein family HMM PF04392
YP_001386604.1	identified by Glimmer3
YP_001386606.1	identified by Glimmer3
YP_001386607.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001386608.1	identified by match to protein family HMM PF01207
YP_001386609.1	identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462
YP_001386611.1	identified by match to protein family HMM PF02384
YP_001386612.1	identified by match to protein family HMM PF01420
YP_001386613.1	identified by Glimmer3
YP_001386614.1	identified by similarity to GB:ABC20367.1
YP_001386615.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851
YP_001386616.1	identified by match to protein family HMM PF00580
YP_001386617.1	identified by Glimmer3
YP_001386618.1	identified by match to protein family HMM PF00165
YP_001386619.1	identified by match to protein family HMM PF01497
YP_001386620.1	identified by match to protein family HMM PF01032
YP_001386621.1	identified by match to protein family HMM PF01032
YP_001386622.1	identified by match to protein family HMM PF00005
YP_001386623.1	identified by match to protein family HMM PF00142
YP_001386624.1	identified by Glimmer3
YP_001386625.1	identified by Glimmer3
YP_001386626.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001386627.1	identified by Glimmer3
YP_001386629.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001386630.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001386631.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_001386632.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001386633.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001386634.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_001386635.1	identified by Glimmer3
YP_001386636.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001386637.1	identified by Glimmer3
YP_001386641.1	identified by match to protein family HMM PF00376
YP_001386642.1	identified by match to protein family HMM PF00005
YP_001386643.1	identified by match to protein family HMM PF01061
YP_001386644.1	identified by match to protein family HMM PF00005
YP_001386646.1	identified by match to protein family HMM PF07505
YP_001386647.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001386648.1	identified by match to protein family HMM PF00892
YP_001386650.1	identified by match to protein family HMM PF04994
YP_001386651.1	identified by match to protein family HMM PF00583
YP_001386652.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001386653.1	identified by match to protein family HMM PF00015
YP_001386656.1	identified by match to protein family HMM PF00005
YP_001386658.1	identified by match to protein family HMM PF01965
YP_001386659.1	identified by match to protein family HMM PF00291
YP_001386660.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_001386661.1	identified by match to protein family HMM PF01053; match to protein family HMM PF01212
YP_001386662.1	identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386664.1	identified by similarity to GB:BAA34922.1; match to protein family HMM PF00704
YP_001386665.1	identified by match to protein family HMM PF00403
YP_001386667.1	identified by match to protein family HMM PF06172
YP_001386668.1	identified by Glimmer3
YP_001386669.1	identified by match to protein family HMM PF01381
YP_001386671.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_001386672.1	identified by match to protein family HMM TIGR02937
YP_001386673.1	identified by match to protein family HMM TIGR02436
YP_001386675.1	identified by Glimmer3
YP_001386678.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001386681.1	identified by Glimmer3
YP_001386683.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07485
YP_001386684.1	identified by similarity to SP:Q01257; match to protein family HMM PF01451
YP_001386685.1	identified by match to protein family HMM TIGR01909
YP_001386686.1	identified by match to protein family HMM PF01022
YP_001386687.1	identified by match to protein family HMM PF06953
YP_001386688.1	identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345
YP_001386689.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_001386691.1	identified by match to protein family HMM PF00300
YP_001386692.1	identified by match to protein family HMM PF00440
YP_001386693.1	identified by Glimmer3
YP_001386695.1	identified by match to protein family HMM PF01381
YP_001386696.1	identified by Glimmer3
YP_001386697.1	identified by match to protein family HMM PF00005
YP_001386700.1	identified by match to protein family HMM PF00303
YP_001386701.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386703.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001386704.1	identified by Glimmer3
YP_001386705.1	identified by match to protein family HMM PF06695
YP_001386706.1	identified by match to protein family HMM PF00005
YP_001386708.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386709.1	identified by match to protein family HMM PF00005
YP_001386711.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001386712.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386715.1	identified by match to protein family HMM PF00005
YP_001386716.1	identified by match to protein family HMM PF02687
YP_001386717.1	identified by Glimmer3
YP_001386718.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386719.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386720.1	identified by match to protein family HMM PF06555
YP_001386721.1	identified by match to protein family HMM TIGR02861
YP_001386723.1	identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036
YP_001386724.1	identified by match to protein family HMM PF00581
YP_001386725.1	identified by Glimmer3
YP_001386726.1	identified by similarity to GB:CAD51899.1
YP_001386727.1	identified by similarity to RF:XP_857072.1
YP_001386729.1	identified by Glimmer3
YP_001386730.1	identified by match to protein family HMM PF00669
YP_001386733.1	identified by match to protein family HMM PF03505
YP_001386734.1	identified by match to protein family HMM PF05588
YP_001386735.1	identified by match to protein family HMM PF00652
YP_001386736.1	identified by similarity to PIR:S68219; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209
YP_001386737.1	identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470
YP_001386738.1	identified by similarity to SP:P10845; similarity to SP:P30996; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953
YP_001386739.1	identified by match to protein family HMM PF00665
YP_001386740.1	identified by Glimmer3
YP_001386741.1	identified by match to protein family HMM PF01979
YP_001386742.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001386743.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001386744.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00496
YP_001386745.1	identified by match to protein family HMM PF04023
YP_001386746.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162
YP_001386747.1	identified by match to protein family HMM PF04294; match to protein family HMM PF07501
YP_001386748.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001386752.1	identified by match to protein family HMM PF07875
YP_001386754.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_001386755.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_001386757.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_001386758.1	identified by match to protein family HMM PF00011
YP_001386759.1	identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001386760.1	identified by match to protein family HMM PF01041
YP_001386761.1	identified by match to protein family HMM PF01041
YP_001386762.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_001386763.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954
YP_001386764.1	identified by Glimmer3
YP_001386766.1	identified by match to protein family HMM PF00561
YP_001386767.1	identified by match to protein family HMM PF03596
YP_001386768.1	identified by match to protein family HMM PF04463
YP_001386770.1	identified by match to protein family HMM PF00005
YP_001386771.1	identified by match to protein family HMM PF01381
YP_001386773.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001386774.1	identified by match to protein family HMM PF01037
YP_001386775.1	identified by match to protein family HMM PF00561
YP_001386776.1	identified by match to protein family HMM PF00583
YP_001386777.1	identified by match to protein family HMM PF00805
YP_001386778.1	identified by match to protein family HMM PF02525
YP_001386779.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001386780.1	identified by match to protein family HMM PF01022
YP_001386781.1	identified by match to protein family HMM PF00376
YP_001386782.1	identified by match to protein family HMM PF00583
YP_001386783.1	identified by match to protein family HMM PF04229
YP_001386784.1	identified by match to protein family HMM PF00583
YP_001386785.1	identified by match to protein family HMM PF02678
YP_001386786.1	identified by match to protein family HMM PF01638
YP_001386787.1	identified by match to protein family HMM PF00881
YP_001386789.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_001386790.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001386791.1	identified by match to protein family HMM PF04657
YP_001386792.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001386793.1	identified by match to protein family HMM PF00583
YP_001386797.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001386800.1	identified by match to protein family HMM PF01327
YP_001386801.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001386802.1	identified by match to protein family HMM PF00881
YP_001386803.1	identified by match to protein family HMM PF00037
YP_001386804.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001386805.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995
YP_001386806.1	identified by match to protein family HMM PF00232
YP_001386807.1	identified by Glimmer3
YP_001386808.1	identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445
YP_001386809.1	identified by match to protein family HMM PF01381
YP_001386811.1	identified by match to protein family HMM PF06555
YP_001386812.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731
YP_001386815.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_001386816.1	identified by match to protein family HMM PF04371
YP_001386817.1	identified by match to protein family HMM PF00892
YP_001386818.1	identified by match to protein family HMM PF04229
YP_001386819.1	identified by match to protein family HMM PF03734
YP_001386820.1	identified by Glimmer3
YP_001386823.1	identified by Glimmer3
YP_001386826.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02687
YP_001386827.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386828.1	identified by match to protein family HMM PF02632
YP_001386829.1	identified by Glimmer3
YP_001386830.1	identified by match to protein family HMM PF00583
YP_001386831.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR00498
YP_001386832.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_001386833.1	identified by match to protein family HMM PF00376; match to protein family HMM PF07739
YP_001386836.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001386837.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001386838.1	identified by match to protein family HMM PF00155
YP_001386839.1	catalyzes the ATP-dependent transport of cobalt
YP_001386840.1	identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165
YP_001386842.1	catalyzes the formation of siroheme from precorrin-2
YP_001386843.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001386844.1	identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469
YP_001386846.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001386847.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001386848.1	catalyzes the interconversion of precorrin-8X and cobyrinic acid
YP_001386849.1	identified by match to protein family HMM PF02517
YP_001386851.1	identified by match to protein family HMM PF01966
YP_001386853.1	identified by Glimmer3
YP_001386854.1	identified by match to protein family HMM PF00583
YP_001386855.1	identified by match to protein family HMM PF02661
YP_001386856.1	identified by match to protein family HMM PF00881
YP_001386857.1	identified by Glimmer3
YP_001386858.1	identified by match to protein family HMM PF04229
YP_001386859.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001386860.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467
YP_001386861.1	identified by match to protein family HMM PF02517
YP_001386862.1	identified by match to protein family HMM TIGR02469
YP_001386866.1	identified by Glimmer3
YP_001386869.1	identified by match to protein family HMM PF00857
YP_001386870.1	catalyzes the formation of precorrin-3A from precorrin-2
YP_001386871.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_001386872.1	identified by match to protein family HMM PF01890
YP_001386873.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466
YP_001386874.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001386876.1	identified by match to protein family HMM PF01903; match to protein family HMM PF06180
YP_001386877.1	identified by match to protein family HMM PF00288
YP_001386878.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001386879.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001386880.1	identified by match to protein family HMM PF01226
YP_001386881.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910
YP_001386882.1	with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide
YP_001386883.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912
YP_001386884.1	identified by match to protein family HMM PF00994
YP_001386885.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_001386886.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581
YP_001386887.1	identified by match to protein family HMM PF00005
YP_001386890.1	identified by match to protein family HMM PF00005
YP_001386892.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386893.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001386894.1	identified by match to protein family HMM PF00005
YP_001386895.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_001386896.1	identified by match to protein family HMM PF01497
YP_001386897.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_001386898.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001386899.1	identified by match to protein family HMM PF00165
YP_001386901.1	identified by match to protein family HMM PF00583
YP_001386902.1	identified by match to protein family HMM PF00583
YP_001386903.1	identified by match to protein family HMM PF07081
YP_001386904.1	identified by Glimmer3
YP_001386905.1	identified by match to protein family HMM PF00248
YP_001386906.1	identified by match to protein family HMM PF04993
YP_001386907.1	identified by match to protein family HMM PF00583
YP_001386908.1	identified by match to protein family HMM PF03551
YP_001386911.1	catalyzes the formation of inosine from adenosine
YP_001386912.1	identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001386913.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001386916.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_001386917.1	identified by match to protein family HMM PF02915
YP_001386918.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001386919.1	identified by match to protein family HMM PF00072
YP_001386920.1	identified by match to protein family HMM PF07656
YP_001386921.1	identified by Glimmer3
YP_001386923.1	identified by match to protein family HMM PF04055
YP_001386924.1	identified by match to protein family HMM PF00004
YP_001386925.1	identified by Glimmer3
YP_001386926.1	identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795
YP_001386928.1	identified by match to protein family HMM PF01012
YP_001386929.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001386930.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001386931.1	identified by similarity to GB:CAK20204.1
YP_001386933.1	identified by match to protein family HMM PF01047
YP_001386934.1	identified by match to protein family HMM PF04199
YP_001386935.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001386936.1	identified by match to protein family HMM PF04199
YP_001386937.1	identified by match to protein family HMM PF01047
YP_001386938.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_001386939.1	identified by match to protein family HMM PF03483
YP_001386940.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001386942.1	identified by match to protein family HMM PF00440
YP_001386944.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_001386945.1	identified by match to protein family HMM PF00027
YP_001386946.1	identified by match to protein family HMM PF01965
YP_001386947.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001386949.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437
YP_001386950.1	identified by Glimmer3
YP_001386951.1	identified by match to protein family HMM PF00583
YP_001386953.1	identified by match to protein family HMM PF02557
YP_001386954.1	identified by match to protein family HMM TIGR03090
YP_001386955.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386956.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386957.1	identified by match to protein family HMM PF00067
YP_001386958.1	identified by match to protein family HMM PF00403
YP_001386960.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001386961.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001386963.1	identified by match to protein family HMM PF00165
YP_001386964.1	identified by match to protein family HMM PF01032
YP_001386965.1	identified by match to protein family HMM PF01032
YP_001386966.1	identified by match to protein family HMM PF00005
YP_001386967.1	identified by match to protein family HMM PF01497
YP_001386968.1	identified by match to protein family HMM PF00165
YP_001386969.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001386970.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463
YP_001386972.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001386974.1	identified by match to protein family HMM PF00534
YP_001386975.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_001386976.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839
YP_001386977.1	identified by Glimmer3
YP_001386978.1	identified by match to protein family HMM PF03190
YP_001386979.1	identified by match to protein family HMM PF06081
YP_001386981.1	identified by match to protein family HMM PF02517
YP_001386982.1	identified by match to protein family HMM PF00753
YP_001386983.1	identified by match to protein family HMM PF00005
YP_001386984.1	identified by match to protein family HMM PF07670
YP_001386985.1	identified by match to protein family HMM PF03960
YP_001386987.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001386988.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992
YP_001386989.1	identified by match to protein family HMM PF07892
YP_001386990.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881
YP_001386991.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001386992.1	identified by Glimmer3
YP_001386993.1	associated with arginine deiminase pathway genes; probably functions in arginine catabolism
YP_001386994.1	identified by match to protein family HMM PF00571
YP_001386995.1	identified by Glimmer3
YP_001386996.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650
YP_001386997.1	identified by match to protein family HMM PF04023
YP_001386998.1	identified by match to protein family HMM PF07238
YP_001386999.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001387001.1	identified by match to protein family HMM PF02839
YP_001387003.1	identified by match to protein family HMM PF00005
YP_001387004.1	identified by match to protein family HMM PF00528
YP_001387005.1	identified by match to protein family HMM PF03180
YP_001387006.1	identified by match to protein family HMM PF03180
YP_001387007.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001387010.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001387011.1	identified by match to protein family HMM PF02588
YP_001387013.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001387014.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001387015.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_001387016.1	identified by Glimmer3
YP_001387017.1	identified by match to protein family HMM PF01966
YP_001387018.1	identified by match to protein family HMM PF00171
YP_001387019.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001387020.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001387021.1	identified by match to protein family HMM PF01047
YP_001387022.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797
YP_001387026.1	identified by match to protein family HMM PF00528
YP_001387027.1	identified by match to protein family HMM PF00528
YP_001387028.1	identified by match to protein family HMM PF00005
YP_001387030.1	identified by match to protein family HMM PF00583
YP_001387032.1	identified by Glimmer3
YP_001387033.2	identified by match to protein family HMM PF03956
YP_001387034.1	identified by match to protein family HMM PF00132
YP_001387035.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121
YP_001387037.1	identified by match to protein family HMM PF00571
YP_001387038.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001387041.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400
YP_001387042.1	identified by match to protein family HMM PF00266
YP_001387043.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001387044.1	identified by match to protein family HMM PF06245
YP_001387045.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001387046.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001387047.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_001387048.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02080
YP_001387050.1	identified by match to protein family HMM PF00857
YP_001387051.1	identified by match to protein family HMM PF00581
YP_001387054.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001387055.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_001387057.1	identified by match to protein family HMM PF00581
YP_001387058.1	identified by Glimmer3
YP_001387059.1	identified by match to protein family HMM PF01594
YP_001387060.1	identified by match to protein family HMM PF03819
YP_001387062.1	identified by Glimmer3
YP_001387063.1	identified by Glimmer3
YP_001387064.1	identified by match to protein family HMM PF01547
YP_001387065.1	identified by match to protein family HMM PF00528
YP_001387066.1	identified by match to protein family HMM PF00005
YP_001387069.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001387070.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_001387072.1	identified by match to protein family HMM PF04392
YP_001387073.1	identified by match to protein family HMM PF02653
YP_001387074.1	identified by match to protein family HMM PF00005
YP_001387075.1	identified by Glimmer3
YP_001387076.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001387077.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449
YP_001387078.1	identified by match to protein family HMM PF00294; match to protein family HMM PF08279
YP_001387079.1	identified by match to protein family HMM PF04227
YP_001387080.1	identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_001387081.1	identified by match to protein family HMM PF04961
YP_001387082.1	identified by match to protein family HMM PF00763; match to protein family HMM PF02882
YP_001387083.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001387084.1	identified by match to protein family HMM PF00583
YP_001387085.1	identified by Glimmer3
YP_001387087.1	identified by match to protein family HMM PF02535
YP_001387088.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001387089.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_001387090.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001387091.1	identified by match to protein family HMM PF00497
YP_001387092.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001387093.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268
YP_001387094.1	identified by Glimmer3
YP_001387095.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001387096.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001387097.1	identified by match to protein family HMM PF02518
YP_001387098.1	identified by match to protein family HMM PF00005
YP_001387100.1	identified by match to protein family HMM PF03009
YP_001387102.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176
YP_001387103.1	identified by match to protein family HMM PF00440
YP_001387104.1	identified by match to protein family HMM PF00999
YP_001387105.1	identified by match to protein family HMM PF02696
YP_001387106.1	identified by match to protein family HMM PF01593
YP_001387107.1	identified by match to protein family HMM PF00165
YP_001387109.1	identified by match to protein family HMM PF02055
YP_001387110.1	identified by match to protein family HMM PF00480
YP_001387111.1	identified by match to protein family HMM PF00232
YP_001387112.1	identified by match to protein family HMM PF00686; match to protein family HMM PF01373
YP_001387113.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001387114.1	identified by match to protein family HMM PF00392
YP_001387115.1	identified by match to protein family HMM PF00005
YP_001387119.1	identified by Glimmer3
YP_001387120.1	identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239
YP_001387121.1	identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001387122.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_001387123.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_001387124.1	identified by Glimmer3
YP_001387125.1	identified by Glimmer3
YP_001387127.1	identified by match to protein family HMM PF01244
YP_001387128.1	identified by Glimmer3
YP_001387129.1	identified by match to protein family HMM PF02687
YP_001387130.1	identified by Glimmer3
YP_001387131.1	identified by match to protein family HMM PF00005
YP_001387132.1	identified by match to protein family HMM PF00528
YP_001387133.1	identified by match to protein family HMM PF00528
YP_001387134.1	identified by match to protein family HMM PF00496
YP_001387137.1	identified by match to protein family HMM PF05067
YP_001387140.1	identified by match to protein family HMM PF04525
YP_001387141.1	identified by Glimmer3
YP_001387142.1	identified by match to protein family HMM PF00692
YP_001387143.1	identified by match to protein family HMM TIGR02861
YP_001387145.1	identified by similarity to GB:ABK61158.1
YP_001387146.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001387149.1	identified by match to protein family HMM PF00440
YP_001387150.1	identified by Glimmer3
YP_001387151.1	identified by Glimmer3
YP_001387152.1	identified by Glimmer3
YP_001387153.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001387154.1	identified by Glimmer3
YP_001387155.1	identified by match to protein family HMM PF01381
YP_001387158.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_001387159.1	identified by match to protein family HMM PF00171
YP_001387160.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001387162.1	identified by match to protein family HMM PF09338
YP_001387163.1	Selenoprotein. identified by match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918
YP_001387164.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_001387165.1	identified by match to protein family HMM PF00085
YP_001387167.1	identified by match to protein family HMM PF08545
YP_001387168.1	identified by match to protein family HMM PF02504
YP_001387169.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_001387170.1	identified by match to protein family HMM PF07669
YP_001387171.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_001387172.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001387173.1	identified by Glimmer3
YP_001387174.1	identified by match to protein family HMM PF00596
YP_001387175.1	identified by Glimmer3
YP_001387176.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001387178.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001387179.1	identified by match to protein family HMM PF04239
YP_001387183.1	identified by similarity to GB:AAZ70622.1
YP_001387185.1	identified by Glimmer3
YP_001387186.1	identified by Glimmer3
YP_001387189.1	molybdenum cofactor-binding protein; participates in purine salvage
YP_001387190.1	FAD-binding subunit; with XdhA and XdhC participates in purine salvage
YP_001387191.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001387192.1	identified by match to protein family HMM PF00383
YP_001387193.1	decatenates replicating daughter chromosomes
YP_001387194.1	identified by match to protein family HMM PF02659
YP_001387197.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001387198.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_001387199.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001387200.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001387202.1	identified by match to protein family HMM PF00535
YP_001387207.1	identified by match to protein family HMM PF02583
YP_001387208.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_001387209.1	identified by match to protein family HMM PF00403
YP_001387210.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001387211.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387212.1	identified by match to protein family HMM PF02517
YP_001387213.1	identified by match to protein family HMM PF02579
YP_001387214.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001387215.1	identified by match to protein family HMM PF01243
YP_001387216.1	identified by similarity to SP:Q8K9S1
YP_001387217.1	identified by match to protein family HMM PF01230
YP_001387219.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_001387220.1	identified by match to protein family HMM PF07907
YP_001387221.1	identified by match to protein family HMM PF02386
YP_001387222.1	identified by Glimmer3
YP_001387223.1	identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573
YP_001387224.1	identified by match to protein family HMM PF07853
YP_001387225.1	identified by match to protein family HMM PF00392
YP_001387226.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07486
YP_001387227.1	identified by match to protein family HMM PF02915
YP_001387228.1	identified by match to protein family HMM PF04122
YP_001387229.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_001387230.1	identified by match to protein family HMM PF01255
YP_001387232.1	identified by Glimmer3
YP_001387233.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001387234.1	identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702
YP_001387235.1	identified by match to protein family HMM PF00037
YP_001387236.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001387237.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_001387238.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001387239.1	identified by match to protein family HMM PF07690
YP_001387240.1	identified by match to protein family HMM PF01497
YP_001387241.1	identified by match to protein family HMM PF01032
YP_001387242.1	identified by match to protein family HMM PF00005
YP_001387244.1	identified by match to protein family HMM PF00037
YP_001387246.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_001387247.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_001387248.1	identified by match to protein family HMM PF05913
YP_001387249.1	identified by match to protein family HMM PF06475
YP_001387250.1	identified by match to protein family HMM PF06555
YP_001387253.1	identified by Glimmer3
YP_001387255.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001387256.1	identified by match to protein family HMM PF00496
YP_001387257.1	identified by match to protein family HMM PF00528
YP_001387258.1	identified by match to protein family HMM PF00528
YP_001387259.1	identified by match to protein family HMM PF00005
YP_001387260.1	identified by match to protein family HMM PF00005
YP_001387262.1	identified by match to protein family HMM PF00950
YP_001387263.1	identified by match to protein family HMM PF00005
YP_001387264.1	identified by match to protein family HMM PF01297
YP_001387266.1	identified by match to protein family HMM PF00271
YP_001387267.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001387270.1	identified by match to protein family HMM PF00528
YP_001387271.1	identified by match to protein family HMM PF00005
YP_001387272.1	identified by match to protein family HMM PF01475
YP_001387273.1	identified by match to protein family HMM PF02001
YP_001387274.1	identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476
YP_001387276.1	member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_001387277.1	identified by match to protein family HMM PF00324
YP_001387278.1	identified by match to protein family HMM PF08000
YP_001387279.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_001387280.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001387281.1	identified by match to protein family HMM PF00005
YP_001387283.1	identified by match to protein family HMM PF01061
YP_001387284.1	identified by Glimmer3
YP_001387285.1	identified by match to protein family HMM PF00881
YP_001387287.1	identified by match to protein family HMM PF00313
YP_001387288.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001387291.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_001387292.1	identified by match to protein family HMM PF01625
YP_001387293.1	identified by match to protein family HMM PF00005
YP_001387294.1	identified by match to protein family HMM PF02687
YP_001387296.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387297.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001387298.1	identified by match to protein family HMM PF00005
YP_001387302.1	identified by match to protein family HMM PF00155
YP_001387303.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001387304.1	identified by match to protein family HMM PF00005
YP_001387305.1	identified by match to protein family HMM PF01381
YP_001387306.1	identified by match to protein family HMM PF00768
YP_001387307.1	identified by match to protein family HMM PF00293
YP_001387309.1	identified by match to protein family HMM PF00465
YP_001387310.1	identified by Glimmer3
YP_001387311.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808
YP_001387312.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_001387313.1	identified by match to protein family HMM PF00497
YP_001387314.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001387316.1	identified by match to protein family HMM PF00580
YP_001387319.1	identified by Glimmer3
YP_001387320.1	identified by match to protein family HMM PF00583
YP_001387321.1	identified by Glimmer3
YP_001387322.1	identified by Glimmer3
YP_001387323.1	identified by Glimmer3
YP_001387326.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01520
YP_001387328.1	identified by match to protein family HMM PF07875
YP_001387329.1	identified by Glimmer3
YP_001387330.1	identified by Glimmer3
YP_001387331.1	identified by Glimmer3
YP_001387332.1	identified by match to protein family HMM PF02491
YP_001387333.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001387334.1	identified by match to protein family HMM PF01520
YP_001387335.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001387336.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_001387337.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900
YP_001387340.1	identified by match to protein family HMM PF00465
YP_001387341.1	identified by match to protein family HMM PF05362
YP_001387342.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387343.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387344.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387345.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387346.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387347.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413
YP_001387348.1	identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078
YP_001387349.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001387350.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001387351.1	identified by Glimmer3
YP_001387352.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_001387353.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001387354.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001387355.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_001387357.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_001387358.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001387359.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_001387360.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001387361.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615
YP_001387362.1	identified by match to protein family HMM PF08478
YP_001387363.1	identified by match to protein family HMM PF05949
YP_001387364.1	identified by match to protein family HMM PF06947
YP_001387365.1	identified by match to protein family HMM PF05949
YP_001387366.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_001387367.1	identified by match to protein family HMM PF04472
YP_001387368.1	identified by match to protein family HMM PF02325
YP_001387370.1	identified by match to protein family HMM PF05103
YP_001387371.1	identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357
YP_001387372.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001387373.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_001387374.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001387375.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890
YP_001387376.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001387377.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001387378.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001387379.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_001387380.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001387381.1	identified by match to protein family HMM PF01170
YP_001387382.1	identified by Glimmer3
YP_001387383.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_001387384.1	identified by match to protein family HMM PF00528
YP_001387385.1	identified by match to protein family HMM PF00005
YP_001387387.1	identified by match to protein family HMM PF01734
YP_001387389.1	identified by match to protein family HMM PF01208
YP_001387390.1	identified by match to protein family HMM PF03553
YP_001387391.1	identified by match to protein family HMM PF00111
YP_001387392.1	identified by match to protein family HMM PF02492
YP_001387393.1	identified by match to protein family HMM PF01208
YP_001387394.1	identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370
YP_001387395.1	catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M
YP_001387396.1	identified by match to protein family HMM PF01208
YP_001387397.1	identified by match to protein family HMM PF00005
YP_001387398.1	identified by match to protein family HMM PF00528
YP_001387399.1	identified by match to protein family HMM PF03180
YP_001387400.1	identified by match to protein family HMM PF02493
YP_001387401.1	identified by match to protein family HMM PF00724
YP_001387402.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_001387403.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_001387404.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01751
YP_001387405.1	identified by match to protein family HMM PF00488
YP_001387406.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00248
YP_001387407.1	identified by match to protein family HMM PF04073
YP_001387408.1	identified by match to protein family HMM PF00005
YP_001387409.1	identified by match to protein family HMM PF00440
YP_001387411.1	identified by match to protein family HMM PF00005
YP_001387412.1	identified by match to protein family HMM PF00528
YP_001387413.1	identified by match to protein family HMM PF00528
YP_001387414.1	identified by match to protein family HMM PF01547
YP_001387415.1	identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771
YP_001387416.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001387417.1	identified by match to protein family HMM TIGR01909
YP_001387418.1	identified by match to protein family HMM PF03595
YP_001387420.1	identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001387421.1	identified by match to protein family HMM PF03860
YP_001387422.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001387423.1	identified by match to protein family HMM PF01047
YP_001387425.1	identified by match to protein family HMM PF01638
YP_001387426.1	identified by match to protein family HMM PF00903
YP_001387427.1	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated
YP_001387428.1	identified by match to protein family HMM PF00165
YP_001387429.1	identified by match to protein family HMM PF06792
YP_001387431.1	identified by match to protein family HMM PF01381
YP_001387432.1	identified by similarity to SP:Q80XR2
YP_001387433.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001387434.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001387435.1	identified by match to protein family HMM PF01325; match to protein family HMM PF02742
YP_001387437.1	identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277
YP_001387438.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001387439.1	identified by match to protein family HMM PF00903
YP_001387440.1	identified by match to protein family HMM PF00027
YP_001387441.1	identified by match to protein family HMM PF00196
YP_001387442.1	identified by match to protein family HMM PF06445
YP_001387443.1	identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001387444.1	identified by match to protein family HMM PF06050
YP_001387445.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001387446.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_001387447.1	identified by match to protein family HMM PF04055
YP_001387448.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001387449.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_001387450.1	identified by match to protein family HMM PF00015
YP_001387451.1	identified by match to protein family HMM PF06161
YP_001387453.1	identified by match to protein family HMM PF04198
YP_001387454.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001387455.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_001387456.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001387457.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001387458.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001387459.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001387460.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001387461.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001387462.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001387463.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001387464.1	identified by match to protein family HMM PF04143
YP_001387465.1	identified by match to protein family HMM PF01206
YP_001387466.1	identified by match to protein family HMM PF04143
YP_001387467.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001387468.1	identified by match to protein family HMM PF01235
YP_001387469.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_001387470.1	identified by match to protein family HMM PF04143
YP_001387471.1	identified by match to protein family HMM PF00005
YP_001387474.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387475.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001387476.1	identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078
YP_001387477.1	identified by match to protein family HMM PF00324
YP_001387478.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_001387479.1	identified by match to protein family HMM PF08876
YP_001387480.1	identified by match to protein family HMM PF01966
YP_001387482.1	identified by Glimmer3
YP_001387483.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455
YP_001387484.1	identified by match to protein family HMM PF04607
YP_001387486.1	identified by match to protein family HMM PF00165
YP_001387487.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387488.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387489.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001387490.1	identified by match to protein family HMM PF00480
YP_001387491.1	identified by match to protein family HMM PF00128
YP_001387492.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003
YP_001387493.1	identified by match to protein family HMM TIGR02840
YP_001387497.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001387498.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387500.1	identified by match to protein family HMM PF07690
YP_001387501.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001387502.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001387503.1	identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001387505.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_001387506.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_001387507.1	identified by match to protein family HMM PF02965
YP_001387508.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607
YP_001387510.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001387512.1	identified by match to protein family HMM TIGR02058
YP_001387513.1	identified by match to protein family HMM PF00676
YP_001387514.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001387515.1	identified by match to protein family HMM PF01513
YP_001387516.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_001387517.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001387518.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_001387519.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_001387520.1	identified by match to protein family HMM PF00528; match to protein family HMM PF04069
YP_001387521.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001387522.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_001387523.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_001387524.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001387525.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001387526.1	identified by match to protein family HMM PF00465
YP_001387527.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001387528.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001387529.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001387530.1	identified by match to protein family HMM PF00805
YP_001387531.1	identified by match to protein family HMM PF02368
YP_001387532.1	identified by Glimmer3
YP_001387535.1	identified by match to protein family HMM PF08239
YP_001387536.1	identified by Glimmer3
YP_001387537.1	identified by Glimmer3
YP_001387540.1	identified by match to protein family HMM PF01814
YP_001387541.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001387542.1	identified by match to protein family HMM PF00015
YP_001387543.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_001387544.1	identified by match to protein family HMM PF06161
YP_001387545.1	identified by match to protein family HMM PF00106
YP_001387546.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001387547.1	identified by match to protein family HMM PF07656
YP_001387549.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455
YP_001387550.1	identified by match to protein family HMM PF01980
YP_001387551.1	identified by match to protein family HMM PF02663
YP_001387552.1	identified by match to protein family HMM PF00496
YP_001387553.1	identified by match to protein family HMM PF00528
YP_001387554.1	identified by match to protein family HMM PF00528
YP_001387555.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001387556.1	identified by match to protein family HMM PF00929
YP_001387557.1	identified by match to protein family HMM PF06207
YP_001387558.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001387559.1	identified by match to protein family HMM PF00011
YP_001387560.1	identified by match to protein family HMM PF07690
YP_001387561.1	identified by match to protein family HMM PF00440
YP_001387562.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_001387563.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001387564.1	identified by Glimmer3
YP_001387567.1	identified by Glimmer3
YP_001387568.1	identified by match to protein family HMM PF00294; match to protein family HMM PF08543
YP_001387569.1	identified by match to protein family HMM PF00188; match to protein family HMM PF01476
YP_001387570.1	identified by Glimmer3
YP_001387571.1	identified by match to protein family HMM PF00313
YP_001387572.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001387573.1	identified by match to protein family HMM PF00005
YP_001387574.1	identified by match to protein family HMM PF04073
YP_001387575.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001387576.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584
YP_001387577.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001387578.1	identified by match to protein family HMM PF00575
YP_001387579.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_001387580.1	identified by Glimmer3
YP_001387581.1	identified by match to protein family HMM PF00560; match to protein family HMM PF07532
YP_001387582.1	identified by match to protein family HMM PF01832
YP_001387583.1	identified by match to protein family HMM PF00210
YP_001387585.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04509
YP_001387586.1	identified by match to protein family HMM PF04509
YP_001387587.1	identified by match to protein family HMM PF07670
YP_001387588.1	identified by match to protein family HMM PF00269
YP_001387589.1	identified by match to protein family HMM PF00269
YP_001387590.1	Selenoprotein. identified by match to protein family HMM TIGR01911
YP_001387591.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001387593.1	Represses a number of genes involved in the response to DNA damage
YP_001387594.1	identified by match to protein family HMM PF01053; match to protein family HMM PF06838
YP_001387595.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_001387596.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001387597.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001387598.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001387599.1	identified by match to protein family HMM PF00155
YP_001387600.1	identified by similarity to GB:ABK61786.1
YP_001387601.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001387602.1	identified by match to protein family HMM PF00583
YP_001387603.1	identified by match to protein family HMM TIGR02906
YP_001387604.1	these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001387605.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001387606.1	identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796
YP_001387607.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_001387608.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_001387609.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001387610.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001387612.1	identified by match to protein family HMM PF06354
YP_001387613.1	identified by match to protein family HMM PF00535
YP_001387614.1	identified by Glimmer3
YP_001387615.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001387616.1	identified by match to protein family HMM PF02683
YP_001387617.1	identified by match to protein family HMM PF00085
YP_001387618.1	identified by match to protein family HMM PF00795
YP_001387619.1	identified by Glimmer3
YP_001387620.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080
YP_001387621.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001387622.1	identified by match to protein family HMM PF00583
YP_001387624.1	identified by match to protein family HMM PF01906
YP_001387625.1	identified by Glimmer3
YP_001387626.1	identified by similarity to GB:ABA89073.1
YP_001387627.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229
YP_001387628.1	identified by match to protein family HMM PF07228
YP_001387629.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229
YP_001387630.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124
YP_001387631.1	identified by match to protein family HMM PF01924
YP_001387632.1	identified by Glimmer3
YP_001387633.1	identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143
YP_001387634.1	identified by Glimmer3
YP_001387635.1	identified by match to protein family HMM PF00173
YP_001387636.1	identified by match to protein family HMM PF01750
YP_001387637.1	identified by match to protein family HMM PF00374
YP_001387638.1	identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391
YP_001387639.1	identified by match to protein family HMM PF05857
YP_001387640.1	identified by Glimmer3
YP_001387642.1	identified by Glimmer3
YP_001387643.1	identified by Glimmer3
YP_001387644.1	identified by match to protein family HMM PF00005
YP_001387645.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512
YP_001387646.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01512
YP_001387647.1	identified by match to protein family HMM PF01257
YP_001387648.1	identified by match to protein family HMM PF00999
YP_001387649.1	identified by match to protein family HMM PF03747
YP_001387650.1	identified by match to protein family HMM PF01594
YP_001387651.1	identified by match to protein family HMM PF00768
YP_001387653.1	identified by match to protein family HMM TIGR02874
YP_001387654.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_001387655.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_001387656.1	identified by similarity to PDB:1VFG_A
YP_001387657.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_001387659.1	identified by match to protein family HMM PF03372
YP_001387661.1	identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644
YP_001387662.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001387663.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225
YP_001387664.1	identified by similarity to GB:AAK80026.1
YP_001387665.1	identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831
YP_001387666.1	identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052
YP_001387667.1	identified by match to protein family HMM PF00324
YP_001387668.1	identified by match to protein family HMM PF00877
YP_001387669.1	identified by Glimmer3
YP_001387670.1	identified by match to protein family HMM PF00589
YP_001387671.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875
YP_001387672.1	identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860
YP_001387673.1	identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001
YP_001387674.1	identified by match to protein family HMM PF00742; match to protein family HMM PF03447
YP_001387675.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_001387676.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_001387677.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_001387678.1	identified by match to protein family HMM PF01513
YP_001387679.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_001387680.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001387682.1	identified by match to protein family HMM PF00348
YP_001387683.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_001387684.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001387685.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001387686.1	identified by match to protein family HMM PF03780
YP_001387688.1	identified by match to protein family HMM TIGR02830
YP_001387689.1	identified by match to protein family HMM TIGR02896
YP_001387690.1	identified by match to protein family HMM TIGR02829
YP_001387691.1	identified by match to protein family HMM TIGR02849
YP_001387692.1	identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848
YP_001387693.1	necessary for complete engulfment of forespore
YP_001387694.1	identified by match to protein family HMM TIGR02858
YP_001387696.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001387697.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001387698.1	identified by match to protein family HMM PF01202
YP_001387700.1	identified by Glimmer3
YP_001387703.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001387704.1	identified by match to protein family HMM TIGR02532
YP_001387706.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001387707.1	identified by match to protein family HMM PF00482
YP_001387708.1	identified by match to protein family HMM PF00437; match to protein family HMM PF05157
YP_001387711.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001387712.1	identified by match to protein family HMM PF05670; match to protein family HMM PF05833
YP_001387713.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001387714.1	identified by Glimmer3
YP_001387715.1	identified by match to protein family HMM PF01230
YP_001387716.1	identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788
YP_001387717.1	identified by Glimmer3
YP_001387718.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001387719.1	identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806
YP_001387721.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387722.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001387723.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_001387724.1	identified by match to protein family HMM PF00072
YP_001387725.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001387726.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387729.1	identified by match to protein family HMM PF00005
YP_001387731.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387732.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387733.1	identified by match to protein family HMM PF01047
YP_001387734.1	identified by match to protein family HMM PF00899
YP_001387735.1	identified by match to protein family HMM PF02597
YP_001387736.1	identified by match to protein family HMM PF01314; match to protein family HMM PF02730
YP_001387737.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001387738.1	identified by match to protein family HMM PF03473
YP_001387739.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001387740.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_001387741.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001387742.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001387743.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_001387744.1	identified by match to protein family HMM PF00005
YP_001387745.1	identified by match to protein family HMM PF00528
YP_001387746.1	identified by match to protein family HMM PF01547
YP_001387747.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001387748.1	identified by Glimmer3
YP_001387749.1	identified by match to protein family HMM PF09335
YP_001387750.1	identified by match to protein family HMM PF00005
YP_001387751.1	identified by match to protein family HMM PF02687
YP_001387752.1	identified by Glimmer3
YP_001387753.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387754.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001387755.1	identified by match to protein family HMM PF00376
YP_001387756.1	identified by match to protein family HMM PF03358
YP_001387757.1	identified by match to protein family HMM PF00560
YP_001387758.1	identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296
YP_001387759.1	identified by match to protein family HMM PF00158; match to protein family HMM PF07728
YP_001387761.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_001387762.1	identified by match to protein family HMM PF00375
YP_001387763.1	identified by match to protein family HMM PF00155
YP_001387764.1	identified by match to protein family HMM PF06354
YP_001387766.1	identified by match to protein family HMM TIGR03296
YP_001387767.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001387768.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387770.1	identified by match to protein family HMM PF02596
YP_001387771.1	identified by match to protein family HMM PF02361
YP_001387772.1	identified by match to protein family HMM PF00005
YP_001387774.1	identified by match to protein family HMM PF01168
YP_001387775.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001387776.1	identified by match to protein family HMM PF03323
YP_001387777.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001387778.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_001387779.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001387780.1	identified by match to protein family HMM TIGR01909
YP_001387781.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001387782.1	identified by match to protein family HMM PF04055
YP_001387783.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001387784.1	the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli
YP_001387785.1	molecular chaperone
YP_001387786.1	identified by match to protein family HMM PF00488
YP_001387787.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_001387788.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403
YP_001387789.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404
YP_001387790.1	identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848
YP_001387791.1	identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427
YP_001387792.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_001387793.1	catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway
YP_001387794.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001387795.1	identified by match to protein family HMM PF01042
YP_001387796.1	identified by match to protein family HMM PF04055
YP_001387798.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_001387800.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001387801.1	identified by Glimmer3
YP_001387802.1	identified by match to protein family HMM PF01168
YP_001387804.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001387805.1	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
YP_001387806.1	identified by match to protein family HMM PF00860
YP_001387807.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001387808.1	identified by match to protein family HMM PF06354
YP_001387809.1	identified by match to protein family HMM PF00158
YP_001387810.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001387811.1	identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909
YP_001387812.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001387813.1	identified by match to protein family HMM PF00892
YP_001387814.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001387815.1	identified by match to protein family HMM PF00005
YP_001387817.1	identified by match to protein family HMM PF00266
YP_001387818.1	identified by match to protein family HMM PF00302
YP_001387823.1	identified by match to protein family HMM PF01381
YP_001387825.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001387826.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001387827.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001387828.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250
YP_001387829.1	identified by Glimmer3
YP_001387830.1	identified by match to protein family HMM PF00209
YP_001387831.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001387832.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001387833.1	identified by Glimmer3
YP_001387835.1	identified by match to protein family HMM PF00881
YP_001387836.1	identified by Glimmer3
YP_001387837.1	identified by Glimmer3
YP_001387839.1	similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001387840.1	identified by match to protein family HMM PF00440
YP_001387843.1	identified by Glimmer3
YP_001387844.1	identified by match to protein family HMM PF00132
YP_001387845.1	identified by match to protein family HMM PF01041
YP_001387846.1	identified by Glimmer3
YP_001387847.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208
YP_001387848.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_001387852.1	identified by Glimmer3
YP_001387854.1	identified by match to protein family HMM PF04892
YP_001387855.1	identified by Glimmer3
YP_001387857.1	identified by match to protein family HMM PF00005
YP_001387858.1	identified by match to protein family HMM PF00392
YP_001387859.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_001387860.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_001387862.1	Catalyzes the deamination of cytosine to uracil and ammonia
YP_001387863.1	identified by match to protein family HMM PF02133
YP_001387864.1	identified by Glimmer3
YP_001387867.1	identified by match to protein family HMM PF00005
YP_001387868.1	identified by match to protein family HMM PF02361
YP_001387869.1	identified by match to protein family HMM TIGR02185
YP_001387870.1	identified by match to protein family HMM PF00165
YP_001387871.1	identified by match to protein family HMM PF00583
YP_001387872.1	identified by Glimmer3
YP_001387874.1	identified by match to protein family HMM PF00293
YP_001387875.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_001387876.1	identified by Glimmer3
YP_001387877.1	identified by Glimmer3
YP_001387878.1	identified by match to protein family HMM PF00580
YP_001387880.1	identified by Glimmer3
YP_001387881.1	identified by Glimmer3
YP_001387883.1	identified by Glimmer3
YP_001387884.1	identified by Glimmer3
YP_001387887.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001387888.1	identified by match to protein family HMM PF00561
YP_001387890.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001387891.1	identified by match to protein family HMM PF00535
YP_001387892.1	identified by match to protein family HMM PF00534; match to protein family HMM PF00535
YP_001387893.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231
YP_001387894.1	identified by Glimmer3
YP_001387895.1	identified by match to protein family HMM PF00936
YP_001387896.1	identified by match to protein family HMM PF06130
YP_001387897.1	identified by match to protein family HMM TIGR02518
YP_001387898.1	identified by match to protein family HMM PF00936
YP_001387899.1	identified by match to protein family HMM PF05899; match to protein family HMM PF06249
YP_001387900.1	identified by match to protein family HMM PF03319
YP_001387901.1	identified by match to protein family HMM PF00936
YP_001387902.1	identified by match to protein family HMM TIGR02529
YP_001387905.1	identified by match to protein family HMM PF00936
YP_001387906.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494
YP_001387907.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901
YP_001387909.1	identified by match to protein family HMM PF00936
YP_001387910.1	identified by match to protein family HMM PF00936
YP_001387912.1	identified by Glimmer3
YP_001387914.1	identified by match to protein family HMM PF00376
YP_001387915.1	identified by match to protein family HMM PF00465
YP_001387916.1	identified by match to protein family HMM PF01554
YP_001387917.1	identified by Glimmer3
YP_001387919.1	identified by Glimmer3
YP_001387920.1	identified by match to protein family HMM PF09234
YP_001387922.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764
YP_001387923.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_001387924.1	identified by Glimmer3
YP_001387925.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001387926.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001387929.1	identified by match to protein family HMM PF00005
YP_001387930.1	identified by match to protein family HMM PF02687
YP_001387931.1	FAD/NAD(P)-binding domain
YP_001387934.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001387935.1	identified by match to protein family HMM PF01261
YP_001387936.1	identified by match to protein family HMM PF01761
YP_001387937.1	identified by match to protein family HMM PF02687
YP_001387938.1	identified by match to protein family HMM PF00005
YP_001387940.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279
YP_001387941.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_001387942.1	identified by match to protein family HMM PF02302
YP_001387943.1	identified by match to protein family HMM PF00359
YP_001387944.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001387945.1	identified by Glimmer3
YP_001387946.1	identified by Glimmer3
YP_001387947.1	identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023
YP_001387950.1	identified by match to protein family HMM PF00132
YP_001387951.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001387952.1	identified by match to protein family HMM PF08242
YP_001387953.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_001387955.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_001387956.1	identified by match to protein family HMM PF00376
YP_001387957.1	identified by Glimmer3
YP_001387958.1	identified by Glimmer3
YP_001387959.1	identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898
YP_001387961.1	identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580
YP_001387963.1	identified by match to protein family HMM TIGR02577
YP_001387964.1	identified by Glimmer3
YP_001387965.1	identified by Glimmer3
YP_001387966.1	identified by Glimmer3
YP_001387967.1	identified by match to protein family HMM TIGR01877
YP_001387971.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001387972.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001387974.1	identified by match to protein family HMM PF01381
YP_001387975.1	identified by match to protein family HMM PF07859
YP_001387977.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_001387978.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173
YP_001387979.2	identified by Glimmer3
YP_001387980.1	identified by match to protein family HMM PF00324
YP_001387981.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001387983.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001387984.1	identified by match to protein family HMM PF01012
YP_001387985.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001387986.1	identified by match to protein family HMM PF06050
YP_001387987.1	identified by match to protein family HMM PF06050
YP_001387988.1	identified by match to protein family HMM PF02515
YP_001387989.1	identified by match to protein family HMM PF02579
YP_001387990.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01656
YP_001387991.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01656
YP_001387992.1	identified by match to protein family HMM PF02579
YP_001387993.1	identified by Glimmer3
YP_001387994.1	identified by match to protein family HMM PF00691
YP_001387995.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_001387997.1	identified by match to protein family HMM PF04122
YP_001388000.1	identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733
YP_001388001.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001388002.1	identified by match to protein family HMM PF01212
YP_001388003.1	identified by Glimmer3
YP_001388004.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_001388005.1	identified by match to protein family HMM PF00106
YP_001388007.1	identified by match to protein family HMM PF00005
YP_001388008.1	identified by match to protein family HMM PF00583
YP_001388009.1	identified by match to protein family HMM PF01047
YP_001388010.1	identified by Glimmer3
YP_001388012.1	identified by match to protein family HMM PF01208
YP_001388013.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324
YP_001388014.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_001388015.1	identified by match to protein family HMM PF00324
YP_001388016.1	identified by match to protein family HMM PF01661
YP_001388017.1	identified by match to protein family HMM PF06961
YP_001388018.1	identified by Glimmer3
YP_001388019.1	identified by match to protein family HMM PF01047
YP_001388022.1	identified by match to protein family HMM PF02110
YP_001388025.1	identified by match to protein family HMM PF00583
YP_001388026.1	identified by match to protein family HMM PF00753
YP_001388028.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001388029.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_001388030.1	identified by match to protein family HMM PF02632
YP_001388032.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01047
YP_001388034.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001388035.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001388036.1	identified by Glimmer3
YP_001388038.1	identified by Glimmer3
YP_001388039.1	identified by match to protein family HMM PF02275; match to protein family HMM PF03417
YP_001388040.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001388041.1	identified by Glimmer3
YP_001388042.1	identified by Glimmer3
YP_001388043.1	identified by Glimmer3
YP_001388047.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_001388048.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_001388049.1	identified by match to protein family HMM PF00005
YP_001388050.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001388051.1	identified by match to protein family HMM PF00165
YP_001388054.1	identified by match to protein family HMM PF00005
YP_001388055.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001388056.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001388058.1	identified by match to protein family HMM PF00929
YP_001388059.1	identified by match to protein family HMM PF07876
YP_001388060.1	identified by match to protein family HMM PF00753
YP_001388061.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_001388062.1	identified by match to protein family HMM PF01381
YP_001388063.1	involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links
YP_001388064.1	identified by Glimmer3
YP_001388065.1	identified by match to protein family HMM PF00106
YP_001388067.1	identified by match to protein family HMM PF02366
YP_001388070.1	identified by Glimmer3
YP_001388071.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_001388072.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001388073.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_001388074.1	identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001388075.1	identified by Glimmer3
YP_001388076.1	identified by Glimmer3
YP_001388077.1	identified by match to protein family HMM PF03551
YP_001388079.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001388080.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001388081.1	identified by match to protein family HMM PF00627
YP_001388082.1	identified by Glimmer3
YP_001388084.1	identified by Glimmer3
YP_001388085.1	identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_001388086.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001388087.1	identified by match to protein family HMM PF04070
YP_001388088.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_001388089.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001388090.1	identified by match to protein family HMM PF00892; match to protein family HMM PF00893
YP_001388092.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_001388093.1	identified by match to protein family HMM PF04232
YP_001388094.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001388095.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001388096.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_001388097.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125
YP_001388098.1	identified by match to protein family HMM PF01580
YP_001388099.1	identified by match to protein family HMM PF00574
YP_001388100.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_001388101.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_001388102.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001388103.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_001388104.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001388105.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001388106.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001388107.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_001388108.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001388109.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001388110.1	identified by match to protein family HMM PF01248
YP_001388111.1	identified by match to protein family HMM PF04296
YP_001388112.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001388113.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001388114.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_001388115.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001388116.1	identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_001388117.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001388118.1	identified by match to protein family HMM PF01594
YP_001388119.1	identified by Glimmer3
YP_001388120.1	identified by Glimmer3
YP_001388121.1	identified by match to protein family HMM PF01148
YP_001388122.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_001388123.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001388124.1	Catalyzes the phosphorylation of UMP to UDP
YP_001388126.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001388127.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001388128.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_001388129.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001388130.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_001388131.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_001388132.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_001388133.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001388134.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_001388135.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001388136.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001388137.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001388138.1	Essential for efficient processing of 16S rRNA
YP_001388140.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001388141.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_001388142.1	identified by match to protein family HMM PF04297
YP_001388143.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_001388144.1	identified by match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168
YP_001388145.1	identified by Glimmer3
YP_001388146.1	identified by match to protein family HMM PF04055
YP_001388147.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001388148.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001388149.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001388150.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001388151.1	identified by match to protein family HMM PF02620
YP_001388152.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001388153.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_001388156.1	identified by Glimmer3
YP_001388157.1	identified by match to protein family HMM PF09338
YP_001388158.1	identified by Glimmer3
YP_001388159.1	identified by match to protein family HMM PF01512
YP_001388161.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001388164.1	identified by Glimmer3
YP_001388165.1	identified by match to protein family HMM PF00324
YP_001388169.1	identified by match to protein family HMM PF05544
YP_001388173.1	identified by Glimmer3
YP_001388174.1	identified by match to protein family HMM PF09338
YP_001388175.1	identified by Glimmer3
YP_001388176.1	identified by match to protein family HMM PF01512
YP_001388177.1	identified by Glimmer3
YP_001388178.1	identified by match to protein family HMM PF01512
YP_001388184.1	identified by Glimmer3
YP_001388186.1	identified by match to protein family HMM PF01512
YP_001388187.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001388188.1	identified by match to protein family HMM PF05636
YP_001388189.1	identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871
YP_001388191.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001388192.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_001388193.1	catalyzes branch migration in Holliday junction intermediates
YP_001388194.1	identified by match to protein family HMM PF02734
YP_001388195.1	identified by match to protein family HMM PF03780
YP_001388196.1	required for 70S ribosome assembly
YP_001388197.1	identified by Glimmer3
YP_001388199.1	identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378
YP_001388200.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001388201.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001388202.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714
YP_001388203.1	identified by match to protein family HMM PF00481
YP_001388204.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001388205.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_001388206.1	identified by match to protein family HMM PF04298
YP_001388207.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001388208.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001388209.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001388210.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001388211.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001388212.1	Essential for recycling GMP and indirectly, cGMP
YP_001388213.1	identified by match to protein family HMM PF04025
YP_001388214.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_001388215.1	identified by match to protein family HMM PF00710
YP_001388217.1	identified by match to protein family HMM TIGR02836
YP_001388220.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001388221.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001388222.1	identified by match to protein family HMM PF04459
YP_001388223.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_001388224.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001388225.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_001388226.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_001388227.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136
YP_001388228.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_001388229.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001388230.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_001388231.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_001388232.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_001388233.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_001388234.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_001388235.1	identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854
YP_001388236.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001388237.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_001388238.1	identified by match to protein family HMM PF00535
YP_001388239.1	identified by Glimmer3
YP_001388240.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420
YP_001388241.1	identified by match to protein family HMM PF01488; match to protein family HMM PF08501
YP_001388242.1	identified by match to protein family HMM PF04545
YP_001388243.1	identified by Glimmer3
YP_001388244.1	identified by match to protein family HMM PF01381
YP_001388245.1	identified by match to protein family HMM PF01381
YP_001388246.1	identified by Glimmer3
YP_001388248.1	identified by Glimmer3
YP_001388249.1	identified by match to protein family HMM PF01076
YP_001388250.1	identified by match to protein family HMM PF02534
YP_001388251.1	identified by match to protein family HMM PF01381
YP_001388252.1	identified by match to protein family HMM PF01510
YP_001388255.1	identified by Glimmer3
YP_001388256.1	identified by Glimmer3
YP_001388257.1	identified by Glimmer3
YP_001388258.1	identified by match to protein family HMM TIGR02271
YP_001388259.1	identified by match to protein family HMM TIGR02271
YP_001388260.1	identified by Glimmer3
YP_001388262.1	identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616
YP_001388264.1	identified by Glimmer3
YP_001388265.1	identified by match to protein family HMM PF00905
YP_001388266.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_001388267.1	identified by match to protein family HMM PF01136
YP_001388268.1	identified by match to protein family HMM PF01596
YP_001388269.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_001388270.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_001388271.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_001388272.1	identified by match to protein family HMM PF01475
YP_001388273.1	identified by match to protein family HMM PF06949
YP_001388274.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001388275.1	identified by match to protein family HMM PF06135
YP_001388276.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001388277.1	identified by match to protein family HMM PF01594
YP_001388280.1	identified by match to protein family HMM PF01592
YP_001388281.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001388282.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001388283.1	identified by match to protein family HMM PF00004
YP_001388284.1	identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856
YP_001388285.1	identified by match to protein family HMM PF03547
YP_001388286.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_001388287.1	identified by match to protein family HMM PF01206
YP_001388288.1	catalyzes the formation of L-proline from L-ornithine
YP_001388289.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001388292.1	identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857
YP_001388293.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001388294.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01326
YP_001388296.1	identified by match to protein family HMM PF00501
YP_001388297.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001388299.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550
YP_001388300.1	identified by match to protein family HMM PF00583
YP_001388304.1	identified by Glimmer3
YP_001388305.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001388306.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001388307.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001388308.1	identified by match to protein family HMM PF06738
YP_001388310.1	identified by match to protein family HMM PF02583
YP_001388311.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001388313.1	identified by Glimmer3
YP_001388314.1	identified by Glimmer3
YP_001388315.1	identified by Glimmer3
YP_001388317.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001388318.1	identified by match to protein family HMM PF01544
YP_001388319.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_001388320.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001388321.1	identified by match to protein family HMM PF05979
YP_001388322.1	identified by match to protein family HMM PF09335
YP_001388323.1	identified by match to protein family HMM PF09335
YP_001388324.1	identified by match to protein family HMM PF02754
YP_001388327.1	identified by match to protein family HMM PF00535
YP_001388328.1	identified by match to protein family HMM PF00581
YP_001388329.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001388330.1	identified by Glimmer3
YP_001388332.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001388334.1	identified by match to protein family HMM PF01156
YP_001388335.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_001388336.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex
YP_001388337.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex
YP_001388338.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex
YP_001388339.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex
YP_001388340.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex
YP_001388341.1	identified by match to protein family HMM PF01991
YP_001388342.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits
YP_001388343.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.
YP_001388345.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_001388347.1	identified by match to protein family HMM PF00882
YP_001388348.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001388349.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001388350.1	identified by Glimmer3
YP_001388351.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene
YP_001388352.1	makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene
YP_001388355.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937
YP_001388356.1	identified by match to protein family HMM PF07238
YP_001388357.1	identified by match to protein family HMM PF01656
YP_001388358.1	positive regulator of class III flagellar genes
YP_001388359.1	membrane protein involved in the flagellar export apparatus
YP_001388360.1	FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined
YP_001388361.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402
YP_001388362.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001388364.1	identified by match to protein family HMM PF00691
YP_001388365.1	identified by match to protein family HMM PF01618
YP_001388366.1	identified by match to protein family HMM PF06289
YP_001388367.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429
YP_001388368.1	identified by match to protein family HMM TIGR02530
YP_001388369.1	identified by match to protein family HMM PF03963
YP_001388370.1	identified by match to protein family HMM PF02120
YP_001388371.1	identified by match to protein family HMM TIGR02473
YP_001388372.1	identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_001388374.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001388375.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001388376.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_001388377.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001388378.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001388379.2	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001388381.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001388382.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001388385.1	identified by match to protein family HMM PF00614
YP_001388387.1	identified by Glimmer3
YP_001388388.1	identified by match to protein family HMM PF04892
YP_001388389.1	identified by match to protein family HMM PF01943
YP_001388390.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001388391.1	identified by match to protein family HMM PF03102; match to protein family HMM PF08666
YP_001388392.1	identified by match to protein family HMM PF02348; match to protein family HMM PF04101
YP_001388394.1	identified by match to protein family HMM PF05855
YP_001388396.1	identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031
YP_001388397.1	identified by match to protein family HMM PF02397
YP_001388398.1	identified by match to protein family HMM TIGR01007
YP_001388399.1	identified by match to protein family HMM PF02811
YP_001388400.1	identified by match to protein family HMM PF02706
YP_001388401.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_001388403.1	identified by Glimmer3
YP_001388405.1	identified by match to protein family HMM PF00015
YP_001388406.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001388409.1	identified by Glimmer3
YP_001388411.1	identified by match to protein family HMM PF00657
YP_001388413.1	identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719
YP_001388414.1	identified by match to protein family HMM PF00534
YP_001388415.1	identified by Glimmer3
YP_001388416.1	identified by match to protein family HMM PF00534
YP_001388418.1	identified by Glimmer3
YP_001388422.1	identified by match to protein family HMM PF00534
YP_001388423.1	identified by Glimmer3
YP_001388424.1	identified by match to protein family HMM PF04989
YP_001388425.1	identified by match to protein family HMM PF08241
YP_001388426.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370
YP_001388427.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_001388428.1	identified by match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484
YP_001388429.1	identified by match to protein family HMM PF04055
YP_001388430.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623
YP_001388431.1	identified by Glimmer3
YP_001388432.1	identified by match to protein family HMM PF03102; match to protein family HMM PF08666
YP_001388433.1	identified by match to protein family HMM PF02348
YP_001388434.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_001388435.1	undetermined role; similar to CarB protein but much smaller
YP_001388436.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001388437.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001388438.1	identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719
YP_001388439.1	identified by similarity to PIR:C97171
YP_001388440.1	identified by match to protein family HMM PF01973
YP_001388441.1	identified by match to protein family HMM PF00515; match to protein family HMM PF00535
YP_001388442.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001388443.1	identified by match to protein family HMM PF00669; match to protein family HMM PF00700
YP_001388445.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195
YP_001388446.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_001388448.1	identified by match to protein family HMM PF03646
YP_001388449.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_001388450.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001388451.1	identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550
YP_001388452.1	identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492
YP_001388453.1	identified by match to protein family HMM PF05130
YP_001388454.1	identified by match to protein family HMM PF04316
YP_001388455.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001388456.1	identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397
YP_001388457.1	identified by match to protein family HMM PF01584
YP_001388458.1	identified by match to protein family HMM PF00072
YP_001388459.1	identified by match to protein family HMM PF04509
YP_001388460.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194
YP_001388461.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_001388462.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01339
YP_001388463.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001388464.1	identified by match to protein family HMM PF01584
YP_001388465.1	identified by match to protein family HMM PF03961
YP_001388466.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830
YP_001388467.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001388468.1	identified by match to protein family HMM PF01063
YP_001388469.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001388471.1	identified by Glimmer3
YP_001388472.1	identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176
YP_001388473.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001388474.1	identified by Glimmer3
YP_001388475.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001388476.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_001388477.1	identified by match to protein family HMM PF01261
YP_001388478.1	identified by match to protein family HMM PF01436
YP_001388479.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001388481.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383
YP_001388482.1	identified by match to protein family HMM PF04309
YP_001388483.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001388484.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001388486.1	identified by match to protein family HMM PF00999
YP_001388488.1	identified by Glimmer3
YP_001388489.1	identified by match to protein family HMM PF01522
YP_001388490.1	identified by Glimmer3
YP_001388491.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_001388492.1	identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753
YP_001388493.1	identified by Glimmer3
YP_001388494.1	identified by similarity to GB:CAC13569.1
YP_001388495.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001388496.1	identified by match to protein family HMM PF00165; match to protein family HMM PF07883
YP_001388497.1	identified by match to protein family HMM PF02016
YP_001388498.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311
YP_001388499.1	identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_001388500.1	identified by match to protein family HMM PF01906
YP_001388501.1	identified by match to protein family HMM PF04892
YP_001388503.1	identified by match to protein family HMM PF00005
YP_001388504.1	identified by match to protein family HMM PF00392
YP_001388505.1	identified by match to protein family HMM PF04892
YP_001388506.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001388508.1	identified by match to protein family HMM PF02073
YP_001388509.1	identified by match to protein family HMM PF05504
YP_001388510.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_001388511.1	identified by match to protein family HMM PF03323
YP_001388512.1	identified by Glimmer3
YP_001388513.1	identified by Glimmer3
YP_001388514.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_001388515.1	identified by match to protein family HMM PF01522
YP_001388516.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_001388518.1	identified by Glimmer3
YP_001388519.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001388520.1	identified by match to protein family HMM PF00582
YP_001388521.1	identified by match to protein family HMM PF00037
YP_001388522.1	catalyzes the formation of glutamate from glutamine
YP_001388523.1	identified by match to protein family HMM PF06725
YP_001388525.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001388527.1	identified by match to protein family HMM PF00268
YP_001388531.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001388532.1	catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines
YP_001388533.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001388534.1	identified by match to protein family HMM PF00156
YP_001388535.1	identified by match to protein family HMM PF02698
YP_001388536.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03965
YP_001388537.1	identified by match to protein family HMM PF00005
YP_001388539.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_001388540.1	identified by Glimmer3
YP_001388541.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001388542.1	identified by match to protein family HMM PF00293
YP_001388543.1	identified by match to protein family HMM PF01475
YP_001388544.1	identified by Glimmer3
YP_001388545.1	identified by match to protein family HMM PF00704
YP_001388546.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_001388547.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221
YP_001388548.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001388549.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_001388550.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_001388551.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_001388552.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001388553.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797
YP_001388554.1	identified by match to protein family HMM PF00258; match to protein family HMM PF00753
YP_001388555.1	identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001388556.1	identified by match to protein family HMM PF00665
YP_001388557.3	identified by match to protein family HMM PF03613
YP_001388558.1	identified by match to protein family HMM PF06115
YP_001388559.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001388560.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001388562.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001388563.1	identified by match to protein family HMM PF00941
YP_001388564.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738
YP_001388566.1	identified by match to protein family HMM PF00999
YP_001388567.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001388568.1	identified by Glimmer3
YP_001388569.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_001388570.1	identified by match to protein family HMM PF00005
YP_001388571.1	identified by match to protein family HMM PF02463
YP_001388572.1	identified by similarity to GB:AAS43498.1
YP_001388573.1	identified by Glimmer3
YP_001388574.1	identified by Glimmer3
YP_001388575.1	identified by Glimmer3
YP_001388576.1	identified by Glimmer3
YP_001388577.1	identified by Glimmer3
YP_001388578.1	identified by Glimmer3
YP_001388579.1	identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675
YP_001388580.1	identified by similarity to GB:BAD50088.1
YP_001388581.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001388584.1	identified by similarity to GB:BAC57539.1
YP_001388585.1	identified by match to protein family HMM TIGR02937
YP_001388586.1	identified by Glimmer3
YP_001388587.1	identified by match to protein family HMM TIGR01446
YP_001388588.1	identified by Glimmer3
YP_001388589.1	identified by match to protein family HMM TIGR01764
YP_001388590.1	identified by similarity to GB:CAJ70012.1
YP_001388591.1	identified by match to protein family HMM PF01381
YP_001388592.1	identified by match to protein family HMM PF00589
YP_001388593.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_001388594.1	identified by Glimmer3
YP_001388595.1	identified by match to protein family HMM PF00884
YP_001388596.1	identified by match to protein family HMM PF01925
YP_001388597.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001388598.1	identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506
YP_001388599.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001388600.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_001388601.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_001388602.1	identified by match to protein family HMM PF00753
YP_001388603.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_001388605.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001388606.1	involved in de novo purine biosynthesis
YP_001388607.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_001388608.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001388609.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001388610.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001388611.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_001388612.1	identified by Glimmer3
YP_001388613.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311
YP_001388614.1	Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases
YP_001388615.1	in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS
YP_001388616.1	with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase
YP_001388617.1	identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316
YP_001388618.1	catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position
YP_001388619.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001388620.1	catalyzes the formation of pyruvate from 2,3-diaminopropionate
YP_001388621.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001388622.1	identified by match to protein family HMM TIGR03172
YP_001388623.1	identified by match to protein family HMM TIGR03310
YP_001388624.1	identified by match to protein family HMM TIGR03309
YP_001388625.1	identified by match to protein family HMM PF02625
YP_001388627.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_001388628.1	identified by match to protein family HMM PF00005
YP_001388629.1	identified by match to protein family HMM PF01497
YP_001388630.1	identified by Glimmer3
YP_001388631.1	identified by match to protein family HMM PF00657
YP_001388632.1	identified by match to protein family HMM PF02698
YP_001388633.1	identified by match to protein family HMM PF00860
YP_001388634.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001388636.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001388638.1	identified by match to protein family HMM PF01546
YP_001388640.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001388641.1	identified by match to protein family HMM PF01910
YP_001388642.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001388643.1	identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134
YP_001388644.1	identified by match to protein family HMM PF04456
YP_001388647.1	identified by match to protein family HMM PF00005
YP_001388648.1	identified by match to protein family HMM PF00392
YP_001388650.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_001388651.1	identified by match to protein family HMM PF00037
YP_001388652.1	identified by match to protein family HMM PF00027
YP_001388653.1	identified by match to protein family HMM PF07486
YP_001388654.1	identified by Glimmer3
YP_001388655.1	identified by match to protein family HMM PF07883
YP_001388656.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_001388657.1	identified by match to protein family HMM PF03009
YP_001388659.1	identified by match to protein family HMM PF00282
YP_001388661.1	identified by Glimmer3
YP_001388663.1	identified by match to protein family HMM PF02591
YP_001388664.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_001388665.1	identified by match to protein family HMM PF04816
YP_001388667.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_001388668.1	synthesizes RNA primers at the replication forks
YP_001388669.1	dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001388670.1	identified by match to protein family HMM TIGR02906
YP_001388671.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001388672.1	identified by match to protein family HMM PF00571; match to protein family HMM PF08279
YP_001388673.1	identified by match to protein family HMM PF00627
YP_001388674.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001388675.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_001388676.1	identified by match to protein family HMM PF01219; match to protein family HMM PF01569
YP_001388677.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_001388678.1	identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277
YP_001388679.1	identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876
YP_001388680.1	identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856
YP_001388681.1	identified by match to protein family HMM PF02637
YP_001388682.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001388683.1	identified by match to protein family HMM PF01230
YP_001388684.1	identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_001388685.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001388686.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001388687.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001388688.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001388689.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001388690.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001388691.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001388692.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001388694.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_001388695.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_001388696.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001388697.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001388698.1	identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360
YP_001388700.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690
YP_001388703.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475
YP_001388704.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001388705.1	Selenoprotein. identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476
YP_001388706.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_001388707.1	identified by match to protein family HMM PF00768
YP_001388708.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_001388709.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_001388710.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_001388711.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488
YP_001388712.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_001388713.1	identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_001388714.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001388715.1	involved in the peptidyltransferase reaction during translation
YP_001388716.1	identified by match to protein family HMM PF04327
YP_001388717.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_001388718.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001388720.1	identified by match to protein family HMM PF04055
YP_001388721.1	identified by match to protein family HMM PF02163
YP_001388722.1	identified by match to protein family HMM PF01551
YP_001388723.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_001388724.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001388725.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_001388726.1	blocks the formation of polar Z-ring septums
YP_001388727.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001388728.1	identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426
YP_001388729.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001388730.1	functions in MreBCD complex in some organisms
YP_001388731.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001388732.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001388736.1	identified by match to protein family HMM PF02567
YP_001388737.1	identified by match to protein family HMM PF01842
YP_001388738.1	identified by Glimmer3
YP_001388739.1	identified by match to protein family HMM PF01464
YP_001388740.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001388741.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001388742.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001388743.1	identified by match to protein family HMM PF01520; match to protein family HMM PF08239
YP_001388748.1	identified by Glimmer3
YP_001388749.1	identified by Glimmer3
YP_001388752.1	identified by Glimmer3
YP_001388756.1	identified by match to protein family HMM PF00656
YP_001388759.1	identified by Glimmer3
YP_001388760.1	identified by Glimmer3
YP_001388761.1	identified by Glimmer3
YP_001388767.1	identified by Glimmer3
YP_001388772.1	identified by match to protein family HMM PF01381
YP_001388773.1	identified by match to protein family HMM PF01381
YP_001388774.1	identified by Glimmer3
YP_001388775.1	identified by match to protein family HMM PF03062
YP_001388776.1	identified by Glimmer3
YP_001388777.1	identified by match to protein family HMM PF00269
YP_001388778.1	identified by Glimmer3
YP_001388779.1	identified by Glimmer3
YP_001388780.1	identified by Glimmer3
YP_001388781.1	identified by Glimmer3
YP_001388782.1	identified by match to protein family HMM PF04246
YP_001388783.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001388784.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001388785.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001388786.1	identified by match to protein family HMM PF00753
YP_001388787.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001388788.1	identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001388789.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001388790.1	identified by match to protein family HMM PF01368
YP_001388791.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001388792.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001388793.1	identified by match to protein family HMM PF04055
YP_001388794.1	identified by Glimmer3
YP_001388796.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001388797.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001388798.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001388799.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001388800.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001388802.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_001388803.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257
YP_001388804.1	identified by match to protein family HMM PF03130
YP_001388805.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001388806.1	identified by match to protein family HMM PF01909
YP_001388808.1	identified by match to protein family HMM PF00301
YP_001388809.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156
YP_001388810.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_001388811.1	identified by match to protein family HMM TIGR02832
YP_001388812.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001388813.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_001388814.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_001388815.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_001388816.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_001388817.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_001388818.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886
YP_001388820.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884
YP_001388821.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_001388822.1	identified by match to protein family HMM PF02397
YP_001388823.1	identified by match to protein family HMM PF01943
YP_001388824.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_001388825.1	identified by match to protein family HMM PF00534
YP_001388826.1	identified by match to protein family HMM PF00534
YP_001388827.1	identified by match to protein family HMM PF04932
YP_001388828.1	identified by match to protein family HMM PF00534
YP_001388829.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_001388830.1	identified by match to protein family HMM PF00534
YP_001388831.1	identified by Glimmer3
YP_001388833.1	identified by match to protein family HMM PF00560
YP_001388834.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943
YP_001388835.1	identified by match to protein family HMM PF00132
YP_001388836.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001388837.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_001388838.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001388839.1	identified by match to protein family HMM PF01520; match to protein family HMM PF07495
YP_001388840.1	identified by match to protein family HMM PF01520; match to protein family HMM PF07495
YP_001388841.1	identified by Glimmer3
YP_001388842.1	identified by match to protein family HMM PF01832; match to protein family HMM PF07495
YP_001388843.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001388844.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001388845.1	identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001388846.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001388847.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889
YP_001388848.1	identified by Glimmer3
YP_001388849.1	identified by match to protein family HMM PF01515
YP_001388850.1	identified by match to protein family HMM PF01070
YP_001388851.1	identified by match to protein family HMM PF04463
YP_001388852.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_001388853.1	identified by match to protein family HMM PF01136
YP_001388855.1	identified by Glimmer3
YP_001388856.1	identified by Glimmer3
YP_001388857.1	identified by Glimmer3
YP_001388858.1	identified by match to protein family HMM PF05164
YP_001388859.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001388860.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001388861.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_001388862.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_001388863.1	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
YP_001388864.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001388865.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_001388866.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_001388867.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001388868.1	identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834
YP_001388871.1	identified by match to protein family HMM PF00005
YP_001388872.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001388873.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001388875.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001388876.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001388877.1	identified by match to protein family HMM PF00528
YP_001388878.1	identified by match to protein family HMM PF00528
YP_001388879.1	identified by match to protein family HMM PF00496
YP_001388880.1	identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296
YP_001388881.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001388882.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001388883.1	identified by match to protein family HMM PF00155
YP_001388884.1	identified by match to protein family HMM PF00132; match to protein family HMM PF08503
YP_001388885.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001388887.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_001388891.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_001388892.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001388893.1	identified by match to protein family HMM PF00583
YP_001388894.1	identified by match to protein family HMM PF00005
YP_001388897.1	identified by match to protein family HMM PF09084
YP_001388899.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001388900.1	identified by match to protein family HMM PF00005
YP_001388901.1	identified by match to protein family HMM PF00528
YP_001388902.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720
YP_001388903.1	identified by match to protein family HMM PF01841
YP_001388904.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001388905.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_001388906.1	identified by match to protein family HMM PF06177
YP_001388907.1	identified by match to protein family HMM PF01613
YP_001388908.1	identified by match to protein family HMM PF01471; match to protein family HMM PF03734
YP_001388910.1	identified by match to protein family HMM PF06865
YP_001388911.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001388912.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901
YP_001388913.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494
YP_001388914.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001388915.1	identified by match to protein family HMM PF00533
YP_001388916.1	identified by Glimmer3
YP_001388917.1	identified by match to protein family HMM PF00092
YP_001388918.1	identified by match to protein family HMM PF07728
YP_001388921.1	identified by match to protein family HMM PF00037
YP_001388924.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001388925.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001388926.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001388927.1	identified by match to protein family HMM PF01012
YP_001388928.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001388929.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001388930.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001388931.1	identified by match to protein family HMM PF00378
YP_001388932.1	identified by Glimmer3
YP_001388933.1	identified by match to protein family HMM PF01541
YP_001388934.1	identified by match to protein family HMM PF00860
YP_001388935.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001388936.1	identified by Glimmer3
YP_001388937.1	identified by Glimmer3
YP_001388938.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001388939.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001388941.1	identified by match to protein family HMM PF03009
YP_001388942.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_001388943.1	identified by match to protein family HMM PF00301; match to protein family HMM PF02915
YP_001388944.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493
YP_001388945.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_001388947.1	identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731
YP_001388949.1	identified by match to protein family HMM PF01475
YP_001388950.1	identified by match to protein family HMM PF01547
YP_001388952.1	identified by match to protein family HMM PF08279
YP_001388954.1	identified by Glimmer3
YP_001388955.1	identified by Glimmer3
YP_001388956.1	identified by match to protein family HMM PF02517
YP_001388957.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001388958.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_001388959.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902
YP_001388960.1	binds and unfolds substrates as part of the ClpXP protease
YP_001388961.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001388962.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001388963.1	identified by match to protein family HMM PF01261
YP_001388965.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001388966.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_001388967.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_001388968.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001388969.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857
YP_001388970.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_001388971.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001388972.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001388974.1	identified by match to protein family HMM PF06050
YP_001388975.1	identified by match to protein family HMM PF06050
YP_001388977.1	identified by match to protein family HMM PF00005
YP_001388978.1	identified by similarity to GB:CAJ69248.1
YP_001388979.1	identified by similarity to GB:CAJ69249.1
YP_001388984.1	identified by match to protein family HMM PF03773
YP_001388985.1	identified by Glimmer3
YP_001388986.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_001388987.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001388989.1	identified by similarity to GB:AAM23887.1
YP_001388990.1	identified by match to protein family HMM PF00496
YP_001388991.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001388992.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001388993.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001388994.1	identified by match to protein family HMM PF00375
YP_001388996.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001388997.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_001388998.1	identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531
YP_001388999.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001389000.1	identified by match to protein family HMM PF01464
YP_001389001.1	identified by match to protein family HMM PF07495
YP_001389002.1	identified by Glimmer3
YP_001389003.1	identified by match to protein family HMM PF02639
YP_001389004.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001389006.1	identified by match to protein family HMM PF00440
YP_001389007.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001389008.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001389010.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001389011.1	identified by match to protein family HMM PF01012
YP_001389012.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001389013.1	identified by match to protein family HMM PF06050
YP_001389014.1	identified by match to protein family HMM PF06050
YP_001389015.1	identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241
YP_001389016.1	identified by match to protein family HMM PF02515
YP_001389017.1	identified by match to protein family HMM PF00501
YP_001389018.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_001389019.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001389020.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001389021.1	identified by match to protein family HMM PF01171
YP_001389022.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001389023.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001389024.1	identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906
YP_001389025.1	identified by match to protein family HMM PF09335
YP_001389026.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_001389027.1	identified by match to protein family HMM PF00730; match to protein family HMM PF07934
YP_001389028.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001389029.1	identified by match to protein family HMM PF00175
YP_001389030.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001389031.1	identified by match to protein family HMM PF00005
YP_001389032.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_001389033.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694
YP_001389034.1	identified by match to protein family HMM PF02554
YP_001389035.1	identified by match to protein family HMM PF05193; match to protein family HMM PF08367
YP_001389036.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001389037.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001389038.1	identified by match to protein family HMM PF05866
YP_001389040.1	identified by match to protein family HMM PF07992
YP_001389043.1	identified by match to protein family HMM PF01297
YP_001389044.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277
YP_001389045.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_001389046.1	identified by match to protein family HMM PF00814
YP_001389047.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_001389048.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001389050.1	identified by match to protein family HMM PF04326
YP_001389052.1	identified by Glimmer3
YP_001389053.1	identified by match to protein family HMM PF01569
YP_001389054.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503
YP_001389055.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_001389056.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001389057.1	identified by Glimmer3
YP_001389058.1	identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332
YP_001389060.1	identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205
YP_001389061.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_001389062.1	identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657
YP_001389063.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001389064.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001389067.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001389068.1	divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases
YP_001389069.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001389070.1	identified by match to protein family HMM PF01541
YP_001389071.1	identified by Glimmer3
YP_001389072.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815
YP_001389073.2	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389074.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389076.1	identified by match to protein family HMM PF00005
YP_001389079.1	identified by match to protein family HMM PF05913
YP_001389080.1	identified by match to protein family HMM PF01869
YP_001389081.1	identified by match to protein family HMM PF02255
YP_001389082.1	identified by match to protein family HMM PF02302
YP_001389083.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728
YP_001389084.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_001389085.1	identified by match to protein family HMM PF02056
YP_001389086.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001389087.1	identified by match to protein family HMM PF00589
YP_001389088.1	identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330
YP_001389091.1	identified by match to protein family HMM PF05368
YP_001389092.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_001389094.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00248
YP_001389095.1	identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064
YP_001389096.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001389097.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001389098.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_001389099.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_001389100.1	identified by match to protein family HMM PF03668
YP_001389101.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001389102.1	identified by match to protein family HMM PF02811
YP_001389103.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001389104.1	identified by match to protein family HMM PF04307
YP_001389105.1	identified by match to protein family HMM PF01336; match to protein family HMM PF01966
YP_001389106.1	identified by match to protein family HMM PF00905
YP_001389107.1	identified by match to protein family HMM PF01098
YP_001389108.1	identified by match to protein family HMM PF00498
YP_001389109.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001389110.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001389112.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_001389113.1	identified by match to protein family HMM PF02687
YP_001389114.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673
YP_001389115.1	identified by match to protein family HMM PF02588
YP_001389116.1	identified by Glimmer3
YP_001389117.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001389118.1	identified by match to protein family HMM PF00456
YP_001389119.1	identified by match to protein family HMM PF02452
YP_001389121.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001389123.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_001389124.1	identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556
YP_001389127.1	identified by match to protein family HMM PF03553; match to protein family HMM PF06808
YP_001389128.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_001389130.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001389131.1	identified by match to protein family HMM PF00375
YP_001389132.1	identified by match to protein family HMM PF01569
YP_001389134.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_001389135.1	identified by match to protein family HMM PF00923
YP_001389136.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001389137.1	catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate
YP_001389138.1	identified by match to protein family HMM PF03829
YP_001389139.1	identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825
YP_001389140.1	identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821
YP_001389141.1	identified by match to protein family HMM PF06923
YP_001389142.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001389143.1	identified by match to protein family HMM PF04198
YP_001389144.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001389145.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_001389146.1	identified by match to protein family HMM PF00037
YP_001389148.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001389149.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_001389150.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001389152.1	identified by match to protein family HMM PF07949
YP_001389153.1	identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_001389154.1	identified by match to protein family HMM PF07486
YP_001389155.1	identified by match to protein family HMM PF01134; match to protein family HMM PF07992
YP_001389156.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_001389157.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975
YP_001389158.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001389160.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_001389161.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_001389162.1	identified by match to protein family HMM PF00515
YP_001389163.1	identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723
YP_001389164.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_001389165.1	identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883
YP_001389166.1	identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_001389167.1	forms a direct contact with the tRNA during translation
YP_001389168.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001389169.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001389170.1	identified by match to protein family HMM PF02361
YP_001389171.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_001389172.1	with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene
YP_001389173.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001389174.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001389175.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001389176.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001389177.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001389178.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001389179.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001389181.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_001389182.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001389183.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001389184.1	late assembly protein
YP_001389185.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001389186.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001389187.1	binds 5S rRNA along with protein L5 and L25
YP_001389188.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001389189.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001389190.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001389191.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001389192.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001389193.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001389194.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001389195.1	one of the stabilizing components for the large ribosomal subunit
YP_001389196.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001389197.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001389198.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001389199.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001389200.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001389201.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001389202.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001389203.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001389204.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001389205.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001389206.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001389207.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001389208.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001389209.1	identified by match to protein family HMM PF01248
YP_001389210.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001389211.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001389212.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001389213.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001389214.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001389215.1	binds directly to 23S ribosomal RNA
YP_001389216.1	Modulates Rho-dependent transcription termination
YP_001389217.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001389218.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001389219.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001389220.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001389221.1	identified by match to protein family HMM PF05991
YP_001389222.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_001389223.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_001389224.1	identified by match to protein family HMM PF00636
YP_001389225.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001389226.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127
YP_001389227.1	identified by match to protein family HMM PF03129; match to protein family HMM PF04073
YP_001389228.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001389229.1	identified by match to protein family HMM PF01850; match to protein family HMM PF01938
YP_001389231.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001389232.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001389233.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001389234.1	identified by match to protein family HMM PF00217
YP_001389235.1	identified by match to protein family HMM PF02151
YP_001389236.1	identified by match to protein family HMM PF05848
YP_001389238.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001389239.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001389240.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001389241.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001389242.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001389244.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_001389245.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001389246.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001389247.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001389248.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_001389249.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_001389250.1	identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865
YP_001389251.1	identified by match to protein family HMM PF00575
YP_001389252.1	identified by match to protein family HMM PF04977
YP_001389253.1	identified by match to protein family HMM TIGR02893
YP_001389254.1	identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892
YP_001389255.1	identified by match to protein family HMM PF01479
YP_001389256.1	identified by match to protein family HMM PF00216
YP_001389257.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444
YP_001389258.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_001389259.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851
YP_001389260.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_001389261.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_001389262.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001389263.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_001389264.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001389265.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001389266.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001389267.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001389268.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_001389269.1	identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743
YP_001389270.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001389272.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02906
YP_001389273.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001389275.1	catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate
YP_001389276.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_001389279.1	identified by match to protein family HMM PF04055
YP_001389280.1	identified by match to protein family HMM PF00015; match to protein family HMM PF07700
YP_001389281.1	identified by match to protein family HMM PF01381
YP_001389283.1	identified by match to protein family HMM PF00160
YP_001389284.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001389285.1	identified by match to protein family HMM PF00120
YP_001389287.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001389288.1	identified by match to protein family HMM PF00753
YP_001389290.1	identified by match to protein family HMM PF02810
YP_001389291.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001389292.1	identified by match to protein family HMM PF07690
YP_001389293.1	identified by match to protein family HMM PF03358
YP_001389294.1	identified by match to protein family HMM PF00440; match to protein family HMM PF02796
YP_001389295.1	identified by match to protein family HMM PF00165
YP_001389296.1	identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500
YP_001389297.1	identified by match to protein family HMM PF00881
YP_001389299.1	identified by match to protein family HMM PF00037; match to protein family HMM PF04055
YP_001389301.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_001389302.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001389303.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_001389304.1	identified by match to protein family HMM PF00474
YP_001389305.1	identified by match to protein family HMM PF00534
YP_001389306.1	identified by match to protein family HMM PF02811
YP_001389307.1	identified by match to protein family HMM PF08761
YP_001389308.1	identified by match to protein family HMM PF04657
YP_001389309.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001389310.1	identified by match to protein family HMM PF00082
YP_001389311.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001389312.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001389313.1	identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513
YP_001389314.1	identified by match to protein family HMM TIGR00515
YP_001389315.1	identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514
YP_001389316.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001389317.1	identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531
YP_001389318.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001389319.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001389320.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001389321.1	identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151
YP_001389322.1	identified by match to protein family HMM PF00550
YP_001389323.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747
YP_001389324.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03965
YP_001389325.1	identified by match to protein family HMM PF03060
YP_001389326.1	identified by match to protein family HMM PF01551
YP_001389327.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_001389328.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_001389332.1	identified by match to protein family HMM PF03618
YP_001389333.1	identified by match to protein family HMM PF02629
YP_001389334.1	identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275
YP_001389335.1	identified by match to protein family HMM PF01643
YP_001389337.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001389338.1	identified by match to protein family HMM PF07992
YP_001389339.1	identified by Glimmer3
YP_001389340.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001389341.1	unwinds double stranded DNA
YP_001389342.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903
YP_001389343.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001389344.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_001389347.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001389348.1	identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621
YP_001389349.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001389350.1	identified by match to protein family HMM PF06050
YP_001389351.1	identified by match to protein family HMM PF06107
YP_001389352.1	identified by match to protein family HMM PF00924
YP_001389354.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977
YP_001389355.1	identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872
YP_001389356.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_001389357.1	identified by Glimmer3
YP_001389359.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001389360.1	identified by match to protein family HMM PF01656
YP_001389361.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001389362.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001389363.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001389364.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001389365.1	identified by match to protein family HMM PF01424
YP_001389366.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001389367.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_001389368.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_001389369.1	in Escherichia coli transcription of this gene is enhanced by polyamines