-- dump date 20140619_043144 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001385963.1 153935412 5400372 1..1347 1 NC_009698.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1347 dnaA 5400372 dnaA Clostridium botulinum A str. Hall chromosomal replication initiation protein YP_001385963.1 1 D 441771 CDS YP_001385964.1 153937046 5400292 1610..2713 1 NC_009698.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2713 dnaN 5400292 dnaN Clostridium botulinum A str. Hall DNA polymerase III subunit beta YP_001385964.1 1610 D 441771 CDS YP_001385965.1 153936289 5400522 2732..2938 1 NC_009698.1 identified by match to protein family HMM PF01479; match to protein family HMM TIGR02988; S4 domain-containing protein 2938 5400522 CLC_0003 Clostridium botulinum A str. Hall S4 domain-containing protein YP_001385965.1 2732 D 441771 CDS YP_001385966.1 153935303 5401795 3007..4101 1 NC_009698.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4101 recF 5401795 recF Clostridium botulinum A str. Hall recombination protein F YP_001385966.1 3007 D 441771 CDS YP_001385967.1 153937594 5398732 4122..4385 1 NC_009698.1 hypothetical protein 4385 5398732 CLC_0005 Clostridium botulinum A str. Hall hypothetical protein YP_001385967.1 4122 D 441771 CDS YP_001385968.1 153936801 5399484 4403..6316 1 NC_009698.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6316 gyrB 5399484 gyrB Clostridium botulinum A str. Hall DNA gyrase subunit B YP_001385968.1 4403 D 441771 CDS YP_001385969.1 153935617 5400142 6342..8867 1 NC_009698.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 8867 gyrA 5400142 gyrA Clostridium botulinum A str. Hall DNA gyrase subunit A YP_001385969.1 6342 D 441771 CDS YP_001385970.1 153934873 5398406 14442..14894 1 NC_009698.1 hypothetical protein 14894 5398406 CLC_0017 Clostridium botulinum A str. Hall hypothetical protein YP_001385970.1 14442 D 441771 CDS YP_001385971.1 153937121 5399287 14910..15431 1 NC_009698.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279; transcriptional regulator 15431 5399287 CLC_0018 Clostridium botulinum A str. Hall transcriptional regulator YP_001385971.1 14910 D 441771 CDS YP_001385972.1 153936038 5399101 15433..16596 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015; (Fe-S)-binding protein 16596 5399101 CLC_0019 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001385972.1 15433 D 441771 CDS YP_001385973.1 153937022 5399006 16601..19282 1 NC_009698.1 identified by match to protein family HMM PF03699; hypothetical protein 19282 5399006 CLC_0020 Clostridium botulinum A str. Hall hypothetical protein YP_001385973.1 16601 D 441771 CDS YP_001385974.1 153937535 5399859 19419..20195 1 NC_009698.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 20195 5399859 CLC_0021 Clostridium botulinum A str. Hall ErfK/YbiS/YcfS/YnhG family protein YP_001385974.1 19419 D 441771 CDS YP_001385975.1 153935047 5400120 20220..21617 1 NC_009698.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD dependent 21617 5400120 CLC_0022 Clostridium botulinum A str. Hall oxidoreductase, FAD dependent YP_001385975.1 20220 D 441771 CDS YP_001385976.1 153934720 5398996 21634..21987 1 NC_009698.1 identified by match to protein family HMM PF07892; hypothetical protein 21987 5398996 CLC_0023 Clostridium botulinum A str. Hall hypothetical protein YP_001385976.1 21634 D 441771 CDS YP_001385977.1 153937253 5399291 22357..23637 1 NC_009698.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 23637 serS-1 5399291 serS-1 Clostridium botulinum A str. Hall seryl-tRNA synthetase YP_001385977.1 22357 D 441771 CDS YP_001385979.1 153936471 5399488 26616..26978 1 NC_009698.1 identified by Glimmer3; hypothetical protein 26978 5399488 CLC_0037 Clostridium botulinum A str. Hall hypothetical protein YP_001385979.1 26616 D 441771 CDS YP_001385980.1 153936191 5400988 27051..27899 1 NC_009698.1 identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein 27899 5400988 CLC_0038 Clostridium botulinum A str. Hall antibiotic ABC transporter ATP-binding protein YP_001385980.1 27051 D 441771 CDS YP_001385981.1 153936228 5398932 27908..28741 1 NC_009698.1 hypothetical protein 28741 5398932 CLC_0039 Clostridium botulinum A str. Hall hypothetical protein YP_001385981.1 27908 D 441771 CDS YP_001385982.1 153935706 5401022 28753..29556 1 NC_009698.1 hypothetical protein 29556 5401022 CLC_0040 Clostridium botulinum A str. Hall hypothetical protein YP_001385982.1 28753 D 441771 CDS YP_001385983.1 153934746 5398944 29573..30385 1 NC_009698.1 hypothetical protein 30385 5398944 CLC_0041 Clostridium botulinum A str. Hall hypothetical protein YP_001385983.1 29573 D 441771 CDS YP_001385984.1 153937664 5401023 complement(30625..31512) 1 NC_009698.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 31512 psd-2 5401023 psd-2 Clostridium botulinum A str. Hall phosphatidylserine decarboxylase YP_001385984.1 30625 R 441771 CDS YP_001385985.1 153937271 5401193 complement(31615..33213) 1 NC_009698.1 identified by match to protein family HMM PF01163; match to protein family HMM PF03109; hypothetical protein 33213 5401193 CLC_0043 Clostridium botulinum A str. Hall hypothetical protein YP_001385985.1 31615 R 441771 CDS YP_001385986.1 153934830 5401659 complement(33289..33609) 1 NC_009698.1 hypothetical protein 33609 5401659 CLC_0044 Clostridium botulinum A str. Hall hypothetical protein YP_001385986.1 33289 R 441771 CDS YP_001385987.1 153935787 5398815 34004..35542 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sensory box sigma-54 dependent transcriptional regulator 35542 5398815 CLC_0046 Clostridium botulinum A str. Hall sensory box sigma-54 dependent transcriptional regulator YP_001385987.1 34004 D 441771 CDS YP_001385988.1 153937734 5398407 35702..36904 1 NC_009698.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 36904 megL 5398407 megL Clostridium botulinum A str. Hall methionine gamma-lyase YP_001385988.1 35702 D 441771 CDS YP_001385989.1 153937691 5400541 37028..37465 1 NC_009698.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 37465 5400541 CLC_0048 Clostridium botulinum A str. Hall cytidine/deoxycytidylate deaminase YP_001385989.1 37028 D 441771 CDS YP_001385990.1 153935315 5400573 38110..39735 1 NC_009698.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 39735 dnaX 5400573 dnaX Clostridium botulinum A str. Hall DNA polymerase III subunits gamma and tau YP_001385990.1 38110 D 441771 CDS YP_001385991.1 153934643 5400028 39800..40141 1 NC_009698.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 40141 5400028 CLC_0052 Clostridium botulinum A str. Hall hypothetical protein YP_001385991.1 39800 D 441771 CDS YP_001385992.1 153937733 5400973 40174..40770 1 NC_009698.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 40770 recR 5400973 recR Clostridium botulinum A str. Hall recombination protein RecR YP_001385992.1 40174 D 441771 CDS YP_001385993.1 153936595 5400768 40827..41090 1 NC_009698.1 hypothetical protein 41090 5400768 CLC_0054 Clostridium botulinum A str. Hall hypothetical protein YP_001385993.1 40827 D 441771 CDS YP_001385994.1 153935371 5401699 41240..41500 1 NC_009698.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862; sigma-K factor processing regulatory protein BofA 41500 bofA 5401699 bofA Clostridium botulinum A str. Hall sigma-K factor processing regulatory protein BofA YP_001385994.1 41240 D 441771 CDS YP_001385995.1 153937461 5400775 41651..42343 1 NC_009698.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 42343 sfsA 5400775 sfsA Clostridium botulinum A str. Hall sugar fermentation stimulation protein A YP_001385995.1 41651 D 441771 CDS YP_001385996.1 153936479 5398793 42399..42887 1 NC_009698.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 42887 5398793 CLC_0057 Clostridium botulinum A str. Hall NUDIX family hydrolase YP_001385996.1 42399 D 441771 CDS YP_001385997.1 153935104 5398445 43005..43727 1 NC_009698.1 hypothetical protein 43727 5398445 CLC_0058 Clostridium botulinum A str. Hall hypothetical protein YP_001385997.1 43005 D 441771 CDS YP_001385998.1 153934545 5400339 43861..44649 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 44649 5400339 CLC_0059 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001385998.1 43861 D 441771 CDS YP_001385999.1 153937588 5400900 44668..44829 1 NC_009698.1 hypothetical protein 44829 5400900 CLC_0060 Clostridium botulinum A str. Hall hypothetical protein YP_001385999.1 44668 D 441771 CDS YP_001386000.1 153935856 5399274 45212..45916 1 NC_009698.1 identified by match to protein family HMM PF00899; ThiF domain-containing protein 45916 5399274 CLC_0061 Clostridium botulinum A str. Hall ThiF domain-containing protein YP_001386000.1 45212 D 441771 CDS YP_001386001.1 153935425 5398870 45999..47108 1 NC_009698.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 47108 5398870 CLC_0062 Clostridium botulinum A str. Hall major facilitator superfamily protein YP_001386001.1 45999 D 441771 CDS YP_001386002.1 153934499 5400135 47137..48081 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 48081 5400135 CLC_0063 Clostridium botulinum A str. Hall acetyltransferase YP_001386002.1 47137 D 441771 CDS YP_001386003.1 153937546 5400559 complement(53636..54232) 1 NC_009698.1 identified by match to protein family HMM PF03167; uracil-DNA glycosylase 54232 5400559 CLC_0071 Clostridium botulinum A str. Hall uracil-DNA glycosylase YP_001386003.1 53636 R 441771 CDS YP_001386004.1 153934922 5401453 60394..60957 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 60957 5401453 CLC_0079 Clostridium botulinum A str. Hall RNA polymerase factor sigma-70 YP_001386004.1 60394 D 441771 CDS YP_001386005.1 153934549 5399355 60954..62396 1 NC_009698.1 hypothetical protein 62396 5399355 CLC_0080 Clostridium botulinum A str. Hall hypothetical protein YP_001386005.1 60954 D 441771 CDS YP_001386006.1 153936847 5400743 68058..68801 1 NC_009698.1 identified by match to protein family HMM PF00639; peptidil-prolyl isomerase 68801 5400743 CLC_0088 Clostridium botulinum A str. Hall peptidil-prolyl isomerase YP_001386006.1 68058 D 441771 CDS YP_001386007.1 153935622 5401535 74540..75283 1 NC_009698.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 75283 5401535 CLC_0094 Clostridium botulinum A str. Hall NAD-dependent deacetylase YP_001386007.1 74540 D 441771 CDS YP_001386008.1 153935897 5401783 complement(75469..76377) 1 NC_009698.1 identified by match to protein family HMM PF02016; LD-carboxypeptidase 76377 5401783 CLC_0096 Clostridium botulinum A str. Hall LD-carboxypeptidase YP_001386008.1 75469 R 441771 CDS YP_001386009.1 153937176 5399340 complement(76413..77354) 1 NC_009698.1 identified by match to protein family HMM PF01544; CorA family protein 77354 5399340 CLC_0097 Clostridium botulinum A str. Hall CorA family protein YP_001386009.1 76413 R 441771 CDS YP_001386010.1 153936188 5399718 77719..78222 1 NC_009698.1 hypothetical protein 78222 5399718 CLC_0098 Clostridium botulinum A str. Hall hypothetical protein YP_001386010.1 77719 D 441771 CDS YP_001386011.1 153935414 5401019 79642..79854 1 NC_009698.1 csfB protein-like protein 79854 5401019 CLC_0100 Clostridium botulinum A str. Hall csfB protein-like protein YP_001386011.1 79642 D 441771 CDS YP_001386012.1 153935270 5398393 79833..81281 1 NC_009698.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711; Orn/Lys/Arg decarboxylase 81281 5398393 CLC_0101 Clostridium botulinum A str. Hall Orn/Lys/Arg decarboxylase YP_001386012.1 79833 D 441771 CDS YP_001386013.1 153937766 5400294 81305..82000 1 NC_009698.1 thymidylate kinase 82000 5400294 CLC_0102 Clostridium botulinum A str. Hall thymidylate kinase YP_001386013.1 81305 D 441771 CDS YP_001386014.1 153935075 5399203 82081..82410 1 NC_009698.1 identified by match to protein family HMM PF06153; hypothetical protein 82410 5399203 CLC_0103 Clostridium botulinum A str. Hall hypothetical protein YP_001386014.1 82081 D 441771 CDS YP_001386015.1 153935866 5401578 82428..83372 1 NC_009698.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 83372 5401578 CLC_0104 Clostridium botulinum A str. Hall DNA polymerase III subunit delta' YP_001386015.1 82428 D 441771 CDS YP_001386016.1 153935087 5399661 83374..84288 1 NC_009698.1 identified by match to protein family HMM PF04468; PSP1 domain-containing protein 84288 5399661 CLC_0105 Clostridium botulinum A str. Hall PSP1 domain-containing protein YP_001386016.1 83374 D 441771 CDS YP_001386017.1 153937748 5401445 84300..84503 1 NC_009698.1 hypothetical protein 84503 5401445 CLC_0106 Clostridium botulinum A str. Hall hypothetical protein YP_001386017.1 84300 D 441771 CDS YP_001386018.1 153936953 5400060 84585..84755 1 NC_009698.1 identified by match to protein family HMM PF00037; ferredoxin, 4Fe-4S 84755 5400060 CLC_0107 Clostridium botulinum A str. Hall ferredoxin, 4Fe-4S YP_001386018.1 84585 D 441771 CDS YP_001386019.1 153935508 5401693 84876..85616 1 NC_009698.1 hypothetical protein 85616 5401693 CLC_0108 Clostridium botulinum A str. Hall hypothetical protein YP_001386019.1 84876 D 441771 CDS YP_001386020.1 153936779 5400206 85636..86490 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase 86490 5400206 CLC_0109 Clostridium botulinum A str. Hall tetrapyrrole methylase YP_001386020.1 85636 D 441771 CDS YP_001386021.1 153937146 5398228 86646..87749 1 NC_009698.1 identified by match to protein family HMM PF00877; NlpC/P60 family protein 87749 5398228 CLC_0110 Clostridium botulinum A str. Hall NlpC/P60 family protein YP_001386021.1 86646 D 441771 CDS YP_001386022.1 153934492 5401120 complement(87849..88094) 1 NC_009698.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 88094 5401120 CLC_0111 Clostridium botulinum A str. Hall AbrB family transcriptional regulator YP_001386022.1 87849 R 441771 CDS YP_001386023.1 153935199 5398624 88901..89512 1 NC_009698.1 identified by match to protein family HMM PF08876; hypothetical protein 89512 5398624 CLC_0112 Clostridium botulinum A str. Hall hypothetical protein YP_001386023.1 88901 D 441771 CDS YP_001386024.1 153936391 5398693 89934..91145 1 NC_009698.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078; arginine deiminase 91145 arcA-1 5398693 arcA-1 Clostridium botulinum A str. Hall arginine deiminase YP_001386024.1 89934 D 441771 CDS YP_001386025.1 153934984 5398691 complement(91231..91698) 1 NC_009698.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 91698 ispF 5398691 ispF Clostridium botulinum A str. Hall 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001386025.1 91231 R 441771 CDS YP_001386027.1 153936172 5399568 92434..93303 1 NC_009698.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 93303 5399568 CLC_0116 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001386027.1 92434 D 441771 CDS YP_001386028.1 153936920 5400214 complement(93572..93814) 1 NC_009698.1 hypothetical protein 93814 5400214 CLC_0117 Clostridium botulinum A str. Hall hypothetical protein YP_001386028.1 93572 R 441771 CDS YP_001386029.1 153937227 5400191 93934..94509 1 NC_009698.1 identified by match to protein family HMM PF07670; spore maturation protein A 94509 spmA 5400191 spmA Clostridium botulinum A str. Hall spore maturation protein A YP_001386029.1 93934 D 441771 CDS YP_001386030.1 153934572 5398428 94522..95040 1 NC_009698.1 identified by match to protein family HMM PF07670; spore maturation protein B 95040 5398428 CLC_0119 Clostridium botulinum A str. Hall spore maturation protein B YP_001386030.1 94522 D 441771 CDS YP_001386031.1 153934879 5400543 complement(95285..96622) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 96622 5400543 CLC_0120 Clostridium botulinum A str. Hall MATE efflux family protein YP_001386031.1 95285 R 441771 CDS YP_001386032.1 153935117 5401508 96766..97338 1 NC_009698.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 97338 udgA 5401508 udgA Clostridium botulinum A str. Hall uracil-DNA glycosylase YP_001386032.1 96766 D 441771 CDS YP_001386033.1 153936342 5401546 97367..97801 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 97801 5401546 CLC_0122 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001386033.1 97367 D 441771 CDS YP_001386034.1 153936823 5400695 98183..100120 1 NC_009698.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 100120 metG 5400695 metG Clostridium botulinum A str. Hall methionyl-tRNA synthetase YP_001386034.1 98183 D 441771 CDS YP_001386035.1 153937583 5399644 100285..101790 1 NC_009698.1 identified by match to protein family HMM PF04286; hypothetical protein 101790 5399644 CLC_0124 Clostridium botulinum A str. Hall hypothetical protein YP_001386035.1 100285 D 441771 CDS YP_001386036.1 153934841 5399992 101941..102735 1 NC_009698.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 102735 5399992 CLC_0125 Clostridium botulinum A str. Hall TatD family hydrolase YP_001386036.1 101941 D 441771 CDS YP_001386037.1 153935585 5398865 102963..104021 1 NC_009698.1 identified by match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 104021 5398865 CLC_0126 Clostridium botulinum A str. Hall hypothetical protein YP_001386037.1 102963 D 441771 CDS YP_001386038.1 153936070 5399908 104094..104639 1 NC_009698.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334; primase-like protein 104639 5399908 CLC_0127 Clostridium botulinum A str. Hall primase-like protein YP_001386038.1 104094 D 441771 CDS YP_001386039.1 153937047 5399946 104641..105468 1 NC_009698.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 105468 ksgA 5399946 ksgA Clostridium botulinum A str. Hall dimethyladenosine transferase YP_001386039.1 104641 D 441771 CDS YP_001386040.1 153937636 5401752 105547..106788 1 NC_009698.1 hypothetical protein 106788 5401752 CLC_0129 Clostridium botulinum A str. Hall hypothetical protein YP_001386040.1 105547 D 441771 CDS YP_001386041.1 153936835 5400523 106945..107532 1 NC_009698.1 hypothetical protein 107532 5400523 CLC_0130 Clostridium botulinum A str. Hall hypothetical protein YP_001386041.1 106945 D 441771 CDS YP_001386042.1 153936181 5401571 107701..108534 1 NC_009698.1 lipoprotein 108534 5401571 CLC_0131 Clostridium botulinum A str. Hall lipoprotein YP_001386042.1 107701 D 441771 CDS YP_001386043.1 153937786 5399633 108702..109763 1 NC_009698.1 identified by match to protein family HMM TIGR01730; RND family marcrolide efflux protein 109763 5399633 CLC_0132 Clostridium botulinum A str. Hall RND family marcrolide efflux protein YP_001386043.1 108702 D 441771 CDS YP_001386044.1 153934714 5399468 109774..110469 1 NC_009698.1 identified by match to protein family HMM PF00005; macrolide efflux ABC transporter ATP-binding protein 110469 5399468 CLC_0133 Clostridium botulinum A str. Hall macrolide efflux ABC transporter ATP-binding protein YP_001386044.1 109774 D 441771 CDS YP_001386045.1 153935428 5400751 110466..111674 1 NC_009698.1 identified by match to protein family HMM PF02687; macrolide efflux ABC transporter permease 111674 5400751 CLC_0134 Clostridium botulinum A str. Hall macrolide efflux ABC transporter permease YP_001386045.1 110466 D 441771 CDS YP_001386046.1 153935572 5398757 111756..112598 1 NC_009698.1 MRP protein-like protein 112598 5398757 CLC_0135 Clostridium botulinum A str. Hall MRP protein-like protein YP_001386046.1 111756 D 441771 CDS YP_001386047.1 153936525 5400019 112738..112929 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 112929 5400019 CLC_0136 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001386047.1 112738 D 441771 CDS YP_001386048.1 153935054 5398912 113004..113138 1 NC_009698.1 identified by Glimmer3; hypothetical protein 113138 5398912 CLC_0137 Clostridium botulinum A str. Hall hypothetical protein YP_001386048.1 113004 D 441771 CDS YP_001386049.1 153935868 5400176 complement(113375..113551) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 113551 5400176 CLC_0138 Clostridium botulinum A str. Hall hypothetical protein YP_001386049.1 113375 R 441771 CDS YP_001386050.1 153935993 5399866 113629..114699 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 114699 5399866 CLC_0139 Clostridium botulinum A str. Hall diguanylate cyclase YP_001386050.1 113629 D 441771 CDS YP_001386051.1 153935494 5401235 114756..115484 1 NC_009698.1 identified by match to protein family HMM PF02308; mgtC family protein 115484 5401235 CLC_0140 Clostridium botulinum A str. Hall mgtC family protein YP_001386051.1 114756 D 441771 CDS YP_001386052.1 153935349 5399046 115774..117915 1 NC_009698.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 117915 nrdD 5399046 nrdD Clostridium botulinum A str. Hall anaerobic ribonucleoside triphosphate reductase YP_001386052.1 115774 D 441771 CDS YP_001386053.1 153934804 5399748 117932..118447 1 NC_009698.1 identified by match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 118447 nrdG 5399748 nrdG Clostridium botulinum A str. Hall anaerobic ribonucleoside-triphosphate reductase activating protein YP_001386053.1 117932 D 441771 CDS YP_001386055.1 153936731 5399056 complement(118984..119658) 1 NC_009698.1 hypothetical protein 119658 5399056 CLC_0144 Clostridium botulinum A str. Hall hypothetical protein YP_001386055.1 118984 R 441771 CDS YP_001386056.1 153936562 5399148 complement(119660..119998) 1 NC_009698.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 119998 5399148 CLC_0145 Clostridium botulinum A str. Hall PadR family transcriptional regulator YP_001386056.1 119660 R 441771 CDS YP_001386057.1 153937324 5400421 complement(120119..120757) 1 NC_009698.1 zinc-dependent hydrolase 120757 5400421 CLC_0146 Clostridium botulinum A str. Hall zinc-dependent hydrolase YP_001386057.1 120119 R 441771 CDS YP_001386058.1 153934659 5399270 121199..124315 1 NC_009698.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 124315 ileS 5399270 ileS Clostridium botulinum A str. Hall isoleucyl-tRNA synthetase YP_001386058.1 121199 D 441771 CDS YP_001386059.1 153935392 5401640 124466..125464 1 NC_009698.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 125464 5401640 CLC_0148 Clostridium botulinum A str. Hall LacI family transcriptional regulator YP_001386059.1 124466 D 441771 CDS YP_001386060.1 153937141 5400803 125680..129732 1 NC_009698.1 hypothetical protein 129732 5400803 CLC_0149 Clostridium botulinum A str. Hall hypothetical protein YP_001386060.1 125680 D 441771 CDS YP_001386061.1 153936480 5398431 129807..130874 1 NC_009698.1 identified by match to protein family HMM PF00483; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 130874 5398431 CLC_0150 Clostridium botulinum A str. Hall mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001386061.1 129807 D 441771 CDS YP_001386062.1 153937649 5398619 131210..132499 1 NC_009698.1 identified by match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 132499 5398619 CLC_0151 Clostridium botulinum A str. Hall hypothetical protein YP_001386062.1 131210 D 441771 CDS YP_001386063.1 153934535 5400340 132504..133310 1 NC_009698.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268; hypothetical protein 133310 5400340 CLC_0152 Clostridium botulinum A str. Hall hypothetical protein YP_001386063.1 132504 D 441771 CDS YP_001386064.1 153935717 5401541 133330..134076 1 NC_009698.1 hypothetical protein 134076 5401541 CLC_0153 Clostridium botulinum A str. Hall hypothetical protein YP_001386064.1 133330 D 441771 CDS YP_001386065.1 153935988 5398319 134301..135683 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 135683 5398319 CLC_0154 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001386065.1 134301 D 441771 CDS YP_001386066.1 153937177 5400662 135870..137144 1 NC_009698.1 identified by match to protein family HMM PF01547; sugar-binding protein 137144 5400662 CLC_0155 Clostridium botulinum A str. Hall sugar-binding protein YP_001386066.1 135870 D 441771 CDS YP_001386067.1 153935068 5400968 complement(137246..138361) 1 NC_009698.1 identified by match to protein family HMM PF00534; mannosyltransferase 138361 5400968 CLC_0156 Clostridium botulinum A str. Hall mannosyltransferase YP_001386067.1 137246 R 441771 CDS YP_001386068.1 153936541 5398617 138527..139537 1 NC_009698.1 identified by match to protein family HMM TIGR02906; spore coat protein 139537 5398617 CLC_0157 Clostridium botulinum A str. Hall spore coat protein YP_001386068.1 138527 D 441771 CDS YP_001386069.1 153937436 5401059 139552..139746 1 NC_009698.1 identified by Glimmer3; hypothetical protein 139746 5401059 CLC_0158 Clostridium botulinum A str. Hall hypothetical protein YP_001386069.1 139552 D 441771 CDS YP_001386070.1 153937527 5400565 139773..140540 1 NC_009698.1 hypothetical protein 140540 5400565 CLC_0159 Clostridium botulinum A str. Hall hypothetical protein YP_001386070.1 139773 D 441771 CDS YP_001386071.1 153935309 5399640 140553..141566 1 NC_009698.1 identified by match to protein family HMM TIGR02906; spore coat protein 141566 5399640 CLC_0160 Clostridium botulinum A str. Hall spore coat protein YP_001386071.1 140553 D 441771 CDS YP_001386072.1 153934675 5398244 complement(141921..143048) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 143048 5398244 CLC_0161 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001386072.1 141921 R 441771 CDS YP_001386073.1 153935800 5400251 143165..144169 1 NC_009698.1 identified by match to protein family HMM TIGR02906; spore coat protein CotS 144169 cotS 5400251 cotS Clostridium botulinum A str. Hall spore coat protein CotS YP_001386073.1 143165 D 441771 CDS YP_001386074.1 153936938 5399258 144293..145195 1 NC_009698.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855; peptidase 145195 5399258 CLC_0163 Clostridium botulinum A str. Hall peptidase YP_001386074.1 144293 D 441771 CDS YP_001386075.1 153937346 5399920 145391..145627 1 NC_009698.1 identified by match to protein family HMM PF06257; hypothetical protein 145627 5399920 CLC_0164 Clostridium botulinum A str. Hall hypothetical protein YP_001386075.1 145391 D 441771 CDS YP_001386076.1 153935078 5399766 145731..147293 1 NC_009698.1 identified by match to protein family HMM PF01476; LysM domain-containing protein 147293 5399766 CLC_0165 Clostridium botulinum A str. Hall LysM domain-containing protein YP_001386076.1 145731 D 441771 CDS YP_001386077.1 153936295 5399443 147590..147703 1 NC_009698.1 identified by Glimmer3; hypothetical protein 147703 5399443 CLC_0166 Clostridium botulinum A str. Hall hypothetical protein YP_001386077.1 147590 D 441771 CDS YP_001386078.1 153937052 5399664 147673..148473 1 NC_009698.1 identified by match to protein family HMM PF03575; match to protein family HMM TIGR02069; cyanophycinase 148473 cphB 5399664 cphB Clostridium botulinum A str. Hall cyanophycinase YP_001386078.1 147673 D 441771 CDS YP_001386079.1 153935877 5399704 148517..151138 1 NC_009698.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 151138 cphA 5399704 cphA Clostridium botulinum A str. Hall cyanophycin synthetase YP_001386079.1 148517 D 441771 CDS YP_001386080.1 153936778 5398884 151231..152073 1 NC_009698.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 152073 ipk 5398884 ipk Clostridium botulinum A str. Hall 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001386080.1 151231 D 441771 CDS YP_001386081.1 153935672 5398265 152239..152436 1 NC_009698.1 identified by Glimmer3; hypothetical protein 152436 5398265 CLC_0170 Clostridium botulinum A str. Hall hypothetical protein YP_001386081.1 152239 D 441771 CDS YP_001386082.1 153936618 5401119 152496..154016 1 NC_009698.1 identified by match to protein family HMM PF03323; spore germination protein 154016 5401119 CLC_0171 Clostridium botulinum A str. Hall spore germination protein YP_001386082.1 152496 D 441771 CDS YP_001386083.1 153937566 5398563 154036..155133 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 155133 5398563 CLC_0172 Clostridium botulinum A str. Hall spore germination protein YP_001386083.1 154036 D 441771 CDS YP_001386084.1 153934816 5401231 155183..156364 1 NC_009698.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; Ger(x)C family germination protein 156364 5401231 CLC_0173 Clostridium botulinum A str. Hall Ger(x)C family germination protein YP_001386084.1 155183 D 441771 CDS YP_001386085.1 153935571 5399201 156437..157069 1 NC_009698.1 identified by match to protein family HMM TIGR02837; stage II sporulation protein R 157069 5399201 CLC_0174 Clostridium botulinum A str. Hall stage II sporulation protein R YP_001386085.1 156437 D 441771 CDS YP_001386086.1 153936337 5400851 complement(157106..158347) 1 NC_009698.1 identified by match to protein family HMM PF04101; match to protein family HMM PF06925; hypothetical protein 158347 5400851 CLC_0175 Clostridium botulinum A str. Hall hypothetical protein YP_001386086.1 157106 R 441771 CDS YP_001386087.1 153936395 5399681 158720..160090 1 NC_009698.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889; germination protein YpeB 160090 ypeB 5399681 ypeB Clostridium botulinum A str. Hall germination protein YpeB YP_001386087.1 158720 D 441771 CDS YP_001386088.1 153937112 5401399 160193..161173 1 NC_009698.1 identified by match to protein family HMM PF02568; hypothetical protein 161173 5401399 CLC_0177 Clostridium botulinum A str. Hall hypothetical protein YP_001386088.1 160193 D 441771 CDS YP_001386089.1 153936129 5398698 161198..161626 1 NC_009698.1 identified by match to protein family HMM PF09148; hypothetical protein 161626 5398698 CLC_0178 Clostridium botulinum A str. Hall hypothetical protein YP_001386089.1 161198 D 441771 CDS YP_001386090.1 153936916 5400110 161758..162057 1 NC_009698.1 hypothetical protein 162057 5400110 CLC_0179 Clostridium botulinum A str. Hall hypothetical protein YP_001386090.1 161758 D 441771 CDS YP_001386091.1 153937013 5398352 162291..163892 1 NC_009698.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 163892 pyrG 5398352 pyrG Clostridium botulinum A str. Hall CTP synthetase YP_001386091.1 162291 D 441771 CDS YP_001386092.1 153934496 5398424 164340..164684 1 NC_009698.1 hypothetical protein 164684 5398424 CLC_0181 Clostridium botulinum A str. Hall hypothetical protein YP_001386092.1 164340 D 441771 CDS YP_001386093.1 153934510 5400490 164856..166301 1 NC_009698.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 166301 rho 5400490 rho Clostridium botulinum A str. Hall transcription termination factor Rho YP_001386093.1 164856 D 441771 CDS YP_001386094.1 153935369 5399154 complement(166341..166559) 1 NC_009698.1 identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 166559 rpmE 5399154 rpmE Clostridium botulinum A str. Hall 50S ribosomal protein L31 YP_001386094.1 166341 R 441771 CDS YP_001386095.1 153936545 5399142 166786..167361 1 NC_009698.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 167361 tdk 5399142 tdk Clostridium botulinum A str. Hall thymidine kinase YP_001386095.1 166786 D 441771 CDS YP_001386096.1 153937305 5398791 167378..168295 1 NC_009698.1 identified by match to protein family HMM PF07136; hypothetical protein 168295 5398791 CLC_0185 Clostridium botulinum A str. Hall hypothetical protein YP_001386096.1 167378 D 441771 CDS YP_001386097.1 153935975 5400710 168303..169154 1 NC_009698.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; protein-(glutamine-N5) methyltransferase 169154 hemK 5400710 hemK Clostridium botulinum A str. Hall protein-(glutamine-N5) methyltransferase YP_001386097.1 168303 D 441771 CDS YP_001386098.1 153936703 5401331 169236..170312 1 NC_009698.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 170312 prfA 5401331 prfA Clostridium botulinum A str. Hall peptide chain release factor 1 YP_001386098.1 169236 D 441771 CDS YP_001386099.1 153934667 5401505 170340..170948 1 NC_009698.1 hypothetical protein 170948 5401505 CLC_0188 Clostridium botulinum A str. Hall hypothetical protein YP_001386099.1 170340 D 441771 CDS YP_001386100.1 153935179 5399111 171008..171727 1 NC_009698.1 identified by match to protein family HMM PF02535; ZIP transporter family protein 171727 5399111 CLC_0189 Clostridium botulinum A str. Hall ZIP transporter family protein YP_001386100.1 171008 D 441771 CDS YP_001386101.1 153936453 5398770 171748..172803 1 NC_009698.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 172803 5398770 CLC_0190 Clostridium botulinum A str. Hall Sua5/YciO/YrdC/YwlC family protein YP_001386101.1 171748 D 441771 CDS YP_001386102.1 153935491 5399542 172812..173264 1 NC_009698.1 identified by match to protein family HMM PF01451; low molecular weight protein tyrosine phosphatase 173264 5399542 CLC_0191 Clostridium botulinum A str. Hall low molecular weight protein tyrosine phosphatase YP_001386102.1 172812 D 441771 CDS YP_001386103.1 153935683 5399061 173324..173761 1 NC_009698.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 173761 rpiB 5399061 rpiB Clostridium botulinum A str. Hall ribose-5-phosphate isomerase B YP_001386103.1 173324 D 441771 CDS YP_001386104.1 153934722 5398716 173791..174420 1 NC_009698.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 174420 upp 5398716 upp Clostridium botulinum A str. Hall uracil phosphoribosyltransferase YP_001386104.1 173791 D 441771 CDS YP_001386105.1 153937331 5400667 174927..175415 1 NC_009698.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 175415 5400667 CLC_0194 Clostridium botulinum A str. Hall cytidine/deoxycytidylate deaminase YP_001386105.1 174927 D 441771 CDS YP_001386106.1 153936575 5400645 175523..176557 1 NC_009698.1 identified by match to protein family HMM PF00953; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase 176557 tagO 5400645 tagO Clostridium botulinum A str. Hall UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase YP_001386106.1 175523 D 441771 CDS YP_001386107.1 153937423 5399124 176571..177728 1 NC_009698.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 177728 mnaA 5399124 mnaA Clostridium botulinum A str. Hall UDP-N-acetylglucosamine 2-epimerase YP_001386107.1 176571 D 441771 CDS YP_001386108.1 153936404 5400605 178220..178588 1 NC_009698.1 ATP synthase I 178588 5400605 CLC_0197 Clostridium botulinum A str. Hall ATP synthase I YP_001386108.1 178220 D 441771 CDS YP_001386109.1 153936027 5399169 178603..179283 1 NC_009698.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 179283 atpB 5399169 atpB Clostridium botulinum A str. Hall ATP synthase F0F1 subunit A YP_001386109.1 178603 D 441771 CDS YP_001386110.1 153934640 5398971 179323..179562 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 179562 atpE 5398971 atpE Clostridium botulinum A str. Hall ATP synthase F0F1 subunit C YP_001386110.1 179323 D 441771 CDS YP_001386111.1 153934635 5399977 179638..180117 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit B is part of the membrane proton channel; ATP synthase F0F1 subunit B 180117 atpF 5399977 atpF Clostridium botulinum A str. Hall ATP synthase F0F1 subunit B YP_001386111.1 179638 D 441771 CDS YP_001386112.1 153937337 5400765 180120..180659 1 NC_009698.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 180659 atpH 5400765 atpH Clostridium botulinum A str. Hall ATP synthase F0F1 subunit delta YP_001386112.1 180120 D 441771 CDS YP_001386113.1 153937693 5399333 180670..182184 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 182184 atpA 5399333 atpA Clostridium botulinum A str. Hall ATP synthase F0F1 subunit alpha YP_001386113.1 180670 D 441771 CDS YP_001386114.1 153935396 5400528 182206..183054 1 NC_009698.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 183054 atpG 5400528 atpG Clostridium botulinum A str. Hall ATP synthase F0F1 subunit gamma YP_001386114.1 182206 D 441771 CDS YP_001386115.1 153935797 5399395 183068..184459 1 NC_009698.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 184459 atpD 5399395 atpD Clostridium botulinum A str. Hall ATP synthase F0F1 subunit beta YP_001386115.1 183068 D 441771 CDS YP_001386116.1 153934961 5400235 184484..184885 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 184885 atpC 5400235 atpC Clostridium botulinum A str. Hall ATP synthase F0F1 subunit epsilon YP_001386116.1 184484 D 441771 CDS YP_001386117.1 153935794 5398787 185078..185785 1 NC_009698.1 hypothetical protein 185785 5398787 CLC_0206 Clostridium botulinum A str. Hall hypothetical protein YP_001386117.1 185078 D 441771 CDS YP_001386118.1 153935043 5400074 185809..187065 1 NC_009698.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 187065 murA-1 5400074 murA-1 Clostridium botulinum A str. Hall UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001386118.1 185809 D 441771 CDS YP_001386119.1 153937283 5398784 187335..188411 1 NC_009698.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870; stage II sporulation protein D 188411 spoIID 5398784 spoIID Clostridium botulinum A str. Hall stage II sporulation protein D YP_001386119.1 187335 D 441771 CDS YP_001386120.1 153936256 5400986 188943..189689 1 NC_009698.1 identified by match to protein family HMM PF01551; peptidase 189689 5400986 CLC_0209 Clostridium botulinum A str. Hall peptidase YP_001386120.1 188943 D 441771 CDS YP_001386121.1 153936313 5401114 189797..190051 1 NC_009698.1 identified by match to protein family HMM TIGR02844; stage III sporulation protein D 190051 spoIIID 5401114 spoIIID Clostridium botulinum A str. Hall stage III sporulation protein D YP_001386121.1 189797 D 441771 CDS YP_001386122.1 153935639 5398809 190151..191179 1 NC_009698.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 191179 5398809 CLC_0211 Clostridium botulinum A str. Hall rod shape-determining protein Mbl YP_001386122.1 190151 D 441771 CDS YP_001386123.1 153934865 5399491 complement(191304..191828) 1 NC_009698.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; hypothetical protein 191828 5399491 CLC_0212 Clostridium botulinum A str. Hall hypothetical protein YP_001386123.1 191304 R 441771 CDS YP_001386124.1 153937579 5399883 complement(191877..192599) 1 NC_009698.1 identified by match to protein family HMM PF01171; hypothetical protein 192599 5399883 CLC_0213 Clostridium botulinum A str. Hall hypothetical protein YP_001386124.1 191877 R 441771 CDS YP_001386125.1 153936792 5399403 193580..194755 1 NC_009698.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 194755 metK 5399403 metK Clostridium botulinum A str. Hall S-adenosylmethionine synthetase YP_001386125.1 193580 D 441771 CDS YP_001386126.1 153936042 5401069 194946..197180 1 NC_009698.1 identified by match to protein family HMM TIGR01448; recombinase D 197180 5401069 CLC_0223 Clostridium botulinum A str. Hall recombinase D YP_001386126.1 194946 D 441771 CDS YP_001386127.1 153935299 5401030 197206..198228 1 NC_009698.1 hypothetical protein 198228 5401030 CLC_0224 Clostridium botulinum A str. Hall hypothetical protein YP_001386127.1 197206 D 441771 CDS YP_001386128.1 153937133 5400876 198201..198878 1 NC_009698.1 identified by match to protein family HMM PF00156; ComF-like protein 198878 5400876 CLC_0225 Clostridium botulinum A str. Hall ComF-like protein YP_001386128.1 198201 D 441771 CDS YP_001386129.1 153936354 5399187 199303..199830 1 NC_009698.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 199830 yfiA 5399187 yfiA Clostridium botulinum A str. Hall ribosomal subunit interface protein YP_001386129.1 199303 D 441771 CDS YP_001386130.1 153935608 5398526 200058..202565 1 NC_009698.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 202565 secA 5398526 secA Clostridium botulinum A str. Hall preprotein translocase subunit SecA YP_001386130.1 200058 D 441771 CDS YP_001386131.1 153936079 5401833 202929..203906 1 NC_009698.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA; peptide chain release factor 2 203906 prfB 5401833 prfB Clostridium botulinum A str. Hall peptide chain release factor 2 YP_001386131.1 202929 D 441771 CDS YP_001386132.1 153935137 5400550 complement(204027..205391) 1 NC_009698.1 identified by match to protein family HMM PF04389; peptidase 205391 5400550 CLC_0229 Clostridium botulinum A str. Hall peptidase YP_001386132.1 204027 R 441771 CDS YP_001386133.1 153934599 5400685 205499..207655 1 NC_009698.1 identified by match to protein family HMM PF00575; RNA-binding protein 207655 5400685 CLC_0230 Clostridium botulinum A str. Hall RNA-binding protein YP_001386133.1 205499 D 441771 CDS YP_001386134.1 153937095 5400359 207939..208532 1 NC_009698.1 hypothetical protein 208532 5400359 CLC_0231 Clostridium botulinum A str. Hall hypothetical protein YP_001386134.1 207939 D 441771 CDS YP_001386135.1 153936476 5399607 208943..210592 1 NC_009698.1 hypothetical protein 210592 5399607 CLC_0232 Clostridium botulinum A str. Hall hypothetical protein YP_001386135.1 208943 D 441771 CDS YP_001386136.1 153935408 5400151 210613..210873 1 NC_009698.1 hypothetical protein 210873 5400151 CLC_0233 Clostridium botulinum A str. Hall hypothetical protein YP_001386136.1 210613 D 441771 CDS YP_001386137.1 153934587 5401365 210887..211573 1 NC_009698.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 211573 5401365 CLC_0234 Clostridium botulinum A str. Hall Ser/Thr protein phosphatase YP_001386137.1 210887 D 441771 CDS YP_001386138.1 153937457 5399464 211657..211938 1 NC_009698.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 211938 5399464 CLC_0235 Clostridium botulinum A str. Hall ArsR family transcriptional regulator YP_001386138.1 211657 D 441771 CDS YP_001386139.1 153936679 5401316 211978..214431 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF01206; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 214431 5401316 CLC_0236 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001386139.1 211978 D 441771 CDS YP_001386140.1 153935874 5398441 complement(214459..215313) 1 NC_009698.1 hypothetical protein 215313 5398441 CLC_0237 Clostridium botulinum A str. Hall hypothetical protein YP_001386140.1 214459 R 441771 CDS YP_001386141.1 153937615 5401476 215470..216258 1 NC_009698.1 identified by match to protein family HMM PF04607; RelA/SpoT domain-containing protein 216258 5401476 CLC_0238 Clostridium botulinum A str. Hall RelA/SpoT domain-containing protein YP_001386141.1 215470 D 441771 CDS YP_001386143.1 153935447 5400866 complement(216561..219002) 1 NC_009698.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 219002 leuS 5400866 leuS Clostridium botulinum A str. Hall leucyl-tRNA synthetase YP_001386143.1 216561 R 441771 CDS YP_001386144.1 153934709 5398800 complement(219379..219783) 1 NC_009698.1 identified by match to protein family HMM PF00581; hypothetical protein 219783 5398800 CLC_0241 Clostridium botulinum A str. Hall hypothetical protein YP_001386144.1 219379 R 441771 CDS YP_001386145.1 153937397 5401429 complement(220097..220621) 1 NC_009698.1 hypothetical protein 220621 5401429 CLC_0244 Clostridium botulinum A str. Hall hypothetical protein YP_001386145.1 220097 R 441771 CDS YP_001386146.1 153937577 5400930 complement(220646..221245) 1 NC_009698.1 identified by match to protein family HMM PF00226; match to protein family HMM PF07719; DnaJ family molecular chaperone 221245 5400930 CLC_0245 Clostridium botulinum A str. Hall DnaJ family molecular chaperone YP_001386146.1 220646 R 441771 CDS YP_001386147.1 153935232 5399810 complement(222110..222649) 1 NC_009698.1 identified by match to protein family HMM PF01928; adenylyl cyclase CyaB 222649 5399810 CLC_0247 Clostridium botulinum A str. Hall adenylyl cyclase CyaB YP_001386147.1 222110 R 441771 CDS YP_001386148.1 153935961 5399570 222956..223993 1 NC_009698.1 hypothetical protein 223993 5399570 CLC_0248 Clostridium botulinum A str. Hall hypothetical protein YP_001386148.1 222956 D 441771 CDS YP_001386149.1 153937182 5399835 complement(224266..225192) 1 NC_009698.1 identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01859; fructose-1,6-bisphosphate aldolase 225192 fba 5399835 fba Clostridium botulinum A str. Hall fructose-1,6-bisphosphate aldolase YP_001386149.1 224266 R 441771 CDS YP_001386150.1 153936874 5398486 complement(225418..225702) 1 NC_009698.1 hypothetical protein 225702 5398486 CLC_0250 Clostridium botulinum A str. Hall hypothetical protein YP_001386150.1 225418 R 441771 CDS YP_001386151.1 153936318 5399019 complement(225819..226487) 1 NC_009698.1 identified by match to protein family HMM PF04239; hypothetical protein 226487 5399019 CLC_0251 Clostridium botulinum A str. Hall hypothetical protein YP_001386151.1 225819 R 441771 CDS YP_001386152.1 153937058 5399591 226612..228270 1 NC_009698.1 identified by match to protein family HMM PF00485; threonyl-tRNA synthetase/uridine kinase 228270 5399591 CLC_0252 Clostridium botulinum A str. Hall threonyl-tRNA synthetase/uridine kinase YP_001386152.1 226612 D 441771 CDS YP_001386153.1 153934840 5400838 228408..228539 1 NC_009698.1 identified by Glimmer3; hypothetical protein 228539 5400838 CLC_0253 Clostridium botulinum A str. Hall hypothetical protein YP_001386153.1 228408 D 441771 CDS YP_001386154.1 153935636 5398574 complement(228640..229161) 1 NC_009698.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 229161 pssA 5398574 pssA Clostridium botulinum A str. Hall CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001386154.1 228640 R 441771 CDS YP_001386155.1 153936233 5398752 229348..229764 1 NC_009698.1 identified by match to protein family HMM PF00571; hypothetical protein 229764 5398752 CLC_0255 Clostridium botulinum A str. Hall hypothetical protein YP_001386155.1 229348 D 441771 CDS YP_001386156.1 153937206 5400520 229870..230754 1 NC_009698.1 similar to YegS from E. coli; lipid kinase 230754 5400520 CLC_0256 Clostridium botulinum A str. Hall lipid kinase YP_001386156.1 229870 D 441771 CDS YP_001386157.1 153935045 5398949 230828..231472 1 NC_009698.1 hypothetical protein 231472 5398949 CLC_0257 Clostridium botulinum A str. Hall hypothetical protein YP_001386157.1 230828 D 441771 CDS YP_001386158.1 153935718 5400404 complement(231564..233501) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08497; hypothetical protein 233501 5400404 CLC_0258 Clostridium botulinum A str. Hall hypothetical protein YP_001386158.1 231564 R 441771 CDS YP_001386159.1 153936983 5399289 234096..235361 1 NC_009698.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03448; match to protein family HMM PF05239; PRC-barrel domain/MgtE domain/CBS domain-containing protein 235361 5399289 CLC_0259 Clostridium botulinum A str. Hall PRC-barrel domain/MgtE domain/CBS domain-containing protein YP_001386159.1 234096 D 441771 CDS YP_001386160.1 153935278 5400663 235591..236286 1 NC_009698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869; spore-cortex-lytic enzyme 236286 sleB 5400663 sleB Clostridium botulinum A str. Hall spore-cortex-lytic enzyme YP_001386160.1 235591 D 441771 CDS YP_001386161.1 153937069 5401170 236650..237564 1 NC_009698.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 237564 cysK-1 5401170 cysK-1 Clostridium botulinum A str. Hall cysteine synthase A YP_001386161.1 236650 D 441771 CDS YP_001386162.1 153936522 5399302 237579..238175 1 NC_009698.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 238175 cysE 5399302 cysE Clostridium botulinum A str. Hall serine O-acetyltransferase YP_001386162.1 237579 D 441771 CDS YP_001386163.1 153935506 5400700 238197..239162 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF08331; (Fe-S)-binding protein 239162 5400700 CLC_0263 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001386163.1 238197 D 441771 CDS YP_001386164.1 153935872 5401588 239310..240011 1 NC_009698.1 identified by match to protein family HMM PF01553; 1-acyl-sn-glycerol-3-phosphate acyltransferase 240011 5401588 CLC_0264 Clostridium botulinum A str. Hall 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001386164.1 239310 D 441771 CDS YP_001386165.1 153937471 5400455 240104..240745 1 NC_009698.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 240745 nth 5400455 nth Clostridium botulinum A str. Hall endonuclease III YP_001386165.1 240104 D 441771 CDS YP_001386166.1 153937822 5401239 241079..242251 1 NC_009698.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949; malic enzyme 242251 5401239 CLC_0266 Clostridium botulinum A str. Hall malic enzyme YP_001386166.1 241079 D 441771 CDS YP_001386167.1 153936858 5399069 complement(242278..243507) 1 NC_009698.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; competence damage-inducible protein A 243507 5399069 CLC_0267 Clostridium botulinum A str. Hall competence damage-inducible protein A YP_001386167.1 242278 R 441771 CDS YP_001386168.1 153935487 5399794 complement(243533..244516) 1 NC_009698.1 hypothetical protein 244516 5399794 CLC_0268 Clostridium botulinum A str. Hall hypothetical protein YP_001386168.1 243533 R 441771 CDS YP_001386169.1 153934586 5401556 complement(244626..245660) 1 NC_009698.1 identified by match to protein family HMM PF05343; glutamyl aminopeptidase 245660 5401556 CLC_0269 Clostridium botulinum A str. Hall glutamyl aminopeptidase YP_001386169.1 244626 R 441771 CDS YP_001386170.1 153935793 5398953 245812..246948 1 NC_009698.1 identified by match to protein family HMM PF04294; von Willebrand factor A 246948 5398953 CLC_0270 Clostridium botulinum A str. Hall von Willebrand factor A YP_001386170.1 245812 D 441771 CDS YP_001386171.1 153935023 5401315 247153..248505 1 NC_009698.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 248505 5401315 CLC_0271 Clostridium botulinum A str. Hall von Willebrand factor A YP_001386171.1 247153 D 441771 CDS YP_001386172.1 153936417 5400643 248652..249659 1 NC_009698.1 identified by match to protein family HMM PF04055; spore photoproduct lyase 249659 splB 5400643 splB Clostridium botulinum A str. Hall spore photoproduct lyase YP_001386172.1 248652 D 441771 CDS YP_001386173.1 153935647 5399168 249787..250254 1 NC_009698.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; hypothetical protein 250254 5399168 CLC_0273 Clostridium botulinum A str. Hall hypothetical protein YP_001386173.1 249787 D 441771 CDS YP_001386174.1 153935282 5401609 250267..251106 1 NC_009698.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 251106 5401609 CLC_0274 Clostridium botulinum A str. Hall DegV family protein YP_001386174.1 250267 D 441771 CDS YP_001386175.1 153937127 5398459 251400..252503 1 NC_009698.1 identified by match to protein family HMM PF02608; Bmp family lipoprotein 252503 5398459 CLC_0275 Clostridium botulinum A str. Hall Bmp family lipoprotein YP_001386175.1 251400 D 441771 CDS YP_001386176.1 153936866 5399904 252669..254219 1 NC_009698.1 identified by match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein 254219 5399904 CLC_0276 Clostridium botulinum A str. Hall sugar ABC transporter ATP-binding protein YP_001386176.1 252669 D 441771 CDS YP_001386177.1 153936085 5398680 254221..255324 1 NC_009698.1 identified by match to protein family HMM PF02653; sugar ABC transporter permease 255324 5398680 CLC_0277 Clostridium botulinum A str. Hall sugar ABC transporter permease YP_001386177.1 254221 D 441771 CDS YP_001386178.1 153937391 5399709 255317..256243 1 NC_009698.1 identified by match to protein family HMM PF02653; sugar ABC transporter permease 256243 5399709 CLC_0278 Clostridium botulinum A str. Hall sugar ABC transporter permease YP_001386178.1 255317 D 441771 CDS YP_001386179.1 153937491 5400175 256355..257080 1 NC_009698.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 257080 5400175 CLC_0279 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001386179.1 256355 D 441771 CDS YP_001386180.1 153935180 5399873 257409..258782 1 NC_009698.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 258782 rpoN 5399873 rpoN Clostridium botulinum A str. Hall RNA polymerase factor sigma-54 YP_001386180.1 257409 D 441771 CDS YP_001386181.1 153936137 5399543 259070..260101 1 NC_009698.1 identified by match to protein family HMM PF04198; central glycolytic genes regulator 260101 cggR 5399543 cggR Clostridium botulinum A str. Hall central glycolytic genes regulator YP_001386181.1 259070 D 441771 CDS YP_001386182.1 153936763 5401338 260179..261186 1 NC_009698.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 261186 gap-1 5401338 gap-1 Clostridium botulinum A str. Hall glyceraldehyde-3-phosphate dehydrogenase, type I YP_001386182.1 260179 D 441771 CDS YP_001386183.1 153937674 5400065 261483..262679 1 NC_009698.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 262679 pgk 5400065 pgk Clostridium botulinum A str. Hall phosphoglycerate kinase YP_001386183.1 261483 D 441771 CDS YP_001386184.1 153935201 5400030 262741..263487 1 NC_009698.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 263487 tpiA 5400030 tpiA Clostridium botulinum A str. Hall triosephosphate isomerase YP_001386184.1 262741 D 441771 CDS YP_001386185.1 153936169 5400999 263579..265108 1 NC_009698.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 265108 gpmI 5400999 gpmI Clostridium botulinum A str. Hall phosphoglyceromutase YP_001386185.1 263579 D 441771 CDS YP_001386186.1 153936384 5400188 265164..266459 1 NC_009698.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 266459 eno 5400188 eno Clostridium botulinum A str. Hall phosphopyruvate hydratase YP_001386186.1 265164 D 441771 CDS YP_001386187.1 153937200 5401378 266682..266915 1 NC_009698.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 266915 secG 5401378 secG Clostridium botulinum A str. Hall preprotein translocase subunit SecG YP_001386187.1 266682 D 441771 CDS YP_001386188.1 153934693 5398708 267124..269301 1 NC_009698.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 269301 rnr 5398708 rnr Clostridium botulinum A str. Hall ribonuclease R YP_001386188.1 267124 D 441771 CDS YP_001386189.1 153935686 5399786 269710..270468 1 NC_009698.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 270468 surE 5399786 surE Clostridium botulinum A str. Hall stationary phase survival protein SurE YP_001386189.1 269710 D 441771 CDS YP_001386190.1 153934929 5400804 270725..271195 1 NC_009698.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 271195 smpB 5400804 smpB Clostridium botulinum A str. Hall SsrA-binding protein YP_001386190.1 270725 D 441771 CDS YP_001386191.1 153935855 5398674 complement(271334..272497) 1 NC_009698.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 272497 5398674 CLC_0291 Clostridium botulinum A str. Hall sodium:dicarboxylate symporter family protein YP_001386191.1 271334 R 441771 CDS YP_001386192.1 153935558 5401184 274432..275763 1 NC_009698.1 identified by match to protein family HMM PF01565; match to protein family HMM PF08031; FAD-binding protein 275763 5401184 CLC_0293 Clostridium botulinum A str. Hall FAD-binding protein YP_001386192.1 274432 D 441771 CDS YP_001386194.1 153937185 5401729 276442..276600 1 NC_009698.1 identified by Glimmer3; hypothetical protein 276600 5401729 CLC_0296 Clostridium botulinum A str. Hall hypothetical protein YP_001386194.1 276442 D 441771 CDS YP_001386195.1 153935155 5398850 complement(276614..276763) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 276763 5398850 CLC_0297 Clostridium botulinum A str. Hall hypothetical protein YP_001386195.1 276614 R 441771 CDS YP_001386196.1 153936946 5400961 277738..279162 1 NC_009698.1 identified by match to protein family HMM PF00282; amino acid decarboxylase 279162 5400961 CLC_0299 Clostridium botulinum A str. Hall amino acid decarboxylase YP_001386196.1 277738 D 441771 CDS YP_001386197.1 153937683 5400869 279350..280201 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin protein 280201 5400869 CLC_0300 Clostridium botulinum A str. Hall flagellin protein YP_001386197.1 279350 D 441771 CDS YP_001386198.1 153937341 5401707 280560..282179 1 NC_009698.1 identified by match to protein family HMM PF01569; vanadium-dependent haloperoxidase 282179 5401707 CLC_0301 Clostridium botulinum A str. Hall vanadium-dependent haloperoxidase YP_001386198.1 280560 D 441771 CDS YP_001386199.1 153935913 5399672 282563..283222 1 NC_009698.1 identified by match to protein family HMM PF07883; hypothetical protein 283222 5399672 CLC_0302 Clostridium botulinum A str. Hall hypothetical protein YP_001386199.1 282563 D 441771 CDS YP_001386200.1 153934995 5400501 283563..284672 1 NC_009698.1 hypothetical protein 284672 5400501 CLC_0303 Clostridium botulinum A str. Hall hypothetical protein YP_001386200.1 283563 D 441771 CDS YP_001386201.1 153937723 5399838 285174..286346 1 NC_009698.1 identified by match to protein family HMM PF00390; match to protein family HMM PF01262; match to protein family HMM PF03949; malic enzyme 286346 5399838 CLC_0304 Clostridium botulinum A str. Hall malic enzyme YP_001386201.1 285174 D 441771 CDS YP_001386202.1 153936944 5401689 286558..287532 1 NC_009698.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 287532 kdgT 5401689 kdgT Clostridium botulinum A str. Hall 2-keto-3-deoxygluconate permease YP_001386202.1 286558 D 441771 CDS YP_001386203.1 153935941 5398832 287746..289368 1 NC_009698.1 identified by match to protein family HMM PF02518; sensor histidine kinase 289368 5398832 CLC_0306 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386203.1 287746 D 441771 CDS YP_001386204.1 153934977 5398571 289346..290020 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 290020 5398571 CLC_0307 Clostridium botulinum A str. Hall response regulator YP_001386204.1 289346 D 441771 CDS YP_001386205.1 153936614 5400618 290577..292040 1 NC_009698.1 identified by match to protein family HMM PF00324; lysine-specific permease 292040 lysP 5400618 lysP Clostridium botulinum A str. Hall lysine-specific permease YP_001386205.1 290577 D 441771 CDS YP_001386206.1 153935426 5401227 292584..293318 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 293318 5401227 CLC_0309 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386206.1 292584 D 441771 CDS YP_001386207.1 153934512 5400017 293432..293944 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 293944 5400017 CLC_0310 Clostridium botulinum A str. Hall acetyltransferase YP_001386207.1 293432 D 441771 CDS YP_001386208.1 153937147 5401411 293970..294347 1 NC_009698.1 identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 294347 5401411 CLC_0311 Clostridium botulinum A str. Hall cytidine/deoxycytidylate deaminase YP_001386208.1 293970 D 441771 CDS YP_001386209.1 153936620 5399876 294506..295408 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 295408 5399876 CLC_0312 Clostridium botulinum A str. Hall acetyltransferase YP_001386209.1 294506 D 441771 CDS YP_001386210.1 153937613 5400377 295434..295958 1 NC_009698.1 identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein 295958 5400377 CLC_0313 Clostridium botulinum A str. Hall riboflavin biosynthesis protein RibD domain-containing protein YP_001386210.1 295434 D 441771 CDS YP_001386211.1 153935123 5400864 296021..296950 1 NC_009698.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 296950 5400864 CLC_0314 Clostridium botulinum A str. Hall DNA polymerase III subunit epsilon YP_001386211.1 296021 D 441771 CDS YP_001386213.1 153935443 5399032 complement(297451..298125) 1 NC_009698.1 identified by match to protein family HMM PF00857; isochorismate family protein 298125 5399032 CLC_0316 Clostridium botulinum A str. Hall isochorismate family protein YP_001386213.1 297451 R 441771 CDS YP_001386214.1 153936861 5400814 298552..300882 1 NC_009698.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; xanthine dehydrogenase, molybdopterin-binding subunit 300882 5400814 CLC_0317 Clostridium botulinum A str. Hall xanthine dehydrogenase, molybdopterin-binding subunit YP_001386214.1 298552 D 441771 CDS YP_001386215.1 153937386 5400778 300882..301721 1 NC_009698.1 identified by match to protein family HMM PF00941; xanthine dehydrogenase, FAD-binding subunit 301721 5400778 CLC_0318 Clostridium botulinum A str. Hall xanthine dehydrogenase, FAD-binding subunit YP_001386215.1 300882 D 441771 CDS YP_001386216.1 153934497 5401559 301718..302191 1 NC_009698.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur-binding subunit 302191 5401559 CLC_0319 Clostridium botulinum A str. Hall xanthine dehydrogenase, iron-sulfur-binding subunit YP_001386216.1 301718 D 441771 CDS YP_001386217.1 153936251 5400170 302548..303018 1 NC_009698.1 identified by Glimmer3; hypothetical protein 303018 5400170 CLC_0320 Clostridium botulinum A str. Hall hypothetical protein YP_001386217.1 302548 D 441771 CDS YP_001386218.1 153935768 5399120 303733..304299 1 NC_009698.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534; thiol-disulfide oxidoreductase ResA 304299 5399120 CLC_0322 Clostridium botulinum A str. Hall thiol-disulfide oxidoreductase ResA YP_001386218.1 303733 D 441771 CDS YP_001386219.1 153935185 5401369 304324..305001 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 305001 5401369 CLC_0323 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386219.1 304324 D 441771 CDS YP_001386220.1 153935782 5399377 304973..306391 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 306391 5399377 CLC_0324 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386220.1 304973 D 441771 CDS YP_001386221.1 153937334 5400289 308150..309475 1 NC_009698.1 identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 309475 glvA-1 5400289 glvA-1 Clostridium botulinum A str. Hall maltose-6'-phosphate glucosidase YP_001386221.1 308150 D 441771 CDS YP_001386222.1 153936612 5400950 309638..311161 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system maltose/glucose-specfic transporter subunit IIBC 311161 5400950 CLC_0327 Clostridium botulinum A str. Hall PTS system maltose/glucose-specfic transporter subunit IIBC YP_001386222.1 309638 D 441771 CDS YP_001386223.1 153935393 5400648 complement(311212..311979) 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 311979 5400648 CLC_0328 Clostridium botulinum A str. Hall RpiR family transcriptional regulator YP_001386223.1 311212 R 441771 CDS YP_001386224.1 153934472 5400260 complement(311995..312774) 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 312774 5400260 CLC_0329 Clostridium botulinum A str. Hall RpiR family transcriptional regulator YP_001386224.1 311995 R 441771 CDS YP_001386225.1 153935092 5398432 313050..313532 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose family transporter subunit IIA 313532 5398432 CLC_0330 Clostridium botulinum A str. Hall PTS system glucose family transporter subunit IIA YP_001386225.1 313050 D 441771 CDS YP_001386226.1 153937704 5400087 313630..314406 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 314406 5400087 CLC_0331 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386226.1 313630 D 441771 CDS YP_001386227.1 153936458 5400723 314416..315465 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 315465 5400723 CLC_0332 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386227.1 314416 D 441771 CDS YP_001386228.1 153937388 5401674 315585..316355 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 316355 5401674 CLC_0333 Clostridium botulinum A str. Hall peptide ABC transporter ATP-binding protein YP_001386228.1 315585 D 441771 CDS YP_001386229.1 153934514 5399831 316369..318339 1 NC_009698.1 identified by match to protein family HMM PF02687; peptide ABC transporter permease 318339 5399831 CLC_0334 Clostridium botulinum A str. Hall peptide ABC transporter permease YP_001386229.1 316369 D 441771 CDS YP_001386230.1 153935439 5400172 318579..319793 1 NC_009698.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 319793 alr 5400172 alr Clostridium botulinum A str. Hall alanine racemase YP_001386230.1 318579 D 441771 CDS YP_001386231.1 153936922 5401413 320313..321884 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system glucose/glucoside family transporter subunit IIBC 321884 5401413 CLC_0336 Clostridium botulinum A str. Hall PTS system glucose/glucoside family transporter subunit IIBC YP_001386231.1 320313 D 441771 CDS YP_001386232.1 153937811 5398653 322200..323525 1 NC_009698.1 identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 323525 glvA-2 5398653 glvA-2 Clostridium botulinum A str. Hall maltose-6'-phosphate glucosidase YP_001386232.1 322200 D 441771 CDS YP_001386233.1 153934903 5398292 323839..324348 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose/glucoside family transporter subunit IIA 324348 5398292 CLC_0338 Clostridium botulinum A str. Hall PTS system glucose/glucoside family transporter subunit IIA YP_001386233.1 323839 D 441771 CDS YP_001386234.1 153935850 5401746 324631..325392 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; SIS domain-containing protein 325392 5401746 CLC_0339 Clostridium botulinum A str. Hall SIS domain-containing protein YP_001386234.1 324631 D 441771 CDS YP_001386235.1 153936809 5400263 complement(325429..325611) 1 NC_009698.1 hypothetical protein 325611 5400263 CLC_0340 Clostridium botulinum A str. Hall hypothetical protein YP_001386235.1 325429 R 441771 CDS YP_001386236.1 153937821 5401041 325880..326077 1 NC_009698.1 identified by match to protein family HMM PF00313; cold shock protein 326077 5401041 CLC_0341 Clostridium botulinum A str. Hall cold shock protein YP_001386236.1 325880 D 441771 CDS YP_001386237.1 153934541 5400495 326420..326974 1 NC_009698.1 identified by match to protein family HMM PF06210; hypothetical protein 326974 5400495 CLC_0342 Clostridium botulinum A str. Hall hypothetical protein YP_001386237.1 326420 D 441771 CDS YP_001386238.1 153936117 5400300 327409..327840 1 NC_009698.1 identified by match to protein family HMM PF02082; rrf2 family protein 327840 5400300 CLC_0343 Clostridium botulinum A str. Hall rrf2 family protein YP_001386238.1 327409 D 441771 CDS YP_001386239.1 153937558 5398257 327992..328597 1 NC_009698.1 identified by match to protein family HMM PF01323; 2-hydroxychromene-2-carboxylate isomerase 328597 5398257 CLC_0344 Clostridium botulinum A str. Hall 2-hydroxychromene-2-carboxylate isomerase YP_001386239.1 327992 D 441771 CDS YP_001386240.1 153935039 5400651 328624..329262 1 NC_009698.1 hypothetical protein 329262 5400651 CLC_0345 Clostridium botulinum A str. Hall hypothetical protein YP_001386240.1 328624 D 441771 CDS YP_001386241.1 153936409 5399802 329700..330461 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator 330461 5399802 CLC_0346 Clostridium botulinum A str. Hall transcriptional regulator YP_001386241.1 329700 D 441771 CDS YP_001386242.1 153937413 5400982 330580..332163 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; PTS system glucose/maltose-specfic transporter subunit IIBC 332163 5400982 CLC_0347 Clostridium botulinum A str. Hall PTS system glucose/maltose-specfic transporter subunit IIBC YP_001386242.1 330580 D 441771 CDS YP_001386243.1 153937411 5401275 332425..333759 1 NC_009698.1 identified by match to protein family HMM PF02056; maltose-6'-phosphate glucosidase 333759 glvA-3 5401275 glvA-3 Clostridium botulinum A str. Hall maltose-6'-phosphate glucosidase YP_001386243.1 332425 D 441771 CDS YP_001386244.1 153934685 5401320 333772..334245 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose/maltose-specific transporter subunit IIA 334245 5401320 CLC_0349 Clostridium botulinum A str. Hall PTS system glucose/maltose-specific transporter subunit IIA YP_001386244.1 333772 D 441771 CDS YP_001386245.1 153936055 5401129 334383..336098 1 NC_009698.1 identified by match to protein family HMM PF00920; dihydroxy-acid dehydratase 336098 ilvD 5401129 ilvD Clostridium botulinum A str. Hall dihydroxy-acid dehydratase YP_001386245.1 334383 D 441771 CDS YP_001386246.1 153936859 5399432 336150..336797 1 NC_009698.1 identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 336797 eda 5399432 eda Clostridium botulinum A str. Hall 2-dehydro-3-deoxyphosphogluconate aldolase YP_001386246.1 336150 D 441771 CDS YP_001386247.1 153937236 5400781 336799..337803 1 NC_009698.1 identified by match to protein family HMM PF00294; 2-dehydro-3-deoxygluconokinase 337803 5400781 CLC_0352 Clostridium botulinum A str. Hall 2-dehydro-3-deoxygluconokinase YP_001386247.1 336799 D 441771 CDS YP_001386248.2 532643393 5401557 338063..339862 1 NC_009698.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase 339862 ade 5401557 ade Clostridium botulinum A str. Hall adenine deaminase YP_001386248.2 338063 D 441771 CDS YP_001386249.1 153935658 5400658 340264..340941 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 340941 5400658 CLC_0354 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386249.1 340264 D 441771 CDS YP_001386250.1 153936434 5400042 340941..342326 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 342326 5400042 CLC_0355 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386250.1 340941 D 441771 CDS YP_001386251.1 153936733 5401801 342723..343691 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 343691 5401801 CLC_0356 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001386251.1 342723 D 441771 CDS YP_001386252.1 153937569 5401048 343675..344094 1 NC_009698.1 identified by match to protein family HMM PF04138; cell wall teichoic acid glycosylation protein GtcA 344094 5401048 CLC_0357 Clostridium botulinum A str. Hall cell wall teichoic acid glycosylation protein GtcA YP_001386252.1 343675 D 441771 CDS YP_001386253.1 153935234 5400423 344213..346486 1 NC_009698.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 346486 5400423 CLC_0358 Clostridium botulinum A str. Hall dolichyl-phosphate-mannose-protein mannosyltransferase YP_001386253.1 344213 D 441771 CDS YP_001386254.1 153935953 5401297 346827..347864 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 347864 5401297 CLC_0359 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386254.1 346827 D 441771 CDS YP_001386255.1 153935323 5399837 348128..349159 1 NC_009698.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 349159 5399837 CLC_0360 Clostridium botulinum A str. Hall iron ABC transporter substrate-binding protein YP_001386255.1 348128 D 441771 CDS YP_001386256.1 153936012 5399514 349162..350280 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 350280 5399514 CLC_0361 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386256.1 349162 D 441771 CDS YP_001386257.1 153937142 5399457 350282..351052 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 351052 5399457 CLC_0362 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001386257.1 350282 D 441771 CDS YP_001386258.1 153934683 5401829 351087..352415 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 352415 5401829 CLC_0363 Clostridium botulinum A str. Hall MATE efflux family protein YP_001386258.1 351087 D 441771 CDS YP_001386259.1 153935592 5398620 complement(352560..353531) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 353531 5398620 CLC_0364 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386259.1 352560 R 441771 CDS YP_001386260.1 153937304 5400025 353978..354916 1 NC_009698.1 identified by similarity to SP:P37580; match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 354916 5400025 CLC_0365 Clostridium botulinum A str. Hall iron ABC transporter substrate-binding protein YP_001386260.1 353978 D 441771 CDS YP_001386261.1 153934838 5399817 354977..355093 1 NC_009698.1 identified by Glimmer3; hypothetical protein 355093 5399817 CLC_0366 Clostridium botulinum A str. Hall hypothetical protein YP_001386261.1 354977 D 441771 CDS YP_001386262.1 153935780 5401330 complement(355255..356223) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 356223 5401330 CLC_0367 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386262.1 355255 R 441771 CDS YP_001386263.1 153936756 5398750 356541..357470 1 NC_009698.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 357470 5398750 CLC_0368 Clostridium botulinum A str. Hall iron ABC transporter substrate-binding protein YP_001386263.1 356541 D 441771 CDS YP_001386264.1 153935164 5400287 357497..358525 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 358525 5400287 CLC_0369 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386264.1 357497 D 441771 CDS YP_001386265.1 153934542 5400945 358522..359535 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 359535 5400945 CLC_0370 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386265.1 358522 D 441771 CDS YP_001386266.1 153935496 5399610 359546..360376 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 360376 5399610 CLC_0371 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001386266.1 359546 D 441771 CDS YP_001386267.1 153935555 5398258 360373..362097 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 362097 5398258 CLC_0372 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001386267.1 360373 D 441771 CDS YP_001386268.1 153935919 5399750 complement(362151..362531) 1 NC_009698.1 identified by match to protein family HMM PF01325; iron-dependent repressor 362531 5399750 CLC_0373 Clostridium botulinum A str. Hall iron-dependent repressor YP_001386268.1 362151 R 441771 CDS YP_001386269.1 153934932 5399418 363230..364531 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine/uracil permease 364531 5399418 CLC_0374 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001386269.1 363230 D 441771 CDS YP_001386270.1 153937838 5399106 364554..365126 1 NC_009698.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 365126 xpt-1 5399106 xpt-1 Clostridium botulinum A str. Hall xanthine phosphoribosyltransferase YP_001386270.1 364554 D 441771 CDS YP_001386271.1 153936909 5400756 365577..366269 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 366269 5400756 CLC_0376 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386271.1 365577 D 441771 CDS YP_001386272.1 153934663 5399223 366282..367262 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 367262 5399223 CLC_0377 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386272.1 366282 D 441771 CDS YP_001386273.1 153937124 5399082 367438..368295 1 NC_009698.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 368295 5399082 CLC_0378 Clostridium botulinum A str. Hall undecaprenyl pyrophosphate phosphatase YP_001386273.1 367438 D 441771 CDS YP_001386274.1 153937494 5400233 368310..369056 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 369056 5400233 CLC_0379 Clostridium botulinum A str. Hall peptide ABC transporter ATP-binding protein YP_001386274.1 368310 D 441771 CDS YP_001386275.1 153935627 5399009 369056..370918 1 NC_009698.1 identified by match to protein family HMM PF02687; peptide ABC transporter permease 370918 5399009 CLC_0380 Clostridium botulinum A str. Hall peptide ABC transporter permease YP_001386275.1 369056 D 441771 CDS YP_001386276.1 153935907 5398742 370942..371088 1 NC_009698.1 identified by Glimmer3; hypothetical protein 371088 5398742 CLC_0381 Clostridium botulinum A str. Hall hypothetical protein YP_001386276.1 370942 D 441771 CDS YP_001386277.1 153934501 5398451 371402..371758 1 NC_009698.1 identified by match to protein family HMM PF03788; LrgA family protein 371758 5398451 CLC_0382 Clostridium botulinum A str. Hall LrgA family protein YP_001386277.1 371402 D 441771 CDS YP_001386278.1 153937448 5399349 371761..372456 1 NC_009698.1 identified by match to protein family HMM PF04172; lrgB-like family protein 372456 5399349 CLC_0383 Clostridium botulinum A str. Hall lrgB-like family protein YP_001386278.1 371761 D 441771 CDS YP_001386279.1 153936320 5401811 372752..373402 1 NC_009698.1 lipoprotein 373402 5401811 CLC_0384 Clostridium botulinum A str. Hall lipoprotein YP_001386279.1 372752 D 441771 CDS YP_001386280.1 153937483 5401407 373786..374685 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 374685 5401407 CLC_0385 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001386280.1 373786 D 441771 CDS YP_001386281.1 153936726 5400840 374820..376328 1 NC_009698.1 identified by match to protein family HMM PF08903; hypothetical protein 376328 5400840 CLC_0386 Clostridium botulinum A str. Hall hypothetical protein YP_001386281.1 374820 D 441771 CDS YP_001386282.1 153935646 5401107 376652..377203 1 NC_009698.1 hypothetical protein 377203 5401107 CLC_0387 Clostridium botulinum A str. Hall hypothetical protein YP_001386282.1 376652 D 441771 CDS YP_001386283.1 153934885 5399571 377382..377849 1 NC_009698.1 hypothetical protein 377849 5399571 CLC_0388 Clostridium botulinum A str. Hall hypothetical protein YP_001386283.1 377382 D 441771 CDS YP_001386284.1 153934505 5400249 377842..378531 1 NC_009698.1 identified by match to protein family HMM PF04647; accessory gene regulator protein B 378531 5400249 CLC_0389 Clostridium botulinum A str. Hall accessory gene regulator protein B YP_001386284.1 377842 D 441771 CDS YP_001386285.1 153937195 5401089 378515..378649 1 NC_009698.1 lipoprotein 378649 5401089 CLC_0390 Clostridium botulinum A str. Hall lipoprotein YP_001386285.1 378515 D 441771 CDS YP_001386286.1 153935963 5401815 378721..380424 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00254; diguanylate cyclase 380424 5401815 CLC_0391 Clostridium botulinum A str. Hall diguanylate cyclase YP_001386286.1 378721 D 441771 CDS YP_001386287.1 153935236 5398703 380655..381164 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 381164 5398703 CLC_0392 Clostridium botulinum A str. Hall acetyltransferase YP_001386287.1 380655 D 441771 CDS YP_001386288.1 153936600 5398488 381561..382013 1 NC_009698.1 hypothetical protein 382013 5398488 CLC_0393 Clostridium botulinum A str. Hall hypothetical protein YP_001386288.1 381561 D 441771 CDS YP_001386289.1 153934988 5398894 382040..383887 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 383887 5398894 CLC_0394 Clostridium botulinum A str. Hall sensory box histidine kinase YP_001386289.1 382040 D 441771 CDS YP_001386290.1 153934648 5400354 384146..384583 1 NC_009698.1 hypothetical protein 384583 5400354 CLC_0395 Clostridium botulinum A str. Hall hypothetical protein YP_001386290.1 384146 D 441771 CDS YP_001386291.1 153935382 5398312 384570..385199 1 NC_009698.1 identified by match to protein family HMM PF04647; accessory gene regulator protein B 385199 5398312 CLC_0396 Clostridium botulinum A str. Hall accessory gene regulator protein B YP_001386291.1 384570 D 441771 CDS YP_001386292.1 153936997 5399097 385294..385428 1 NC_009698.1 identified by Glimmer3; hypothetical protein 385428 5399097 CLC_0397 Clostridium botulinum A str. Hall hypothetical protein YP_001386292.1 385294 D 441771 CDS YP_001386293.1 153937779 5400857 385509..387362 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 387362 5400857 CLC_0398 Clostridium botulinum A str. Hall sensory box histidine kinase YP_001386293.1 385509 D 441771 CDS YP_001386294.1 153935004 5398482 387595..388461 1 NC_009698.1 identified by match to protein family HMM PF01171; PP-loop family protein 388461 5398482 CLC_0399 Clostridium botulinum A str. Hall PP-loop family protein YP_001386294.1 387595 D 441771 CDS YP_001386295.1 153935772 5398726 complement(388585..389130) 1 NC_009698.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 389130 5398726 CLC_0400 Clostridium botulinum A str. Hall DNA-binding protein YP_001386295.1 388585 R 441771 CDS YP_001386296.1 153935063 5400285 389485..390891 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 390891 5400285 CLC_0401 Clostridium botulinum A str. Hall amino acid permease YP_001386296.1 389485 D 441771 CDS YP_001386297.1 153936720 5398611 391010..392092 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family metallopeptidase 392092 5398611 CLC_0402 Clostridium botulinum A str. Hall M24 family metallopeptidase YP_001386297.1 391010 D 441771 CDS YP_001386298.1 153937530 5400197 392520..395108 1 NC_009698.1 identified by match to protein family HMM PF00171; match to protein family HMM PF00465; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 395108 adhE 5400197 adhE Clostridium botulinum A str. Hall bifunctional acetaldehyde-CoA/alcohol dehydrogenase YP_001386298.1 392520 D 441771 CDS YP_001386299.1 153935222 5400052 395427..395714 1 NC_009698.1 hypothetical protein 395714 5400052 CLC_0404 Clostridium botulinum A str. Hall hypothetical protein YP_001386299.1 395427 D 441771 CDS YP_001386300.1 153936931 5398305 395777..396367 1 NC_009698.1 hypothetical protein 396367 5398305 CLC_0405 Clostridium botulinum A str. Hall hypothetical protein YP_001386300.1 395777 D 441771 CDS YP_001386301.1 153934569 5398364 complement(396643..397122) 1 NC_009698.1 hypothetical protein 397122 5398364 CLC_0406 Clostridium botulinum A str. Hall hypothetical protein YP_001386301.1 396643 R 441771 CDS YP_001386302.1 153937240 5401145 complement(397465..398475) 1 NC_009698.1 hypothetical protein 398475 5401145 CLC_0407 Clostridium botulinum A str. Hall hypothetical protein YP_001386302.1 397465 R 441771 CDS YP_001386303.1 153936486 5399297 398579..399106 1 NC_009698.1 identified by match to protein family HMM PF01569; PAP2 family protein 399106 5399297 CLC_0408 Clostridium botulinum A str. Hall PAP2 family protein YP_001386303.1 398579 D 441771 CDS YP_001386304.1 153935711 5399790 399517..400329 1 NC_009698.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 400329 5399790 CLC_0409 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001386304.1 399517 D 441771 CDS YP_001386305.1 153934962 5399626 400437..401123 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 401123 5399626 CLC_0410 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386305.1 400437 D 441771 CDS YP_001386306.1 153937672 5401074 401133..402527 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 402527 5401074 CLC_0411 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386306.1 401133 D 441771 CDS YP_001386307.1 153936706 5400075 402590..404080 1 NC_009698.1 lipoprotein 404080 5400075 CLC_0412 Clostridium botulinum A str. Hall lipoprotein YP_001386307.1 402590 D 441771 CDS YP_001386308.1 153936917 5401673 404124..404690 1 NC_009698.1 identified by match to protein family HMM PF06962; hypothetical protein 404690 5401673 CLC_0413 Clostridium botulinum A str. Hall hypothetical protein YP_001386308.1 404124 D 441771 CDS YP_001386309.1 153935942 5399114 404716..405390 1 NC_009698.1 identified by match to protein family HMM PF09335; DedA family protein 405390 5399114 CLC_0414 Clostridium botulinum A str. Hall DedA family protein YP_001386309.1 404716 D 441771 CDS YP_001386310.1 153934947 5398425 complement(405531..408209) 1 NC_009698.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM PF05228; match to protein family HMM TIGR00254; diguanylate cyclase 408209 5398425 CLC_0415 Clostridium botulinum A str. Hall diguanylate cyclase YP_001386310.1 405531 R 441771 CDS YP_001386311.1 153937425 5399924 complement(408409..409596) 1 NC_009698.1 hypothetical protein 409596 5399924 CLC_0416 Clostridium botulinum A str. Hall hypothetical protein YP_001386311.1 408409 R 441771 CDS YP_001386312.1 153935621 5401736 409849..411189 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 411189 5401736 CLC_0417 Clostridium botulinum A str. Hall MATE efflux family protein YP_001386312.1 409849 D 441771 CDS YP_001386313.1 153934899 5399171 411381..411947 1 NC_009698.1 identified by match to protein family HMM PF01966; HD domain-containing protein 411947 5399171 CLC_0418 Clostridium botulinum A str. Hall HD domain-containing protein YP_001386313.1 411381 D 441771 CDS YP_001386314.1 153937056 5399267 412259..413527 1 NC_009698.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 413527 5399267 CLC_0419 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001386314.1 412259 D 441771 CDS YP_001386315.1 153936339 5400928 complement(413662..414984) 1 NC_009698.1 identified by match to protein family HMM PF00266; class V aminotransferase 414984 5400928 CLC_0420 Clostridium botulinum A str. Hall class V aminotransferase YP_001386315.1 413662 R 441771 CDS YP_001386316.1 153936467 5398572 415371..416381 1 NC_009698.1 identified by match to protein family HMM PF03601; hypothetical protein 416381 5398572 CLC_0421 Clostridium botulinum A str. Hall hypothetical protein YP_001386316.1 415371 D 441771 CDS YP_001386317.1 153936463 5401401 416512..417186 1 NC_009698.1 hypothetical protein 417186 5401401 CLC_0422 Clostridium botulinum A str. Hall hypothetical protein YP_001386317.1 416512 D 441771 CDS YP_001386318.1 153936832 5398928 417132..417830 1 NC_009698.1 identified by match to protein family HMM PF00486; DNA-binding response regulator 417830 5398928 CLC_0423 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386318.1 417132 D 441771 CDS YP_001386319.1 153934845 5401180 417820..419334 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 419334 5401180 CLC_0424 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386319.1 417820 D 441771 CDS YP_001386320.1 153935356 5399630 419442..420857 1 NC_009698.1 identified by match to protein family HMM PF00474; sodium:solute symporter family protein 420857 5399630 CLC_0425 Clostridium botulinum A str. Hall sodium:solute symporter family protein YP_001386320.1 419442 D 441771 CDS YP_001386321.1 153936091 5399912 422087..423406 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; match to protein family HMM TIGR01945; RnfABCDGE type electron transport complex subunit C 423406 5399912 CLC_0426 Clostridium botulinum A str. Hall RnfABCDGE type electron transport complex subunit C YP_001386321.1 422087 D 441771 CDS YP_001386322.1 153937347 5400185 423429..424361 1 NC_009698.1 identified by match to protein family HMM PF03116; match to protein family HMM TIGR01946; RnfABCDGE type electron transport complex subunit D 424361 5400185 CLC_0427 Clostridium botulinum A str. Hall RnfABCDGE type electron transport complex subunit D YP_001386322.1 423429 D 441771 CDS YP_001386323.1 153937850 5399209 424361..425032 1 NC_009698.1 identified by match to protein family HMM PF04205; match to protein family HMM TIGR01947; RnfABCDGE type electron transport complex subunit G 425032 5399209 CLC_0428 Clostridium botulinum A str. Hall RnfABCDGE type electron transport complex subunit G YP_001386323.1 424361 D 441771 CDS YP_001386324.1 153934982 5399444 425043..425645 1 NC_009698.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 425645 5399444 CLC_0429 Clostridium botulinum A str. Hall electron transport complex protein RsxE YP_001386324.1 425043 D 441771 CDS YP_001386325.1 153935903 5398795 425696..426274 1 NC_009698.1 identified by match to protein family HMM PF02508; match to protein family HMM TIGR01943; RnfABCDGE type electron transport complex subunit A 426274 5398795 CLC_0430 Clostridium botulinum A str. Hall RnfABCDGE type electron transport complex subunit A YP_001386325.1 425696 D 441771 CDS YP_001386326.1 153936450 5399566 426288..427121 1 NC_009698.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 427121 5399566 CLC_0431 Clostridium botulinum A str. Hall ferredoxin YP_001386326.1 426288 D 441771 CDS YP_001386327.1 153934774 5398372 427501..428589 1 NC_009698.1 identified by match to protein family HMM PF04122; amidase 428589 5398372 CLC_0432 Clostridium botulinum A str. Hall amidase YP_001386327.1 427501 D 441771 CDS YP_001386328.1 153934531 5400602 complement(428755..429291) 1 NC_009698.1 identified by match to protein family HMM PF07456; hypothetical protein 429291 5400602 CLC_0433 Clostridium botulinum A str. Hall hypothetical protein YP_001386328.1 428755 R 441771 CDS YP_001386329.1 153937248 5399342 complement(429309..429701) 1 NC_009698.1 identified by match to protein family HMM PF07009; hypothetical protein 429701 5399342 CLC_0434 Clostridium botulinum A str. Hall hypothetical protein YP_001386329.1 429309 R 441771 CDS YP_001386330.1 153936735 5400479 complement(429816..430850) 1 NC_009698.1 identified by match to protein family HMM PF02424; apbE family protein 430850 5400479 CLC_0435 Clostridium botulinum A str. Hall apbE family protein YP_001386330.1 429816 R 441771 CDS YP_001386331.1 153935997 5400515 complement(431698..433752) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 433752 5400515 CLC_0436 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386331.1 431698 R 441771 CDS YP_001386332.1 153935844 5400425 complement(434429..436159) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease 436159 5400425 CLC_0437 Clostridium botulinum A str. Hall ATP-dependent metalloprotease YP_001386332.1 434429 R 441771 CDS YP_001386333.1 153935088 5398908 436379..437434 1 NC_009698.1 identified by match to protein family HMM PF06803; hypothetical protein 437434 5398908 CLC_0438 Clostridium botulinum A str. Hall hypothetical protein YP_001386333.1 436379 D 441771 CDS YP_001386334.1 153936460 5398346 437409..437858 1 NC_009698.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 437858 rnhA 5398346 rnhA Clostridium botulinum A str. Hall ribonuclease H YP_001386334.1 437409 D 441771 CDS YP_001386335.1 153935454 5400061 437921..438097 1 NC_009698.1 identified by Glimmer3; hypothetical protein 438097 5400061 CLC_0440 Clostridium botulinum A str. Hall hypothetical protein YP_001386335.1 437921 D 441771 CDS YP_001386336.1 153936558 5401177 438278..439582 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381; TPR repeat-containing DNA binding protein 439582 5401177 CLC_0441 Clostridium botulinum A str. Hall TPR repeat-containing DNA binding protein YP_001386336.1 438278 D 441771 CDS YP_001386337.1 153936802 5399952 439614..440867 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 440867 5399952 CLC_0442 Clostridium botulinum A str. Hall hypothetical protein YP_001386337.1 439614 D 441771 CDS YP_001386339.1 153934815 5398821 441348..442319 1 NC_009698.1 identified by similarity to GB:AAP09991.1; hypothetical protein 442319 5398821 CLC_0444 Clostridium botulinum A str. Hall hypothetical protein YP_001386339.1 441348 D 441771 CDS YP_001386340.1 153934876 5401298 442479..442658 1 NC_009698.1 identified by Glimmer3; hypothetical protein 442658 5401298 CLC_0445 Clostridium botulinum A str. Hall hypothetical protein YP_001386340.1 442479 D 441771 CDS YP_001386341.1 153935471 5400850 442689..443294 1 NC_009698.1 identified by match to protein family HMM PF01965; DJ-1/PfpI family protein 443294 5400850 CLC_0446 Clostridium botulinum A str. Hall DJ-1/PfpI family protein YP_001386341.1 442689 D 441771 CDS YP_008472677.1 532643406 5398515 443503..444429 1 NC_009698.1 hypothetical protein 444429 5398515 CLC_0448 Clostridium botulinum A str. Hall hypothetical protein YP_008472677.1 443503 D 441771 CDS YP_001386344.1 153935231 5398945 444793..447393 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346; clpB protein 447393 clpB 5398945 clpB Clostridium botulinum A str. Hall clpB protein YP_001386344.1 444793 D 441771 CDS YP_001386345.1 153935416 5400726 complement(448220..448684) 1 NC_009698.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 448684 5400726 CLC_0450 Clostridium botulinum A str. Hall AsnC family transcriptional regulator YP_001386345.1 448220 R 441771 CDS YP_001386346.1 153936302 5399834 449209..449583 1 NC_009698.1 hypothetical protein 449583 5399834 CLC_0451 Clostridium botulinum A str. Hall hypothetical protein YP_001386346.1 449209 D 441771 CDS YP_001386347.1 153936919 5400932 450207..451580 1 NC_009698.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid permease 451580 5400932 CLC_0452 Clostridium botulinum A str. Hall amino acid permease YP_001386347.1 450207 D 441771 CDS YP_001386348.1 153937788 5401280 452018..453367 1 NC_009698.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845; amino acid permease 453367 5401280 CLC_0453 Clostridium botulinum A str. Hall amino acid permease YP_001386348.1 452018 D 441771 CDS YP_001386349.1 153934915 5398427 453719..454228 1 NC_009698.1 identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase 454228 5398427 CLC_0454 Clostridium botulinum A str. Hall hexapeptide repeat-containing transferase YP_001386349.1 453719 D 441771 CDS YP_001386350.1 153936510 5400753 454273..455145 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 455145 5400753 CLC_0455 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386350.1 454273 D 441771 CDS YP_001386351.1 153937287 5401534 complement(455465..458083) 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01517; ATPase P 458083 5401534 CLC_0456 Clostridium botulinum A str. Hall ATPase P YP_001386351.1 455465 R 441771 CDS YP_001386352.1 153934566 5399422 complement(458377..458913) 1 NC_009698.1 identified by match to protein family HMM PF02417; chromate transporter protein 458913 5399422 CLC_0457 Clostridium botulinum A str. Hall chromate transporter protein YP_001386352.1 458377 R 441771 CDS YP_001386353.1 153935351 5401118 complement(458913..459449) 1 NC_009698.1 identified by match to protein family HMM PF02417; chromate transport protein 459449 5401118 CLC_0458 Clostridium botulinum A str. Hall chromate transport protein YP_001386353.1 458913 R 441771 CDS YP_001386354.1 153936976 5399294 459623..460213 1 NC_009698.1 identified by match to protein family HMM PF02452; PemK family protein 460213 5399294 CLC_0459 Clostridium botulinum A str. Hall PemK family protein YP_001386354.1 459623 D 441771 CDS YP_001386355.1 153937760 5399241 460660..461085 1 NC_009698.1 identified by match to protein family HMM PF03885; hypothetical protein 461085 5399241 CLC_0460 Clostridium botulinum A str. Hall hypothetical protein YP_001386355.1 460660 D 441771 CDS YP_001386356.1 153935328 5400613 complement(461291..463207) 1 NC_009698.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 463207 nadE 5400613 nadE Clostridium botulinum A str. Hall NAD synthetase YP_001386356.1 461291 R 441771 CDS YP_001386357.1 153937348 5401599 463429..463869 1 NC_009698.1 identified by match to protein family HMM PF01957; hypothetical protein 463869 5401599 CLC_0462 Clostridium botulinum A str. Hall hypothetical protein YP_001386357.1 463429 D 441771 CDS YP_001386358.1 153936563 5400007 463872..464867 1 NC_009698.1 identified by match to protein family HMM PF01145; hypothetical protein 464867 5400007 CLC_0463 Clostridium botulinum A str. Hall hypothetical protein YP_001386358.1 463872 D 441771 CDS YP_001386359.1 153936962 5399445 465230..466039 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 466039 5399445 CLC_0464 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386359.1 465230 D 441771 CDS YP_001386360.1 153935762 5399271 466259..467494 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195; xaa-pro aminopeptidase 467494 pepP 5399271 pepP Clostridium botulinum A str. Hall xaa-pro aminopeptidase YP_001386360.1 466259 D 441771 CDS YP_001386361.1 153934646 5398255 complement(468135..468863) 1 NC_009698.1 identified by match to protein family HMM PF07685; CobB/CobQ family glutamine amidotransferase 468863 5398255 CLC_0466 Clostridium botulinum A str. Hall CobB/CobQ family glutamine amidotransferase YP_001386361.1 468135 R 441771 CDS YP_001386362.1 153937855 5398449 complement(468921..470282) 1 NC_009698.1 identified by match to protein family HMM PF08245; match to protein family HMM PF08353; UDP-N-acetylmuramyl tripeptide synthetase-like protein 470282 5398449 CLC_0467 Clostridium botulinum A str. Hall UDP-N-acetylmuramyl tripeptide synthetase-like protein YP_001386362.1 468921 R 441771 CDS YP_001386363.1 153936592 5399095 470547..471527 1 NC_009698.1 identified by match to protein family HMM PF01238; mannose-6-phosphate isomerase 471527 manA 5399095 manA Clostridium botulinum A str. Hall mannose-6-phosphate isomerase YP_001386363.1 470547 D 441771 CDS YP_001386364.1 153935517 5401517 471876..472991 1 NC_009698.1 lipoprotein 472991 5401517 CLC_0469 Clostridium botulinum A str. Hall lipoprotein YP_001386364.1 471876 D 441771 CDS YP_001386365.1 153936387 5400772 473099..473953 1 NC_009698.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 473953 5400772 CLC_0470 Clostridium botulinum A str. Hall undecaprenyl pyrophosphate phosphatase YP_001386365.1 473099 D 441771 CDS YP_001386366.1 153937338 5401428 complement(479686..480549) 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 480549 5401428 CLC_0481 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386366.1 479686 R 441771 CDS YP_001386367.1 153934628 5400529 480686..481408 1 NC_009698.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 481408 5400529 CLC_0482 Clostridium botulinum A str. Hall 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001386367.1 480686 D 441771 CDS YP_001386368.1 153935335 5400888 482153..483514 1 NC_009698.1 identified by match to protein family HMM PF00682; HMGL-related enzyme 483514 5400888 CLC_0483 Clostridium botulinum A str. Hall HMGL-related enzyme YP_001386368.1 482153 D 441771 CDS YP_001386369.1 153937020 5399321 483658..485583 1 NC_009698.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 485583 5399321 CLC_0484 Clostridium botulinum A str. Hall aconitate hydratase YP_001386369.1 483658 D 441771 CDS YP_001386370.1 153937746 5400118 485619..486617 1 NC_009698.1 identified by match to protein family HMM PF00180; isocitrate/isopropylmalate family dehydrogenase 486617 5400118 CLC_0485 Clostridium botulinum A str. Hall isocitrate/isopropylmalate family dehydrogenase YP_001386370.1 485619 D 441771 CDS YP_001386371.1 153936994 5401691 486869..487651 1 NC_009698.1 identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 487651 5401691 CLC_0486 Clostridium botulinum A str. Hall polar amino acid ABC transporter ATP-binding protein YP_001386371.1 486869 D 441771 CDS YP_001386372.1 153937612 5399723 488170..489936 1 NC_009698.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606; Na+/H+ antiporter family protein 489936 5399723 CLC_0487 Clostridium botulinum A str. Hall Na+/H+ antiporter family protein YP_001386372.1 488170 D 441771 CDS YP_001386373.1 153935017 5400863 complement(489963..490178) 1 NC_009698.1 identified by match to protein family HMM PF04070; hypothetical protein 490178 5400863 CLC_0488 Clostridium botulinum A str. Hall hypothetical protein YP_001386373.1 489963 R 441771 CDS YP_001386374.1 153935836 5400952 complement(490266..490649) 1 NC_009698.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 490649 panD 5400952 panD Clostridium botulinum A str. Hall aspartate alpha-decarboxylase YP_001386374.1 490266 R 441771 CDS YP_001386375.1 153934894 5398381 complement(490798..491643) 1 NC_009698.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 491643 panC 5398381 panC Clostridium botulinum A str. Hall pantoate--beta-alanine ligase YP_001386375.1 490798 R 441771 CDS YP_001386376.1 153937429 5400996 complement(491698..492525) 1 NC_009698.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 492525 panB 5400996 panB Clostridium botulinum A str. Hall 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001386376.1 491698 R 441771 CDS YP_001386377.1 153936482 5398383 493326..496769 1 NC_009698.1 identified by match to protein family HMM TIGR02773; ATP-dependent nuclease subunit B 496769 addB 5398383 addB Clostridium botulinum A str. Hall ATP-dependent nuclease subunit B YP_001386377.1 493326 D 441771 CDS YP_001386378.1 153936811 5400342 complement(497058..498272) 1 NC_009698.1 ABC transporter permease 498272 5400342 CLC_0493 Clostridium botulinum A str. Hall ABC transporter permease YP_001386378.1 497058 R 441771 CDS YP_001386379.1 153935822 5400497 complement(498262..498978) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 498978 5400497 CLC_0494 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386379.1 498262 R 441771 CDS YP_001386380.1 153935316 5398820 complement(499011..499961) 1 NC_009698.1 identified by similarity to GB:AAS44016.1; hypothetical protein 499961 5398820 CLC_0495 Clostridium botulinum A str. Hall hypothetical protein YP_001386380.1 499011 R 441771 CDS YP_001386381.1 153937175 5400974 complement(499969..500289) 1 NC_009698.1 PadR family transcriptional regulator 500289 5400974 CLC_0496 Clostridium botulinum A str. Hall PadR family transcriptional regulator YP_001386381.1 499969 R 441771 CDS YP_001386382.1 153936383 5398615 500630..502798 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 502798 5398615 CLC_0497 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001386382.1 500630 D 441771 CDS YP_001386383.1 153937180 5401377 502810..503106 1 NC_009698.1 identified by Glimmer3; hypothetical protein 503106 5401377 CLC_0498 Clostridium botulinum A str. Hall hypothetical protein YP_001386383.1 502810 D 441771 CDS YP_001386384.1 153936555 5399017 503232..503414 1 NC_009698.1 identified by Glimmer3; hypothetical protein 503414 5399017 CLC_0499 Clostridium botulinum A str. Hall hypothetical protein YP_001386384.1 503232 D 441771 CDS YP_001386385.1 153937648 5400361 503506..503685 1 NC_009698.1 identified by Glimmer3; hypothetical protein 503685 5400361 CLC_0500 Clostridium botulinum A str. Hall hypothetical protein YP_001386385.1 503506 D 441771 CDS YP_001386386.1 153937371 5401540 503898..505640 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; multidrug export ATP-binding protein/permease 505640 5401540 CLC_0501 Clostridium botulinum A str. Hall multidrug export ATP-binding protein/permease YP_001386386.1 503898 D 441771 CDS YP_001386387.1 153935254 5400303 complement(505819..506205) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 506205 5400303 CLC_0502 Clostridium botulinum A str. Hall hypothetical protein YP_001386387.1 505819 R 441771 CDS YP_001386388.1 153935984 5400215 506512..507162 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 507162 5400215 CLC_0503 Clostridium botulinum A str. Hall hypothetical protein YP_001386388.1 506512 D 441771 CDS YP_001386389.1 153936765 5400429 507165..507851 1 NC_009698.1 hypothetical protein 507851 5400429 CLC_0504 Clostridium botulinum A str. Hall hypothetical protein YP_001386389.1 507165 D 441771 CDS YP_001386390.1 153937520 5400067 complement(508100..508708) 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 508708 5400067 CLC_0505 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001386390.1 508100 R 441771 CDS YP_001386391.1 153936822 5401551 508953..509624 1 NC_009698.1 identified by match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 509624 hypB 5401551 hypB Clostridium botulinum A str. Hall hydrogenase nickel incorporation protein HypB YP_001386391.1 508953 D 441771 CDS YP_001386392.1 153937564 5399991 509860..512538 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 512538 5399991 CLC_0507 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001386392.1 509860 D 441771 CDS YP_001386393.1 153937380 5399199 512594..512935 1 NC_009698.1 identified by match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 512935 hypA 5399199 hypA Clostridium botulinum A str. Hall hydrogenase nickel incorporation protein HypA YP_001386393.1 512594 D 441771 CDS YP_001386394.1 153934697 5401422 512974..513960 1 NC_009698.1 hypothetical protein 513960 5401422 CLC_0509 Clostridium botulinum A str. Hall hypothetical protein YP_001386394.1 512974 D 441771 CDS YP_001386395.1 153937067 5401767 complement(514134..514622) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 514622 5401767 CLC_0510 Clostridium botulinum A str. Hall hypothetical protein YP_001386395.1 514134 R 441771 CDS YP_001386396.1 153935206 5401174 514993..518832 1 NC_009698.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785; recombination helicase AddA 518832 addA 5401174 addA Clostridium botulinum A str. Hall recombination helicase AddA YP_001386396.1 514993 D 441771 CDS YP_001386397.1 153936163 5400698 518972..520663 1 NC_009698.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 520663 5400698 CLC_0512 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386397.1 518972 D 441771 CDS YP_001386398.1 153936996 5398246 520740..521966 1 NC_009698.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 521966 pepT 5398246 pepT Clostridium botulinum A str. Hall peptidase T YP_001386398.1 520740 D 441771 CDS YP_001386399.1 153936723 5401246 complement(522241..523173) 1 NC_009698.1 identified by match to protein family HMM PF01734; phospholipase 523173 5401246 CLC_0514 Clostridium botulinum A str. Hall phospholipase YP_001386399.1 522241 R 441771 CDS YP_001386400.1 153937479 5398481 523745..524461 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 524461 5398481 CLC_0515 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386400.1 523745 D 441771 CDS YP_001386401.1 153935395 5400055 524667..525140 1 NC_009698.1 identified by match to protein family HMM PF00903; glyoxalase 525140 5400055 CLC_0516 Clostridium botulinum A str. Hall glyoxalase YP_001386401.1 524667 D 441771 CDS YP_001386402.1 153936608 5399234 525100..525237 1 NC_009698.1 identified by Glimmer3; hypothetical protein 525237 5399234 CLC_0517 Clostridium botulinum A str. Hall hypothetical protein YP_001386402.1 525100 D 441771 CDS YP_001386403.1 153935314 5398434 525541..526962 1 NC_009698.1 identified by match to protein family HMM PF04122; N-acetylmuramoyl-L-alanine amidase 526962 5398434 CLC_0518 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001386403.1 525541 D 441771 CDS YP_001386404.1 153935969 5400255 complement(527170..527805) 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 527805 5400255 CLC_0519 Clostridium botulinum A str. Hall His/Glu/Gln/Arg/opine ABC transporter permease YP_001386404.1 527170 R 441771 CDS YP_001386405.1 153937497 5400972 complement(527818..528621) 1 NC_009698.1 identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 528621 5400972 CLC_0520 Clostridium botulinum A str. Hall polar amino acid ABC transporter amino acid-binding protein YP_001386405.1 527818 R 441771 CDS YP_001386406.1 153935218 5400223 528842..529570 1 NC_009698.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 529570 5400223 CLC_0521 Clostridium botulinum A str. Hall hypothetical protein YP_001386406.1 528842 D 441771 CDS YP_001386407.1 153936975 5398745 complement(529919..531130) 1 NC_009698.1 identified by match to protein family HMM PF00563; match to protein family HMM PF08668; diguanylate phosphodiesterase 531130 5398745 CLC_0522 Clostridium botulinum A str. Hall diguanylate phosphodiesterase YP_001386407.1 529919 R 441771 CDS YP_001386408.1 153937705 5400418 complement(531396..532013) 1 NC_009698.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 532013 thiE 5400418 thiE Clostridium botulinum A str. Hall thiamine-phosphate pyrophosphorylase YP_001386408.1 531396 R 441771 CDS YP_001386409.1 153937668 5400612 complement(532004..532795) 1 NC_009698.1 identified by match to protein family HMM PF02110; match to protein family HMM TIGR00694; hydroxyethylthiazole kinase 532795 thiM-1 5400612 thiM-1 Clostridium botulinum A str. Hall hydroxyethylthiazole kinase YP_001386409.1 532004 R 441771 CDS YP_001386410.1 153935614 5401675 complement(533027..533827) 1 NC_009698.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 533827 thiD-1 5401675 thiD-1 Clostridium botulinum A str. Hall phosphomethylpyrimidine kinase YP_001386410.1 533027 R 441771 CDS YP_001386411.1 153937340 5401669 534839..535741 1 NC_009698.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 535741 ddl 5401669 ddl Clostridium botulinum A str. Hall D-alanine--D-alanine ligase YP_001386411.1 534839 D 441771 CDS YP_001386412.1 153935064 5400458 535897..537039 1 NC_009698.1 identified by match to protein family HMM PF01094; high-affinity branched-chain amino acid ABC transporter amino acid-binding protein 537039 5400458 CLC_0527 Clostridium botulinum A str. Hall high-affinity branched-chain amino acid ABC transporter amino acid-binding protein YP_001386412.1 535897 D 441771 CDS YP_001386413.1 153936150 5400531 537043..537915 1 NC_009698.1 identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 537915 5400531 CLC_0528 Clostridium botulinum A str. Hall high-affinity branched-chain amino acid ABC transporter permease YP_001386413.1 537043 D 441771 CDS YP_001386414.1 153936686 5401055 537916..538860 1 NC_009698.1 identified by match to protein family HMM PF02653; high-affinity branched-chain amino acid ABC transporter permease 538860 5401055 CLC_0529 Clostridium botulinum A str. Hall high-affinity branched-chain amino acid ABC transporter permease YP_001386414.1 537916 D 441771 CDS YP_001386415.1 153934629 5398561 538872..539609 1 NC_009698.1 identified by match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein 539609 5398561 CLC_0530 Clostridium botulinum A str. Hall high-affinity branched chain amino acid ABC transporter ATP-binding protein YP_001386415.1 538872 D 441771 CDS YP_001386416.1 153937335 5400989 539611..540312 1 NC_009698.1 identified by match to protein family HMM PF00005; high-affinity branched chain amino acid ABC transporter ATP-binding protein 540312 5400989 CLC_0531 Clostridium botulinum A str. Hall high-affinity branched chain amino acid ABC transporter ATP-binding protein YP_001386416.1 539611 D 441771 CDS YP_001386417.1 153936252 5400889 540341..541117 1 NC_009698.1 identified by match to protein family HMM PF02596; hypothetical protein 541117 5400889 CLC_0532 Clostridium botulinum A str. Hall hypothetical protein YP_001386417.1 540341 D 441771 CDS YP_001386418.1 153935148 5398805 542275..542715 1 NC_009698.1 hypothetical protein 542715 5398805 CLC_0534 Clostridium botulinum A str. Hall hypothetical protein YP_001386418.1 542275 D 441771 CDS YP_001386419.1 153937629 5399035 542857..544308 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 544308 5399035 CLC_0535 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001386419.1 542857 D 441771 CDS YP_001386420.1 153936635 5399730 544369..544938 1 NC_009698.1 identified by match to protein family HMM PF04011; hypothetical protein 544938 5399730 CLC_0536 Clostridium botulinum A str. Hall hypothetical protein YP_001386420.1 544369 D 441771 CDS YP_001386421.1 153936820 5399011 544948..545784 1 NC_009698.1 identified by match to protein family HMM PF04536; lipoprotein 545784 5399011 CLC_0537 Clostridium botulinum A str. Hall lipoprotein YP_001386421.1 544948 D 441771 CDS YP_001386422.1 153936498 5399584 546303..547163 1 NC_009698.1 identified by match to protein family HMM PF04536; hypothetical protein 547163 5399584 CLC_0538 Clostridium botulinum A str. Hall hypothetical protein YP_001386422.1 546303 D 441771 CDS YP_001386423.1 153935574 5399989 547437..548330 1 NC_009698.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 548330 5399989 CLC_0539 Clostridium botulinum A str. Hall NUDIX family hydrolase YP_001386423.1 547437 D 441771 CDS YP_001386424.1 153936795 5399040 548464..548946 1 NC_009698.1 identified by Glimmer3; hypothetical protein 548946 5399040 CLC_0540 Clostridium botulinum A str. Hall hypothetical protein YP_001386424.1 548464 D 441771 CDS YP_001386425.1 153937250 5398914 549122..549646 1 NC_009698.1 hypothetical protein 549646 5398914 CLC_0541 Clostridium botulinum A str. Hall hypothetical protein YP_001386425.1 549122 D 441771 CDS YP_001386426.1 153934779 5401033 549648..550238 1 NC_009698.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methlytransferase-like protein 550238 5401033 CLC_0542 Clostridium botulinum A str. Hall methlytransferase-like protein YP_001386426.1 549648 D 441771 CDS YP_001386427.1 153935287 5399144 complement(550324..550563) 1 NC_009698.1 hypothetical protein 550563 5399144 CLC_0543 Clostridium botulinum A str. Hall hypothetical protein YP_001386427.1 550324 R 441771 CDS YP_001386428.1 153936045 5400739 complement(550584..551066) 1 NC_009698.1 hypothetical protein 551066 5400739 CLC_0544 Clostridium botulinum A str. Hall hypothetical protein YP_001386428.1 550584 R 441771 CDS YP_001386430.1 153937118 5398232 551812..553041 1 NC_009698.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619; nuclease SbcCD subunit D 553041 5398232 CLC_0546 Clostridium botulinum A str. Hall nuclease SbcCD subunit D YP_001386430.1 551812 D 441771 CDS YP_001386431.1 153934920 5399829 553016..556546 1 NC_009698.1 exonuclease SbcC 556546 sbcC 5399829 sbcC Clostridium botulinum A str. Hall exonuclease SbcC YP_001386431.1 553016 D 441771 CDS YP_001386432.1 153935888 5400487 556574..557122 1 NC_009698.1 identified by match to protein family HMM PF00293; NUDIX family hydrolase 557122 5400487 CLC_0548 Clostridium botulinum A str. Hall NUDIX family hydrolase YP_001386432.1 556574 D 441771 CDS YP_001386433.1 153935648 5398762 557933..558784 1 NC_009698.1 identified by match to protein family HMM PF02588; hypothetical protein 558784 5398762 CLC_0549 Clostridium botulinum A str. Hall hypothetical protein YP_001386433.1 557933 D 441771 CDS YP_001386435.1 153937186 5401610 559689..561917 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase 561917 cadA 5401610 cadA Clostridium botulinum A str. Hall cadmium-translocating P-type ATPase YP_001386435.1 559689 D 441771 CDS YP_001386436.1 153935319 5398851 562565..562774 1 NC_009698.1 identified by Glimmer3; hypothetical protein 562774 5398851 CLC_0553 Clostridium botulinum A str. Hall hypothetical protein YP_001386436.1 562565 D 441771 CDS YP_001386437.1 153935435 5398899 563655..564002 1 NC_009698.1 hypothetical protein 564002 5398899 CLC_0554 Clostridium botulinum A str. Hall hypothetical protein YP_001386437.1 563655 D 441771 CDS YP_001386438.1 153936587 5401010 complement(564021..564170) 1 NC_009698.1 hypothetical protein 564170 5401010 CLC_0555 Clostridium botulinum A str. Hall hypothetical protein YP_001386438.1 564021 R 441771 CDS YP_001386439.1 153936421 5401360 564688..565497 1 NC_009698.1 hypothetical protein 565497 5401360 CLC_0556 Clostridium botulinum A str. Hall hypothetical protein YP_001386439.1 564688 D 441771 CDS YP_001386440.1 153937284 5398337 566454..567830 1 NC_009698.1 identified by match to protein family HMM PF02562; PhoH family protein 567830 5398337 CLC_0557 Clostridium botulinum A str. Hall PhoH family protein YP_001386440.1 566454 D 441771 CDS YP_001386441.1 153934834 5399600 568098..569102 1 NC_009698.1 hypothetical protein 569102 5399600 CLC_0558 Clostridium botulinum A str. Hall hypothetical protein YP_001386441.1 568098 D 441771 CDS YP_001386442.1 153935548 5401115 569112..570128 1 NC_009698.1 hypothetical protein 570128 5401115 CLC_0559 Clostridium botulinum A str. Hall hypothetical protein YP_001386442.1 569112 D 441771 CDS YP_001386443.1 153934548 5401617 570448..570621 1 NC_009698.1 identified by Glimmer3; hypothetical protein 570621 5401617 CLC_0560 Clostridium botulinum A str. Hall hypothetical protein YP_001386443.1 570448 D 441771 CDS YP_001386444.1 153935433 5401157 570786..571742 1 NC_009698.1 streptolysin associated protein SagB 571742 sagB 5401157 sagB Clostridium botulinum A str. Hall streptolysin associated protein SagB YP_001386444.1 570786 D 441771 CDS YP_001386445.1 153937765 5399277 571746..572828 1 NC_009698.1 streptolysin associated protein SagC 572828 sagC 5399277 sagC Clostridium botulinum A str. Hall streptolysin associated protein SagC YP_001386445.1 571746 D 441771 CDS YP_001386446.1 153935261 5401358 572844..574202 1 NC_009698.1 identified by match to protein family HMM PF02624; streptolysin associated protein SagD 574202 sagD 5401358 sagD Clostridium botulinum A str. Hall streptolysin associated protein SagD YP_001386446.1 572844 D 441771 CDS YP_001386447.1 153935889 5401577 574177..574815 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 574815 5401577 CLC_0564 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386447.1 574177 D 441771 CDS YP_001386448.1 153936484 5399621 574823..575551 1 NC_009698.1 hypothetical protein 575551 5399621 CLC_0565 Clostridium botulinum A str. Hall hypothetical protein YP_001386448.1 574823 D 441771 CDS YP_001386449.1 153937440 5399084 575860..576792 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein SagG 576792 sagG 5399084 sagG Clostridium botulinum A str. Hall ABC transporter ATP-binding protein SagG YP_001386449.1 575860 D 441771 CDS YP_001386450.1 153934517 5399624 576804..577928 1 NC_009698.1 identified by match to protein family HMM PF01061; ABC transporter ATP-binding protein/permease SagH 577928 sagH 5399624 sagH Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease SagH YP_001386450.1 576804 D 441771 CDS YP_001386451.1 153937764 5399437 577930..579072 1 NC_009698.1 identified by match to protein family HMM PF01061; drug ABC transporter ATP-binding protein/permease 579072 sagI 5399437 sagI Clostridium botulinum A str. Hall drug ABC transporter ATP-binding protein/permease YP_001386451.1 577930 D 441771 CDS YP_001386452.1 153937057 5401263 579200..579850 1 NC_009698.1 identified by match to protein family HMM PF02163; metalloprotease 579850 5401263 CLC_0569 Clostridium botulinum A str. Hall metalloprotease YP_001386452.1 579200 D 441771 CDS YP_001386453.1 153936326 5401576 complement(580318..580788) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 580788 5401576 CLC_0570 Clostridium botulinum A str. Hall hypothetical protein YP_001386453.1 580318 R 441771 CDS YP_001386454.1 153935570 5398573 complement(580906..582168) 1 NC_009698.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600; arsenical pump family protein 582168 5398573 CLC_0571 Clostridium botulinum A str. Hall arsenical pump family protein YP_001386454.1 580906 R 441771 CDS YP_001386455.1 153934859 5400704 complement(582295..583707) 1 NC_009698.1 hypothetical protein 583707 5400704 CLC_0572 Clostridium botulinum A str. Hall hypothetical protein YP_001386455.1 582295 R 441771 CDS YP_001386456.1 153936665 5399680 583983..584636 1 NC_009698.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 584636 trmB 5399680 trmB Clostridium botulinum A str. Hall tRNA (guanine-N(7)-)-methyltransferase YP_001386456.1 583983 D 441771 CDS YP_001386457.1 153936796 5398327 584849..585112 1 NC_009698.1 hypothetical protein 585112 5398327 CLC_0574 Clostridium botulinum A str. Hall hypothetical protein YP_001386457.1 584849 D 441771 CDS YP_001386458.1 153936039 5401793 complement(585207..585701) 1 NC_009698.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 585701 tpx 5401793 tpx Clostridium botulinum A str. Hall thiol peroxidase YP_001386458.1 585207 R 441771 CDS YP_001386459.1 153934662 5400137 586072..586815 1 NC_009698.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 586815 fabG 5400137 fabG Clostridium botulinum A str. Hall 3-ketoacyl-ACP reductase YP_001386459.1 586072 D 441771 CDS YP_001386460.1 153937130 5399860 586878..587831 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 587831 5399860 CLC_0577 Clostridium botulinum A str. Hall response regulator YP_001386460.1 586878 D 441771 CDS YP_001386461.1 153937339 5400232 complement(587955..590111) 1 NC_009698.1 identified by match to protein family HMM PF00877; match to protein family HMM PF05257; match to protein family HMM PF06347; match to protein family HMM PF08239; NlpC/P60 family protein 590111 5400232 CLC_0578 Clostridium botulinum A str. Hall NlpC/P60 family protein YP_001386461.1 587955 R 441771 CDS YP_001386462.1 153936357 5399907 590419..591363 1 NC_009698.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 591363 5399907 CLC_0579 Clostridium botulinum A str. Hall alpha/beta hydrolase YP_001386462.1 590419 D 441771 CDS YP_001386463.1 153937508 5400530 591626..592873 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 592873 5400530 CLC_0580 Clostridium botulinum A str. Hall response regulator YP_001386463.1 591626 D 441771 CDS YP_001386464.1 153936518 5401836 593170..593754 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 593754 5401836 CLC_0581 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001386464.1 593170 D 441771 CDS YP_001386465.1 153936001 5400330 593790..595814 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 595814 5400330 CLC_0582 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386465.1 593790 D 441771 CDS YP_001386466.1 153935070 5400884 596019..596813 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 596813 5400884 CLC_0583 Clostridium botulinum A str. Hall response regulator YP_001386466.1 596019 D 441771 CDS YP_001386467.1 153937368 5400102 597295..598572 1 NC_009698.1 identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase 598572 serS-2 5400102 serS-2 Clostridium botulinum A str. Hall seryl-tRNA synthetase YP_001386467.1 597295 D 441771 CDS YP_001386468.1 153936609 5400122 599150..601504 1 NC_009698.1 identified by match to protein family HMM PF06733; ATP-dependent helicase 601504 5400122 CLC_0585 Clostridium botulinum A str. Hall ATP-dependent helicase YP_001386468.1 599150 D 441771 CDS YP_001386469.1 153935238 5399431 complement(601795..601986) 1 NC_009698.1 hypothetical protein 601986 5399431 CLC_0586 Clostridium botulinum A str. Hall hypothetical protein YP_001386469.1 601795 R 441771 CDS YP_001386470.1 153934508 5400256 complement(602316..602936) 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080; match to protein family HMM PF08279; GntR family transcriptional regulator 602936 5400256 CLC_0587 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001386470.1 602316 R 441771 CDS YP_001386471.1 153936762 5398896 603191..604144 1 NC_009698.1 identified by match to protein family HMM PF01262; N(5)-(carboxyethyl)ornithine synthase 604144 ceo 5398896 ceo Clostridium botulinum A str. Hall N(5)-(carboxyethyl)ornithine synthase YP_001386471.1 603191 D 441771 CDS YP_001386472.1 153935979 5399140 complement(604348..606354) 1 NC_009698.1 identified by match to protein family HMM PF06874; fructose-1,6-bisphosphatase 606354 5399140 CLC_0589 Clostridium botulinum A str. Hall fructose-1,6-bisphosphatase YP_001386472.1 604348 R 441771 CDS YP_001386473.1 153936724 5400064 606638..607000 1 NC_009698.1 identified by Glimmer3; hypothetical protein 607000 5400064 CLC_0590 Clostridium botulinum A str. Hall hypothetical protein YP_001386473.1 606638 D 441771 CDS YP_001386474.1 153936424 5401514 607175..607588 1 NC_009698.1 identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481; hemerythrin-like metal-binding domain-containing protein 607588 5401514 CLC_0591 Clostridium botulinum A str. Hall hemerythrin-like metal-binding domain-containing protein YP_001386474.1 607175 D 441771 CDS YP_001386475.1 153935245 5400056 complement(607802..608497) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 608497 5400056 CLC_0592 Clostridium botulinum A str. Hall hypothetical protein YP_001386475.1 607802 R 441771 CDS YP_001386476.1 153937514 5398582 609236..609658 1 NC_009698.1 identified by Glimmer3; hypothetical protein 609658 5398582 CLC_0593 Clostridium botulinum A str. Hall hypothetical protein YP_001386476.1 609236 D 441771 CDS YP_001386477.1 153936872 5399682 complement(609934..610584) 1 NC_009698.1 identified by match to protein family HMM PF02777; Fe/Mn family superoxide dismutase 610584 5399682 CLC_0594 Clostridium botulinum A str. Hall Fe/Mn family superoxide dismutase YP_001386477.1 609934 R 441771 CDS YP_001386478.1 153935440 5401563 610777..611616 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 611616 5401563 CLC_0595 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386478.1 610777 D 441771 CDS YP_001386479.1 153934574 5400270 complement(611714..612013) 1 NC_009698.1 hypothetical protein 612013 5400270 CLC_0596 Clostridium botulinum A str. Hall hypothetical protein YP_001386479.1 611714 R 441771 CDS YP_001386480.1 153937405 5398654 complement(612161..614014) 1 NC_009698.1 hypothetical protein 614014 5398654 CLC_0597 Clostridium botulinum A str. Hall hypothetical protein YP_001386480.1 612161 R 441771 CDS YP_001386482.1 153934934 5400718 complement(614740..615189) 1 NC_009698.1 hypothetical protein 615189 5400718 CLC_0599 Clostridium botulinum A str. Hall hypothetical protein YP_001386482.1 614740 R 441771 CDS YP_001386483.1 153936176 5401364 complement(615607..615798) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 615798 5401364 CLC_0600 Clostridium botulinum A str. Hall DNA-binding protein YP_001386483.1 615607 R 441771 CDS YP_001386484.1 153935669 5400758 complement(615776..616237) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 616237 5400758 CLC_0601 Clostridium botulinum A str. Hall acetyltransferase YP_001386484.1 615776 R 441771 CDS YP_001386485.1 153935915 5401807 616621..616833 1 NC_009698.1 identified by match to protein family HMM PF04324; (2Fe-2S)-binding protein 616833 5401807 CLC_0602 Clostridium botulinum A str. Hall (2Fe-2S)-binding protein YP_001386485.1 616621 D 441771 CDS YP_001386486.1 153934851 5401727 617305..617442 1 NC_009698.1 identified by Glimmer3; hypothetical protein 617442 5401727 CLC_0603 Clostridium botulinum A str. Hall hypothetical protein YP_001386486.1 617305 D 441771 CDS YP_001386488.1 153936925 5398940 618975..619484 1 NC_009698.1 identified by Glimmer3; hypothetical protein 619484 5398940 CLC_0606 Clostridium botulinum A str. Hall hypothetical protein YP_001386488.1 618975 D 441771 CDS YP_001386489.1 153936112 5398697 619494..621137 1 NC_009698.1 identified by match to protein family HMM PF02554; carbon starvation protein CstA 621137 5398697 CLC_0607 Clostridium botulinum A str. Hall carbon starvation protein CstA YP_001386489.1 619494 D 441771 CDS YP_001386490.1 153935071 5398295 621598..622287 1 NC_009698.1 hypothetical protein 622287 5398295 CLC_0608 Clostridium botulinum A str. Hall hypothetical protein YP_001386490.1 621598 D 441771 CDS YP_001386491.1 153937323 5400835 623207..625198 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 625198 5400835 CLC_0609 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386491.1 623207 D 441771 CDS YP_001386492.1 153934918 5399522 627675..628076 1 NC_009698.1 identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein 628076 mscL 5399522 mscL Clostridium botulinum A str. Hall large conductance mechanosensitive channel protein YP_001386492.1 627675 D 441771 CDS YP_001386493.1 153936119 5400034 628442..629125 1 NC_009698.1 identified by match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 629125 5400034 CLC_0612 Clostridium botulinum A str. Hall proton-coupled thiamine transporter YuaJ YP_001386493.1 628442 D 441771 CDS YP_001386494.1 153936846 5398760 complement(629258..629395) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 629395 5398760 CLC_0613 Clostridium botulinum A str. Hall hypothetical protein YP_001386494.1 629258 R 441771 CDS YP_001386495.1 153937319 5400653 629649..630785 1 NC_009698.1 identified by match to protein family HMM PF02810; SecC motif-containing protein 630785 5400653 CLC_0614 Clostridium botulinum A str. Hall SecC motif-containing protein YP_001386495.1 629649 D 441771 CDS YP_001386496.1 153934632 5401720 631273..631653 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 631653 5401720 CLC_0615 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001386496.1 631273 D 441771 CDS YP_001386497.1 153934936 5399518 631646..632341 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 632341 5399518 CLC_0616 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386497.1 631646 D 441771 CDS YP_001386498.1 153936578 5399546 632341..633102 1 NC_009698.1 ABC transporter permease 633102 5399546 CLC_0617 Clostridium botulinum A str. Hall ABC transporter permease YP_001386498.1 632341 D 441771 CDS YP_001386499.1 153936869 5398340 633919..635001 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187; spermidine/putrescine ABC transporter ATP-binding protein 635001 potA 5398340 potA Clostridium botulinum A str. Hall spermidine/putrescine ABC transporter ATP-binding protein YP_001386499.1 633919 D 441771 CDS YP_001386500.1 153935952 5399180 635001..635960 1 NC_009698.1 identified by match to protein family HMM PF00528; spermidine/putrescine ABC transporter permease PotB 635960 potB 5399180 potB Clostridium botulinum A str. Hall spermidine/putrescine ABC transporter permease PotB YP_001386500.1 635001 D 441771 CDS YP_001386501.1 153936910 5400267 635963..637804 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM PF01547; spermidine/putrescine ABC transporter permease/spermidine/putrescine-binding protein 637804 5400267 CLC_0620 Clostridium botulinum A str. Hall spermidine/putrescine ABC transporter permease/spermidine/putrescine-binding protein YP_001386501.1 635963 D 441771 CDS YP_001386502.1 153937866 5399513 complement(638161..639030) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 639030 5399513 CLC_0621 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386502.1 638161 R 441771 CDS YP_001386503.1 153934521 5400096 639292..640593 1 NC_009698.1 identified by match to protein family HMM PF00375; proton/sodium-glutamate symport protein 640593 5400096 CLC_0622 Clostridium botulinum A str. Hall proton/sodium-glutamate symport protein YP_001386503.1 639292 D 441771 CDS YP_001386504.1 153936878 5398834 641195..641335 1 NC_009698.1 identified by Glimmer3; hypothetical protein 641335 5398834 CLC_0623 Clostridium botulinum A str. Hall hypothetical protein YP_001386504.1 641195 D 441771 CDS YP_001386505.1 153936449 5400630 641739..642383 1 NC_009698.1 identified by match to protein family HMM PF01966; HD domain-containing protein 642383 5400630 CLC_0624 Clostridium botulinum A str. Hall HD domain-containing protein YP_001386505.1 641739 D 441771 CDS YP_001386507.1 153935879 5400601 642848..643078 1 NC_009698.1 identified by Glimmer3; hypothetical protein 643078 5400601 CLC_0626 Clostridium botulinum A str. Hall hypothetical protein YP_001386507.1 642848 D 441771 CDS YP_001386508.1 153936415 5399478 643082..644086 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 644086 5399478 CLC_0627 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386508.1 643082 D 441771 CDS YP_001386509.1 153937816 5400810 complement(644400..645248) 1 NC_009698.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 645248 5400810 CLC_0628 Clostridium botulinum A str. Hall pentapeptide repeat-containing protein YP_001386509.1 644400 R 441771 CDS YP_003204969.1 258676992 5399030 645687..646037 1 NC_009698.1 tRNA-binding domain protein 646037 5399030 CLC_0629 Clostridium botulinum A str. Hall tRNA-binding domain protein YP_003204969.1 645687 D 441771 CDS YP_001386510.1 153934577 5401751 646211..646819 1 NC_009698.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 646819 lepB-1 5401751 lepB-1 Clostridium botulinum A str. Hall signal peptidase I YP_001386510.1 646211 D 441771 CDS YP_001386512.1 153937226 5401780 647648..648349 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 648349 5401780 CLC_0632 Clostridium botulinum A str. Hall LytTr family DNA-binding response regulator YP_001386512.1 647648 D 441771 CDS YP_001386513.1 153934759 5398789 648963..649082 1 NC_009698.1 identified by Glimmer3; hypothetical protein 649082 5398789 CLC_0633 Clostridium botulinum A str. Hall hypothetical protein YP_001386513.1 648963 D 441771 CDS YP_001386514.1 153935731 5401441 649122..649247 1 NC_009698.1 identified by Glimmer3; hypothetical protein 649247 5401441 CLC_0634 Clostridium botulinum A str. Hall hypothetical protein YP_001386514.1 649122 D 441771 CDS YP_001386515.1 153936644 5399363 649941..650087 1 NC_009698.1 identified by Glimmer3; hypothetical protein 650087 5399363 CLC_0635 Clostridium botulinum A str. Hall hypothetical protein YP_001386515.1 649941 D 441771 CDS YP_001386516.1 153935053 5401424 650694..652046 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 652046 5401424 CLC_0636 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001386516.1 650694 D 441771 CDS YP_001386517.1 153935881 5398626 652039..652629 1 NC_009698.1 identified by Glimmer3; hypothetical protein 652629 5398626 CLC_0637 Clostridium botulinum A str. Hall hypothetical protein YP_001386517.1 652039 D 441771 CDS YP_001386518.1 153936880 5400158 652666..653163 1 NC_009698.1 hypothetical protein 653163 5400158 CLC_0638 Clostridium botulinum A str. Hall hypothetical protein YP_001386518.1 652666 D 441771 CDS YP_001386519.1 153937039 5400812 653198..654910 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; ABC transporter ATP-binding protein/permease 654910 5400812 CLC_0639 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001386519.1 653198 D 441771 CDS YP_001386520.1 153935819 5399389 655020..655769 1 NC_009698.1 lipoprotein 655769 5399389 CLC_0640 Clostridium botulinum A str. Hall lipoprotein YP_001386520.1 655020 D 441771 CDS YP_001386521.1 153935044 5399891 655792..656271 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 656271 5399891 CLC_0641 Clostridium botulinum A str. Hall acetyltransferase YP_001386521.1 655792 D 441771 CDS YP_001386522.1 153935638 5398817 656268..658736 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 658736 5398817 CLC_0642 Clostridium botulinum A str. Hall ABC transporter permease YP_001386522.1 656268 D 441771 CDS YP_001386523.1 153934488 5399288 658751..659431 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 659431 5399288 CLC_0643 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386523.1 658751 D 441771 CDS YP_001386524.1 153937799 5399882 660000..660263 1 NC_009698.1 hypothetical protein 660263 5399882 CLC_0644 Clostridium botulinum A str. Hall hypothetical protein YP_001386524.1 660000 D 441771 CDS YP_001386525.1 153936915 5399074 660592..661458 1 NC_009698.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 661458 5399074 CLC_0645 Clostridium botulinum A str. Hall degV family protein YP_001386525.1 660592 D 441771 CDS YP_001386526.1 153936979 5398275 661855..662367 1 NC_009698.1 hypothetical protein 662367 5398275 CLC_0646 Clostridium botulinum A str. Hall hypothetical protein YP_001386526.1 661855 D 441771 CDS YP_001386528.1 153934999 5401166 662863..664773 1 NC_009698.1 identified by match to protein family HMM PF00884; sulfatase 664773 5401166 CLC_0648 Clostridium botulinum A str. Hall sulfatase YP_001386528.1 662863 D 441771 CDS YP_001386529.1 153936717 5401376 complement(664909..666321) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator 666321 5401376 CLC_0649 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001386529.1 664909 R 441771 CDS YP_001386530.1 153936397 5399842 complement(666656..667879) 1 NC_009698.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804; NupC family nucleoside transporter 667879 5399842 CLC_0650 Clostridium botulinum A str. Hall NupC family nucleoside transporter YP_001386530.1 666656 R 441771 CDS YP_001386531.1 153935177 5399371 669052..670443 1 NC_009698.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 670443 asnC 5399371 asnC Clostridium botulinum A str. Hall asparaginyl-tRNA synthetase YP_001386531.1 669052 D 441771 CDS YP_001386532.1 153937059 5398700 670737..671057 1 NC_009698.1 identified by similarity to GB:BAD62756.1; match to protein family HMM PF03551; PadR family transcriptional regulator 671057 5398700 CLC_0652 Clostridium botulinum A str. Hall PadR family transcriptional regulator YP_001386532.1 670737 D 441771 CDS YP_001386533.1 153936392 5399540 671073..671609 1 NC_009698.1 hypothetical protein 671609 5399540 CLC_0653 Clostridium botulinum A str. Hall hypothetical protein YP_001386533.1 671073 D 441771 CDS YP_001386534.1 153935905 5398575 671812..672267 1 NC_009698.1 identified by match to protein family HMM PF04397; LytR family transcriptional regulator 672267 5398575 CLC_0654 Clostridium botulinum A str. Hall LytR family transcriptional regulator YP_001386534.1 671812 D 441771 CDS YP_001386535.1 153934819 5399690 672269..672967 1 NC_009698.1 hypothetical protein 672967 5399690 CLC_0655 Clostridium botulinum A str. Hall hypothetical protein YP_001386535.1 672269 D 441771 CDS YP_001386536.1 153935160 5398374 673569..674456 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 674456 5398374 CLC_0656 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386536.1 673569 D 441771 CDS YP_001386537.1 153937863 5399888 674885..675796 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 675796 5399888 CLC_0657 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386537.1 674885 D 441771 CDS YP_001386538.1 153937449 5398993 675809..676201 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 676201 5398993 CLC_0658 Clostridium botulinum A str. Hall DNA-binding protein YP_001386538.1 675809 D 441771 CDS YP_001386539.1 153936528 5400763 676664..677803 1 NC_009698.1 lipoprotein 677803 5400763 CLC_0659 Clostridium botulinum A str. Hall lipoprotein YP_001386539.1 676664 D 441771 CDS YP_001386540.1 153935317 5401408 678000..679106 1 NC_009698.1 lipoprotein 679106 5401408 CLC_0660 Clostridium botulinum A str. Hall lipoprotein YP_001386540.1 678000 D 441771 CDS YP_001386541.1 153934579 5400179 679281..679964 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 679964 5400179 CLC_0661 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386541.1 679281 D 441771 CDS YP_001386544.1 153934731 5398629 681595..682311 1 NC_009698.1 identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 682311 5398629 CLC_0664 Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001386544.1 681595 D 441771 CDS YP_001386545.1 153935657 5401341 682332..683024 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 683024 5401341 CLC_0665 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386545.1 682332 D 441771 CDS YP_001386546.1 153934812 5400093 683014..684135 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 684135 5400093 CLC_0666 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386546.1 683014 D 441771 CDS YP_001386547.1 153935603 5401800 complement(684295..685434) 1 NC_009698.1 hypothetical protein 685434 5401800 CLC_0667 Clostridium botulinum A str. Hall hypothetical protein YP_001386547.1 684295 R 441771 CDS YP_001386548.1 153936316 5400847 complement(685577..686389) 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 686389 5400847 CLC_0668 Clostridium botulinum A str. Hall response regulator YP_001386548.1 685577 R 441771 CDS YP_001386549.1 153934847 5399229 complement(686386..687684) 1 NC_009698.1 identified by match to protein family HMM PF02518; sensor histidine kinase 687684 5399229 CLC_0669 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386549.1 686386 R 441771 CDS YP_001386550.1 153936715 5399494 688079..689239 1 NC_009698.1 identified by match to protein family HMM PF01098; rod shape-determining protein RodA 689239 rodA-1 5399494 rodA-1 Clostridium botulinum A str. Hall rod shape-determining protein RodA YP_001386550.1 688079 D 441771 CDS YP_001386551.1 153937500 5399160 complement(689548..690726) 1 NC_009698.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; cyclopropane-fatty-acyl-phospholipid synthase 690726 cfa 5399160 cfa Clostridium botulinum A str. Hall cyclopropane-fatty-acyl-phospholipid synthase YP_001386551.1 689548 R 441771 CDS YP_001386552.1 153934806 5399369 691054..692085 1 NC_009698.1 identified by Glimmer3; hypothetical protein 692085 5399369 CLC_0672 Clostridium botulinum A str. Hall hypothetical protein YP_001386552.1 691054 D 441771 CDS YP_001386553.1 153935527 5400409 692255..693934 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 693934 5400409 CLC_0673 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001386553.1 692255 D 441771 CDS YP_001386554.1 153937824 5399058 complement(694357..694983) 1 NC_009698.1 identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase 694983 cat-1 5399058 cat-1 Clostridium botulinum A str. Hall chloramphenicol acetyltransferase YP_001386554.1 694357 R 441771 CDS YP_001386555.1 153937435 5401470 695148..695765 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 695765 5401470 CLC_0675 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001386555.1 695148 D 441771 CDS YP_001386556.1 153937654 5399796 695868..696338 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 696338 5399796 CLC_0676 Clostridium botulinum A str. Hall acetyltransferase YP_001386556.1 695868 D 441771 CDS YP_001386557.1 153935194 5399639 complement(696405..696734) 1 NC_009698.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222; csaA protein 696734 csaA 5399639 csaA Clostridium botulinum A str. Hall csaA protein YP_001386557.1 696405 R 441771 CDS YP_001386558.1 153936164 5401666 complement(696942..697667) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 697667 5401666 CLC_0678 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386558.1 696942 R 441771 CDS YP_001386559.1 153935310 5398291 complement(697964..698515) 1 NC_009698.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; helix-turn-helix domain-containing protein 698515 5398291 CLC_0679 Clostridium botulinum A str. Hall helix-turn-helix domain-containing protein YP_001386559.1 697964 R 441771 CDS YP_001386560.1 153934770 5401247 698772..699362 1 NC_009698.1 identified by match to protein family HMM TIGR00277; HDIG domain-containing protein 699362 5401247 CLC_0680 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001386560.1 698772 D 441771 CDS YP_001386561.1 153936646 5400252 699490..700506 1 NC_009698.1 identified by match to protein family HMM PF04397; LytR family transcriptional regulator 700506 5400252 CLC_0681 Clostridium botulinum A str. Hall LytR family transcriptional regulator YP_001386561.1 699490 D 441771 CDS YP_001386562.1 153936244 5401303 700889..701605 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 701605 5401303 CLC_0682 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386562.1 700889 D 441771 CDS YP_001386563.1 153935730 5398628 701611..701745 1 NC_009698.1 identified by Glimmer3; hypothetical protein 701745 5398628 CLC_0683 Clostridium botulinum A str. Hall hypothetical protein YP_001386563.1 701611 D 441771 CDS YP_001386564.1 153934689 5398280 complement(701823..703046) 1 NC_009698.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 703046 5398280 CLC_0684 Clostridium botulinum A str. Hall allantoate amidohydrolase YP_001386564.1 701823 R 441771 CDS YP_001386565.1 153937741 5401423 703879..705774 1 NC_009698.1 identified by match to protein family HMM PF00488; MutS domain-containing protein 705774 5401423 CLC_0685 Clostridium botulinum A str. Hall MutS domain-containing protein YP_001386565.1 703879 D 441771 CDS YP_001386566.1 153936885 5399436 705882..706313 1 NC_009698.1 identified by Glimmer3; hypothetical protein 706313 5399436 CLC_0686 Clostridium botulinum A str. Hall hypothetical protein YP_001386566.1 705882 D 441771 CDS YP_003204970.1 258676993 5399303 706371..706721 1 NC_009698.1 hypothetical protein 706721 5399303 CLC_0687 Clostridium botulinum A str. Hall hypothetical protein YP_003204970.1 706371 D 441771 CDS YP_001386567.1 153935908 5399394 complement(706808..707281) 1 NC_009698.1 identified by match to protein family HMM PF01243; nimA protein 707281 5399394 CLC_0688 Clostridium botulinum A str. Hall nimA protein YP_001386567.1 706808 R 441771 CDS YP_001386568.1 153934935 5400091 complement(707304..707717) 1 NC_009698.1 identified by match to protein family HMM PF04304; hypothetical protein 707717 5400091 CLC_0689 Clostridium botulinum A str. Hall hypothetical protein YP_001386568.1 707304 R 441771 CDS YP_001386569.1 153935841 5399350 708342..708821 1 NC_009698.1 identified by match to protein family HMM PF01243; pyridoxamine 5'-phosphate oxidase 708821 5399350 CLC_0690 Clostridium botulinum A str. Hall pyridoxamine 5'-phosphate oxidase YP_001386569.1 708342 D 441771 CDS YP_001386570.1 153936294 5400759 complement(709045..709356) 1 NC_009698.1 hypothetical protein 709356 5400759 CLC_0691 Clostridium botulinum A str. Hall hypothetical protein YP_001386570.1 709045 R 441771 CDS YP_001386571.1 153935664 5400789 complement(709495..710904) 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 710904 5400789 CLC_0692 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001386571.1 709495 R 441771 CDS YP_001386572.1 153935624 5399703 711097..711405 1 NC_009698.1 hypothetical protein 711405 5399703 CLC_0693 Clostridium botulinum A str. Hall hypothetical protein YP_001386572.1 711097 D 441771 CDS YP_001386573.1 153934706 5399589 711523..711720 1 NC_009698.1 hypothetical protein 711720 5399589 CLC_0694 Clostridium botulinum A str. Hall hypothetical protein YP_001386573.1 711523 D 441771 CDS YP_001386574.1 153937665 5401785 711979..713256 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE 713256 rhlE 5401785 rhlE Clostridium botulinum A str. Hall ATP-dependent RNA helicase RhlE YP_001386574.1 711979 D 441771 CDS YP_001386575.1 153936593 5401620 713832..714320 1 NC_009698.1 identified by match to protein family HMM PF02915; rubrerythrin 714320 5401620 CLC_0696 Clostridium botulinum A str. Hall rubrerythrin YP_001386575.1 713832 D 441771 CDS YP_001386576.1 153935992 5401660 714492..714929 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 714929 5401660 CLC_0697 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001386576.1 714492 D 441771 CDS YP_001386577.1 153936740 5400773 714957..716390 1 NC_009698.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 716390 5400773 CLC_0698 Clostridium botulinum A str. Hall EmrB/QacA family drug resistance transporter YP_001386577.1 714957 D 441771 CDS YP_001386578.1 153937840 5399045 complement(716512..717702) 1 NC_009698.1 hypothetical protein 717702 5399045 CLC_0699 Clostridium botulinum A str. Hall hypothetical protein YP_001386578.1 716512 R 441771 CDS YP_001386579.1 153935300 5400914 717827..718702 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 718702 5400914 CLC_0700 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001386579.1 717827 D 441771 CDS YP_001386580.1 153935551 5399225 718829..720523 1 NC_009698.1 identified by match to protein family HMM PF08011; hypothetical protein 720523 5399225 CLC_0701 Clostridium botulinum A str. Hall hypothetical protein YP_001386580.1 718829 D 441771 CDS YP_001386581.1 153937019 5399188 720707..720928 1 NC_009698.1 identified by Glimmer3; hypothetical protein 720928 5399188 CLC_0702 Clostridium botulinum A str. Hall hypothetical protein YP_001386581.1 720707 D 441771 CDS YP_001386582.1 153935890 5401160 720918..721235 1 NC_009698.1 identified by similarity to GB:CAJ62824.1; hypothetical protein 721235 5401160 CLC_0703 Clostridium botulinum A str. Hall hypothetical protein YP_001386582.1 720918 D 441771 CDS YP_001386583.1 153934960 5400117 721302..721970 1 NC_009698.1 identified by match to protein family HMM PF02698; sanA protein 721970 5400117 CLC_0704 Clostridium botulinum A str. Hall sanA protein YP_001386583.1 721302 D 441771 CDS YP_001386584.1 153934536 5399085 722101..725067 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; restriction/helicase domain-containing protein 725067 5399085 CLC_0705 Clostridium botulinum A str. Hall restriction/helicase domain-containing protein YP_001386584.1 722101 D 441771 CDS YP_001386585.1 153937438 5398371 complement(725107..725505) 1 NC_009698.1 identified by match to protein family HMM PF00293; mutator mutT protein 725505 5398371 CLC_0706 Clostridium botulinum A str. Hall mutator mutT protein YP_001386585.1 725107 R 441771 CDS YP_001386586.1 153936867 5398320 725969..726808 1 NC_009698.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator 726808 5398320 CLC_0707 Clostridium botulinum A str. Hall BglG family transcriptional antiterminator YP_001386586.1 725969 D 441771 CDS YP_001386587.1 153935429 5399642 727013..728854 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 728854 5399642 CLC_0708 Clostridium botulinum A str. Hall PTS system beta-glucoside-specific transporter subunit IIABC YP_001386587.1 727013 D 441771 CDS YP_001386588.1 153934904 5398681 728866..729684 1 NC_009698.1 identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 729684 5398681 CLC_0709 Clostridium botulinum A str. Hall phosphotransferase domain-containing protein YP_001386588.1 728866 D 441771 CDS YP_001386589.1 153937793 5400020 730311..731021 1 NC_009698.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 731021 5400020 CLC_0710 Clostridium botulinum A str. Hall Crp/FNR family transcriptional regulator YP_001386589.1 730311 D 441771 CDS YP_001386590.1 153937456 5400264 731180..732412 1 NC_009698.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase 732412 5400264 CLC_0711 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386590.1 731180 D 441771 CDS YP_001386591.1 153934980 5401288 732472..733170 1 NC_009698.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405; scdA protein 733170 5401288 CLC_0712 Clostridium botulinum A str. Hall scdA protein YP_001386591.1 732472 D 441771 CDS YP_001386592.1 153937277 5398440 733196..733951 1 NC_009698.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282; hypothetical protein 733951 5398440 CLC_0713 Clostridium botulinum A str. Hall hypothetical protein YP_001386592.1 733196 D 441771 CDS YP_001386593.1 153935228 5399564 complement(734024..734443) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 734443 5399564 CLC_0714 Clostridium botulinum A str. Hall hypothetical protein YP_001386593.1 734024 R 441771 CDS YP_001386594.1 153935957 5401496 735110..736294 1 NC_009698.1 identified by match to protein family HMM PF03616; match to protein family HMM TIGR00210; sodium/glutamate symporter 736294 gltS 5401496 gltS Clostridium botulinum A str. Hall sodium/glutamate symporter YP_001386594.1 735110 D 441771 CDS YP_001386595.1 153936769 5398580 complement(736381..736497) 1 NC_009698.1 hypothetical protein 736497 5398580 CLC_0716 Clostridium botulinum A str. Hall hypothetical protein YP_001386595.1 736381 R 441771 CDS YP_001386596.1 153936774 5399033 736903..737370 1 NC_009698.1 hypothetical protein 737370 5399033 CLC_0717 Clostridium botulinum A str. Hall hypothetical protein YP_001386596.1 736903 D 441771 CDS YP_001386597.1 153937510 5400004 737377..738720 1 NC_009698.1 hypothetical protein 738720 5400004 CLC_0718 Clostridium botulinum A str. Hall hypothetical protein YP_001386597.1 737377 D 441771 CDS YP_001386598.1 153935733 5399915 complement(738873..739019) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 739019 5399915 CLC_0719 Clostridium botulinum A str. Hall hypothetical protein YP_001386598.1 738873 R 441771 CDS YP_001386599.1 153936335 5400332 complement(738970..739173) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 739173 5400332 CLC_0720 Clostridium botulinum A str. Hall hypothetical protein YP_001386599.1 738970 R 441771 CDS YP_001386600.1 153935248 5401426 739627..740613 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 740613 5401426 CLC_0721 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386600.1 739627 D 441771 CDS YP_001386601.1 153937758 5401745 740955..741848 1 NC_009698.1 identified by match to protein family HMM PF02653; ABC transporter permease 741848 5401745 CLC_0722 Clostridium botulinum A str. Hall ABC transporter permease YP_001386601.1 740955 D 441771 CDS YP_001386602.1 153934976 5399686 741811..742566 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 742566 5399686 CLC_0723 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386602.1 741811 D 441771 CDS YP_001386603.1 153935930 5401597 742597..743556 1 NC_009698.1 identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 743556 5401597 CLC_0724 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001386603.1 742597 D 441771 CDS YP_001386604.1 153935927 5400617 743570..743950 1 NC_009698.1 identified by Glimmer3; hypothetical protein 743950 5400617 CLC_0725 Clostridium botulinum A str. Hall hypothetical protein YP_001386604.1 743570 D 441771 CDS YP_001386605.1 153937350 5398332 744670..745353 1 NC_009698.1 hypothetical protein 745353 5398332 CLC_0726 Clostridium botulinum A str. Hall hypothetical protein YP_001386605.1 744670 D 441771 CDS YP_001386606.1 153934798 5398329 complement(745644..747065) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 747065 5398329 CLC_0727 Clostridium botulinum A str. Hall hypothetical protein YP_001386606.1 745644 R 441771 CDS YP_001386607.1 153935347 5399447 complement(747062..747625) 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 747625 5399447 CLC_0728 Clostridium botulinum A str. Hall RNA polymerase factor sigma-70 YP_001386607.1 747062 R 441771 CDS YP_001386608.1 153935524 5400568 747854..748813 1 NC_009698.1 identified by match to protein family HMM PF01207; dihydrouridine synthase 748813 5400568 CLC_0729 Clostridium botulinum A str. Hall dihydrouridine synthase YP_001386608.1 747854 D 441771 CDS YP_001386609.1 153936284 5400795 748949..749413 1 NC_009698.1 identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 749413 greA-1 5400795 greA-1 Clostridium botulinum A str. Hall transcription elongation factor GreA YP_001386609.1 748949 D 441771 CDS YP_001386610.1 153937827 5398919 749574..750326 1 NC_009698.1 hypothetical protein 750326 5398919 CLC_0731 Clostridium botulinum A str. Hall hypothetical protein YP_001386610.1 749574 D 441771 CDS YP_001386611.1 153936955 5401103 750601..752058 1 NC_009698.1 identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit 752058 5401103 CLC_0732 Clostridium botulinum A str. Hall type I restriction-modification system, M subunit YP_001386611.1 750601 D 441771 CDS YP_001386612.1 153934972 5399799 752153..753313 1 NC_009698.1 identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 753313 5399799 CLC_0733 Clostridium botulinum A str. Hall type I restriction-modification system subunit S YP_001386612.1 752153 D 441771 CDS YP_001386613.1 153936591 5400208 753401..753586 1 NC_009698.1 identified by Glimmer3; hypothetical protein 753586 5400208 CLC_0734 Clostridium botulinum A str. Hall hypothetical protein YP_001386613.1 753401 D 441771 CDS YP_001386614.1 153936883 5400014 753805..754011 1 NC_009698.1 identified by similarity to GB:ABC20367.1; hypothetical protein 754011 5400014 CLC_0735 Clostridium botulinum A str. Hall hypothetical protein YP_001386614.1 753805 D 441771 CDS YP_001386615.1 153937631 5400771 754155..757502 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit 757502 5400771 CLC_0736 Clostridium botulinum A str. Hall type I restriction-modification system, R subunit YP_001386615.1 754155 D 441771 CDS YP_001386616.1 153934674 5399392 757560..760214 1 NC_009698.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 760214 5399392 CLC_0737 Clostridium botulinum A str. Hall ATP-dependent DNA helicase PcrA YP_001386616.1 757560 D 441771 CDS YP_001386617.1 153936090 5399013 complement(760379..760495) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 760495 5399013 CLC_0738 Clostridium botulinum A str. Hall hypothetical protein YP_001386617.1 760379 R 441771 CDS YP_001386618.1 153936446 5398602 760782..761603 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 761603 5398602 CLC_0739 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386618.1 760782 D 441771 CDS YP_001386619.1 153937308 5399207 762073..763062 1 NC_009698.1 identified by match to protein family HMM PF01497; ferrichrome ABC transporter ferrichrome-binding protein 763062 5399207 CLC_0740 Clostridium botulinum A str. Hall ferrichrome ABC transporter ferrichrome-binding protein YP_001386619.1 762073 D 441771 CDS YP_001386620.1 153936499 5398782 763158..764198 1 NC_009698.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuB 764198 fhuB 5398782 fhuB Clostridium botulinum A str. Hall ferrichrome ABC transporter permease FhuB YP_001386620.1 763158 D 441771 CDS YP_001386621.1 153937093 5399243 764198..765238 1 NC_009698.1 identified by match to protein family HMM PF01032; ferrichrome ABC transporter permease FhuG 765238 fhuG 5399243 fhuG Clostridium botulinum A str. Hall ferrichrome ABC transporter permease FhuG YP_001386621.1 764198 D 441771 CDS YP_001386622.1 153935946 5399041 765466..766251 1 NC_009698.1 identified by match to protein family HMM PF00005; ferrichrome ABC transporter ATP-binding protein 766251 fhuC 5399041 fhuC Clostridium botulinum A str. Hall ferrichrome ABC transporter ATP-binding protein YP_001386622.1 765466 D 441771 CDS YP_001386623.1 153936899 5400149 766281..767030 1 NC_009698.1 identified by match to protein family HMM PF00142; nitrogenase iron protein 767030 nifH 5400149 nifH Clostridium botulinum A str. Hall nitrogenase iron protein YP_001386623.1 766281 D 441771 CDS YP_001386624.1 153936696 5399928 767033..768301 1 NC_009698.1 identified by Glimmer3; hypothetical protein 768301 5399928 CLC_0745 Clostridium botulinum A str. Hall hypothetical protein YP_001386624.1 767033 D 441771 CDS YP_001386625.1 153937640 5400473 768341..769579 1 NC_009698.1 identified by Glimmer3; hypothetical protein 769579 5400473 CLC_0746 Clostridium botulinum A str. Hall hypothetical protein YP_001386625.1 768341 D 441771 CDS YP_001386626.1 153934557 5400442 769902..771914 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 771914 5400442 CLC_0747 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386626.1 769902 D 441771 CDS YP_001386627.1 153935749 5401635 772011..772130 1 NC_009698.1 identified by Glimmer3; hypothetical protein 772130 5401635 CLC_0748 Clostridium botulinum A str. Hall hypothetical protein YP_001386627.1 772011 D 441771 CDS YP_001386628.1 153935111 5399386 complement(772210..773619) 1 NC_009698.1 hypothetical protein 773619 5399386 CLC_0749 Clostridium botulinum A str. Hall hypothetical protein YP_001386628.1 772210 R 441771 CDS YP_001386629.1 153934598 5398597 774198..775310 1 NC_009698.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 775310 gcvT 5398597 gcvT Clostridium botulinum A str. Hall glycine cleavage system aminomethyltransferase T YP_001386629.1 774198 D 441771 CDS YP_001386630.1 153936781 5400747 775435..775827 1 NC_009698.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 775827 gcvH 5400747 gcvH Clostridium botulinum A str. Hall glycine cleavage system protein H YP_001386630.1 775435 D 441771 CDS YP_001386631.1 153934481 5399606 775830..777170 1 NC_009698.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 777170 gcvPA 5399606 gcvPA Clostridium botulinum A str. Hall glycine dehydrogenase subunit 1 YP_001386631.1 775830 D 441771 CDS YP_001386632.1 153937289 5401122 777170..778624 1 NC_009698.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 778624 gcvPB 5401122 gcvPB Clostridium botulinum A str. Hall glycine dehydrogenase subunit 2 YP_001386632.1 777170 D 441771 CDS YP_001386633.1 153934617 5401605 778818..780206 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; glycine cleavage system, dihydrolipoamide dehydrogenase 780206 5401605 CLC_0754 Clostridium botulinum A str. Hall glycine cleavage system, dihydrolipoamide dehydrogenase YP_001386633.1 778818 D 441771 CDS YP_001386634.1 153935281 5399758 780224..781201 1 NC_009698.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 781201 5399758 CLC_0755 Clostridium botulinum A str. Hall lipoate-protein ligase A YP_001386634.1 780224 D 441771 CDS YP_001386635.1 153936105 5398841 781611..783704 1 NC_009698.1 identified by Glimmer3; hypothetical protein 783704 5398841 CLC_0756 Clostridium botulinum A str. Hall hypothetical protein YP_001386635.1 781611 D 441771 CDS YP_001386636.1 153936808 5398458 784066..784902 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 784902 5398458 CLC_0757 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386636.1 784066 D 441771 CDS YP_001386637.1 153937541 5400384 784996..785544 1 NC_009698.1 identified by Glimmer3; hypothetical protein 785544 5400384 CLC_0758 Clostridium botulinum A str. Hall hypothetical protein YP_001386637.1 784996 D 441771 CDS YP_001386638.1 153934871 5400494 785746..785910 1 NC_009698.1 hypothetical protein 785910 5400494 CLC_0759 Clostridium botulinum A str. Hall hypothetical protein YP_001386638.1 785746 D 441771 CDS YP_001386639.1 153935568 5401818 786620..787384 1 NC_009698.1 hypothetical protein 787384 5401818 CLC_0760 Clostridium botulinum A str. Hall hypothetical protein YP_001386639.1 786620 D 441771 CDS YP_001386640.1 153934811 5399099 787438..787896 1 NC_009698.1 hypothetical protein 787896 5399099 CLC_0761 Clostridium botulinum A str. Hall hypothetical protein YP_001386640.1 787438 D 441771 CDS YP_001386641.1 153935956 5399678 788222..788986 1 NC_009698.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 788986 5399678 CLC_0762 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001386641.1 788222 D 441771 CDS YP_001386642.1 153935320 5400465 789038..789769 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 789769 5400465 CLC_0763 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386642.1 789038 D 441771 CDS YP_001386643.1 153937129 5399517 789756..790499 1 NC_009698.1 identified by match to protein family HMM PF01061; drug resistance ABC-2 type transporter permease 790499 5399517 CLC_0764 Clostridium botulinum A str. Hall drug resistance ABC-2 type transporter permease YP_001386643.1 789756 D 441771 CDS YP_001386644.1 153936378 5401011 790707..792944 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 792944 5401011 CLC_0765 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001386644.1 790707 D 441771 CDS YP_001386645.1 153935697 5399906 793138..795396 1 NC_009698.1 helicase 795396 5399906 CLC_0766 Clostridium botulinum A str. Hall helicase YP_001386645.1 793138 D 441771 CDS YP_001386646.1 153937582 5398389 complement(795666..796373) 1 NC_009698.1 identified by match to protein family HMM PF07505; hypothetical protein 796373 5398389 CLC_0767 Clostridium botulinum A str. Hall hypothetical protein YP_001386646.1 795666 R 441771 CDS YP_001386647.1 153936741 5401203 complement(796456..797310) 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 797310 5401203 CLC_0768 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386647.1 796456 R 441771 CDS YP_001386648.1 153937499 5398937 complement(797802..798683) 1 NC_009698.1 identified by match to protein family HMM PF00892; cysteine transporter 798683 5398937 CLC_0769 Clostridium botulinum A str. Hall cysteine transporter YP_001386648.1 797802 R 441771 CDS YP_001386650.1 153936749 5398747 799739..799999 1 NC_009698.1 identified by match to protein family HMM PF04994; tfoX domain-containing protein 799999 5398747 CLC_0771 Clostridium botulinum A str. Hall tfoX domain-containing protein YP_001386650.1 799739 D 441771 CDS YP_001386651.1 153936162 5400484 800025..800519 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 800519 5400484 CLC_0772 Clostridium botulinum A str. Hall acetyltransferase YP_001386651.1 800025 D 441771 CDS YP_001386652.1 153936805 5398492 complement(800698..801696) 1 NC_009698.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; 3-oxoacyl-ACP synthase 801696 5398492 CLC_0773 Clostridium botulinum A str. Hall 3-oxoacyl-ACP synthase YP_001386652.1 800698 R 441771 CDS YP_001386653.1 153934771 5401245 801945..803411 1 NC_009698.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 803411 5401245 CLC_0774 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001386653.1 801945 D 441771 CDS YP_001386654.1 153937395 5398824 803904..804194 1 NC_009698.1 hypothetical protein 804194 5398824 CLC_0775 Clostridium botulinum A str. Hall hypothetical protein YP_001386654.1 803904 D 441771 CDS YP_001386656.1 153935432 5399987 804393..805946 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 805946 5399987 CLC_0777 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386656.1 804393 D 441771 CDS YP_001386658.1 153937814 5401357 806248..806874 1 NC_009698.1 identified by match to protein family HMM PF01965; DJ-1/PfpI family protein 806874 5401357 CLC_0779 Clostridium botulinum A str. Hall DJ-1/PfpI family protein YP_001386658.1 806248 D 441771 CDS YP_001386659.1 153936773 5400748 complement(807101..808009) 1 NC_009698.1 identified by match to protein family HMM PF00291; cysteine synthase 808009 5400748 CLC_0780 Clostridium botulinum A str. Hall cysteine synthase YP_001386659.1 807101 R 441771 CDS YP_001386660.1 153937492 5401749 complement(807993..808445) 1 NC_009698.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 808445 luxS 5401749 luxS Clostridium botulinum A str. Hall S-ribosylhomocysteinase YP_001386660.1 807993 R 441771 CDS YP_001386661.1 153936708 5399914 complement(808447..809589) 1 NC_009698.1 identified by match to protein family HMM PF01053; match to protein family HMM PF01212; cystathionine beta-lyase 809589 metC 5399914 metC Clostridium botulinum A str. Hall cystathionine beta-lyase YP_001386661.1 808447 R 441771 CDS YP_001386662.1 153936062 5399874 complement(809690..810316) 1 NC_009698.1 identified by match to protein family HMM PF01209; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 810316 5399874 CLC_0783 Clostridium botulinum A str. Hall hypothetical protein YP_001386662.1 809690 R 441771 CDS YP_001386664.1 153937431 5398639 811226..813079 1 NC_009698.1 identified by similarity to GB:BAA34922.1; match to protein family HMM PF00704; chitinase 813079 5398639 CLC_0785 Clostridium botulinum A str. Hall chitinase YP_001386664.1 811226 D 441771 CDS YP_001386665.1 153936477 5398474 813445..813684 1 NC_009698.1 identified by match to protein family HMM PF00403; heavy metal binding protein 813684 5398474 CLC_0786 Clostridium botulinum A str. Hall heavy metal binding protein YP_001386665.1 813445 D 441771 CDS YP_001386666.1 153935480 5398385 complement(813798..814130) 1 NC_009698.1 hypothetical protein 814130 5398385 CLC_0787 Clostridium botulinum A str. Hall hypothetical protein YP_001386666.1 813798 R 441771 CDS YP_001386667.1 153934571 5401366 complement(814218..814718) 1 NC_009698.1 identified by match to protein family HMM PF06172; hypothetical protein 814718 5401366 CLC_0788 Clostridium botulinum A str. Hall hypothetical protein YP_001386667.1 814218 R 441771 CDS YP_001386668.1 153935386 5400394 complement(815252..815860) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 815860 5400394 CLC_0789 Clostridium botulinum A str. Hall hypothetical protein YP_001386668.1 815252 R 441771 CDS YP_001386669.1 153934660 5401507 complement(815953..816375) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 816375 5401507 CLC_0790 Clostridium botulinum A str. Hall DNA-binding protein YP_001386669.1 815953 R 441771 CDS YP_001386671.1 153937810 5400230 816821..818080 1 NC_009698.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; dnaD protein 818080 5400230 CLC_0792 Clostridium botulinum A str. Hall dnaD protein YP_001386671.1 816821 D 441771 CDS YP_001386672.1 153937466 5398994 818099..818638 1 NC_009698.1 identified by match to protein family HMM TIGR02937; sigma-70 family RNA polymerase sigma factor 818638 5398994 CLC_0793 Clostridium botulinum A str. Hall sigma-70 family RNA polymerase sigma factor YP_001386672.1 818099 D 441771 CDS YP_001386673.1 153934805 5399553 818724..819080 1 NC_009698.1 identified by match to protein family HMM TIGR02436; hypothetical protein 819080 5399553 CLC_0794 Clostridium botulinum A str. Hall hypothetical protein YP_001386673.1 818724 D 441771 CDS YP_001386674.1 153934930 5399064 819221..819400 1 NC_009698.1 hypothetical protein 819400 5399064 CLC_0795 Clostridium botulinum A str. Hall hypothetical protein YP_001386674.1 819221 D 441771 CDS YP_001386675.1 153935882 5399057 819644..820474 1 NC_009698.1 identified by Glimmer3; hypothetical protein 820474 5399057 CLC_0796 Clostridium botulinum A str. Hall hypothetical protein YP_001386675.1 819644 D 441771 CDS YP_001386676.1 153936918 5398675 820712..820933 1 NC_009698.1 hypothetical protein 820933 5398675 CLC_0797 Clostridium botulinum A str. Hall hypothetical protein YP_001386676.1 820712 D 441771 CDS YP_001386677.1 153937575 5400813 820953..821180 1 NC_009698.1 hypothetical protein 821180 5400813 CLC_0798 Clostridium botulinum A str. Hall hypothetical protein YP_001386677.1 820953 D 441771 CDS YP_001386678.1 153934498 5398426 821329..822033 1 NC_009698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 822033 5398426 CLC_0799 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001386678.1 821329 D 441771 CDS YP_001386679.1 153936031 5399156 822745..823023 1 NC_009698.1 hypothetical protein 823023 5399156 CLC_0801 Clostridium botulinum A str. Hall hypothetical protein YP_001386679.1 822745 D 441771 CDS YP_001386680.1 153934647 5399063 823054..823287 1 NC_009698.1 bacteriocin 823287 5399063 CLC_0802 Clostridium botulinum A str. Hall bacteriocin YP_001386680.1 823054 D 441771 CDS YP_001386681.1 153937815 5399096 complement(824836..825177) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 825177 5399096 CLC_0805 Clostridium botulinum A str. Hall hypothetical protein YP_001386681.1 824836 R 441771 CDS YP_001386682.1 153935331 5400859 825718..826170 1 NC_009698.1 hypothetical protein 826170 5400859 CLC_0806 Clostridium botulinum A str. Hall hypothetical protein YP_001386682.1 825718 D 441771 CDS YP_001386683.1 153934622 5401750 complement(826469..827446) 1 NC_009698.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07485; LysM domain-containing protein 827446 5401750 CLC_0807 Clostridium botulinum A str. Hall LysM domain-containing protein YP_001386683.1 826469 R 441771 CDS YP_001386684.1 153935020 5400010 827711..828127 1 NC_009698.1 identified by similarity to SP:Q01257; match to protein family HMM PF01451; arsenate reductase 828127 5400010 CLC_0808 Clostridium botulinum A str. Hall arsenate reductase YP_001386684.1 827711 D 441771 CDS YP_001386685.1 153936462 5401759 complement(828463..828906) 1 NC_009698.1 identified by match to protein family HMM TIGR01909; hypothetical protein 828906 5401759 CLC_0809 Clostridium botulinum A str. Hall hypothetical protein YP_001386685.1 828463 R 441771 CDS YP_001386686.1 153937725 5399165 829354..829677 1 NC_009698.1 identified by match to protein family HMM PF01022; arsenical resistance operon repressor ArsR 829677 arsR 5399165 arsR Clostridium botulinum A str. Hall arsenical resistance operon repressor ArsR YP_001386686.1 829354 D 441771 CDS YP_001386687.1 153937017 5401179 829699..830070 1 NC_009698.1 identified by match to protein family HMM PF06953; arsenical resistence operon repressor ArsD 830070 arsD 5401179 arsD Clostridium botulinum A str. Hall arsenical resistence operon repressor ArsD YP_001386687.1 829699 D 441771 CDS YP_001386688.1 153935358 5401646 830089..831834 1 NC_009698.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345; arsenical pump-driving ATPase ArsA 831834 arsA 5401646 arsA Clostridium botulinum A str. Hall arsenical pump-driving ATPase ArsA YP_001386688.1 830089 D 441771 CDS YP_001386689.1 153934633 5400115 831933..833003 1 NC_009698.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenical-resistance protein 833003 arsB 5400115 arsB Clostridium botulinum A str. Hall arsenical-resistance protein YP_001386689.1 831933 D 441771 CDS YP_001386691.1 153934744 5399547 834397..834945 1 NC_009698.1 identified by match to protein family HMM PF00300; phosphoglycerate mutase 834945 5399547 CLC_0815 Clostridium botulinum A str. Hall phosphoglycerate mutase YP_001386691.1 834397 D 441771 CDS YP_001386692.1 153935405 5399026 835453..836031 1 NC_009698.1 identified by match to protein family HMM PF00440; transcriptional regulator 836031 5399026 CLC_0816 Clostridium botulinum A str. Hall transcriptional regulator YP_001386692.1 835453 D 441771 CDS YP_001386693.1 153937140 5401191 836041..836298 1 NC_009698.1 identified by Glimmer3; hypothetical protein 836298 5401191 CLC_0817 Clostridium botulinum A str. Hall hypothetical protein YP_001386693.1 836041 D 441771 CDS YP_001386694.1 153937192 5401397 836327..836515 1 NC_009698.1 hypothetical protein 836515 5401397 CLC_0818 Clostridium botulinum A str. Hall hypothetical protein YP_001386694.1 836327 D 441771 CDS YP_001386695.1 153937706 5400898 836770..836964 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 836964 5400898 CLC_0819 Clostridium botulinum A str. Hall DNA-binding protein YP_001386695.1 836770 D 441771 CDS YP_001386696.1 153935018 5400922 836968..837399 1 NC_009698.1 identified by Glimmer3; hypothetical protein 837399 5400922 CLC_0820 Clostridium botulinum A str. Hall hypothetical protein YP_001386696.1 836968 D 441771 CDS YP_001386697.1 153935775 5401676 837773..838708 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 838708 5401676 CLC_0821 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386697.1 837773 D 441771 CDS YP_001386698.1 153937550 5400953 838701..839837 1 NC_009698.1 hypothetical protein 839837 5400953 CLC_0822 Clostridium botulinum A str. Hall hypothetical protein YP_001386698.1 838701 D 441771 CDS YP_001386699.1 153934884 5401257 840528..840989 1 NC_009698.1 hypothetical protein 840989 5401257 CLC_0823 Clostridium botulinum A str. Hall hypothetical protein YP_001386699.1 840528 D 441771 CDS YP_001386700.1 153935631 5399383 840979..841953 1 NC_009698.1 identified by match to protein family HMM PF00303; thymidylate synthase 841953 thyA 5399383 thyA Clostridium botulinum A str. Hall thymidylate synthase YP_001386700.1 840979 D 441771 CDS YP_001386701.1 153936390 5401088 841965..842723 1 NC_009698.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methlytransferase 842723 5401088 CLC_0825 Clostridium botulinum A str. Hall UbiE/COQ5 family methlytransferase YP_001386701.1 841965 D 441771 CDS YP_001386702.1 153936314 5398455 842769..843983 1 NC_009698.1 thiaminase I 843983 5398455 CLC_0826 Clostridium botulinum A str. Hall thiaminase I YP_001386702.1 842769 D 441771 CDS YP_001386703.1 153937068 5399688 844061..844888 1 NC_009698.1 identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase 844888 thiD-2 5399688 thiD-2 Clostridium botulinum A str. Hall phosphomethylpyrimidine kinase YP_001386703.1 844061 D 441771 CDS YP_001386704.1 153936145 5399492 845060..845293 1 NC_009698.1 identified by Glimmer3; hypothetical protein 845293 5399492 CLC_0828 Clostridium botulinum A str. Hall hypothetical protein YP_001386704.1 845060 D 441771 CDS YP_001386705.1 153936913 5400699 complement(845502..845966) 1 NC_009698.1 identified by match to protein family HMM PF06695; transporter 845966 5400699 CLC_0829 Clostridium botulinum A str. Hall transporter YP_001386705.1 845502 R 441771 CDS YP_001386706.1 153935025 5398556 846362..847150 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 847150 5398556 CLC_0830 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386706.1 846362 D 441771 CDS YP_001386707.1 153935563 5400099 847153..848850 1 NC_009698.1 hypothetical protein 848850 5400099 CLC_0831 Clostridium botulinum A str. Hall hypothetical protein YP_001386707.1 847153 D 441771 CDS YP_001386708.1 153936292 5401035 849126..849818 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 849818 5401035 CLC_0832 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386708.1 849126 D 441771 CDS YP_001386709.1 153937215 5401384 850239..851159 1 NC_009698.1 identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein 851159 5401384 CLC_0833 Clostridium botulinum A str. Hall bacitracin ABC transporter ATP-binding protein YP_001386709.1 850239 D 441771 CDS YP_001386710.1 153935074 5401798 851159..851950 1 NC_009698.1 hypothetical protein 851950 5401798 CLC_0834 Clostridium botulinum A str. Hall hypothetical protein YP_001386710.1 851159 D 441771 CDS YP_001386711.1 153936577 5399901 852201..853058 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 853058 5399901 CLC_0835 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386711.1 852201 D 441771 CDS YP_001386712.1 153935406 5399660 853103..854008 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 854008 5399660 CLC_0836 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386712.1 853103 D 441771 CDS YP_001386713.1 153934641 5399126 854963..855958 1 NC_009698.1 hypothetical protein 855958 5399126 CLC_0837 Clostridium botulinum A str. Hall hypothetical protein YP_001386713.1 854963 D 441771 CDS YP_001386714.1 153937774 5399462 856238..857263 1 NC_009698.1 hypothetical protein 857263 5399462 CLC_0838 Clostridium botulinum A str. Hall hypothetical protein YP_001386714.1 856238 D 441771 CDS YP_001386715.1 153937023 5400766 857447..858139 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 858139 5400766 CLC_0839 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386715.1 857447 D 441771 CDS YP_001386716.1 153935847 5401340 858126..860792 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 860792 5401340 CLC_0840 Clostridium botulinum A str. Hall ABC transporter permease YP_001386716.1 858126 D 441771 CDS YP_001386717.1 153935093 5398871 861003..861122 1 NC_009698.1 identified by Glimmer3; hypothetical protein 861122 5398871 CLC_0841 Clostridium botulinum A str. Hall hypothetical protein YP_001386717.1 861003 D 441771 CDS YP_001386718.1 153935783 5398349 861350..862063 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 862063 5398349 CLC_0842 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386718.1 861350 D 441771 CDS YP_001386719.1 153934959 5400724 862217..863479 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 863479 5400724 CLC_0843 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386719.1 862217 D 441771 CDS YP_001386720.1 153934921 5400290 863669..864310 1 NC_009698.1 identified by match to protein family HMM PF06555; hypothetical protein 864310 5400290 CLC_0844 Clostridium botulinum A str. Hall hypothetical protein YP_001386720.1 863669 D 441771 CDS YP_001386721.1 153935925 5398370 complement(864401..864589) 1 NC_009698.1 identified by match to protein family HMM TIGR02861; small acid-soluble spore protein, H-type 864589 5398370 CLC_0845 Clostridium botulinum A str. Hall small acid-soluble spore protein, H-type YP_001386721.1 864401 R 441771 CDS YP_001386722.1 153936841 5398461 864919..865698 1 NC_009698.1 hypothetical protein 865698 5398461 CLC_0846 Clostridium botulinum A str. Hall hypothetical protein YP_001386722.1 864919 D 441771 CDS YP_001386723.1 153937800 5399938 866364..867161 1 NC_009698.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 867161 dapB-1 5399938 dapB-1 Clostridium botulinum A str. Hall dihydrodipicolinate reductase YP_001386723.1 866364 D 441771 CDS YP_001386724.1 153934546 5401188 867183..868022 1 NC_009698.1 identified by match to protein family HMM PF00581; sulfurtransferase 868022 5401188 CLC_0848 Clostridium botulinum A str. Hall sulfurtransferase YP_001386724.1 867183 D 441771 CDS YP_001386725.1 153935509 5399929 complement(868530..869201) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 869201 5399929 CLC_0849 Clostridium botulinum A str. Hall hypothetical protein YP_001386725.1 868530 R 441771 CDS YP_001386726.1 153934507 5399275 complement(869699..870478) 1 NC_009698.1 identified by similarity to GB:CAD51899.1; hypothetical protein 870478 5399275 CLC_0850 Clostridium botulinum A str. Hall hypothetical protein YP_001386726.1 869699 R 441771 CDS YP_001386727.1 153935472 5398229 complement(870524..870814) 1 NC_009698.1 identified by similarity to RF:XP_857072.1; hypothetical protein 870814 5398229 CLC_0851 Clostridium botulinum A str. Hall hypothetical protein YP_001386727.1 870524 R 441771 CDS YP_001386729.1 153937089 5398516 871441..871698 1 NC_009698.1 identified by Glimmer3; hypothetical protein 871698 5398516 CLC_0853 Clostridium botulinum A str. Hall hypothetical protein YP_001386729.1 871441 D 441771 CDS YP_001386730.1 153935308 5399316 871992..873413 1 NC_009698.1 identified by match to protein family HMM PF00669; flagellin 873413 5399316 CLC_0854 Clostridium botulinum A str. Hall flagellin YP_001386730.1 871992 D 441771 CDS YP_001386732.1 153936190 5399328 complement(873927..874280) 1 NC_009698.1 transposase, OrfA 874280 5399328 CLC_0856 Clostridium botulinum A str. Hall transposase, OrfA YP_001386732.1 873927 R 441771 CDS YP_001386733.1 153935438 5401021 complement(874375..876255) 1 NC_009698.1 identified by match to protein family HMM PF03505; hemagglutinin component HA70 876255 ha70 5401021 ha70 Clostridium botulinum A str. Hall hemagglutinin component HA70 YP_001386733.1 874375 R 441771 CDS YP_001386734.1 153936283 5398652 complement(876269..876709) 1 NC_009698.1 identified by match to protein family HMM PF05588; hemagglutinin component HA17 876709 ha17 5398652 ha17 Clostridium botulinum A str. Hall hemagglutinin component HA17 YP_001386734.1 876269 R 441771 CDS YP_001386735.1 153937529 5401102 complement(876772..877653) 1 NC_009698.1 identified by match to protein family HMM PF00652; hemagglutinin component HA33 877653 ha33 5401102 ha33 Clostridium botulinum A str. Hall hemagglutinin component HA33 YP_001386735.1 876772 R 441771 CDS YP_001386736.1 153934750 5398304 877880..878416 1 NC_009698.1 identified by similarity to PIR:S68219; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR03209; transcriptional regulator BotR, P-21 878416 botR 5398304 botR Clostridium botulinum A str. Hall transcriptional regulator BotR, P-21 YP_001386736.1 877880 D 441771 CDS YP_001386737.1 153935962 5399001 878578..882159 1 NC_009698.1 identified by match to protein family HMM PF01742; match to protein family HMM PF07953; match to protein family HMM PF08470; botulinum neurotoxin type A1 nontoxic-nonhemagglutinin subunit 882159 ntnH 5399001 ntnH Clostridium botulinum A str. Hall botulinum neurotoxin type A1 nontoxic-nonhemagglutinin subunit YP_001386737.1 878578 D 441771 CDS YP_001386738.1 153936924 5398487 882203..886093 1 NC_009698.1 identified by similarity to SP:P10845; similarity to SP:P30996; match to protein family HMM PF01742; match to protein family HMM PF07951; match to protein family HMM PF07952; match to protein family HMM PF07953; botulinum neurotoxin type A1 886093 boNT/A1 5398487 boNT/A1 Clostridium botulinum A str. Hall botulinum neurotoxin type A1 YP_001386738.1 882203 D 441771 CDS YP_001386739.1 153936356 5398963 887371..888093 1 NC_009698.1 identified by match to protein family HMM PF00665; IS3 family transposase 888093 5398963 CLC_0865 Clostridium botulinum A str. Hall IS3 family transposase YP_001386739.1 887371 D 441771 CDS YP_001386740.1 153936065 5401835 888278..889675 1 NC_009698.1 identified by Glimmer3; hypothetical protein 889675 5401835 CLC_0866 Clostridium botulinum A str. Hall hypothetical protein YP_001386740.1 888278 D 441771 CDS YP_001386741.1 153934923 5398497 890011..891180 1 NC_009698.1 identified by match to protein family HMM PF01979; amidohydrolase 891180 5398497 CLC_0867 Clostridium botulinum A str. Hall amidohydrolase YP_001386741.1 890011 D 441771 CDS YP_001386742.1 153937607 5398463 891746..893047 1 NC_009698.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 893047 brnQ-1 5398463 brnQ-1 Clostridium botulinum A str. Hall branched-chain amino acid transport system II carrier protein YP_001386742.1 891746 D 441771 CDS YP_001386743.1 153937309 5398396 893198..894514 1 NC_009698.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 894514 brnQ-2 5398396 brnQ-2 Clostridium botulinum A str. Hall branched-chain amino acid transport system II carrier protein YP_001386743.1 893198 D 441771 CDS YP_001386744.1 153934994 5399244 complement(894593..897073) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00496; methyl-accepting chemotaxis protein/ extracellular solute-binding protein family 5 897073 5399244 CLC_0870 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein/ extracellular solute-binding protein family 5 YP_001386744.1 894593 R 441771 CDS YP_001386745.1 153937853 5400311 897296..897532 1 NC_009698.1 identified by match to protein family HMM PF04023; ferrous iron transport protein A 897532 feoA-1 5400311 feoA-1 Clostridium botulinum A str. Hall ferrous iron transport protein A YP_001386745.1 897296 D 441771 CDS YP_008472678.1 532643416 16691475 897677..898459 1 NC_009698.1 iron transporter FeoB 898459 FeoB 16691475 FeoB Clostridium botulinum A str. Hall iron transporter FeoB YP_008472678.1 897677 D 441771 CDS YP_008472679.1 532643417 16691474 898456..899979 1 NC_009698.1 iron transporter FeoB 899979 FeoB 16691474 FeoB Clostridium botulinum A str. Hall iron transporter FeoB YP_008472679.1 898456 D 441771 CDS YP_001386746.1 153936634 5400186 900694..901308 1 NC_009698.1 identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; alpha-ribazole-5'-phosphate phosphatase 901308 cobC 5400186 cobC Clostridium botulinum A str. Hall alpha-ribazole-5'-phosphate phosphatase YP_001386746.1 900694 D 441771 CDS YP_001386747.1 153934760 5399583 901453..903015 1 NC_009698.1 identified by match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 903015 5399583 CLC_0875 Clostridium botulinum A str. Hall von Willebrand factor A YP_001386747.1 901453 D 441771 CDS YP_001386748.1 153935741 5399364 903286..904032 1 NC_009698.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 904032 cobS 5399364 cobS Clostridium botulinum A str. Hall cobalamin synthase YP_001386748.1 903286 D 441771 CDS YP_001386749.1 153935846 5399823 904490..905266 1 NC_009698.1 hypothetical protein 905266 5399823 CLC_0877 Clostridium botulinum A str. Hall hypothetical protein YP_001386749.1 904490 D 441771 CDS YP_001386750.1 153935746 5398348 905575..905856 1 NC_009698.1 hypothetical protein 905856 5398348 CLC_0878 Clostridium botulinum A str. Hall hypothetical protein YP_001386750.1 905575 D 441771 CDS YP_001386751.1 153934705 5398594 905987..906169 1 NC_009698.1 hypothetical protein 906169 5398594 CLC_0879 Clostridium botulinum A str. Hall hypothetical protein YP_001386751.1 905987 D 441771 CDS YP_001386752.1 153937229 5401619 906187..906435 1 NC_009698.1 identified by match to protein family HMM PF07875; hypothetical protein 906435 5401619 CLC_0880 Clostridium botulinum A str. Hall hypothetical protein YP_001386752.1 906187 D 441771 CDS YP_001386753.1 153935459 5400545 907004..908356 1 NC_009698.1 hypothetical protein 908356 5400545 CLC_0881 Clostridium botulinum A str. Hall hypothetical protein YP_001386753.1 907004 D 441771 CDS YP_001386754.1 153934509 5399361 908627..908980 1 NC_009698.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367; 6-pyruvoyl-tetrahydropterin synthase 908980 5399361 CLC_0882 Clostridium botulinum A str. Hall 6-pyruvoyl-tetrahydropterin synthase YP_001386754.1 908627 D 441771 CDS YP_001386755.1 153937537 5399141 909075..910271 1 NC_009698.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 910271 folP 5399141 folP Clostridium botulinum A str. Hall dihydropteroate synthase YP_001386755.1 909075 D 441771 CDS YP_001386756.1 153935059 5398998 910403..910654 1 NC_009698.1 hypothetical protein 910654 5398998 CLC_0884 Clostridium botulinum A str. Hall hypothetical protein YP_001386756.1 910403 D 441771 CDS YP_001386757.1 153935832 5400193 910754..911209 1 NC_009698.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 911209 folK 5400193 folK Clostridium botulinum A str. Hall 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001386757.1 910754 D 441771 CDS YP_001386758.1 153937375 5398539 911328..911768 1 NC_009698.1 identified by match to protein family HMM PF00011; heat shock protein 911768 5398539 CLC_0886 Clostridium botulinum A str. Hall heat shock protein YP_001386758.1 911328 D 441771 CDS YP_001386759.1 153935434 5401050 912088..913440 1 NC_009698.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; MerR family transcriptional regulator 913440 5401050 CLC_0887 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001386759.1 912088 D 441771 CDS YP_001386760.1 153937040 5401359 913495..914670 1 NC_009698.1 identified by match to protein family HMM PF01041; exopolysaccharide biosynthesis protein 914670 5401359 CLC_0888 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001386760.1 913495 D 441771 CDS YP_001386761.1 153937789 5399892 914812..915933 1 NC_009698.1 identified by match to protein family HMM PF01041; pleiotropic regulatory protein 915933 5399892 CLC_0889 Clostridium botulinum A str. Hall pleiotropic regulatory protein YP_001386761.1 914812 D 441771 CDS YP_001386762.1 153935154 5400754 916530..917477 1 NC_009698.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 917477 5400754 CLC_0890 Clostridium botulinum A str. Hall DNA-cytosine methyltransferase YP_001386762.1 916530 D 441771 CDS YP_001386763.1 153934874 5399774 917771..918283 1 NC_009698.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02954; ECF subfamily RNA polymerase sigma factor 918283 5399774 CLC_0891 Clostridium botulinum A str. Hall ECF subfamily RNA polymerase sigma factor YP_001386763.1 917771 D 441771 CDS YP_001386764.1 153935625 5399102 918288..919451 1 NC_009698.1 identified by Glimmer3; hypothetical protein 919451 5399102 CLC_0892 Clostridium botulinum A str. Hall hypothetical protein YP_001386764.1 918288 D 441771 CDS YP_001386765.1 153937246 5401786 complement(919743..920297) 1 NC_009698.1 flavoredoxin 920297 5401786 CLC_0893 Clostridium botulinum A str. Hall flavoredoxin YP_001386765.1 919743 R 441771 CDS YP_001386766.1 153936272 5400513 920616..921428 1 NC_009698.1 identified by match to protein family HMM PF00561; non-heme haloperoxidase 921428 5400513 CLC_0894 Clostridium botulinum A str. Hall non-heme haloperoxidase YP_001386766.1 920616 D 441771 CDS YP_001386767.1 153935006 5400822 921728..922396 1 NC_009698.1 identified by match to protein family HMM PF03596; cadmium resistance transporter CadD 922396 cadD 5400822 cadD Clostridium botulinum A str. Hall cadmium resistance transporter CadD YP_001386767.1 921728 D 441771 CDS YP_001386768.1 153936052 5398667 922545..922961 1 NC_009698.1 identified by match to protein family HMM PF04463; hypothetical protein 922961 5398667 CLC_0896 Clostridium botulinum A str. Hall hypothetical protein YP_001386768.1 922545 D 441771 CDS YP_001386769.1 153937580 5398657 complement(923499..924293) 1 NC_009698.1 ABC transporter permease 924293 5398657 CLC_0897 Clostridium botulinum A str. Hall ABC transporter permease YP_001386769.1 923499 R 441771 CDS YP_001386770.1 153936813 5398934 complement(924312..925229) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 925229 5398934 CLC_0898 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386770.1 924312 R 441771 CDS YP_001386771.1 153934537 5400499 complement(925226..926347) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 926347 5400499 CLC_0899 Clostridium botulinum A str. Hall DNA-binding protein YP_001386771.1 925226 R 441771 CDS YP_008472680.1 532643419 16691476 926779..927126 1 NC_009698.1 hypothetical protein 927126 16691476 CLC_04395 Clostridium botulinum A str. Hall hypothetical protein YP_008472680.1 926779 D 441771 CDS YP_001386773.1 153937451 5398734 927783..928631 1 NC_009698.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 928631 5398734 CLC_0901 Clostridium botulinum A str. Hall PhzF family phenazine biosynthesis protein YP_001386773.1 927783 D 441771 CDS YP_001386774.1 153936497 5399650 928806..929174 1 NC_009698.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 929174 5399650 CLC_0902 Clostridium botulinum A str. Hall AsnC family transcriptional regulator YP_001386774.1 928806 D 441771 CDS YP_001386775.1 153935507 5399039 929521..930333 1 NC_009698.1 identified by match to protein family HMM PF00561; non-heme haloperoxidase 930333 5399039 CLC_0903 Clostridium botulinum A str. Hall non-heme haloperoxidase YP_001386775.1 929521 D 441771 CDS YP_001386776.1 153935863 5398227 930856..931431 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 931431 5398227 CLC_0904 Clostridium botulinum A str. Hall acetyltransferase YP_001386776.1 930856 D 441771 CDS YP_001386777.1 153934483 5401442 931489..932142 1 NC_009698.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 932142 5401442 CLC_0905 Clostridium botulinum A str. Hall pentapeptide repeat-containing protein YP_001386777.1 931489 D 441771 CDS YP_001386778.1 153937468 5398906 complement(932412..932981) 1 NC_009698.1 identified by match to protein family HMM PF02525; flavodoxin-like fold domain-containing protein 932981 5398906 CLC_0906 Clostridium botulinum A str. Hall flavodoxin-like fold domain-containing protein YP_001386778.1 932412 R 441771 CDS YP_001386779.1 153934522 5401607 complement(932999..933553) 1 NC_009698.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; NADPH-dependent FMN reductase 933553 5401607 CLC_0907 Clostridium botulinum A str. Hall NADPH-dependent FMN reductase YP_001386779.1 932999 R 441771 CDS YP_001386780.1 153937139 5399066 complement(933658..933984) 1 NC_009698.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 933984 5399066 CLC_0908 Clostridium botulinum A str. Hall ArsR family transcriptional regulator YP_001386780.1 933658 R 441771 CDS YP_001386781.1 153936367 5400631 complement(934328..935155) 1 NC_009698.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 935155 5400631 CLC_0909 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001386781.1 934328 R 441771 CDS YP_001386782.1 153936926 5400897 935268..935885 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 935885 5400897 CLC_0910 Clostridium botulinum A str. Hall acetyltransferase YP_001386782.1 935268 D 441771 CDS YP_001386783.1 153936165 5398902 936091..936606 1 NC_009698.1 identified by match to protein family HMM PF04229; hypothetical protein 936606 5398902 CLC_0911 Clostridium botulinum A str. Hall hypothetical protein YP_001386783.1 936091 D 441771 CDS YP_001386784.1 153934997 5398296 936669..937193 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 937193 5398296 CLC_0912 Clostridium botulinum A str. Hall acetyltransferase YP_001386784.1 936669 D 441771 CDS YP_001386785.1 153937285 5401248 complement(937898..938599) 1 NC_009698.1 identified by match to protein family HMM PF02678; hypothetical protein 938599 5401248 CLC_0913 Clostridium botulinum A str. Hall hypothetical protein YP_001386785.1 937898 R 441771 CDS YP_001386786.1 153937155 5399840 complement(938874..939182) 1 NC_009698.1 identified by match to protein family HMM PF01638; transcriptional regulator 939182 5399840 CLC_0914 Clostridium botulinum A str. Hall transcriptional regulator YP_001386786.1 938874 R 441771 CDS YP_001386787.1 153936304 5401116 939311..939940 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 939940 5401116 CLC_0915 Clostridium botulinum A str. Hall nitroreductase YP_001386787.1 939311 D 441771 CDS YP_001386788.1 153935974 5400048 940304..941746 1 NC_009698.1 lipase 941746 5400048 CLC_0916 Clostridium botulinum A str. Hall lipase YP_001386788.1 940304 D 441771 CDS YP_001386789.1 153936755 5401282 complement(941981..943189) 1 NC_009698.1 identified by match to protein family HMM PF00190; match to protein family HMM PF07883; oxalate decarboxylase 943189 oxdD 5401282 oxdD Clostridium botulinum A str. Hall oxalate decarboxylase YP_001386789.1 941981 R 441771 CDS YP_001386790.1 153935545 5401504 complement(943355..943933) 1 NC_009698.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; decarboxylase 943933 5401504 CLC_0918 Clostridium botulinum A str. Hall decarboxylase YP_001386790.1 943355 R 441771 CDS YP_001386791.1 153935214 5400944 complement(943991..944446) 1 NC_009698.1 identified by match to protein family HMM PF04657; hypothetical protein 944446 5400944 CLC_0919 Clostridium botulinum A str. Hall hypothetical protein YP_001386791.1 943991 R 441771 CDS YP_001386792.1 153934668 5399969 944560..945447 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 945447 5399969 CLC_0920 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001386792.1 944560 D 441771 CDS YP_001386793.1 153937394 5400729 945720..946166 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 946166 5400729 CLC_0921 Clostridium botulinum A str. Hall acetyltransferase YP_001386793.1 945720 D 441771 CDS YP_001386794.1 153934783 5399986 complement(946817..947227) 1 NC_009698.1 hypothetical protein 947227 5399986 CLC_0923 Clostridium botulinum A str. Hall hypothetical protein YP_001386794.1 946817 R 441771 CDS YP_001386795.1 153937443 5398376 947296..947670 1 NC_009698.1 hypothetical protein 947670 5398376 CLC_0924 Clostridium botulinum A str. Hall hypothetical protein YP_001386795.1 947296 D 441771 CDS YP_001386796.1 153936253 5401415 complement(947730..948152) 1 NC_009698.1 hypothetical protein 948152 5401415 CLC_0925 Clostridium botulinum A str. Hall hypothetical protein YP_001386796.1 947730 R 441771 CDS YP_001386797.1 153935383 5399441 948275..949207 1 NC_009698.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 949207 5399441 CLC_0926 Clostridium botulinum A str. Hall hypothetical protein YP_001386797.1 948275 D 441771 CDS YP_001386798.1 153934729 5398806 complement(949415..949885) 1 NC_009698.1 hypothetical protein 949885 5398806 CLC_0927 Clostridium botulinum A str. Hall hypothetical protein YP_001386798.1 949415 R 441771 CDS YP_001386799.1 153937761 5400858 complement(949885..950664) 1 NC_009698.1 hypothetical protein 950664 5400858 CLC_0928 Clostridium botulinum A str. Hall hypothetical protein YP_001386799.1 949885 R 441771 CDS YP_001386800.1 153936227 5400856 complement(951327..951827) 1 NC_009698.1 identified by match to protein family HMM PF01327; peptide deformylase 951827 5400856 CLC_0929 Clostridium botulinum A str. Hall peptide deformylase YP_001386800.1 951327 R 441771 CDS YP_001386801.1 153935773 5401600 952060..953496 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 953496 5401600 CLC_0930 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001386801.1 952060 D 441771 CDS YP_001386802.1 153935235 5401135 complement(953574..954092) 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 954092 5401135 CLC_0931 Clostridium botulinum A str. Hall nitroreductase YP_001386802.1 953574 R 441771 CDS YP_001386803.1 153934707 5398612 complement(954335..955141) 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 955141 5398612 CLC_0932 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001386803.1 954335 R 441771 CDS YP_001386804.1 153935729 5398893 955913..956746 1 NC_009698.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; transcription antiterminator 956746 5398893 CLC_0933 Clostridium botulinum A str. Hall transcription antiterminator YP_001386804.1 955913 D 441771 CDS YP_001386805.1 153936097 5401621 956871..958760 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; match to protein family HMM TIGR01995; PTS system beta-glucoside-specific transporter subunit IIABC 958760 5401621 CLC_0934 Clostridium botulinum A str. Hall PTS system beta-glucoside-specific transporter subunit IIABC YP_001386805.1 956871 D 441771 CDS YP_001386806.1 153937231 5398926 959089..960510 1 NC_009698.1 identified by match to protein family HMM PF00232; glycosyl hydrolase 960510 5398926 CLC_0935 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001386806.1 959089 D 441771 CDS YP_001386807.1 153937029 5398976 960638..960844 1 NC_009698.1 identified by Glimmer3; hypothetical protein 960844 5398976 CLC_0936 Clostridium botulinum A str. Hall hypothetical protein YP_001386807.1 960638 D 441771 CDS YP_001386808.1 153935814 5400547 complement(961046..961999) 1 NC_009698.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase 961999 mraY-1 5400547 mraY-1 Clostridium botulinum A str. Hall phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001386808.1 961046 R 441771 CDS YP_001386809.1 153935353 5399089 962412..963272 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 963272 5399089 CLC_0938 Clostridium botulinum A str. Hall DNA-binding protein YP_001386809.1 962412 D 441771 CDS YP_001386810.1 153937782 5399576 963696..964130 1 NC_009698.1 chloramphenicol O-acetyltransferase 964130 5399576 CLC_0939 Clostridium botulinum A str. Hall chloramphenicol O-acetyltransferase YP_001386810.1 963696 D 441771 CDS YP_001386811.1 153935345 5398729 965107..965730 1 NC_009698.1 identified by match to protein family HMM PF06555; hypothetical protein 965730 5398729 CLC_0941 Clostridium botulinum A str. Hall hypothetical protein YP_001386811.1 965107 D 441771 CDS YP_001386812.1 153935061 5400259 complement(966332..968131) 1 NC_009698.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; multicopper oxidase 968131 5400259 CLC_0942 Clostridium botulinum A str. Hall multicopper oxidase YP_001386812.1 966332 R 441771 CDS YP_001386813.1 153936891 5400793 968295..968474 1 NC_009698.1 hypothetical protein 968474 5400793 CLC_0943 Clostridium botulinum A str. Hall hypothetical protein YP_001386813.1 968295 D 441771 CDS YP_001386814.1 153937377 5400195 complement(968716..969105) 1 NC_009698.1 hypothetical protein 969105 5400195 CLC_0944 Clostridium botulinum A str. Hall hypothetical protein YP_001386814.1 968716 R 441771 CDS YP_001386815.1 153935271 5398989 969297..970244 1 NC_009698.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 970244 5398989 CLC_0945 Clostridium botulinum A str. Hall DNA-cytosine methyltransferase YP_001386815.1 969297 D 441771 CDS YP_001386816.1 153936067 5401052 complement(970773..972005) 1 NC_009698.1 identified by match to protein family HMM PF04371; peptidyl-arginine deiminase 972005 5401052 CLC_0946 Clostridium botulinum A str. Hall peptidyl-arginine deiminase YP_001386816.1 970773 R 441771 CDS YP_008472681.1 532643418 5399204 972302..972910 1 NC_009698.1 transcriptional regulator 972910 5399204 CLC_0947 Clostridium botulinum A str. Hall transcriptional regulator YP_008472681.1 972302 D 441771 CDS YP_001386817.1 153936903 5398499 972940..973803 1 NC_009698.1 identified by match to protein family HMM PF00892; DMT family permease 973803 5398499 CLC_0948 Clostridium botulinum A str. Hall DMT family permease YP_001386817.1 972940 D 441771 CDS YP_001386818.1 153935430 5401286 974159..974746 1 NC_009698.1 identified by match to protein family HMM PF04229; hypothetical protein 974746 5401286 CLC_0949 Clostridium botulinum A str. Hall hypothetical protein YP_001386818.1 974159 D 441771 CDS YP_001386819.1 153934554 5400477 complement(974827..975204) 1 NC_009698.1 identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 975204 5400477 CLC_0950 Clostridium botulinum A str. Hall ErfK/YbiS/YcfS/YnhG family protein YP_001386819.1 974827 R 441771 CDS YP_001386820.1 153937404 5400021 complement(975378..975707) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 975707 5400021 CLC_0951 Clostridium botulinum A str. Hall hypothetical protein YP_001386820.1 975378 R 441771 CDS YP_001386821.1 153936579 5401495 complement(975971..976279) 1 NC_009698.1 hypothetical protein 976279 5401495 CLC_0952 Clostridium botulinum A str. Hall hypothetical protein YP_001386821.1 975971 R 441771 CDS YP_001386822.1 153937593 5400717 complement(976385..976594) 1 NC_009698.1 acetyltransferase domain-containing protein 976594 5400717 CLC_0953 Clostridium botulinum A str. Hall acetyltransferase domain-containing protein YP_001386822.1 976385 R 441771 CDS YP_001386823.1 153936588 5399181 976960..977730 1 NC_009698.1 identified by Glimmer3; hypothetical protein 977730 5399181 CLC_0954 Clostridium botulinum A str. Hall hypothetical protein YP_001386823.1 976960 D 441771 CDS YP_001386824.1 153935442 5399483 978269..979876 1 NC_009698.1 hypothetical protein 979876 5399483 CLC_0955 Clostridium botulinum A str. Hall hypothetical protein YP_001386824.1 978269 D 441771 CDS YP_001386826.1 153937433 5400777 complement(980240..982600) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02687; ABC transporter ATP-binding protein/permease 982600 5400777 CLC_0957 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001386826.1 980240 R 441771 CDS YP_001386827.1 153936439 5399138 982760..983431 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 983431 5399138 CLC_0958 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386827.1 982760 D 441771 CDS YP_001386828.1 153935184 5399311 984810..985358 1 NC_009698.1 identified by match to protein family HMM PF02632; BioY family protein 985358 5399311 CLC_0960 Clostridium botulinum A str. Hall BioY family protein YP_001386828.1 984810 D 441771 CDS YP_001386829.1 153937616 5401076 985763..987469 1 NC_009698.1 identified by Glimmer3; hypothetical protein 987469 5401076 CLC_0961 Clostridium botulinum A str. Hall hypothetical protein YP_001386829.1 985763 D 441771 CDS YP_001386830.1 153935802 5398766 987811..988356 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 988356 5398766 CLC_0962 Clostridium botulinum A str. Hall acetyltransferase YP_001386830.1 987811 D 441771 CDS YP_001386831.1 153936900 5400867 988435..990042 1 NC_009698.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR00498; LexA repressor 990042 5400867 CLC_0963 Clostridium botulinum A str. Hall LexA repressor YP_001386831.1 988435 D 441771 CDS YP_001386832.1 153934642 5399922 990320..990877 1 NC_009698.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase 990877 cobU 5399922 cobU Clostridium botulinum A str. Hall adenosylcobinamide kinase YP_001386832.1 990320 D 441771 CDS YP_001386833.1 153935389 5400474 complement(991299..992063) 1 NC_009698.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; transcriptional activator TipA 992063 tipA 5400474 tipA Clostridium botulinum A str. Hall transcriptional activator TipA YP_001386833.1 991299 R 441771 CDS YP_001386836.1 153935702 5400053 992769..994250 1 NC_009698.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 994250 cobQ 5400053 cobQ Clostridium botulinum A str. Hall cobyric acid synthase YP_001386836.1 992769 D 441771 CDS YP_001386837.1 153936192 5399562 994252..995214 1 NC_009698.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 995214 cobD 5399562 cobD Clostridium botulinum A str. Hall cobalamin biosynthesis protein YP_001386837.1 994252 D 441771 CDS YP_001386838.1 153936585 5398409 995433..996521 1 NC_009698.1 identified by match to protein family HMM PF00155; aminotransferase 996521 5398409 CLC_0970 Clostridium botulinum A str. Hall aminotransferase YP_001386838.1 995433 D 441771 CDS YP_001386839.1 153937295 5398876 996795..997514 1 NC_009698.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 997514 cbiM 5398876 cbiM Clostridium botulinum A str. Hall cobalt transport protein CbiM YP_001386839.1 996795 D 441771 CDS YP_001386840.1 153937111 5398335 997518..997817 1 NC_009698.1 identified by match to protein family HMM PF02553; match to protein family HMM TIGR01165; cobalt transport protein 997817 cbiN 5398335 cbiN Clostridium botulinum A str. Hall cobalt transport protein YP_001386840.1 997518 D 441771 CDS YP_001386841.2 532643394 5401098 997780..998478 1 NC_009698.1 cobalt ABC transporter permease CbiQ 998478 cbiQ 5401098 cbiQ Clostridium botulinum A str. Hall cobalt ABC transporter permease CbiQ YP_001386841.2 997780 D 441771 CDS YP_001386842.1 153937217 5400109 998902..999549 1 NC_009698.1 catalyzes the formation of siroheme from precorrin-2; precorrin-2 dehydrogenase 999549 5400109 CLC_0974 Clostridium botulinum A str. Hall precorrin-2 dehydrogenase YP_001386842.1 998902 D 441771 CDS YP_001386843.1 153936114 5398476 999518..1000390 1 NC_009698.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1000390 hemC 5398476 hemC Clostridium botulinum A str. Hall porphobilinogen deaminase YP_001386843.1 999518 D 441771 CDS YP_001386844.1 153935140 5399405 1000526..1001986 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 1001986 cobA/hemD 5399405 cobA/hemD Clostridium botulinum A str. Hall uroporphyrinogen III synthase/methyltransferase YP_001386844.1 1000526 D 441771 CDS YP_001386845.1 153937637 5400837 1002131..1002313 1 NC_009698.1 hypothetical protein 1002313 5400837 CLC_0977 Clostridium botulinum A str. Hall hypothetical protein YP_001386845.1 1002131 D 441771 CDS YP_001386846.1 153936619 5401208 1002575..1003549 1 NC_009698.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1003549 hemB 5401208 hemB Clostridium botulinum A str. Hall delta-aminolevulinic acid dehydratase YP_001386846.1 1002575 D 441771 CDS YP_001386847.1 153935703 5401572 1003670..1004992 1 NC_009698.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1004992 cobB 5401572 cobB Clostridium botulinum A str. Hall cobyrinic acid a,c-diamide synthase YP_001386847.1 1003670 D 441771 CDS YP_001386848.1 153934794 5400376 1005017..1005643 1 NC_009698.1 catalyzes the interconversion of precorrin-8X and cobyrinic acid; precorrin-8X methylmutase 1005643 cbiC 5400376 cbiC Clostridium botulinum A str. Hall precorrin-8X methylmutase YP_001386848.1 1005017 D 441771 CDS YP_001386849.1 153935602 5398410 1005837..1006679 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1006679 5398410 CLC_0981 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386849.1 1005837 D 441771 CDS YP_001386850.1 153935181 5399695 1006855..1007598 1 NC_009698.1 hypothetical protein 1007598 5399695 CLC_0982 Clostridium botulinum A str. Hall hypothetical protein YP_001386850.1 1006855 D 441771 CDS YP_001386851.1 153937743 5399228 1007904..1008512 1 NC_009698.1 identified by match to protein family HMM PF01966; HD domain-containing protein 1008512 5399228 CLC_0983 Clostridium botulinum A str. Hall HD domain-containing protein YP_001386851.1 1007904 D 441771 CDS YP_001386852.1 153936785 5398763 1008568..1008936 1 NC_009698.1 hypothetical protein 1008936 5398763 CLC_0984 Clostridium botulinum A str. Hall hypothetical protein YP_001386852.1 1008568 D 441771 CDS YP_001386853.1 153935424 5399305 1009058..1010332 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1010332 5399305 CLC_0985 Clostridium botulinum A str. Hall hypothetical protein YP_001386853.1 1009058 D 441771 CDS YP_001386854.1 153934480 5398956 1010409..1010837 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1010837 5398956 CLC_0986 Clostridium botulinum A str. Hall acetyltransferase YP_001386854.1 1010409 D 441771 CDS YP_001386855.1 153937369 5401254 1011088..1011789 1 NC_009698.1 identified by match to protein family HMM PF02661; Fic family protein 1011789 5401254 CLC_0987 Clostridium botulinum A str. Hall Fic family protein YP_001386855.1 1011088 D 441771 CDS YP_001386856.1 153935938 5401604 1011819..1012340 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 1012340 5401604 CLC_0988 Clostridium botulinum A str. Hall nitroreductase YP_001386856.1 1011819 D 441771 CDS YP_001386857.1 153935885 5400301 1012407..1012703 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1012703 5400301 CLC_0989 Clostridium botulinum A str. Hall hypothetical protein YP_001386857.1 1012407 D 441771 CDS YP_001386858.1 153934945 5398568 1012811..1013344 1 NC_009698.1 identified by match to protein family HMM PF04229; hypothetical protein 1013344 5398568 CLC_0990 Clostridium botulinum A str. Hall hypothetical protein YP_001386858.1 1012811 D 441771 CDS YP_001386859.1 153937445 5399556 1013418..1014497 1 NC_009698.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1014497 cbiD 5399556 cbiD Clostridium botulinum A str. Hall cobalt-precorrin-6A synthase YP_001386859.1 1013418 D 441771 CDS YP_001386860.1 153935805 5398404 1014674..1015324 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6y C5,15-methyltransferase subunit CbiE 1015324 cbiE 5398404 cbiE Clostridium botulinum A str. Hall precorrin-6y C5,15-methyltransferase subunit CbiE YP_001386860.1 1014674 D 441771 CDS YP_001386861.1 153936317 5401404 1015551..1016054 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1016054 5401404 CLC_0993 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386861.1 1015551 D 441771 CDS YP_001386862.1 153935333 5401763 1016247..1016822 1 NC_009698.1 identified by match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase subunit CbiT 1016822 cbiT 5401763 cbiT Clostridium botulinum A str. Hall precorrin-6Y C5,15-methyltransferase subunit CbiT YP_001386862.1 1016247 D 441771 CDS YP_001386863.1 153934978 5399495 1016822..1017253 1 NC_009698.1 hypothetical protein 1017253 5399495 CLC_0995 Clostridium botulinum A str. Hall hypothetical protein YP_001386863.1 1016822 D 441771 CDS YP_001386864.1 153937715 5399319 1017289..1017840 1 NC_009698.1 hypothetical protein 1017840 5399319 CLC_0996 Clostridium botulinum A str. Hall hypothetical protein YP_001386864.1 1017289 D 441771 CDS YP_008472682.1 532643407 5400619 1017888..1018202 1 NC_009698.1 hypothetical protein 1018202 5400619 CLC_0997 Clostridium botulinum A str. Hall hypothetical protein YP_008472682.1 1017888 D 441771 CDS YP_001386866.1 153936691 5400506 1018338..1018529 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1018529 5400506 CLC_0998 Clostridium botulinum A str. Hall hypothetical protein YP_001386866.1 1018338 D 441771 CDS YP_001386867.1 153934898 5401816 1018572..1019024 1 NC_009698.1 hypothetical protein 1019024 5401816 CLC_0999 Clostridium botulinum A str. Hall hypothetical protein YP_001386867.1 1018572 D 441771 CDS YP_001386868.1 153937166 5400584 1019084..1019425 1 NC_009698.1 hypothetical protein 1019425 5400584 CLC_1000 Clostridium botulinum A str. Hall hypothetical protein YP_001386868.1 1019084 D 441771 CDS YP_001386869.1 153936120 5400927 1019545..1020084 1 NC_009698.1 identified by match to protein family HMM PF00857; isochorismatase 1020084 5400927 CLC_1001 Clostridium botulinum A str. Hall isochorismatase YP_001386869.1 1019545 D 441771 CDS YP_001386870.1 153934800 5401006 1020379..1021095 1 NC_009698.1 catalyzes the formation of precorrin-3A from precorrin-2; cobalt-precorrin-2 C(20)-methyltransferase 1021095 cobI 5401006 cobI Clostridium botulinum A str. Hall cobalt-precorrin-2 C(20)-methyltransferase YP_001386870.1 1020379 D 441771 CDS YP_001386871.1 153935265 5400654 1021114..1021878 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 1021878 cobM 5400654 cobM Clostridium botulinum A str. Hall precorrin-4 C(11)-methyltransferase YP_001386871.1 1021114 D 441771 CDS YP_001386872.1 153936056 5400570 1022169..1023221 1 NC_009698.1 identified by match to protein family HMM PF01890; cobalamin biosynthesis protein CbiG 1023221 cbiG 5400570 cbiG Clostridium botulinum A str. Hall cobalamin biosynthesis protein CbiG YP_001386872.1 1022169 D 441771 CDS YP_001386873.1 153934736 5401091 1023379..1024110 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 1024110 cobJ 5401091 cobJ Clostridium botulinum A str. Hall precorrin-3B C(17)-methyltransferase YP_001386873.1 1023379 D 441771 CDS YP_001386874.1 153935010 5400782 1024244..1025011 1 NC_009698.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 1025011 cobK 5400782 cobK Clostridium botulinum A str. Hall cobalt-precorrin-6x reductase YP_001386874.1 1024244 D 441771 CDS YP_001386875.1 153936266 5401775 1025091..1025579 1 NC_009698.1 hypothetical protein 1025579 5401775 CLC_1007 Clostridium botulinum A str. Hall hypothetical protein YP_001386875.1 1025091 D 441771 CDS YP_001386876.1 153935693 5400367 1025755..1026537 1 NC_009698.1 identified by match to protein family HMM PF01903; match to protein family HMM PF06180; anaerobic sirohydrochlorin cobaltochelatase 1026537 cbiK 5400367 cbiK Clostridium botulinum A str. Hall anaerobic sirohydrochlorin cobaltochelatase YP_001386876.1 1025755 D 441771 CDS YP_001386877.1 153936017 5401268 1026550..1027389 1 NC_009698.1 identified by match to protein family HMM PF00288; kinase 1027389 5401268 CLC_1009 Clostridium botulinum A str. Hall kinase YP_001386877.1 1026550 D 441771 CDS YP_001386878.1 153935290 5401163 1027537..1028058 1 NC_009698.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1028058 cobO 5401163 cobO Clostridium botulinum A str. Hall cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001386878.1 1027537 D 441771 CDS YP_001386879.1 153937427 5400579 1028311..1029000 1 NC_009698.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1029000 5400579 CLC_1011 Clostridium botulinum A str. Hall Crp/FNR family transcriptional regulator YP_001386879.1 1028311 D 441771 CDS YP_001386880.1 153934673 5399657 1029090..1029854 1 NC_009698.1 identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 1029854 5399657 CLC_1012 Clostridium botulinum A str. Hall formate/nitrite transporter family protein YP_001386880.1 1029090 D 441771 CDS YP_001386881.1 153934778 5399173 1029874..1030902 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM TIGR02910; anaerobic sulfite reductase subunit A 1030902 asrA 5399173 asrA Clostridium botulinum A str. Hall anaerobic sulfite reductase subunit A YP_001386881.1 1029874 D 441771 CDS YP_001386882.1 153937222 5398601 1030889..1031686 1 NC_009698.1 with AsrAC catalyzes the reduction of sulfite to hydrogen sulfide; anaerobic sulfite reductase subunit B 1031686 asrB 5398601 asrB Clostridium botulinum A str. Hall anaerobic sulfite reductase subunit B YP_001386882.1 1030889 D 441771 CDS YP_001386883.1 153936257 5400738 1031699..1032664 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02912; anaerobic sulfite reductase subunit C 1032664 arsC 5400738 arsC Clostridium botulinum A str. Hall anaerobic sulfite reductase subunit C YP_001386883.1 1031699 D 441771 CDS YP_001386884.1 153935399 5401437 1033018..1034040 1 NC_009698.1 identified by match to protein family HMM PF00994; molybdopterin binding protein 1034040 5401437 CLC_1016 Clostridium botulinum A str. Hall molybdopterin binding protein YP_001386884.1 1033018 D 441771 CDS YP_001386885.1 153937763 5398810 1034352..1035152 1 NC_009698.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; anion ABC transporter solute-binding protein 1035152 5398810 CLC_1017 Clostridium botulinum A str. Hall anion ABC transporter solute-binding protein YP_001386885.1 1034352 D 441771 CDS YP_001386886.1 153937035 5400238 1035172..1035954 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01581; anion ABC transporter permease 1035954 5400238 CLC_1018 Clostridium botulinum A str. Hall anion ABC transporter permease YP_001386886.1 1035172 D 441771 CDS YP_001386887.1 153935806 5401575 1035969..1036667 1 NC_009698.1 identified by match to protein family HMM PF00005; anion ABC transporter ATP-binding protein 1036667 5401575 CLC_1019 Clostridium botulinum A str. Hall anion ABC transporter ATP-binding protein YP_001386887.1 1035969 D 441771 CDS YP_001386888.1 153935100 5400734 1036651..1037379 1 NC_009698.1 hypothetical protein 1037379 5400734 CLC_1020 Clostridium botulinum A str. Hall hypothetical protein YP_001386888.1 1036651 D 441771 CDS YP_001386889.1 153935436 5401764 1038210..1039229 1 NC_009698.1 hypothetical protein 1039229 5401764 CLC_1021 Clostridium botulinum A str. Hall hypothetical protein YP_001386889.1 1038210 D 441771 CDS YP_001386890.1 153934916 5399134 1039250..1040137 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1040137 5399134 CLC_1022 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001386890.1 1039250 D 441771 CDS YP_001386891.1 153935618 5398650 1040141..1040917 1 NC_009698.1 hypothetical protein 1040917 5398650 CLC_1023 Clostridium botulinum A str. Hall hypothetical protein YP_001386891.1 1040141 D 441771 CDS YP_001386892.1 153936363 5398758 1041562..1042284 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1042284 5398758 CLC_1024 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386892.1 1041562 D 441771 CDS YP_001386893.1 153935811 5399264 1042274..1043695 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1043695 5399264 CLC_1025 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386893.1 1042274 D 441771 CDS YP_001386894.1 153936969 5398359 complement(1044073..1044843) 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1044843 5398359 CLC_1026 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001386894.1 1044073 R 441771 CDS YP_001386895.1 153934850 5399974 complement(1044844..1045911) 1 NC_009698.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; iron ABC transporter permease 1045911 5399974 CLC_1027 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386895.1 1044844 R 441771 CDS YP_001386896.1 153935415 5400595 complement(1045924..1046946) 1 NC_009698.1 identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein 1046946 5400595 CLC_1028 Clostridium botulinum A str. Hall iron chelate uptake ABC transporter solute-binding protein YP_001386896.1 1045924 R 441771 CDS YP_001386897.1 153936385 5399163 complement(1047504..1049264) 1 NC_009698.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone; dihydroxyacetone kinase 1049264 dhaKL 5399163 dhaKL Clostridium botulinum A str. Hall dihydroxyacetone kinase YP_001386897.1 1047504 R 441771 CDS YP_001386898.1 153937776 5400295 complement(1049275..1050405) 1 NC_009698.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1050405 gldA 5400295 gldA Clostridium botulinum A str. Hall glycerol dehydrogenase YP_001386898.1 1049275 R 441771 CDS YP_001386899.1 153935312 5401379 complement(1050717..1051754) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1051754 5401379 CLC_1031 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386899.1 1050717 R 441771 CDS YP_001386900.1 153934563 5401342 1052132..1052308 1 NC_009698.1 hypothetical protein 1052308 5401342 CLC_1032 Clostridium botulinum A str. Hall hypothetical protein YP_001386900.1 1052132 D 441771 CDS YP_001386901.1 153936459 5400254 1052343..1052807 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1052807 5400254 CLC_1033 Clostridium botulinum A str. Hall acetyltransferase YP_001386901.1 1052343 D 441771 CDS YP_001386902.1 153937256 5398469 1052834..1053277 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1053277 5398469 CLC_1034 Clostridium botulinum A str. Hall acetyltransferase YP_001386902.1 1052834 D 441771 CDS YP_001386903.1 153934582 5399832 1053430..1054023 1 NC_009698.1 identified by match to protein family HMM PF07081; hypothetical protein 1054023 5399832 CLC_1035 Clostridium botulinum A str. Hall hypothetical protein YP_001386903.1 1053430 D 441771 CDS YP_001386904.1 153935525 5399503 1054086..1054289 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1054289 5399503 CLC_1036 Clostridium botulinum A str. Hall hypothetical protein YP_001386904.1 1054086 D 441771 CDS YP_001386905.1 153936954 5398605 1054407..1055252 1 NC_009698.1 identified by match to protein family HMM PF00248; aldo/keto reductase 1055252 5398605 CLC_1037 Clostridium botulinum A str. Hall aldo/keto reductase YP_001386905.1 1054407 D 441771 CDS YP_001386906.1 153937747 5398920 1055353..1055676 1 NC_009698.1 identified by match to protein family HMM PF04993; TfoX domain-containing protein 1055676 5398920 CLC_1038 Clostridium botulinum A str. Hall TfoX domain-containing protein YP_001386906.1 1055353 D 441771 CDS YP_001386907.1 153935094 5400207 1055722..1056576 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1056576 5400207 CLC_1039 Clostridium botulinum A str. Hall acetyltransferase YP_001386907.1 1055722 D 441771 CDS YP_001386908.1 153935835 5401692 1056786..1057100 1 NC_009698.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 1057100 5401692 CLC_1040 Clostridium botulinum A str. Hall PadR family transcriptional regulator YP_001386908.1 1056786 D 441771 CDS YP_001386909.1 153935079 5399725 1057117..1057737 1 NC_009698.1 hypothetical protein 1057737 5399725 CLC_1041 Clostridium botulinum A str. Hall hypothetical protein YP_001386909.1 1057117 D 441771 CDS YP_001386910.1 153935258 5398380 1057872..1058366 1 NC_009698.1 hypothetical protein 1058366 5398380 CLC_1042 Clostridium botulinum A str. Hall hypothetical protein YP_001386910.1 1057872 D 441771 CDS YP_001386911.1 153936235 5399812 complement(1058999..1060006) 1 NC_009698.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 1060006 add 5399812 add Clostridium botulinum A str. Hall adenosine deaminase YP_001386911.1 1058999 R 441771 CDS YP_001386912.1 153936699 5400219 1060910..1063078 1 NC_009698.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 1063078 5400219 CLC_1044 Clostridium botulinum A str. Hall phage infection protein YP_001386912.1 1060910 D 441771 CDS YP_001386913.1 153937754 5399508 1063104..1065263 1 NC_009698.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 1065263 5399508 CLC_1045 Clostridium botulinum A str. Hall phage infection protein YP_001386913.1 1063104 D 441771 CDS YP_001386914.1 153934614 5400445 complement(1065624..1065926) 1 NC_009698.1 hypothetical protein 1065926 5400445 CLC_1046 Clostridium botulinum A str. Hall hypothetical protein YP_001386914.1 1065624 R 441771 CDS YP_001386915.1 153936985 5401704 1066117..1066872 1 NC_009698.1 hypothetical protein 1066872 5401704 CLC_1047 Clostridium botulinum A str. Hall hypothetical protein YP_001386915.1 1066117 D 441771 CDS YP_001386916.1 153936581 5398480 1067116..1069245 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 1069245 recQ 5398480 recQ Clostridium botulinum A str. Hall ATP-dependent DNA helicase RecQ YP_001386916.1 1067116 D 441771 CDS YP_001386917.1 153937313 5401388 1069417..1069848 1 NC_009698.1 identified by match to protein family HMM PF02915; ferritin 1069848 5401388 CLC_1049 Clostridium botulinum A str. Hall ferritin YP_001386917.1 1069417 D 441771 CDS YP_001386918.1 153935753 5399183 complement(1070131..1070676) 1 NC_009698.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 1070676 5399183 CLC_1050 Clostridium botulinum A str. Hall phosphodiesterase YP_001386918.1 1070131 R 441771 CDS YP_001386919.1 153936546 5398938 1071313..1071696 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 1071696 5398938 CLC_1051 Clostridium botulinum A str. Hall response regulator YP_001386919.1 1071313 D 441771 CDS YP_001386920.1 153936815 5399961 1071811..1074285 1 NC_009698.1 identified by match to protein family HMM PF07656; hypothetical protein 1074285 5399961 CLC_1052 Clostridium botulinum A str. Hall hypothetical protein YP_001386920.1 1071811 D 441771 CDS YP_001386921.1 153934809 5400711 1074732..1074947 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1074947 5400711 CLC_1053 Clostridium botulinum A str. Hall hypothetical protein YP_001386921.1 1074732 D 441771 CDS YP_001386922.1 153935285 5401216 1074949..1075767 1 NC_009698.1 hypothetical protein 1075767 5401216 CLC_1054 Clostridium botulinum A str. Hall hypothetical protein YP_001386922.1 1074949 D 441771 CDS YP_001386923.1 153936061 5400463 1075767..1076360 1 NC_009698.1 identified by match to protein family HMM PF04055; anaerobic ribonucleoside-triphosphate reductase activating protein 1076360 5400463 CLC_1055 Clostridium botulinum A str. Hall anaerobic ribonucleoside-triphosphate reductase activating protein YP_001386923.1 1075767 D 441771 CDS YP_001386924.1 153937120 5399862 1076374..1078047 1 NC_009698.1 identified by match to protein family HMM PF00004; ATPase AAA 1078047 5399862 CLC_1056 Clostridium botulinum A str. Hall ATPase AAA YP_001386924.1 1076374 D 441771 CDS YP_001386925.1 153935266 5398638 1078062..1078832 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1078832 5398638 CLC_1057 Clostridium botulinum A str. Hall hypothetical protein YP_001386925.1 1078062 D 441771 CDS YP_001386926.1 153935567 5399005 1079316..1080839 1 NC_009698.1 identified by match to protein family HMM PF02652; match to protein family HMM PF03553; match to protein family HMM TIGR00795; L-lactate permease 1080839 lctP 5399005 lctP Clostridium botulinum A str. Hall L-lactate permease YP_001386926.1 1079316 D 441771 CDS YP_001386927.1 153936364 5401092 1080868..1082142 1 NC_009698.1 hypothetical protein 1082142 5401092 CLC_1059 Clostridium botulinum A str. Hall hypothetical protein YP_001386927.1 1080868 D 441771 CDS YP_001386928.1 153937495 5399677 1082185..1082973 1 NC_009698.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 1082973 5399677 CLC_1060 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit beta/FixA family protein YP_001386928.1 1082185 D 441771 CDS YP_001386929.1 153935659 5398360 1083005..1084207 1 NC_009698.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 1084207 5398360 CLC_1061 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit alpha/FixB family protein YP_001386929.1 1083005 D 441771 CDS YP_001386930.1 153937360 5398743 1084268..1085665 1 NC_009698.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase 1085665 5398743 CLC_1062 Clostridium botulinum A str. Hall glycolate oxidase YP_001386930.1 1084268 D 441771 CDS YP_001386931.1 153936464 5401802 1085934..1086056 1 NC_009698.1 identified by similarity to GB:CAK20204.1; hypothetical protein 1086056 5401802 CLC_1063 Clostridium botulinum A str. Hall hypothetical protein YP_001386931.1 1085934 D 441771 CDS YP_001386932.1 153935895 5399177 1086184..1087092 1 NC_009698.1 lipoprotein 1087092 5399177 CLC_1064 Clostridium botulinum A str. Hall lipoprotein YP_001386932.1 1086184 D 441771 CDS YP_001386933.1 153935001 5401181 1087288..1087758 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1087758 5401181 CLC_1065 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001386933.1 1087288 D 441771 CDS YP_001386934.1 153937044 5399716 1087760..1088305 1 NC_009698.1 identified by match to protein family HMM PF04199; cyclase 1088305 5399716 CLC_1066 Clostridium botulinum A str. Hall cyclase YP_001386934.1 1087760 D 441771 CDS YP_001386935.1 153935845 5400282 complement(1088606..1089790) 1 NC_009698.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1089790 5400282 CLC_1067 Clostridium botulinum A str. Hall aspartate aminotransferase YP_001386935.1 1088606 R 441771 CDS YP_001386936.1 153935080 5399896 complement(1090719..1091297) 1 NC_009698.1 identified by match to protein family HMM PF04199; cyclase 1091297 5399896 CLC_1068 Clostridium botulinum A str. Hall cyclase YP_001386936.1 1090719 R 441771 CDS YP_001386937.1 153934814 5398347 1091456..1091980 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1091980 5398347 CLC_1069 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001386937.1 1091456 D 441771 CDS YP_001386938.1 153936513 5399813 1092283..1093104 1 NC_009698.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445; MerR family transcriptional regulator 1093104 5399813 CLC_1070 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001386938.1 1092283 D 441771 CDS YP_001386939.1 153935620 5400849 1093319..1094017 1 NC_009698.1 identified by match to protein family HMM PF03483; B3/4 domain-containing protein 1094017 5400849 CLC_1071 Clostridium botulinum A str. Hall B3/4 domain-containing protein YP_001386939.1 1093319 D 441771 CDS YP_001386940.1 153936074 5399425 complement(1094282..1095571) 1 NC_009698.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1095571 aspC 5399425 aspC Clostridium botulinum A str. Hall aspartyl-tRNA synthetase YP_001386940.1 1094282 R 441771 CDS YP_001386941.1 153935108 5399266 1096116..1096496 1 NC_009698.1 hypothetical protein 1096496 5399266 CLC_1073 Clostridium botulinum A str. Hall hypothetical protein YP_001386941.1 1096116 D 441771 CDS YP_001386942.1 153934530 5401756 1096656..1097270 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1097270 5401756 CLC_1074 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001386942.1 1096656 D 441771 CDS YP_001386943.1 153937868 5400904 1097286..1097774 1 NC_009698.1 hypothetical protein 1097774 5400904 CLC_1075 Clostridium botulinum A str. Hall hypothetical protein YP_001386943.1 1097286 D 441771 CDS YP_001386944.1 153936490 5400478 complement(1097881..1098570) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254; HAD family hydrolase 1098570 5400478 CLC_1076 Clostridium botulinum A str. Hall HAD family hydrolase YP_001386944.1 1097881 R 441771 CDS YP_001386945.1 153935497 5398836 1098881..1099570 1 NC_009698.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 1099570 5398836 CLC_1077 Clostridium botulinum A str. Hall cyclic nucleotide-binding domain-containing protein YP_001386945.1 1098881 D 441771 CDS YP_001386946.1 153937372 5401822 complement(1099688..1100272) 1 NC_009698.1 identified by match to protein family HMM PF01965; DJ-1/PfpI family protein 1100272 5401822 CLC_1078 Clostridium botulinum A str. Hall DJ-1/PfpI family protein YP_001386946.1 1099688 R 441771 CDS YP_001386947.1 153936210 5399665 1100428..1101321 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1101321 5399665 CLC_1079 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001386947.1 1100428 D 441771 CDS YP_001386948.1 153935665 5400304 1101455..1102213 1 NC_009698.1 hypothetical protein 1102213 5400304 CLC_1080 Clostridium botulinum A str. Hall hypothetical protein YP_001386948.1 1101455 D 441771 CDS YP_008472683.1 532643395 16691477 1102758..1102976 1 NC_009698.1 ferrous iron transport protein A 1102976 FeoA 16691477 FeoA Clostridium botulinum A str. Hall ferrous iron transport protein A YP_008472683.1 1102758 D 441771 CDS YP_008472684.1 532643396 16691478 1102993..1103214 1 NC_009698.1 ferrous iron transport protein A 1103214 FeoA 16691478 FeoA Clostridium botulinum A str. Hall ferrous iron transport protein A YP_008472684.1 1102993 D 441771 CDS YP_001386949.1 153936643 5399590 1103246..1105402 1 NC_009698.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 1105402 feoB-2 5399590 feoB-2 Clostridium botulinum A str. Hall ferrous iron transport protein B YP_001386949.1 1103246 D 441771 CDS YP_001386950.1 153936346 5398890 1105423..1105569 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1105569 5398890 CLC_1083 Clostridium botulinum A str. Hall hypothetical protein YP_001386950.1 1105423 D 441771 CDS YP_001386951.1 153935534 5398625 complement(1105964..1106401) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1106401 5398625 CLC_1084 Clostridium botulinum A str. Hall acetyltransferase YP_001386951.1 1105964 R 441771 CDS YP_001386953.1 153935737 5398775 1106868..1107668 1 NC_009698.1 identified by match to protein family HMM PF02557; D-alanyl-D-alanine carboxypeptidase 1107668 5398775 CLC_1086 Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001386953.1 1106868 D 441771 CDS YP_001386954.1 153935209 5401797 1107967..1108194 1 NC_009698.1 identified by match to protein family HMM TIGR03090; small acid-soluble spore protein Tlp 1108194 tlp 5401797 tlp Clostridium botulinum A str. Hall small acid-soluble spore protein Tlp YP_001386954.1 1107967 D 441771 CDS YP_001386955.1 153937242 5398857 1108412..1109098 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1109098 5398857 CLC_1088 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386955.1 1108412 D 441771 CDS YP_001386956.1 153936711 5398249 1109099..1110454 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1110454 5398249 CLC_1089 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386956.1 1109099 D 441771 CDS YP_001386957.1 153935926 5399792 1110989..1112248 1 NC_009698.1 identified by match to protein family HMM PF00067; cytochrome P450 1112248 5399792 CLC_1090 Clostridium botulinum A str. Hall cytochrome P450 YP_001386957.1 1110989 D 441771 CDS YP_001386958.1 153937556 5399025 complement(1112388..1114196) 1 NC_009698.1 identified by match to protein family HMM PF00403; heavy metal-binding domain-containing protein 1114196 5399025 CLC_1091 Clostridium botulinum A str. Hall heavy metal-binding domain-containing protein YP_001386958.1 1112388 R 441771 CDS YP_001386959.1 153936824 5399939 1114733..1114969 1 NC_009698.1 hypothetical protein 1114969 5399939 CLC_1092 Clostridium botulinum A str. Hall hypothetical protein YP_001386959.1 1114733 D 441771 CDS YP_001386960.1 153935682 5399800 1115239..1115940 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1115940 5399800 CLC_1093 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386960.1 1115239 D 441771 CDS YP_001386961.1 153934883 5399993 1115940..1117346 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1117346 5399993 CLC_1094 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386961.1 1115940 D 441771 CDS YP_001386962.1 153937164 5398715 complement(1117686..1118372) 1 NC_009698.1 hypothetical protein 1118372 5398715 CLC_1095 Clostridium botulinum A str. Hall hypothetical protein YP_001386962.1 1117686 R 441771 CDS YP_001386963.1 153937695 5401087 complement(1118608..1119366) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1119366 5401087 CLC_1096 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386963.1 1118608 R 441771 CDS YP_001386964.1 153937390 5401004 1119612..1120565 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 1120565 5401004 CLC_1097 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386964.1 1119612 D 441771 CDS YP_001386965.1 153935784 5399397 1120555..1121505 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 1121505 5399397 CLC_1098 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001386965.1 1120555 D 441771 CDS YP_001386966.1 153936739 5400174 1121502..1122257 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1122257 5400174 CLC_1099 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001386966.1 1121502 D 441771 CDS YP_001386967.1 153936959 5400538 1122331..1123275 1 NC_009698.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1123275 5400538 CLC_1100 Clostridium botulinum A str. Hall iron ABC transporter substrate-binding protein YP_001386967.1 1122331 D 441771 CDS YP_001386968.1 153935880 5400913 1123477..1124478 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1124478 5400913 CLC_1101 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001386968.1 1123477 D 441771 CDS YP_001386969.1 153936893 5398252 1124993..1126795 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1126795 5398252 CLC_1102 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001386969.1 1124993 D 441771 CDS YP_001386970.1 153937116 5400811 1126797..1128512 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF02463; ABC transport ATP-binding protein/permease 1128512 5400811 CLC_1103 Clostridium botulinum A str. Hall ABC transport ATP-binding protein/permease YP_001386970.1 1126797 D 441771 CDS YP_001386971.1 153934688 5400127 complement(1128717..1130090) 1 NC_009698.1 sensor histidine kinase 1130090 5400127 CLC_1104 Clostridium botulinum A str. Hall sensor histidine kinase YP_001386971.1 1128717 R 441771 CDS YP_001386972.1 153936493 5400485 complement(1130093..1130800) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 1130800 5400485 CLC_1105 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001386972.1 1130093 R 441771 CDS YP_001386973.1 153935095 5399435 complement(1130888..1131763) 1 NC_009698.1 hypothetical protein 1131763 5399435 CLC_1106 Clostridium botulinum A str. Hall hypothetical protein YP_001386973.1 1130888 R 441771 CDS YP_001386974.1 153935818 5401825 complement(1132002..1132433) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 1132433 5401825 CLC_1107 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001386974.1 1132002 R 441771 CDS YP_001386975.1 153936807 5399726 1132856..1136017 1 NC_009698.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451; BNR/Asp-box repeat-containing protein 1136017 5399726 CLC_1108 Clostridium botulinum A str. Hall BNR/Asp-box repeat-containing protein YP_001386975.1 1132856 D 441771 CDS YP_001386976.1 153936862 5398816 1136205..1137704 1 NC_009698.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839; extracellular exochitinase 1137704 5398816 CLC_1109 Clostridium botulinum A str. Hall extracellular exochitinase YP_001386976.1 1136205 D 441771 CDS YP_001386977.1 153937849 5398826 1137885..1138034 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1138034 5398826 CLC_1110 Clostridium botulinum A str. Hall hypothetical protein YP_001386977.1 1137885 D 441771 CDS YP_001386978.1 153935757 5398676 1138031..1140073 1 NC_009698.1 identified by match to protein family HMM PF03190; hypothetical protein 1140073 5398676 CLC_1111 Clostridium botulinum A str. Hall hypothetical protein YP_001386978.1 1138031 D 441771 CDS YP_001386979.1 153935096 5398794 1140397..1141392 1 NC_009698.1 identified by match to protein family HMM PF06081; hypothetical protein 1141392 5398794 CLC_1112 Clostridium botulinum A str. Hall hypothetical protein YP_001386979.1 1140397 D 441771 CDS YP_001386980.1 153934828 5400145 1141557..1142141 1 NC_009698.1 hypothetical protein 1142141 5400145 CLC_1113 Clostridium botulinum A str. Hall hypothetical protein YP_001386980.1 1141557 D 441771 CDS YP_001386981.1 153937531 5399727 complement(1142454..1143155) 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1143155 5399727 CLC_1114 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001386981.1 1142454 R 441771 CDS YP_001386982.1 153936250 5398813 complement(1143271..1144077) 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 1144077 5398813 CLC_1115 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001386982.1 1143271 R 441771 CDS YP_001386983.1 153935518 5398306 complement(1144461..1146380) 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 1146380 5398306 CLC_1116 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001386983.1 1144461 R 441771 CDS YP_001386984.1 153936777 5399119 1147018..1148232 1 NC_009698.1 identified by match to protein family HMM PF07670; hypothetical protein 1148232 5399119 CLC_1117 Clostridium botulinum A str. Hall hypothetical protein YP_001386984.1 1147018 D 441771 CDS YP_001386985.1 153935834 5401461 1148607..1148957 1 NC_009698.1 identified by match to protein family HMM PF03960; ArsC family protein 1148957 5401461 CLC_1118 Clostridium botulinum A str. Hall ArsC family protein YP_001386985.1 1148607 D 441771 CDS YP_001386986.1 153935283 5399918 1149175..1150068 1 NC_009698.1 radical SAM domain-containing protein 1150068 5399918 CLC_1119 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001386986.1 1149175 D 441771 CDS YP_001386987.1 153937785 5398379 1150276..1151694 1 NC_009698.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; FAD-dependent oxidoreductase 1151694 5398379 CLC_1120 Clostridium botulinum A str. Hall FAD-dependent oxidoreductase YP_001386987.1 1150276 D 441771 CDS YP_001386988.1 153937076 5398460 1151751..1153007 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1153007 5398460 CLC_1121 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001386988.1 1151751 D 441771 CDS YP_001386989.1 153936394 5400750 1153010..1153378 1 NC_009698.1 identified by match to protein family HMM PF07892; hypothetical protein 1153378 5400750 CLC_1122 Clostridium botulinum A str. Hall hypothetical protein YP_001386989.1 1153010 D 441771 CDS YP_001386990.1 153935559 5400691 1153467..1154804 1 NC_009698.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881; glycerol-3-phosphate transporter 1154804 glpT 5400691 glpT Clostridium botulinum A str. Hall glycerol-3-phosphate transporter YP_001386990.1 1153467 D 441771 CDS YP_001386991.1 153934799 5398521 1155386..1157077 1 NC_009698.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1157077 argS 5398521 argS Clostridium botulinum A str. Hall arginyl-tRNA synthetase YP_001386991.1 1155386 D 441771 CDS YP_001386992.1 153937159 5400569 1157419..1157532 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1157532 5400569 CLC_1125 Clostridium botulinum A str. Hall hypothetical protein YP_001386992.1 1157419 D 441771 CDS YP_001386993.1 153936400 5400677 1157522..1158652 1 NC_009698.1 associated with arginine deiminase pathway genes; probably functions in arginine catabolism; transaminase 1158652 5400677 CLC_1126 Clostridium botulinum A str. Hall transaminase YP_001386993.1 1157522 D 441771 CDS YP_001386994.1 153935635 5399692 1158791..1159171 1 NC_009698.1 identified by match to protein family HMM PF00571; hypothetical protein 1159171 5399692 CLC_1127 Clostridium botulinum A str. Hall hypothetical protein YP_001386994.1 1158791 D 441771 CDS YP_001386995.1 153934791 5398967 complement(1159379..1159537) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1159537 5398967 CLC_1128 Clostridium botulinum A str. Hall hypothetical protein YP_001386995.1 1159379 R 441771 CDS YP_001386996.1 153937571 5400519 complement(1159563..1161326) 1 NC_009698.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; match to protein family HMM TIGR00650; ferrous iron transport protein B 1161326 feoB-3 5400519 feoB-3 Clostridium botulinum A str. Hall ferrous iron transport protein B YP_001386996.1 1159563 R 441771 CDS YP_001386997.1 153936788 5400044 complement(1161341..1161562) 1 NC_009698.1 identified by match to protein family HMM PF04023; ferrous ion transport protein A 1161562 feoA-2 5400044 feoA-2 Clostridium botulinum A str. Hall ferrous ion transport protein A YP_001386997.1 1161341 R 441771 CDS YP_001386998.1 153936879 5401299 1161888..1162283 1 NC_009698.1 identified by match to protein family HMM PF07238; hypothetical protein 1162283 5401299 CLC_1131 Clostridium botulinum A str. Hall hypothetical protein YP_001386998.1 1161888 D 441771 CDS YP_001386999.1 153935763 5398959 1162496..1163221 1 NC_009698.1 identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; haloacid dehalogenase 1163221 5398959 CLC_1132 Clostridium botulinum A str. Hall haloacid dehalogenase YP_001386999.1 1162496 D 441771 CDS YP_001387001.1 153936747 5398450 1163665..1165257 1 NC_009698.1 identified by match to protein family HMM PF02839; glycosyl hydrolase 1165257 5398450 CLC_1134 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001387001.1 1163665 D 441771 CDS YP_001387003.1 153935513 5398545 1166413..1167369 1 NC_009698.1 identified by match to protein family HMM PF00005; methionine ABC transporter ATP-binding protein 1167369 5398545 CLC_1136 Clostridium botulinum A str. Hall methionine ABC transporter ATP-binding protein YP_001387003.1 1166413 D 441771 CDS YP_001387004.1 153936798 5399308 1167371..1168012 1 NC_009698.1 identified by match to protein family HMM PF00528; methionine ABC transporter permease 1168012 5399308 CLC_1137 Clostridium botulinum A str. Hall methionine ABC transporter permease YP_001387004.1 1167371 D 441771 CDS YP_001387005.1 153935701 5400160 1168067..1168879 1 NC_009698.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1168879 5400160 CLC_1138 Clostridium botulinum A str. Hall NLPA family lipoprotein YP_001387005.1 1168067 D 441771 CDS YP_001387006.1 153934723 5400139 1169068..1169880 1 NC_009698.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1169880 5400139 CLC_1139 Clostridium botulinum A str. Hall NLPA family lipoprotein YP_001387006.1 1169068 D 441771 CDS YP_001387007.1 153937320 5398408 1170108..1171274 1 NC_009698.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1171274 5398408 CLC_1140 Clostridium botulinum A str. Hall amidohydrolase YP_001387007.1 1170108 D 441771 CDS YP_001387009.1 153937757 5399519 1171846..1172475 1 NC_009698.1 hypothetical protein 1172475 5399519 CLC_1142 Clostridium botulinum A str. Hall hypothetical protein YP_001387009.1 1171846 D 441771 CDS YP_001387010.1 153935000 5399088 1172981..1173673 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1173673 5399088 CLC_1143 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387010.1 1172981 D 441771 CDS YP_001387011.1 153935932 5401596 1173918..1174781 1 NC_009698.1 identified by match to protein family HMM PF02588; hypothetical protein 1174781 5401596 CLC_1144 Clostridium botulinum A str. Hall hypothetical protein YP_001387011.1 1173918 D 441771 CDS YP_001387012.1 153936308 5400281 1174990..1175202 1 NC_009698.1 hypothetical protein 1175202 5400281 CLC_1145 Clostridium botulinum A str. Hall hypothetical protein YP_001387012.1 1174990 D 441771 CDS YP_001387013.1 153937156 5401372 complement(1175460..1176917) 1 NC_009698.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1176917 gltX 5401372 gltX Clostridium botulinum A str. Hall glutamyl-tRNA synthetase YP_001387013.1 1175460 R 441771 CDS YP_001387014.1 153934889 5400200 1177342..1178358 1 NC_009698.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 1178358 gap-2 5400200 gap-2 Clostridium botulinum A str. Hall glyceraldehyde-3-phosphate dehydrogenase, type I YP_001387014.1 1177342 D 441771 CDS YP_001387015.1 153935549 5400049 complement(1178603..1180111) 1 NC_009698.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 1180111 5400049 CLC_1148 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001387015.1 1178603 R 441771 CDS YP_001387016.1 153935892 5399744 1180477..1180626 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1180626 5399744 CLC_1149 Clostridium botulinum A str. Hall hypothetical protein YP_001387016.1 1180477 D 441771 CDS YP_001387017.1 153936617 5401158 1180769..1181413 1 NC_009698.1 identified by match to protein family HMM PF01966; HD domain-containing protein 1181413 5401158 CLC_1150 Clostridium botulinum A str. Hall HD domain-containing protein YP_001387017.1 1180769 D 441771 CDS YP_001387018.1 153937232 5399087 1181469..1182839 1 NC_009698.1 identified by match to protein family HMM PF00171; aldehyde dehydrogenase 1182839 5399087 CLC_1151 Clostridium botulinum A str. Hall aldehyde dehydrogenase YP_001387018.1 1181469 D 441771 CDS YP_001387019.1 153936087 5401230 complement(1182922..1184319) 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1184319 5401230 CLC_1152 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001387019.1 1182922 R 441771 CDS YP_001387020.1 153935580 5400548 complement(1184915..1186291) 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1186291 5400548 CLC_1153 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001387020.1 1184915 R 441771 CDS YP_001387021.1 153935082 5399711 1186729..1187166 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1187166 5399711 CLC_1154 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001387021.1 1186729 D 441771 CDS YP_001387022.1 153937174 5398416 1187184..1188551 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797; MATE efflux family protein 1188551 5398416 CLC_1155 Clostridium botulinum A str. Hall MATE efflux family protein YP_001387022.1 1187184 D 441771 CDS YP_001387023.1 153936602 5399815 1188970..1189515 1 NC_009698.1 hypothetical protein 1189515 5399815 CLC_1156 Clostridium botulinum A str. Hall hypothetical protein YP_001387023.1 1188970 D 441771 CDS YP_001387024.1 153936366 5398614 1189614..1190591 1 NC_009698.1 hypothetical protein 1190591 5398614 CLC_1157 Clostridium botulinum A str. Hall hypothetical protein YP_001387024.1 1189614 D 441771 CDS YP_001387025.1 153937082 5401079 1191398..1192636 1 NC_009698.1 ABC transporter substrate-binding protein 1192636 5401079 CLC_1158 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001387025.1 1191398 D 441771 CDS YP_001387026.1 153935226 5398901 1192638..1193504 1 NC_009698.1 identified by match to protein family HMM PF00528; ABC transporter permease 1193504 5398901 CLC_1159 Clostridium botulinum A str. Hall ABC transporter permease YP_001387026.1 1192638 D 441771 CDS YP_001387027.1 153936005 5398961 1193527..1194333 1 NC_009698.1 identified by match to protein family HMM PF00528; ABC transporter permease 1194333 5398961 CLC_1160 Clostridium botulinum A str. Hall ABC transporter permease YP_001387027.1 1193527 D 441771 CDS YP_001387028.1 153935677 5398578 1194345..1195364 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1195364 5398578 CLC_1161 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387028.1 1194345 D 441771 CDS YP_001387029.1 153936489 5400106 1195667..1196626 1 NC_009698.1 hypothetical protein 1196626 5400106 CLC_1162 Clostridium botulinum A str. Hall hypothetical protein YP_001387029.1 1195667 D 441771 CDS YP_001387030.1 153936736 5399219 1196730..1197281 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1197281 5399219 CLC_1163 Clostridium botulinum A str. Hall acetyltransferase YP_001387030.1 1196730 D 441771 CDS YP_001387031.1 153937516 5399629 1197291..1197626 1 NC_009698.1 hypothetical protein 1197626 5399629 CLC_1164 Clostridium botulinum A str. Hall hypothetical protein YP_001387031.1 1197291 D 441771 CDS YP_001387032.1 153936003 5400910 1197702..1197980 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1197980 5400910 CLC_1165 Clostridium botulinum A str. Hall hypothetical protein YP_001387032.1 1197702 D 441771 CDS YP_001387033.2 258676991 5401565 1197981..1198577 1 NC_009698.1 identified by match to protein family HMM PF03956; hypothetical protein 1198577 5401565 CLC_1166 Clostridium botulinum A str. Hall hypothetical protein YP_001387033.2 1197981 D 441771 CDS YP_001387034.1 153936603 5400104 1198865..1199419 1 NC_009698.1 identified by match to protein family HMM PF00132; maltose transacetylase 1199419 maa 5400104 maa Clostridium botulinum A str. Hall maltose transacetylase YP_001387034.1 1198865 D 441771 CDS YP_001387035.1 153935394 5401523 complement(1200479..1201462) 1 NC_009698.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; birA bifunctional protein 1201462 birA 5401523 birA Clostridium botulinum A str. Hall birA bifunctional protein YP_001387035.1 1200479 R 441771 CDS YP_001387036.1 153934732 5401080 1201626..1201829 1 NC_009698.1 heavy metal-binding protein 1201829 5401080 CLC_1169 Clostridium botulinum A str. Hall heavy metal-binding protein YP_001387036.1 1201626 D 441771 CDS YP_001387037.1 153937408 5398433 1202104..1202541 1 NC_009698.1 identified by match to protein family HMM PF00571; hypothetical protein 1202541 5398433 CLC_1170 Clostridium botulinum A str. Hall hypothetical protein YP_001387037.1 1202104 D 441771 CDS YP_001387038.1 153936373 5400094 1202701..1204134 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1204134 5400094 CLC_1171 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387038.1 1202701 D 441771 CDS YP_001387039.1 153936932 5401126 complement(1204246..1204371) 1 NC_009698.1 hypothetical protein 1204371 5401126 CLC_1172 Clostridium botulinum A str. Hall hypothetical protein YP_001387039.1 1204246 R 441771 CDS YP_001387040.1 153935848 5400533 1205000..1205779 1 NC_009698.1 hypothetical protein 1205779 5400533 CLC_1173 Clostridium botulinum A str. Hall hypothetical protein YP_001387040.1 1205000 D 441771 CDS YP_001387041.1 153937522 5401146 1206280..1207614 1 NC_009698.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1207614 mgtE 5401146 mgtE Clostridium botulinum A str. Hall magnesium transporter YP_001387041.1 1206280 D 441771 CDS YP_001387042.1 153936752 5401039 1208617..1209690 1 NC_009698.1 identified by match to protein family HMM PF00266; class V aminotransferase 1209690 5401039 CLC_1175 Clostridium botulinum A str. Hall class V aminotransferase YP_001387042.1 1208617 D 441771 CDS YP_001387043.1 153935586 5401553 1209918..1210862 1 NC_009698.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-3-phosphoglycerate dehydrogenase 1210862 serA 5401553 serA Clostridium botulinum A str. Hall D-3-phosphoglycerate dehydrogenase YP_001387043.1 1209918 D 441771 CDS YP_001387044.1 153934844 5398495 1210840..1212162 1 NC_009698.1 identified by match to protein family HMM PF06245; hypothetical protein 1212162 5398495 CLC_1177 Clostridium botulinum A str. Hall hypothetical protein YP_001387044.1 1210840 D 441771 CDS YP_001387045.1 153936507 5399947 1212762..1213952 1 NC_009698.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin domain-containing protein 1213952 5399947 CLC_1178 Clostridium botulinum A str. Hall metallo-beta-lactamase/flavodoxin domain-containing protein YP_001387045.1 1212762 D 441771 CDS YP_001387046.1 153935359 5399911 1214111..1218400 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 1218400 5399911 CLC_1179 Clostridium botulinum A str. Hall CoA-substrate-specific enzyme activase YP_001387046.1 1214111 D 441771 CDS YP_001387047.1 153934602 5398507 complement(1218474..1219988) 1 NC_009698.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 1219988 5398507 CLC_1180 Clostridium botulinum A str. Hall choline/carnitine/betaine transporter YP_001387047.1 1218474 R 441771 CDS YP_001387048.1 153937265 5401467 1220347..1220973 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02080; GntR family transcriptional regulator 1220973 5401467 CLC_1181 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387048.1 1220347 D 441771 CDS YP_001387049.1 153935069 5401242 1221084..1221584 1 NC_009698.1 hypothetical protein 1221584 5401242 CLC_1182 Clostridium botulinum A str. Hall hypothetical protein YP_001387049.1 1221084 D 441771 CDS YP_001387050.1 153935821 5398665 1221883..1222443 1 NC_009698.1 identified by match to protein family HMM PF00857; pyrazinamidase/nicotinamidase 1222443 5398665 CLC_1183 Clostridium botulinum A str. Hall pyrazinamidase/nicotinamidase YP_001387050.1 1221883 D 441771 CDS YP_001387051.1 153936567 5400121 1222601..1222912 1 NC_009698.1 identified by match to protein family HMM PF00581; phage shock protein 1222912 5400121 CLC_1184 Clostridium botulinum A str. Hall phage shock protein YP_001387051.1 1222601 D 441771 CDS YP_001387052.1 153937545 5398819 1222988..1223452 1 NC_009698.1 hypothetical protein 1223452 5398819 CLC_1185 Clostridium botulinum A str. Hall hypothetical protein YP_001387052.1 1222988 D 441771 CDS YP_001387053.1 153937213 5401730 1223729..1223929 1 NC_009698.1 hypothetical protein 1223929 5401730 CLC_1186 Clostridium botulinum A str. Hall hypothetical protein YP_001387053.1 1223729 D 441771 CDS YP_001387054.1 153936992 5399378 1224106..1225017 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1225017 5399378 CLC_1187 Clostridium botulinum A str. Hall hypothetical protein YP_001387054.1 1224106 D 441771 CDS YP_001387055.1 153935777 5399899 1225178..1225750 1 NC_009698.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 1225750 xpt-2 5399899 xpt-2 Clostridium botulinum A str. Hall xanthine phosphoribosyltransferase YP_001387055.1 1225178 D 441771 CDS YP_001387056.1 153935040 5399721 1226048..1226629 1 NC_009698.1 hypothetical protein 1226629 5399721 CLC_1189 Clostridium botulinum A str. Hall hypothetical protein YP_001387056.1 1226048 D 441771 CDS YP_001387057.1 153937399 5401259 1226938..1228320 1 NC_009698.1 identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 1228320 5401259 CLC_1190 Clostridium botulinum A str. Hall thiosulfate sulfurtransferase YP_001387057.1 1226938 D 441771 CDS YP_001387058.1 153935565 5400983 1228516..1228938 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1228938 5400983 CLC_1191 Clostridium botulinum A str. Hall hypothetical protein YP_001387058.1 1228516 D 441771 CDS YP_001387059.1 153936965 5401433 1229288..1230388 1 NC_009698.1 identified by match to protein family HMM PF01594; transporter 1230388 5401433 CLC_1192 Clostridium botulinum A str. Hall transporter YP_001387059.1 1229288 D 441771 CDS YP_001387060.1 153937096 5401386 1230568..1230897 1 NC_009698.1 identified by match to protein family HMM PF03819; MazG family protein 1230897 5401386 CLC_1193 Clostridium botulinum A str. Hall MazG family protein YP_001387060.1 1230568 D 441771 CDS YP_001387061.1 153937605 5398284 1231034..1232773 1 NC_009698.1 hypothetical protein 1232773 5398284 CLC_1194 Clostridium botulinum A str. Hall hypothetical protein YP_001387061.1 1231034 D 441771 CDS YP_001387062.1 153936701 5400152 1233544..1233684 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1233684 5400152 CLC_1195 Clostridium botulinum A str. Hall hypothetical protein YP_001387062.1 1233544 D 441771 CDS YP_001387063.1 153936082 5400471 1233866..1235065 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1235065 5400471 CLC_1196 Clostridium botulinum A str. Hall hypothetical protein YP_001387063.1 1233866 D 441771 CDS YP_001387064.1 153935109 5399109 1235456..1236502 1 NC_009698.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 1236502 5399109 CLC_1197 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001387064.1 1235456 D 441771 CDS YP_001387065.1 153937128 5400212 1236504..1238192 1 NC_009698.1 identified by match to protein family HMM PF00528; ABC transporter permease 1238192 5400212 CLC_1198 Clostridium botulinum A str. Hall ABC transporter permease YP_001387065.1 1236504 D 441771 CDS YP_001387066.1 153936170 5400745 1238155..1239090 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1239090 5400745 CLC_1199 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387066.1 1238155 D 441771 CDS YP_001387067.1 153935613 5399905 complement(1239155..1239949) 1 NC_009698.1 hypothetical protein 1239949 5399905 CLC_1200 Clostridium botulinum A str. Hall hypothetical protein YP_001387067.1 1239155 R 441771 CDS YP_001387068.1 153936445 5400189 1240253..1241419 1 NC_009698.1 hypothetical protein 1241419 5400189 CLC_1201 Clostridium botulinum A str. Hall hypothetical protein YP_001387068.1 1240253 D 441771 CDS YP_001387069.1 153935687 5400457 1241818..1242981 1 NC_009698.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1242981 rpsA 5400457 rpsA Clostridium botulinum A str. Hall 30S ribosomal protein S1 YP_001387069.1 1241818 D 441771 CDS YP_001387070.1 153934782 5398781 1243164..1243583 1 NC_009698.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase 1243583 5398781 CLC_1203 Clostridium botulinum A str. Hall thioesterase YP_001387070.1 1243164 D 441771 CDS YP_001387071.1 153937210 5400805 1243755..1244171 1 NC_009698.1 hypothetical protein 1244171 5400805 CLC_1204 Clostridium botulinum A str. Hall hypothetical protein YP_001387071.1 1243755 D 441771 CDS YP_001387072.1 153936109 5400742 1245040..1246047 1 NC_009698.1 identified by match to protein family HMM PF04392; ABC transporter substrate-binding protein 1246047 5400742 CLC_1205 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001387072.1 1245040 D 441771 CDS YP_001387073.1 153935136 5400408 1246047..1246952 1 NC_009698.1 identified by match to protein family HMM PF02653; ABC transporter permease 1246952 5400408 CLC_1206 Clostridium botulinum A str. Hall ABC transporter permease YP_001387073.1 1246047 D 441771 CDS YP_001387074.1 153937647 5400832 1246915..1247709 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1247709 5400832 CLC_1207 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387074.1 1246915 D 441771 CDS YP_001387075.1 153935716 5400358 1248039..1248341 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1248341 5400358 CLC_1208 Clostridium botulinum A str. Hall hypothetical protein YP_001387075.1 1248039 D 441771 CDS YP_001387076.1 153936692 5401539 1248774..1250417 1 NC_009698.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1250417 asdA 5401539 asdA Clostridium botulinum A str. Hall aspartate aminotransferase YP_001387076.1 1248774 D 441771 CDS YP_001387077.1 153937700 5400661 complement(1250543..1251424) 1 NC_009698.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; match to protein family HMM PF08449; hypothetical protein 1251424 5400661 CLC_1210 Clostridium botulinum A str. Hall hypothetical protein YP_001387077.1 1250543 R 441771 CDS YP_001387078.1 153934943 5400585 1252007..1253104 1 NC_009698.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08279; PfkB family kinase 1253104 5400585 CLC_1211 Clostridium botulinum A str. Hall PfkB family kinase YP_001387078.1 1252007 D 441771 CDS YP_001387079.1 153937623 5401592 1253098..1254021 1 NC_009698.1 identified by match to protein family HMM PF04227; indigoidine synthase A family protein 1254021 5401592 CLC_1212 Clostridium botulinum A str. Hall indigoidine synthase A family protein YP_001387079.1 1253098 D 441771 CDS YP_001387080.1 153937012 5398402 1254513..1255424 1 NC_009698.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745; 2-dehydropantoate 2-reductase 1255424 panE 5398402 panE Clostridium botulinum A str. Hall 2-dehydropantoate 2-reductase YP_001387080.1 1254513 D 441771 CDS YP_001387081.1 153935473 5398530 1255727..1256359 1 NC_009698.1 identified by match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 1256359 fchA 5398530 fchA Clostridium botulinum A str. Hall methenyltetrahydrofolate cyclohydrolase YP_001387081.1 1255727 D 441771 CDS YP_001387082.1 153934528 5400489 1256359..1257207 1 NC_009698.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase 1257207 folD 5400489 folD Clostridium botulinum A str. Hall methylenetetrahydrofolate dehydrogenase YP_001387082.1 1256359 D 441771 CDS YP_001387083.1 153937441 5398517 1257527..1258321 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 1258321 5398517 CLC_1216 Clostridium botulinum A str. Hall HAD family hydrolase YP_001387083.1 1257527 D 441771 CDS YP_001387084.1 153936504 5399754 complement(1258548..1259054) 1 NC_009698.1 identified by match to protein family HMM PF00583; diamine N-acetyltransferase 1259054 5399754 CLC_1217 Clostridium botulinum A str. Hall diamine N-acetyltransferase YP_001387084.1 1258548 R 441771 CDS YP_001387085.1 153936627 5399438 1259235..1259378 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1259378 5399438 CLC_1218 Clostridium botulinum A str. Hall hypothetical protein YP_001387085.1 1259235 D 441771 CDS YP_001387086.1 153936024 5398504 1259496..1260227 1 NC_009698.1 hypothetical protein 1260227 5398504 CLC_1219 Clostridium botulinum A str. Hall hypothetical protein YP_001387086.1 1259496 D 441771 CDS YP_001387087.1 153935247 5400828 1260347..1261156 1 NC_009698.1 identified by match to protein family HMM PF02535; ZIP family zinc transporter 1261156 5400828 CLC_1220 Clostridium botulinum A str. Hall ZIP family zinc transporter YP_001387087.1 1260347 D 441771 CDS YP_001387088.1 153935743 5398591 1261828..1262265 1 NC_009698.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 1262265 5398591 CLC_1221 Clostridium botulinum A str. Hall rrf2 family protein YP_001387088.1 1261828 D 441771 CDS YP_001387089.1 153936282 5399684 1262594..1263523 1 NC_009698.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 1263523 cysK-2 5399684 cysK-2 Clostridium botulinum A str. Hall cysteine synthase A YP_001387089.1 1262594 D 441771 CDS YP_001387090.1 153936492 5399825 1263510..1264178 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1264178 5399825 CLC_1223 Clostridium botulinum A str. Hall His/Glu/Gln/Arg/opine ABC transporter permease YP_001387090.1 1263510 D 441771 CDS YP_001387091.1 153937472 5401101 1264213..1265037 1 NC_009698.1 identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 1265037 5401101 CLC_1224 Clostridium botulinum A str. Hall polar amino acid ABC transporter amino acid-binding protein YP_001387091.1 1264213 D 441771 CDS YP_001387092.1 153935219 5401824 1265138..1266268 1 NC_009698.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfhydrase 1266268 iscS-1 5401824 iscS-1 Clostridium botulinum A str. Hall cysteine desulfhydrase YP_001387092.1 1265138 D 441771 CDS YP_001387093.1 153935920 5398418 1266340..1267140 1 NC_009698.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268; hypothetical protein 1267140 5398418 CLC_1226 Clostridium botulinum A str. Hall hypothetical protein YP_001387093.1 1266340 D 441771 CDS YP_001387094.1 153936101 5400419 1267295..1267423 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1267423 5400419 CLC_1227 Clostridium botulinum A str. Hall hypothetical protein YP_001387094.1 1267295 D 441771 CDS YP_001387095.1 153936775 5399107 1267539..1268609 1 NC_009698.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1268609 mnmA 5399107 mnmA Clostridium botulinum A str. Hall tRNA-specific 2-thiouridylase MnmA YP_001387095.1 1267539 D 441771 CDS YP_001387096.1 153934594 5399487 1268949..1269668 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 1269668 5399487 CLC_1229 Clostridium botulinum A str. Hall LytTr family DNA-binding response regulator YP_001387096.1 1268949 D 441771 CDS YP_001387097.1 153935364 5399916 1269665..1271008 1 NC_009698.1 identified by match to protein family HMM PF02518; sensor histidine kinase 1271008 5399916 CLC_1230 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387097.1 1269665 D 441771 CDS YP_001387098.1 153937709 5399153 1271381..1272304 1 NC_009698.1 identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein BcrA 1272304 bcrA 5399153 bcrA Clostridium botulinum A str. Hall bacitracin ABC transporter ATP-binding protein BcrA YP_001387098.1 1271381 D 441771 CDS YP_001387099.1 153936311 5400274 1272297..1273037 1 NC_009698.1 hypothetical protein 1273037 5400274 CLC_1232 Clostridium botulinum A str. Hall hypothetical protein YP_001387099.1 1272297 D 441771 CDS YP_001387100.1 153935916 5401679 1273640..1275526 1 NC_009698.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 1275526 5401679 CLC_1233 Clostridium botulinum A str. Hall glycerophosphoryl diester phosphodiesterase YP_001387100.1 1273640 D 441771 CDS YP_001387101.1 153934958 5400203 1275873..1276040 1 NC_009698.1 hypothetical protein 1276040 5400203 CLC_1234 Clostridium botulinum A str. Hall hypothetical protein YP_001387101.1 1275873 D 441771 CDS YP_001387102.1 153936760 5400504 complement(1276080..1279598) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin oxidoreductase 1279598 5400504 CLC_1235 Clostridium botulinum A str. Hall pyruvate ferredoxin oxidoreductase YP_001387102.1 1276080 R 441771 CDS YP_001387103.1 153937490 5398369 1279901..1280521 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1280521 5398369 CLC_1236 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001387103.1 1279901 D 441771 CDS YP_001387104.1 153934524 5400062 1280527..1281774 1 NC_009698.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1281774 5400062 CLC_1237 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001387104.1 1280527 D 441771 CDS YP_001387105.1 153936146 5399872 1282075..1283550 1 NC_009698.1 identified by match to protein family HMM PF02696; hypothetical protein 1283550 5399872 CLC_1238 Clostridium botulinum A str. Hall hypothetical protein YP_001387105.1 1282075 D 441771 CDS YP_001387106.1 153936435 5400633 1284061..1285794 1 NC_009698.1 identified by match to protein family HMM PF01593; amine oxidase 1285794 5400633 CLC_1239 Clostridium botulinum A str. Hall amine oxidase YP_001387106.1 1284061 D 441771 CDS YP_001387107.1 153937228 5398557 complement(1285839..1286729) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1286729 5398557 CLC_1240 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387107.1 1285839 R 441771 CDS YP_001387108.1 153937027 5400544 1286929..1287654 1 NC_009698.1 hypothetical protein 1287654 5400544 CLC_1241 Clostridium botulinum A str. Hall hypothetical protein YP_001387108.1 1286929 D 441771 CDS YP_001387109.1 153937084 5398875 1287668..1288996 1 NC_009698.1 identified by match to protein family HMM PF02055; O-glycosyl hydrolase, family protein 1288996 5398875 CLC_1242 Clostridium botulinum A str. Hall O-glycosyl hydrolase, family protein YP_001387109.1 1287668 D 441771 CDS YP_001387110.1 153937808 5398964 1289060..1290001 1 NC_009698.1 identified by match to protein family HMM PF00480; ROK family protein 1290001 5398964 CLC_1243 Clostridium botulinum A str. Hall ROK family protein YP_001387110.1 1289060 D 441771 CDS YP_001387111.1 153937264 5399551 1290004..1291449 1 NC_009698.1 identified by match to protein family HMM PF00232; glycosyl hydrolase 1291449 5399551 CLC_1244 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001387111.1 1290004 D 441771 CDS YP_001387112.1 153936515 5398664 1292120..1293748 1 NC_009698.1 identified by match to protein family HMM PF00686; match to protein family HMM PF01373; beta-amylase 1293748 amyB 5398664 amyB Clostridium botulinum A str. Hall beta-amylase YP_001387112.1 1292120 D 441771 CDS YP_001387113.1 153936237 5400881 1294517..1295719 1 NC_009698.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1295719 tyrS-1 5400881 tyrS-1 Clostridium botulinum A str. Hall tyrosyl-tRNA synthetase YP_001387113.1 1294517 D 441771 CDS YP_001387114.1 153935488 5399510 1296006..1296377 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1296377 5399510 CLC_1247 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387114.1 1296006 D 441771 CDS YP_001387115.1 153934817 5398954 1296370..1297242 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1297242 5398954 CLC_1248 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387115.1 1296370 D 441771 CDS YP_001387116.1 153937506 5399886 1297243..1297989 1 NC_009698.1 hypothetical protein 1297989 5399886 CLC_1249 Clostridium botulinum A str. Hall hypothetical protein YP_001387116.1 1297243 D 441771 CDS YP_001387117.1 153935769 5400328 complement(1298123..1298491) 1 NC_009698.1 hypothetical protein 1298491 5400328 CLC_1250 Clostridium botulinum A str. Hall hypothetical protein YP_001387117.1 1298123 R 441771 CDS YP_001387118.1 153936977 5398608 1298838..1299755 1 NC_009698.1 hypothetical protein 1299755 5398608 CLC_1251 Clostridium botulinum A str. Hall hypothetical protein YP_001387118.1 1298838 D 441771 CDS YP_001387119.1 153936122 5400614 1299944..1302655 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1302655 5400614 CLC_1252 Clostridium botulinum A str. Hall hypothetical protein YP_001387119.1 1299944 D 441771 CDS YP_001387120.1 153935085 5399736 1302733..1304247 1 NC_009698.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476; match to protein family HMM PF08239; glycosyl hydrolase 1304247 5399736 CLC_1253 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001387120.1 1302733 D 441771 CDS YP_001387121.1 153937787 5400058 1304421..1305680 1 NC_009698.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1305680 5400058 CLC_1254 Clostridium botulinum A str. Hall sensory box-containing diguanylate cyclase YP_001387121.1 1304421 D 441771 CDS YP_001387122.1 153936988 5400752 1306080..1306754 1 NC_009698.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; L-serine dehydratase, iron-sulfur-dependent subunit beta 1306754 sdhB 5400752 sdhB Clostridium botulinum A str. Hall L-serine dehydratase, iron-sulfur-dependent subunit beta YP_001387122.1 1306080 D 441771 CDS YP_001387123.1 153935421 5401391 1306767..1307657 1 NC_009698.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1307657 sdhA 5401391 sdhA Clostridium botulinum A str. Hall L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_001387123.1 1306767 D 441771 CDS YP_001387124.1 153934607 5401251 1308081..1308290 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1308290 5401251 CLC_1258 Clostridium botulinum A str. Hall hypothetical protein YP_001387124.1 1308081 D 441771 CDS YP_001387125.1 153934588 5401223 complement(1308449..1308592) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1308592 5401223 CLC_1259 Clostridium botulinum A str. Hall hypothetical protein YP_001387125.1 1308449 R 441771 CDS YP_001387126.1 153937467 5401317 1308864..1309448 1 NC_009698.1 hypothetical protein 1309448 5401317 CLC_1260 Clostridium botulinum A str. Hall hypothetical protein YP_001387126.1 1308864 D 441771 CDS YP_001387127.1 153935826 5399065 complement(1309470..1310438) 1 NC_009698.1 identified by match to protein family HMM PF01244; dipeptidase 1310438 5399065 CLC_1261 Clostridium botulinum A str. Hall dipeptidase YP_001387127.1 1309470 R 441771 CDS YP_001387128.1 153935628 5400315 complement(1310818..1311510) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1311510 5400315 CLC_1262 Clostridium botulinum A str. Hall hypothetical protein YP_001387128.1 1310818 R 441771 CDS YP_001387129.1 153935886 5398452 complement(1311617..1312900) 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 1312900 5398452 CLC_1263 Clostridium botulinum A str. Hall ABC transporter permease YP_001387129.1 1311617 R 441771 CDS YP_001387130.1 153936677 5399557 complement(1312902..1313717) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1313717 5399557 CLC_1264 Clostridium botulinum A str. Hall hypothetical protein YP_001387130.1 1312902 R 441771 CDS YP_001387131.1 153937045 5399533 complement(1313754..1314428) 1 NC_009698.1 identified by match to protein family HMM PF00005; oligopeptide ABC transporter ATP-binding protein 1314428 5399533 CLC_1265 Clostridium botulinum A str. Hall oligopeptide ABC transporter ATP-binding protein YP_001387131.1 1313754 R 441771 CDS YP_001387132.1 153935216 5400521 complement(1314601..1315449) 1 NC_009698.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1315449 5400521 CLC_1266 Clostridium botulinum A str. Hall oligopeptide ABC transporter permease YP_001387132.1 1314601 R 441771 CDS YP_001387133.1 153936678 5400416 complement(1315455..1316408) 1 NC_009698.1 identified by match to protein family HMM PF00528; oligopeptide ABC transporter permease 1316408 5400416 CLC_1267 Clostridium botulinum A str. Hall oligopeptide ABC transporter permease YP_001387133.1 1315455 R 441771 CDS YP_001387134.1 153934868 5401475 complement(1316607..1318205) 1 NC_009698.1 identified by match to protein family HMM PF00496; oligopeptide ABC transporter oligopeptide-binding protein 1318205 5401475 CLC_1268 Clostridium botulinum A str. Hall oligopeptide ABC transporter oligopeptide-binding protein YP_001387134.1 1316607 R 441771 CDS YP_001387135.1 153935252 5399255 1318497..1318658 1 NC_009698.1 hypothetical protein 1318658 5399255 CLC_1269 Clostridium botulinum A str. Hall hypothetical protein YP_001387135.1 1318497 D 441771 CDS YP_001387136.1 153935998 5401525 1318692..1318964 1 NC_009698.1 spore coat peptide assembly protein CotJB 1318964 cotJB 5401525 cotJB Clostridium botulinum A str. Hall spore coat peptide assembly protein CotJB YP_001387136.1 1318692 D 441771 CDS YP_001387137.1 153936324 5398909 1318995..1319567 1 NC_009698.1 identified by match to protein family HMM PF05067; spore coat peptide assembly protein CotJC 1319567 cotJC 5398909 cotJC Clostridium botulinum A str. Hall spore coat peptide assembly protein CotJC YP_001387137.1 1318995 D 441771 CDS YP_001387138.1 153936423 5400702 1319797..1320816 1 NC_009698.1 hypothetical protein 1320816 5400702 CLC_1272 Clostridium botulinum A str. Hall hypothetical protein YP_001387138.1 1319797 D 441771 CDS YP_001387139.1 153937043 5401049 1320833..1321897 1 NC_009698.1 hypothetical protein 1321897 5401049 CLC_1273 Clostridium botulinum A str. Hall hypothetical protein YP_001387139.1 1320833 D 441771 CDS YP_001387140.1 153934558 5399895 1322545..1323036 1 NC_009698.1 identified by match to protein family HMM PF04525; hypothetical protein 1323036 5399895 CLC_1274 Clostridium botulinum A str. Hall hypothetical protein YP_001387140.1 1322545 D 441771 CDS YP_001387141.1 153935630 5399387 complement(1323274..1323678) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1323678 5399387 CLC_1275 Clostridium botulinum A str. Hall hypothetical protein YP_001387141.1 1323274 R 441771 CDS YP_001387142.1 153937713 5398454 1324025..1324651 1 NC_009698.1 identified by match to protein family HMM PF00692; deoxyuridine 5'-triphosphate nucleotidohydrolase 1324651 dut 5398454 dut Clostridium botulinum A str. Hall deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001387142.1 1324025 D 441771 CDS YP_001387143.1 153936542 5401583 complement(1324705..1324896) 1 NC_009698.1 identified by match to protein family HMM TIGR02861; small acid-soluble spore protein, H-type 1324896 5401583 CLC_1277 Clostridium botulinum A str. Hall small acid-soluble spore protein, H-type YP_001387143.1 1324705 R 441771 CDS YP_001387144.1 153935801 5400566 complement(1325410..1326165) 1 NC_009698.1 hypothetical protein 1326165 5400566 CLC_1278 Clostridium botulinum A str. Hall hypothetical protein YP_001387144.1 1325410 R 441771 CDS YP_001387145.1 153934562 5399921 1326559..1326705 1 NC_009698.1 identified by similarity to GB:ABK61158.1; hypothetical protein 1326705 5399921 CLC_1279 Clostridium botulinum A str. Hall hypothetical protein YP_001387145.1 1326559 D 441771 CDS YP_001387146.1 153937268 5398468 complement(1326823..1327356) 1 NC_009698.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 1327356 5398468 CLC_1280 Clostridium botulinum A str. Hall DNA-binding protein YP_001387146.1 1326823 R 441771 CDS YP_001387147.1 153937809 5400439 1327780..1328829 1 NC_009698.1 transcriptional regulator 1328829 5400439 CLC_1281 Clostridium botulinum A str. Hall transcriptional regulator YP_001387147.1 1327780 D 441771 CDS YP_001387149.1 153934981 5399747 1329263..1329850 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1329850 5399747 CLC_1283 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001387149.1 1329263 D 441771 CDS YP_001387150.1 153937446 5399565 complement(1329884..1330096) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1330096 5399565 CLC_1284 Clostridium botulinum A str. Hall hypothetical protein YP_001387150.1 1329884 R 441771 CDS YP_001387151.1 153935891 5401405 1330146..1330367 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1330367 5401405 CLC_1285 Clostridium botulinum A str. Hall hypothetical protein YP_001387151.1 1330146 D 441771 CDS YP_001387152.1 153935086 5399086 1330379..1330612 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1330612 5399086 CLC_1286 Clostridium botulinum A str. Hall hypothetical protein YP_001387152.1 1330379 D 441771 CDS YP_001387153.1 153934482 5400059 complement(1331118..1332554) 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1332554 5400059 CLC_1287 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001387153.1 1331118 R 441771 CDS YP_001387154.1 153936943 5399602 1333724..1334032 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1334032 5399602 CLC_1288 Clostridium botulinum A str. Hall hypothetical protein YP_001387154.1 1333724 D 441771 CDS YP_001387155.1 153935495 5401606 1334694..1334897 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 1334897 5401606 CLC_1289 Clostridium botulinum A str. Hall DNA-binding protein YP_001387155.1 1334694 D 441771 CDS YP_001387156.1 153934625 5398831 1335777..1336034 1 NC_009698.1 hypothetical protein 1336034 5398831 CLC_1290 Clostridium botulinum A str. Hall hypothetical protein YP_001387156.1 1335777 D 441771 CDS YP_001387157.1 153937487 5399749 1336318..1337064 1 NC_009698.1 lipoprotein 1337064 5399749 CLC_1291 Clostridium botulinum A str. Hall lipoprotein YP_001387157.1 1336318 D 441771 CDS YP_001387158.1 153937512 5400885 1337383..1337610 1 NC_009698.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196; rubredoxin 1337610 5400885 CLC_1292 Clostridium botulinum A str. Hall rubredoxin YP_001387158.1 1337383 D 441771 CDS YP_001387159.1 153935649 5401111 complement(1337642..1339102) 1 NC_009698.1 identified by match to protein family HMM PF00171; glyceraldehyde-3-phosphate dehydrogenase 1339102 5401111 CLC_1293 Clostridium botulinum A str. Hall glyceraldehyde-3-phosphate dehydrogenase YP_001387159.1 1337642 R 441771 CDS YP_001387160.1 153936452 5401561 complement(1339142..1340083) 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; thioredoxin reductase 1340083 5401561 CLC_1294 Clostridium botulinum A str. Hall thioredoxin reductase YP_001387160.1 1339142 R 441771 CDS YP_001387161.1 153937173 5401611 1340880..1341257 1 NC_009698.1 GrdX protein 1341257 grdX 5401611 grdX Clostridium botulinum A str. Hall GrdX protein YP_001387161.1 1340880 D 441771 CDS YP_001387162.1 153934490 5400604 1341348..1342634 1 NC_009698.1 identified by match to protein family HMM PF09338; glycine reductase complex component B, alpha and beta subunits 1342634 grdE 5400604 grdE Clostridium botulinum A str. Hall glycine reductase complex component B, alpha and beta subunits YP_001387162.1 1341348 D 441771 CDS YP_001387163.1 153936840 5400083 1342667..1343968 1 NC_009698.1 Selenoprotein. identified by match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918; glycine reductase, selenoprotein B 1343968 grdB 5400083 grdB Clostridium botulinum A str. Hall glycine reductase, selenoprotein B YP_001387163.1 1342667 D 441771 CDS YP_001387164.1 153936173 5399076 1344119..1345060 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 1345060 trxB 5399076 trxB Clostridium botulinum A str. Hall thioredoxin-disulfide reductase YP_001387164.1 1344119 D 441771 CDS YP_001387165.1 153936746 5401187 1345094..1345414 1 NC_009698.1 identified by match to protein family HMM PF00085; thioredoxin family protein 1345414 5401187 CLC_1299 Clostridium botulinum A str. Hall thioredoxin family protein YP_001387165.1 1345094 D 441771 CDS YP_001387167.1 153937685 5398544 1346071..1347609 1 NC_009698.1 identified by match to protein family HMM PF08545; glycine reductase complex component C subunit beta 1347609 grdC 5398544 grdC Clostridium botulinum A str. Hall glycine reductase complex component C subunit beta YP_001387167.1 1346071 D 441771 CDS YP_001387168.1 153936710 5400746 1347625..1348791 1 NC_009698.1 identified by match to protein family HMM PF02504; glycine reductase complex component C subunit alpha 1348791 grdD 5400746 grdD Clostridium botulinum A str. Hall glycine reductase complex component C subunit alpha YP_001387168.1 1347625 D 441771 CDS YP_001387169.1 153934829 5401709 1349218..1349829 1 NC_009698.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 1349829 5401709 CLC_1303 Clostridium botulinum A str. Hall 3-methyladenine DNA glycosylase YP_001387169.1 1349218 D 441771 CDS YP_001387170.1 153937273 5399024 1349895..1352120 1 NC_009698.1 identified by match to protein family HMM PF07669; restriction endonuclease 1352120 5399024 CLC_1304 Clostridium botulinum A str. Hall restriction endonuclease YP_001387170.1 1349895 D 441771 CDS YP_001387171.1 153936336 5398814 1352556..1353767 1 NC_009698.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1353767 mtnK 5398814 mtnK Clostridium botulinum A str. Hall methylthioribose kinase YP_001387171.1 1352556 D 441771 CDS YP_001387172.1 153936000 5400433 1353907..1354956 1 NC_009698.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1354956 mtnA 5400433 mtnA Clostridium botulinum A str. Hall methylthioribose-1-phosphate isomerase YP_001387172.1 1353907 D 441771 CDS YP_001387173.1 153934939 5401398 1354980..1355090 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1355090 5401398 CLC_1307 Clostridium botulinum A str. Hall hypothetical protein YP_001387173.1 1354980 D 441771 CDS YP_001387174.1 153936345 5398911 1355107..1355754 1 NC_009698.1 identified by match to protein family HMM PF00596; aldolase 1355754 5398911 CLC_1308 Clostridium botulinum A str. Hall aldolase YP_001387174.1 1355107 D 441771 CDS YP_001387175.1 153935577 5398343 1355798..1355938 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1355938 5398343 CLC_1309 Clostridium botulinum A str. Hall hypothetical protein YP_001387175.1 1355798 D 441771 CDS YP_001387176.1 153934797 5399647 1355928..1356722 1 NC_009698.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1356722 5399647 CLC_1310 Clostridium botulinum A str. Hall DeoR family transcriptional regulator YP_001387176.1 1355928 D 441771 CDS YP_001387177.1 153935407 5398413 1357029..1357388 1 NC_009698.1 hypothetical protein 1357388 5398413 CLC_1311 Clostridium botulinum A str. Hall hypothetical protein YP_001387177.1 1357029 D 441771 CDS YP_001387178.1 153936584 5400567 complement(1357742..1358617) 1 NC_009698.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1358617 5400567 CLC_1312 Clostridium botulinum A str. Hall cation efflux family protein YP_001387178.1 1357742 R 441771 CDS YP_001387179.1 153937325 5399463 1358865..1359593 1 NC_009698.1 identified by match to protein family HMM PF04239; hypothetical protein 1359593 5399463 CLC_1313 Clostridium botulinum A str. Hall hypothetical protein YP_001387179.1 1358865 D 441771 CDS YP_001387180.1 153936978 5398334 1359755..1360120 1 NC_009698.1 hypothetical protein 1360120 5398334 CLC_1314 Clostridium botulinum A str. Hall hypothetical protein YP_001387180.1 1359755 D 441771 CDS YP_001387181.1 153937727 5401641 1360262..1360600 1 NC_009698.1 hypothetical protein 1360600 5401641 CLC_1315 Clostridium botulinum A str. Hall hypothetical protein YP_001387181.1 1360262 D 441771 CDS YP_001387182.1 153934637 5400615 1360597..1361070 1 NC_009698.1 hypothetical protein 1361070 5400615 CLC_1316 Clostridium botulinum A str. Hall hypothetical protein YP_001387182.1 1360597 D 441771 CDS YP_001387183.1 153935418 5401648 1361453..1361818 1 NC_009698.1 identified by similarity to GB:AAZ70622.1; hypothetical protein 1361818 5401648 CLC_1317 Clostridium botulinum A str. Hall hypothetical protein YP_001387183.1 1361453 D 441771 CDS YP_001387184.1 153935654 5399335 1361887..1362594 1 NC_009698.1 hypothetical protein 1362594 5399335 CLC_1318 Clostridium botulinum A str. Hall hypothetical protein YP_001387184.1 1361887 D 441771 CDS YP_001387185.1 153936413 5400934 complement(1362665..1362835) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1362835 5400934 CLC_1319 Clostridium botulinum A str. Hall hypothetical protein YP_001387185.1 1362665 R 441771 CDS YP_001387186.1 153935041 5398711 complement(1363216..1363449) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1363449 5398711 CLC_1320 Clostridium botulinum A str. Hall hypothetical protein YP_001387186.1 1363216 R 441771 CDS YP_001387187.1 153934985 5399028 1364637..1364933 1 NC_009698.1 hypothetical protein 1364933 5399028 CLC_1321 Clostridium botulinum A str. Hall hypothetical protein YP_001387187.1 1364637 D 441771 CDS YP_001387188.1 153936554 5400984 1364961..1365257 1 NC_009698.1 hypothetical protein 1365257 5400984 CLC_1322 Clostridium botulinum A str. Hall hypothetical protein YP_001387188.1 1364961 D 441771 CDS YP_001387189.1 153935710 5398309 1365314..1367611 1 NC_009698.1 molybdenum cofactor-binding protein; participates in purine salvage; xanthine dehydrogenase subunit XdhA 1367611 5398309 CLC_1323 Clostridium botulinum A str. Hall xanthine dehydrogenase subunit XdhA YP_001387189.1 1365314 D 441771 CDS YP_001387190.1 153937798 5400327 1367625..1368509 1 NC_009698.1 FAD-binding subunit; with XdhA and XdhC participates in purine salvage; xanthine dehydrogenase subunit XdhB 1368509 5400327 CLC_1324 Clostridium botulinum A str. Hall xanthine dehydrogenase subunit XdhB YP_001387190.1 1367625 D 441771 CDS YP_001387191.1 153936870 5401027 1368541..1369014 1 NC_009698.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur binding subunit 1369014 5401027 CLC_1325 Clostridium botulinum A str. Hall xanthine dehydrogenase, iron-sulfur binding subunit YP_001387191.1 1368541 D 441771 CDS YP_001387192.1 153935940 5398274 1369130..1369603 1 NC_009698.1 identified by match to protein family HMM PF00383; guanine deaminase 1369603 5398274 CLC_1326 Clostridium botulinum A str. Hall guanine deaminase YP_001387192.1 1369130 D 441771 CDS YP_001387193.1 153934966 5400268 1369993..1372188 1 NC_009698.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1372188 topB 5400268 topB Clostridium botulinum A str. Hall DNA topoisomerase III YP_001387193.1 1369993 D 441771 CDS YP_001387194.1 153937402 5398570 1372500..1373105 1 NC_009698.1 identified by match to protein family HMM PF02659; hypothetical protein 1373105 5398570 CLC_1328 Clostridium botulinum A str. Hall hypothetical protein YP_001387194.1 1372500 D 441771 CDS YP_001387195.1 153936206 5398299 1373171..1373407 1 NC_009698.1 hypothetical protein 1373407 5398299 CLC_1329 Clostridium botulinum A str. Hall hypothetical protein YP_001387195.1 1373171 D 441771 CDS YP_001387197.1 153937673 5398801 1374134..1374787 1 NC_009698.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 1374787 5398801 CLC_1331 Clostridium botulinum A str. Hall translaldolase YP_001387197.1 1374134 D 441771 CDS YP_001387198.1 153934631 5398540 1375186..1376850 1 NC_009698.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolising metallo-beta-lactamase 1376850 5398540 CLC_1332 Clostridium botulinum A str. Hall RNA-metabolising metallo-beta-lactamase YP_001387198.1 1375186 D 441771 CDS YP_001387199.1 153935722 5400029 1377155..1378507 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 1378507 5400029 CLC_1333 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001387199.1 1377155 D 441771 CDS YP_001387200.1 153937208 5399545 1378822..1379667 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1379667 5399545 CLC_1334 Clostridium botulinum A str. Hall diguanylate cyclase YP_001387200.1 1378822 D 441771 CDS YP_001387201.1 153937831 5399051 1379687..1381312 1 NC_009698.1 STE-like transcription factor domain-containing protein 1381312 5399051 CLC_1335 Clostridium botulinum A str. Hall STE-like transcription factor domain-containing protein YP_001387201.1 1379687 D 441771 CDS YP_001387202.1 153934917 5400406 1381318..1382580 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1382580 5400406 CLC_1336 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001387202.1 1381318 D 441771 CDS YP_001387203.1 153935852 5400558 1382861..1384957 1 NC_009698.1 cellulose synthase domain-containing protein 1384957 5400558 CLC_1337 Clostridium botulinum A str. Hall cellulose synthase domain-containing protein YP_001387203.1 1382861 D 441771 CDS YP_001387204.1 153935788 5398759 1385374..1386468 1 NC_009698.1 hypothetical protein 1386468 5398759 CLC_1338 Clostridium botulinum A str. Hall hypothetical protein YP_001387204.1 1385374 D 441771 CDS YP_001387205.1 153936952 5401043 1386696..1386860 1 NC_009698.1 hypothetical protein 1386860 5401043 CLC_1339 Clostridium botulinum A str. Hall hypothetical protein YP_001387205.1 1386696 D 441771 CDS YP_001387206.1 153937702 5400542 1387195..1387998 1 NC_009698.1 hypothetical protein 1387998 5400542 CLC_1340 Clostridium botulinum A str. Hall hypothetical protein YP_001387206.1 1387195 D 441771 CDS YP_001387207.1 153936265 5400205 1388274..1388540 1 NC_009698.1 identified by match to protein family HMM PF02583; hypothetical protein 1388540 5400205 CLC_1341 Clostridium botulinum A str. Hall hypothetical protein YP_001387207.1 1388274 D 441771 CDS YP_001387208.1 153935481 5401594 1388577..1391012 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 1391012 5401594 CLC_1342 Clostridium botulinum A str. Hall copper-translocating P-type ATPase YP_001387208.1 1388577 D 441771 CDS YP_001387209.1 153937837 5401267 1391135..1391350 1 NC_009698.1 identified by match to protein family HMM PF00403; copper chaperone CopZ 1391350 copZ 5401267 copZ Clostridium botulinum A str. Hall copper chaperone CopZ YP_001387209.1 1391135 D 441771 CDS YP_001387210.1 153937819 5400395 1391732..1394104 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type 1394104 5400395 CLC_1344 Clostridium botulinum A str. Hall cation-transporting ATPase, P-type YP_001387210.1 1391732 D 441771 CDS YP_001387211.1 153936877 5398983 1394582..1396300 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1396300 5398983 CLC_1345 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387211.1 1394582 D 441771 CDS YP_001387212.1 153935437 5400298 1396638..1397432 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 1397432 5400298 CLC_1346 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001387212.1 1396638 D 441771 CDS YP_001387213.1 153934538 5399594 1397596..1397952 1 NC_009698.1 identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor family protein 1397952 5399594 CLC_1347 Clostridium botulinum A str. Hall dinitrogenase iron-molybdenum cofactor family protein YP_001387213.1 1397596 D 441771 CDS YP_001387214.1 153937557 5398651 1398371..1399264 1 NC_009698.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 1399264 5398651 CLC_1348 Clostridium botulinum A str. Hall DegV family protein YP_001387214.1 1398371 D 441771 CDS YP_001387215.1 153937003 5398322 complement(1399301..1399765) 1 NC_009698.1 identified by match to protein family HMM PF01243; 5-nitroimidazole antibiotic resistance protein 1399765 5398322 CLC_1349 Clostridium botulinum A str. Hall 5-nitroimidazole antibiotic resistance protein YP_001387215.1 1399301 R 441771 CDS YP_001387216.1 153935452 5399801 1400078..1400305 1 NC_009698.1 identified by similarity to SP:Q8K9S1; hypothetical protein 1400305 5399801 CLC_1350 Clostridium botulinum A str. Hall hypothetical protein YP_001387216.1 1400078 D 441771 CDS YP_001387217.1 153936353 5399281 1400330..1400758 1 NC_009698.1 identified by match to protein family HMM PF01230; HIT family protein 1400758 5399281 CLC_1351 Clostridium botulinum A str. Hall HIT family protein YP_001387217.1 1400330 D 441771 CDS YP_001387218.1 153935987 5399950 complement(1400914..1401288) 1 NC_009698.1 hypothetical protein 1401288 5399950 CLC_1352 Clostridium botulinum A str. Hall hypothetical protein YP_001387218.1 1400914 R 441771 CDS YP_001387219.1 153935217 5399618 1401581..1402348 1 NC_009698.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750; type IV leader peptidase 1402348 5399618 CLC_1353 Clostridium botulinum A str. Hall type IV leader peptidase YP_001387219.1 1401581 D 441771 CDS YP_001387220.1 153935996 5400967 1402940..1404067 1 NC_009698.1 identified by match to protein family HMM PF07907; hypothetical protein 1404067 5400967 CLC_1354 Clostridium botulinum A str. Hall hypothetical protein YP_001387220.1 1402940 D 441771 CDS YP_001387221.1 153937621 5398907 1406218..1407663 1 NC_009698.1 identified by match to protein family HMM PF02386; Trk system potassium uptake protein TrkH 1407663 trkH 5398907 trkH Clostridium botulinum A str. Hall Trk system potassium uptake protein TrkH YP_001387221.1 1406218 D 441771 CDS YP_001387222.1 153936695 5400077 1408122..1408256 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1408256 5400077 CLC_1357 Clostridium botulinum A str. Hall hypothetical protein YP_001387222.1 1408122 D 441771 CDS YP_001387223.1 153936519 5399999 1408237..1410804 1 NC_009698.1 identified by match to protein family HMM PF00580; match to protein family HMM PF00929; match to protein family HMM TIGR00573; helicase, UvrD/REP/exonuclease 1410804 5399999 CLC_1358 Clostridium botulinum A str. Hall helicase, UvrD/REP/exonuclease YP_001387223.1 1408237 D 441771 CDS YP_001387224.1 153935538 5400588 complement(1412107..1413237) 1 NC_009698.1 identified by match to protein family HMM PF07853; hypothetical protein 1413237 5400588 CLC_1359 Clostridium botulinum A str. Hall hypothetical protein YP_001387224.1 1412107 R 441771 CDS YP_001387225.1 153935203 5401585 complement(1413252..1413626) 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 1413626 5401585 CLC_1360 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387225.1 1413252 R 441771 CDS YP_001387226.1 153936565 5398436 complement(1413968..1414747) 1 NC_009698.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486; cell wall hydrolase 1414747 5398436 CLC_1361 Clostridium botulinum A str. Hall cell wall hydrolase YP_001387226.1 1413968 R 441771 CDS YP_001387227.1 153935313 5401001 1415506..1416093 1 NC_009698.1 identified by match to protein family HMM PF02915; rubrerythrin 1416093 rbr 5401001 rbr Clostridium botulinum A str. Hall rubrerythrin YP_001387227.1 1415506 D 441771 CDS YP_001387228.1 153936020 5399273 1416388..1417842 1 NC_009698.1 identified by match to protein family HMM PF04122; amidase 1417842 5399273 CLC_1363 Clostridium botulinum A str. Hall amidase YP_001387228.1 1416388 D 441771 CDS YP_001387229.1 153937032 5400971 complement(1418015..1420045) 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002; PTS system glucose-specific transporter subunit IIABC 1420045 ptsG 5400971 ptsG Clostridium botulinum A str. Hall PTS system glucose-specific transporter subunit IIABC YP_001387229.1 1418015 R 441771 CDS YP_001387230.1 153935982 5400582 1420497..1421144 1 NC_009698.1 identified by match to protein family HMM PF01255; undecaprenyl pyrophosphate synthetase-like protein 1421144 5400582 CLC_1365 Clostridium botulinum A str. Hall undecaprenyl pyrophosphate synthetase-like protein YP_001387230.1 1420497 D 441771 CDS YP_001387232.1 153937233 5400427 1421531..1422040 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1422040 5400427 CLC_1367 Clostridium botulinum A str. Hall hypothetical protein YP_001387232.1 1421531 D 441771 CDS YP_001387233.1 153936293 5401642 1422335..1422748 1 NC_009698.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; transcriptional regulator 1422748 5401642 CLC_1368 Clostridium botulinum A str. Hall transcriptional regulator YP_001387233.1 1422335 D 441771 CDS YP_001387234.1 153936544 5400655 1422957..1424843 1 NC_009698.1 identified by match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon monoxide dehydrogenase 1424843 5400655 CLC_1369 Clostridium botulinum A str. Hall carbon monoxide dehydrogenase YP_001387234.1 1422957 D 441771 CDS YP_001387235.1 153935516 5401799 1424990..1425433 1 NC_009698.1 identified by match to protein family HMM PF00037; nitrate reductase, iron-sulfur subunit 1425433 5401799 CLC_1370 Clostridium botulinum A str. Hall nitrate reductase, iron-sulfur subunit YP_001387235.1 1424990 D 441771 CDS YP_001387236.1 153935021 5400709 1425632..1426858 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; nitrate reductase, NADH oxidase subunit 1426858 noxA 5400709 noxA Clostridium botulinum A str. Hall nitrate reductase, NADH oxidase subunit YP_001387236.1 1425632 D 441771 CDS YP_001387237.1 153936197 5400163 complement(1426900..1427880) 1 NC_009698.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151; transporter 1427880 5400163 CLC_1372 Clostridium botulinum A str. Hall transporter YP_001387237.1 1426900 R 441771 CDS YP_001387238.1 153935740 5399166 complement(1428262..1428948) 1 NC_009698.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/FNR family transcriptional regulator 1428948 5399166 CLC_1373 Clostridium botulinum A str. Hall Crp/FNR family transcriptional regulator YP_001387238.1 1428262 R 441771 CDS YP_001387239.1 153935453 5398881 1429065..1430264 1 NC_009698.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 1430264 5398881 CLC_1374 Clostridium botulinum A str. Hall major facilitator superfamily protein YP_001387239.1 1429065 D 441771 CDS YP_001387240.1 153934527 5399822 1430567..1431481 1 NC_009698.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1431481 5399822 CLC_1375 Clostridium botulinum A str. Hall iron ABC transporter substrate-binding protein YP_001387240.1 1430567 D 441771 CDS YP_001387241.1 153936945 5399951 1431503..1432501 1 NC_009698.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 1432501 5399951 CLC_1376 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001387241.1 1431503 D 441771 CDS YP_001387242.1 153935978 5399753 1432504..1433265 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1433265 5399753 CLC_1377 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001387242.1 1432504 D 441771 CDS YP_001387243.1 153935945 5400868 complement(1433486..1433821) 1 NC_009698.1 hypothetical protein 1433821 5400868 CLC_1378 Clostridium botulinum A str. Hall hypothetical protein YP_001387243.1 1433486 R 441771 CDS YP_001387244.1 153935168 5401513 complement(1433896..1435173) 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 1435173 5401513 CLC_1379 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001387244.1 1433896 R 441771 CDS YP_001387246.1 153936738 5400334 1436704..1437612 1 NC_009698.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 1437612 murQ 5400334 murQ Clostridium botulinum A str. Hall N-acetylmuramic acid 6-phosphate etherase YP_001387246.1 1436704 D 441771 CDS YP_001387247.1 153937762 5398419 1437725..1439080 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; PTS system transporter subunit IIBC 1439080 5398419 CLC_1382 Clostridium botulinum A str. Hall PTS system transporter subunit IIBC YP_001387247.1 1437725 D 441771 CDS YP_001387248.1 153935081 5400912 1439504..1440580 1 NC_009698.1 identified by match to protein family HMM PF05913; hypothetical protein 1440580 5400912 CLC_1383 Clostridium botulinum A str. Hall hypothetical protein YP_001387248.1 1439504 D 441771 CDS YP_001387249.1 153936287 5401601 1440912..1441520 1 NC_009698.1 identified by match to protein family HMM PF06475; hypothetical protein 1441520 5401601 CLC_1384 Clostridium botulinum A str. Hall hypothetical protein YP_001387249.1 1440912 D 441771 CDS YP_001387250.1 153937025 5399814 1441803..1442444 1 NC_009698.1 identified by match to protein family HMM PF06555; hypothetical protein 1442444 5399814 CLC_1385 Clostridium botulinum A str. Hall hypothetical protein YP_001387250.1 1441803 D 441771 CDS YP_001387251.1 153934735 5401106 1442750..1444621 1 NC_009698.1 hypothetical protein 1444621 5401106 CLC_1386 Clostridium botulinum A str. Hall hypothetical protein YP_001387251.1 1442750 D 441771 CDS YP_001387252.1 153935464 5398873 1444674..1445912 1 NC_009698.1 cell-surface protein 1445912 5398873 CLC_1387 Clostridium botulinum A str. Hall cell-surface protein YP_001387252.1 1444674 D 441771 CDS YP_001387253.1 153936744 5401774 1445912..1446454 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1446454 5401774 CLC_1388 Clostridium botulinum A str. Hall hypothetical protein YP_001387253.1 1445912 D 441771 CDS YP_001387254.1 153937554 5401064 complement(1446624..1446896) 1 NC_009698.1 hypothetical protein 1446896 5401064 CLC_1389 Clostridium botulinum A str. Hall hypothetical protein YP_001387254.1 1446624 R 441771 CDS YP_001387255.1 153935230 5398542 1447400..1449118 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1449118 5398542 CLC_1390 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387255.1 1447400 D 441771 CDS YP_001387256.1 153935958 5400592 1449576..1451165 1 NC_009698.1 identified by match to protein family HMM PF00496; peptide/opine/nickel uptake ABC transporter substrate-binding protein 1451165 5400592 CLC_1391 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter substrate-binding protein YP_001387256.1 1449576 D 441771 CDS YP_001387257.1 153935012 5399833 1451162..1452118 1 NC_009698.1 identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1452118 5399833 CLC_1392 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter permease YP_001387257.1 1451162 D 441771 CDS YP_001387258.1 153935756 5399034 1452127..1452927 1 NC_009698.1 identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1452927 5399034 CLC_1393 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter permease YP_001387258.1 1452127 D 441771 CDS YP_001387259.1 153934742 5400369 1453026..1453820 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 1453820 5400369 CLC_1394 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter ATP-binding protein YP_001387259.1 1453026 D 441771 CDS YP_001387260.1 153935366 5400144 1453814..1454626 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide/opine/nickel uptake ABC transporter ATP-binding protein 1454626 5400144 CLC_1395 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter ATP-binding protein YP_001387260.1 1453814 D 441771 CDS YP_001387261.1 153937041 5399537 1455070..1455582 1 NC_009698.1 lipoprotein 1455582 5399537 CLC_1396 Clostridium botulinum A str. Hall lipoprotein YP_001387261.1 1455070 D 441771 CDS YP_001387262.1 153937791 5400276 complement(1455875..1456663) 1 NC_009698.1 identified by match to protein family HMM PF00950; manganese/zinc/iron chelate ABC transporter permease 1456663 5400276 CLC_1397 Clostridium botulinum A str. Hall manganese/zinc/iron chelate ABC transporter permease YP_001387262.1 1455875 R 441771 CDS YP_001387263.1 153936019 5399893 complement(1456663..1457316) 1 NC_009698.1 identified by match to protein family HMM PF00005; manganese/zinc/iron chelate ABC transporter ATP-binding protein 1457316 5399893 CLC_1398 Clostridium botulinum A str. Hall manganese/zinc/iron chelate ABC transporter ATP-binding protein YP_001387263.1 1456663 R 441771 CDS YP_001387264.1 153936776 5401285 1457537..1458475 1 NC_009698.1 identified by match to protein family HMM PF01297; manganese/zinc/iron chelate ABC transporter substrate-binding protein 1458475 5401285 CLC_1399 Clostridium botulinum A str. Hall manganese/zinc/iron chelate ABC transporter substrate-binding protein YP_001387264.1 1457537 D 441771 CDS YP_001387265.1 153936539 5400581 complement(1458589..1459080) 1 NC_009698.1 hypothetical protein 1459080 5400581 CLC_1400 Clostridium botulinum A str. Hall hypothetical protein YP_001387265.1 1458589 R 441771 CDS YP_001387266.1 153937286 5399917 1459683..1461449 1 NC_009698.1 identified by match to protein family HMM PF00271; helicase 1461449 5399917 CLC_1401 Clostridium botulinum A str. Hall helicase YP_001387266.1 1459683 D 441771 CDS YP_001387267.1 153937202 5400563 1461584..1462132 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1462132 5400563 CLC_1402 Clostridium botulinum A str. Hall diguanylate cyclase YP_001387267.1 1461584 D 441771 CDS YP_001387269.2 532643387 5400636 1463106..1464053 1 NC_009698.1 hypothetical protein 1464053 5400636 CLC_1404 Clostridium botulinum A str. Hall hypothetical protein YP_001387269.2 1463106 D 441771 CDS YP_001387270.1 153935138 5401305 1464025..1464786 1 NC_009698.1 identified by match to protein family HMM PF00528; ABC transporter permease 1464786 5401305 CLC_1405 Clostridium botulinum A str. Hall ABC transporter permease YP_001387270.1 1464025 D 441771 CDS YP_001387271.1 153936359 5400650 1464927..1465526 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1465526 5400650 CLC_1406 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387271.1 1464927 D 441771 CDS YP_001387272.1 153935361 5400360 1465805..1466278 1 NC_009698.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1466278 5400360 CLC_1407 Clostridium botulinum A str. Hall FUR family transcriptional regulator YP_001387272.1 1465805 D 441771 CDS YP_001387273.1 153935065 5401838 1466248..1466721 1 NC_009698.1 identified by match to protein family HMM PF02001; hypothetical protein 1466721 5401838 CLC_1408 Clostridium botulinum A str. Hall hypothetical protein YP_001387273.1 1466248 D 441771 CDS YP_001387274.1 153935817 5401469 1466848..1468119 1 NC_009698.1 identified by match to protein family HMM PF00246; match to protein family HMM PF01471; match to protein family HMM PF01476; zinc carboxypeptidase 1468119 5401469 CLC_1409 Clostridium botulinum A str. Hall zinc carboxypeptidase YP_001387274.1 1466848 D 441771 CDS YP_001387276.1 153937352 5399579 1468409..1469449 1 NC_009698.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1469449 rnz 5399579 rnz Clostridium botulinum A str. Hall ribonuclease Z YP_001387276.1 1468409 D 441771 CDS YP_001387277.1 153936076 5398339 1469795..1471114 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 1471114 5398339 CLC_1412 Clostridium botulinum A str. Hall amino acid permease YP_001387277.1 1469795 D 441771 CDS YP_001387278.1 153935292 5400164 1471259..1471636 1 NC_009698.1 identified by match to protein family HMM PF08000; hypothetical protein 1471636 5400164 CLC_1413 Clostridium botulinum A str. Hall hypothetical protein YP_001387278.1 1471259 D 441771 CDS YP_001387279.1 153935091 5400682 1471649..1472806 1 NC_009698.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase 1472806 5400682 CLC_1414 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387279.1 1471649 D 441771 CDS YP_001387280.1 153937750 5399659 1472989..1473642 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; LuxR family transcriptional regulator 1473642 5399659 CLC_1415 Clostridium botulinum A str. Hall LuxR family transcriptional regulator YP_001387280.1 1472989 D 441771 CDS YP_001387281.1 153936437 5400722 1473993..1474931 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1474931 5400722 CLC_1416 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387281.1 1473993 D 441771 CDS YP_001387282.1 153935829 5401695 1475037..1476215 1 NC_009698.1 ABC transporter permease 1476215 5401695 CLC_1417 Clostridium botulinum A str. Hall ABC transporter permease YP_001387282.1 1475037 D 441771 CDS YP_001387283.1 153936178 5399309 1476217..1477317 1 NC_009698.1 identified by match to protein family HMM PF01061; hypothetical protein 1477317 5399309 CLC_1418 Clostridium botulinum A str. Hall hypothetical protein YP_001387283.1 1476217 D 441771 CDS YP_001387284.1 153935653 5398536 1477336..1477554 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1477554 5398536 CLC_1419 Clostridium botulinum A str. Hall hypothetical protein YP_001387284.1 1477336 D 441771 CDS YP_001387285.1 153935322 5401809 complement(1478245..1478796) 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 1478796 5401809 CLC_1420 Clostridium botulinum A str. Hall nitroreductase YP_001387285.1 1478245 R 441771 CDS YP_001387286.1 153937171 5398710 complement(1479354..1479845) 1 NC_009698.1 hypothetical protein 1479845 5398710 CLC_1421 Clostridium botulinum A str. Hall hypothetical protein YP_001387286.1 1479354 R 441771 CDS YP_001387287.1 153936819 5401013 complement(1480013..1480216) 1 NC_009698.1 identified by match to protein family HMM PF00313; major cold shock protein 1480216 5401013 CLC_1422 Clostridium botulinum A str. Hall major cold shock protein YP_001387287.1 1480013 R 441771 CDS YP_001387288.1 153937871 5400081 1480483..1481946 1 NC_009698.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 1481946 pepD-1 5400081 pepD-1 Clostridium botulinum A str. Hall aminoacyl-histidine dipeptidase YP_001387288.1 1480483 D 441771 CDS YP_001387291.1 153934835 5400535 1483294..1484130 1 NC_009698.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1484130 pdxK 5400535 pdxK Clostridium botulinum A str. Hall pyridoxamine kinase YP_001387291.1 1483294 D 441771 CDS YP_001387292.1 153935582 5399318 complement(1484418..1485056) 1 NC_009698.1 identified by match to protein family HMM PF01625; methionine-S-sulfoxide reductase 1485056 5399318 CLC_1427 Clostridium botulinum A str. Hall methionine-S-sulfoxide reductase YP_001387292.1 1484418 R 441771 CDS YP_001387293.1 153935477 5401618 1485606..1486370 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1486370 5401618 CLC_1428 Clostridium botulinum A str. Hall peptide ABC transporter ATP-binding protein YP_001387293.1 1485606 D 441771 CDS YP_001387294.1 153936934 5399943 1486357..1488246 1 NC_009698.1 identified by match to protein family HMM PF02687; peptide ABC transporter permease 1488246 5399943 CLC_1429 Clostridium botulinum A str. Hall peptide ABC transporter permease YP_001387294.1 1486357 D 441771 CDS YP_001387295.1 153937486 5400320 1488419..1488916 1 NC_009698.1 hypothetical protein 1488916 5400320 CLC_1430 Clostridium botulinum A str. Hall hypothetical protein YP_001387295.1 1488419 D 441771 CDS YP_001387296.1 153935268 5399761 1489356..1490057 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1490057 5399761 CLC_1431 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387296.1 1489356 D 441771 CDS YP_001387297.1 153934552 5401110 1490059..1491036 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1491036 5401110 CLC_1432 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387297.1 1490059 D 441771 CDS YP_001387298.1 153935554 5401094 1491095..1491850 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1491850 5401094 CLC_1433 Clostridium botulinum A str. Hall peptide ABC transporter ATP-binding protein YP_001387298.1 1491095 D 441771 CDS YP_001387299.1 153934790 5401493 1491840..1493648 1 NC_009698.1 peptide ABC transporter permease 1493648 5401493 CLC_1434 Clostridium botulinum A str. Hall peptide ABC transporter permease YP_001387299.1 1491840 D 441771 CDS YP_001387300.1 153935721 5399417 1493717..1494439 1 NC_009698.1 hypothetical protein 1494439 5399417 CLC_1435 Clostridium botulinum A str. Hall hypothetical protein YP_001387300.1 1493717 D 441771 CDS YP_001387301.1 153936810 5400043 1494818..1495819 1 NC_009698.1 hypothetical protein 1495819 5400043 CLC_1436 Clostridium botulinum A str. Hall hypothetical protein YP_001387301.1 1494818 D 441771 CDS YP_001387302.1 153937598 5399050 1496203..1497381 1 NC_009698.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 1497381 5399050 CLC_1437 Clostridium botulinum A str. Hall aminotransferase, classes I and II YP_001387302.1 1496203 D 441771 CDS YP_001387303.1 153935113 5400496 1497469..1498134 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1498134 5400496 CLC_1438 Clostridium botulinum A str. Hall His/Glu/Gln/Arg/opine ABC transporter permease YP_001387303.1 1497469 D 441771 CDS YP_001387304.1 153934547 5399846 1498153..1498890 1 NC_009698.1 identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 1498890 5399846 CLC_1439 Clostridium botulinum A str. Hall polar amino acid ABC transporter ATP-binding protein YP_001387304.1 1498153 D 441771 CDS YP_001387305.1 153935760 5400749 1499315..1499533 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 1499533 5400749 CLC_1440 Clostridium botulinum A str. Hall DNA-binding protein YP_001387305.1 1499315 D 441771 CDS YP_001387306.1 153936557 5399276 complement(1499732..1501006) 1 NC_009698.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1501006 5399276 CLC_1441 Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001387306.1 1499732 R 441771 CDS YP_001387307.1 153936683 5398447 1501305..1501928 1 NC_009698.1 identified by match to protein family HMM PF00293; MutT/NUDIX NTP pyrophosphatase 1501928 5398447 CLC_1442 Clostridium botulinum A str. Hall MutT/NUDIX NTP pyrophosphatase YP_001387307.1 1501305 D 441771 CDS YP_001387308.1 153937671 5400364 complement(1501979..1502326) 1 NC_009698.1 hypothetical protein 1502326 5400364 CLC_1443 Clostridium botulinum A str. Hall hypothetical protein YP_001387308.1 1501979 R 441771 CDS YP_001387309.1 153934591 5401480 1502662..1503825 1 NC_009698.1 identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1503825 5401480 CLC_1444 Clostridium botulinum A str. Hall NADH-dependent butanol dehydrogenase YP_001387309.1 1502662 D 441771 CDS YP_001387310.1 153935449 5401672 1504209..1504433 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1504433 5401672 CLC_1445 Clostridium botulinum A str. Hall hypothetical protein YP_001387310.1 1504209 D 441771 CDS YP_001387311.1 153936259 5399150 1504606..1506126 1 NC_009698.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; C4-dicarboxylate transporter 1506126 5399150 CLC_1446 Clostridium botulinum A str. Hall C4-dicarboxylate transporter YP_001387311.1 1504606 D 441771 CDS YP_001387312.1 153937008 5398723 complement(1506265..1507746) 1 NC_009698.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1507746 5398723 CLC_1447 Clostridium botulinum A str. Hall nicotinate phosphoribosyltransferase YP_001387312.1 1506265 R 441771 CDS YP_001387313.1 153936568 5400345 1508203..1509009 1 NC_009698.1 identified by match to protein family HMM PF00497; polar amino acid ABC transporter amino acid-binding protein 1509009 5400345 CLC_1448 Clostridium botulinum A str. Hall polar amino acid ABC transporter amino acid-binding protein YP_001387313.1 1508203 D 441771 CDS YP_001387314.1 153935865 5398738 1509011..1509670 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726; His/Glu/Gln/Arg/opine ABC transporter permease 1509670 5398738 CLC_1449 Clostridium botulinum A str. Hall His/Glu/Gln/Arg/opine ABC transporter permease YP_001387314.1 1509011 D 441771 CDS YP_001387315.1 153935141 5401731 1509801..1510349 1 NC_009698.1 hypothetical protein 1510349 5401731 CLC_1450 Clostridium botulinum A str. Hall hypothetical protein YP_001387315.1 1509801 D 441771 CDS YP_001387316.1 153937834 5401444 1510444..1512456 1 NC_009698.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase PcrA 1512456 5401444 CLC_1451 Clostridium botulinum A str. Hall ATP-dependent DNA helicase PcrA YP_001387316.1 1510444 D 441771 CDS YP_001387317.1 153937103 5401209 1512844..1513227 1 NC_009698.1 hypothetical protein 1513227 5401209 CLC_1452 Clostridium botulinum A str. Hall hypothetical protein YP_001387317.1 1512844 D 441771 CDS YP_001387318.1 153936362 5398980 1513233..1513583 1 NC_009698.1 hypothetical protein 1513583 5398980 CLC_1453 Clostridium botulinum A str. Hall hypothetical protein YP_001387318.1 1513233 D 441771 CDS YP_001387319.1 153935813 5399473 1513715..1513873 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1513873 5399473 CLC_1454 Clostridium botulinum A str. Hall hypothetical protein YP_001387319.1 1513715 D 441771 CDS YP_001387320.1 153935747 5398358 1513983..1514390 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1514390 5398358 CLC_1455 Clostridium botulinum A str. Hall acetyltransferase YP_001387320.1 1513983 D 441771 CDS YP_001387321.1 153937830 5399575 1514552..1515031 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1515031 5399575 CLC_1456 Clostridium botulinum A str. Hall hypothetical protein YP_001387321.1 1514552 D 441771 CDS YP_001387322.1 153936886 5398595 1515123..1515278 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1515278 5398595 CLC_1457 Clostridium botulinum A str. Hall hypothetical protein YP_001387322.1 1515123 D 441771 CDS YP_001387323.1 153935398 5400556 1515554..1515748 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1515748 5400556 CLC_1458 Clostridium botulinum A str. Hall hypothetical protein YP_001387323.1 1515554 D 441771 CDS YP_001387324.1 153934796 5398984 1515972..1516175 1 NC_009698.1 bacteriocin UviB 1516175 uviB 5398984 uviB Clostridium botulinum A str. Hall bacteriocin UviB YP_001387324.1 1515972 D 441771 CDS YP_001387325.1 153936897 5400237 1516168..1516350 1 NC_009698.1 hypothetical protein 1516350 5400237 CLC_1460 Clostridium botulinum A str. Hall hypothetical protein YP_001387325.1 1516168 D 441771 CDS YP_001387326.1 153936376 5399697 1516350..1517177 1 NC_009698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1517177 5399697 CLC_1461 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001387326.1 1516350 D 441771 CDS YP_001387327.1 153937576 5400131 1517545..1517763 1 NC_009698.1 hypothetical protein 1517763 5400131 CLC_1462 Clostridium botulinum A str. Hall hypothetical protein YP_001387327.1 1517545 D 441771 CDS YP_001387328.1 153936800 5400536 1517765..1518070 1 NC_009698.1 identified by match to protein family HMM PF07875; spore coat protein-like protein 1518070 5400536 CLC_1463 Clostridium botulinum A str. Hall spore coat protein-like protein YP_001387328.1 1517765 D 441771 CDS YP_001387329.1 153937553 5399809 1518729..1519706 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1519706 5399809 CLC_1464 Clostridium botulinum A str. Hall hypothetical protein YP_001387329.1 1518729 D 441771 CDS YP_001387330.1 153936821 5400141 1520090..1520488 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1520488 5400141 CLC_1465 Clostridium botulinum A str. Hall hypothetical protein YP_001387330.1 1520090 D 441771 CDS YP_001387331.1 153935591 5400591 1520839..1521141 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1521141 5400591 CLC_1466 Clostridium botulinum A str. Hall hypothetical protein YP_001387331.1 1520839 D 441771 CDS YP_001387332.1 153934786 5399990 1521344..1523572 1 NC_009698.1 identified by match to protein family HMM PF02491; cell division protein FtsA 1523572 5399990 CLC_1467 Clostridium botulinum A str. Hall cell division protein FtsA YP_001387332.1 1521344 D 441771 CDS YP_001387333.1 153935157 5400392 1523792..1524970 1 NC_009698.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase 1524970 5400392 CLC_1468 Clostridium botulinum A str. Hall amidohydrolase YP_001387333.1 1523792 D 441771 CDS YP_001387334.1 153936217 5401419 1525026..1525877 1 NC_009698.1 identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 1525877 5401419 CLC_1469 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001387334.1 1525026 D 441771 CDS YP_001387335.1 153936684 5399777 1526357..1527310 1 NC_009698.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1527310 5399777 CLC_1470 Clostridium botulinum A str. Hall RluA family pseudouridine synthase YP_001387335.1 1526357 D 441771 CDS YP_001387336.1 153936021 5399450 1527342..1528949 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B 1528949 spoVB-1 5399450 spoVB-1 Clostridium botulinum A str. Hall stage V sporulation protein B YP_001387336.1 1527342 D 441771 CDS YP_001387337.1 153937007 5400987 complement(1528986..1530491) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR02900; polysaccharide biosynthesis family protein 1530491 5400987 CLC_1472 Clostridium botulinum A str. Hall polysaccharide biosynthesis family protein YP_001387337.1 1528986 R 441771 CDS YP_001387338.1 153937721 5398588 1530824..1531387 1 NC_009698.1 hypothetical protein 1531387 5398588 CLC_1473 Clostridium botulinum A str. Hall hypothetical protein YP_001387338.1 1530824 D 441771 CDS YP_001387339.1 153934690 5398737 complement(1531408..1531815) 1 NC_009698.1 hypothetical protein 1531815 5398737 CLC_1474 Clostridium botulinum A str. Hall hypothetical protein YP_001387339.1 1531408 R 441771 CDS YP_001387340.1 153935667 5401687 1532914..1534113 1 NC_009698.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 1534113 5401687 CLC_1475 Clostridium botulinum A str. Hall alcohol dehydrogenase YP_001387340.1 1532914 D 441771 CDS YP_001387341.1 153936281 5399783 1534474..1536792 1 NC_009698.1 identified by match to protein family HMM PF05362; ATP-dependent protease 1536792 5399783 CLC_1476 Clostridium botulinum A str. Hall ATP-dependent protease YP_001387341.1 1534474 D 441771 CDS YP_001387342.1 153935262 5399501 complement(1538133..1539860) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1539860 npr-1 5399501 npr-1 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387342.1 1538133 R 441771 CDS YP_001387343.1 153935843 5401584 complement(1539997..1541775) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1541775 npr-2 5401584 npr-2 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387343.1 1539997 R 441771 CDS YP_001387344.1 153936412 5399622 complement(1541891..1543675) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1543675 npr-3 5399622 npr-3 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387344.1 1541891 R 441771 CDS YP_001387345.1 153936914 5398345 complement(1543795..1545579) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1545579 npr-4 5398345 npr-4 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387345.1 1543795 R 441771 CDS YP_001387346.1 153937247 5399027 complement(1545699..1547444) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1547444 npr-5 5399027 npr-5 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387346.1 1545699 R 441771 CDS YP_001387347.1 153934792 5400100 complement(1547478..1549220) 1 NC_009698.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; thermolysin metallopeptidase 1549220 npr-6 5400100 npr-6 Clostridium botulinum A str. Hall thermolysin metallopeptidase YP_001387347.1 1547478 R 441771 CDS YP_001387348.1 153935688 5400514 complement(1549823..1550659) 1 NC_009698.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 1550659 nadC 5400514 nadC Clostridium botulinum A str. Hall nicotinate-nucleotide pyrophosphorylase YP_001387348.1 1549823 R 441771 CDS YP_001387349.1 153937657 5399693 complement(1550640..1551941) 1 NC_009698.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1551941 nadB 5399693 nadB Clostridium botulinum A str. Hall L-aspartate oxidase YP_001387349.1 1550640 R 441771 CDS YP_001387350.1 153935163 5400806 complement(1551944..1552858) 1 NC_009698.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1552858 nadA 5400806 nadA Clostridium botulinum A str. Hall quinolinate synthetase YP_001387350.1 1551944 R 441771 CDS YP_001387351.1 153936166 5401652 1553230..1554156 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1554156 5401652 CLC_1487 Clostridium botulinum A str. Hall hypothetical protein YP_001387351.1 1553230 D 441771 CDS YP_001387352.1 153936260 5399609 complement(1554253..1554891) 1 NC_009698.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1554891 hlyIII 5399609 hlyIII Clostridium botulinum A str. Hall hemolysin III YP_001387352.1 1554253 R 441771 CDS YP_001387353.1 153937204 5401249 complement(1555012..1556109) 1 NC_009698.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1556109 ychF 5401249 ychF Clostridium botulinum A str. Hall GTP-dependent nucleic acid-binding protein EngD YP_001387353.1 1555012 R 441771 CDS YP_001387354.1 153934766 5400346 1556803..1557273 1 NC_009698.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1557273 mraZ 5400346 mraZ Clostridium botulinum A str. Hall cell division protein MraZ YP_001387354.1 1556803 D 441771 CDS YP_001387355.1 153935599 5400638 1557353..1558282 1 NC_009698.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1558282 mraW 5400638 mraW Clostridium botulinum A str. Hall S-adenosyl-methyltransferase MraW YP_001387355.1 1557353 D 441771 CDS YP_001387356.1 153934852 5398554 1558364..1558867 1 NC_009698.1 cell division protein FtsL 1558867 5398554 CLC_1492 Clostridium botulinum A str. Hall cell division protein FtsL YP_001387356.1 1558364 D 441771 CDS YP_001387357.1 153937122 5401449 1558883..1561063 1 NC_009698.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; stage V sporulation protein D 1561063 5401449 CLC_1493 Clostridium botulinum A str. Hall stage V sporulation protein D YP_001387357.1 1558883 D 441771 CDS YP_001387358.1 153936377 5400241 1561293..1562744 1 NC_009698.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1562744 murE 5400241 murE Clostridium botulinum A str. Hall UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001387358.1 1561293 D 441771 CDS YP_001387359.1 153937074 5399007 1562770..1564158 1 NC_009698.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1564158 murF 5399007 murF Clostridium botulinum A str. Hall UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001387359.1 1562770 D 441771 CDS YP_001387360.1 153936331 5400689 1564194..1565147 1 NC_009698.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1565147 mraY 5400689 mraY Clostridium botulinum A str. Hall phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001387360.1 1564194 D 441771 CDS YP_001387361.1 153936059 5401741 1565226..1566338 1 NC_009698.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615; cell cycle protein FtsW 1566338 5401741 CLC_1497 Clostridium botulinum A str. Hall cell cycle protein FtsW YP_001387361.1 1565226 D 441771 CDS YP_001387362.1 153935304 5400785 1566657..1567427 1 NC_009698.1 identified by match to protein family HMM PF08478; cell division protein FtsQ 1567427 5400785 CLC_1498 Clostridium botulinum A str. Hall cell division protein FtsQ YP_001387362.1 1566657 D 441771 CDS YP_001387363.1 153934832 5398733 1567438..1568151 1 NC_009698.1 identified by match to protein family HMM PF05949; hypothetical protein 1568151 5398733 CLC_1499 Clostridium botulinum A str. Hall hypothetical protein YP_001387363.1 1567438 D 441771 CDS YP_001387364.1 153936806 5401615 1568185..1568535 1 NC_009698.1 identified by match to protein family HMM PF06947; small basic protein 1568535 sbp 5401615 sbp Clostridium botulinum A str. Hall small basic protein YP_001387364.1 1568185 D 441771 CDS YP_001387365.1 153934755 5398825 1568536..1569267 1 NC_009698.1 identified by match to protein family HMM PF05949; hypothetical protein 1569267 5398825 CLC_1501 Clostridium botulinum A str. Hall hypothetical protein YP_001387365.1 1568536 D 441771 CDS YP_001387366.1 153937054 5400918 1569360..1570031 1 NC_009698.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1570031 5400918 CLC_1502 Clostridium botulinum A str. Hall hypothetical protein YP_001387366.1 1569360 D 441771 CDS YP_001387367.1 153935552 5398886 1570052..1570504 1 NC_009698.1 identified by match to protein family HMM PF04472; hypothetical protein 1570504 5398886 CLC_1503 Clostridium botulinum A str. Hall hypothetical protein YP_001387367.1 1570052 D 441771 CDS YP_001387368.1 153934763 5399415 1570521..1570796 1 NC_009698.1 identified by match to protein family HMM PF02325; hypothetical protein 1570796 5399415 CLC_1504 Clostridium botulinum A str. Hall hypothetical protein YP_001387368.1 1570521 D 441771 CDS YP_001387369.1 153937536 5398551 1570797..1571567 1 NC_009698.1 hypothetical protein 1571567 5398551 CLC_1505 Clostridium botulinum A str. Hall hypothetical protein YP_001387369.1 1570797 D 441771 CDS YP_001387370.1 153936633 5398997 1571583..1572242 1 NC_009698.1 identified by match to protein family HMM PF05103; cell-division initiation protein DivIVA 1572242 divIVA 5398997 divIVA Clostridium botulinum A str. Hall cell-division initiation protein DivIVA YP_001387370.1 1571583 D 441771 CDS YP_001387371.1 153937167 5399582 1572650..1573738 1 NC_009698.1 identified by match to protein family HMM PF01761; match to protein family HMM TIGR01357; 3-dehydroquinate synthase 1573738 aroB 5399582 aroB Clostridium botulinum A str. Hall 3-dehydroquinate synthase YP_001387371.1 1572650 D 441771 CDS YP_001387372.1 153936180 5401007 1573739..1574431 1 NC_009698.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1574431 mtnN 5401007 mtnN Clostridium botulinum A str. Hall 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_001387372.1 1573739 D 441771 CDS YP_001387373.1 153935685 5400537 1574552..1575352 1 NC_009698.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 1575352 aroF 5400537 aroF Clostridium botulinum A str. Hall 3-deoxy-7-phosphoheptulonate synthase YP_001387373.1 1574552 D 441771 CDS YP_001387374.1 153934776 5399467 1575486..1576814 1 NC_009698.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1576814 aroA 5399467 aroA Clostridium botulinum A str. Hall 3-phosphoshikimate 1-carboxyvinyltransferase YP_001387374.1 1575486 D 441771 CDS YP_001387375.1 153936672 5398718 1577031..1577654 1 NC_009698.1 identified by match to protein family HMM PF01258; match to protein family HMM TIGR02890; RNA polymerase-binding protein DksA 1577654 5398718 CLC_1511 Clostridium botulinum A str. Hall RNA polymerase-binding protein DksA YP_001387375.1 1577031 D 441771 CDS YP_001387376.1 153937656 5399344 1578058..1578501 1 NC_009698.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1578501 lspA 5399344 lspA Clostridium botulinum A str. Hall lipoprotein signal peptidase YP_001387376.1 1578058 D 441771 CDS YP_001387377.1 153935171 5399528 1578505..1579422 1 NC_009698.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1579422 5399528 CLC_1513 Clostridium botulinum A str. Hall RluA family pseudouridine synthase YP_001387377.1 1578505 D 441771 CDS YP_001387378.1 153936107 5401668 1579909..1580445 1 NC_009698.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1580445 pyrR-1 5401668 pyrR-1 Clostridium botulinum A str. Hall bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001387378.1 1579909 D 441771 CDS YP_001387379.1 153937221 5400337 1580489..1581832 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil permease 1581832 5400337 CLC_1515 Clostridium botulinum A str. Hall uracil permease YP_001387379.1 1580489 D 441771 CDS YP_001387380.1 153935156 5400386 1582422..1583183 1 NC_009698.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 1583183 xth 5400386 xth Clostridium botulinum A str. Hall exodeoxyribonuclease III YP_001387380.1 1582422 D 441771 CDS YP_001387381.1 153935401 5399409 1583406..1584548 1 NC_009698.1 identified by match to protein family HMM PF01170; methyltransferase 1584548 5399409 CLC_1517 Clostridium botulinum A str. Hall methyltransferase YP_001387381.1 1583406 D 441771 CDS YP_001387382.1 153936599 5399776 1584779..1585324 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1585324 5399776 CLC_1518 Clostridium botulinum A str. Hall hypothetical protein YP_001387382.1 1584779 D 441771 CDS YP_001387383.1 153936511 5401393 1585502..1586317 1 NC_009698.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdate ABC transporter periplasmic molybdate-binding protein 1586317 modA 5401393 modA Clostridium botulinum A str. Hall molybdate ABC transporter periplasmic molybdate-binding protein YP_001387383.1 1585502 D 441771 CDS YP_001387384.1 153937465 5400353 1586327..1586998 1 NC_009698.1 identified by match to protein family HMM PF00528; molybdate ABC transporter permease 1586998 modB 5400353 modB Clostridium botulinum A str. Hall molybdate ABC transporter permease YP_001387384.1 1586327 D 441771 CDS YP_001387385.1 153934747 5399423 1587326..1587997 1 NC_009698.1 identified by match to protein family HMM PF00005; molybdate ABC transporter ATP-binding protein 1587997 5399423 CLC_1521 Clostridium botulinum A str. Hall molybdate ABC transporter ATP-binding protein YP_001387385.1 1587326 D 441771 CDS YP_001387386.1 153935937 5400908 1588051..1588611 1 NC_009698.1 hypothetical protein 1588611 5400908 CLC_1522 Clostridium botulinum A str. Hall hypothetical protein YP_001387386.1 1588051 D 441771 CDS YP_001387387.1 153936147 5401194 1588993..1589916 1 NC_009698.1 identified by match to protein family HMM PF01734; patatin-like phospholipase 1589916 5401194 CLC_1523 Clostridium botulinum A str. Hall patatin-like phospholipase YP_001387387.1 1588993 D 441771 CDS YP_001387388.1 153936890 5398567 1590216..1590371 1 NC_009698.1 hypothetical protein 1590371 5398567 CLC_1524 Clostridium botulinum A str. Hall hypothetical protein YP_001387388.1 1590216 D 441771 CDS YP_001387389.1 153936333 5398558 1590644..1591696 1 NC_009698.1 identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1591696 5398558 CLC_1525 Clostridium botulinum A str. Hall methylcobalamin:coenzyme M methyltransferase YP_001387389.1 1590644 D 441771 CDS YP_001387390.1 153937106 5398988 1591784..1593181 1 NC_009698.1 identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 1593181 5398988 CLC_1526 Clostridium botulinum A str. Hall Na+/H+ antiporter family protein YP_001387390.1 1591784 D 441771 CDS YP_001387391.1 153935375 5401743 1593323..1595053 1 NC_009698.1 identified by match to protein family HMM PF00111; (Fe-S)-binding protein 1595053 5401743 CLC_1527 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001387391.1 1593323 D 441771 CDS YP_001387392.1 153935460 5399476 1595143..1596072 1 NC_009698.1 identified by match to protein family HMM PF02492; CobW/P47K family protein 1596072 5399476 CLC_1528 Clostridium botulinum A str. Hall CobW/P47K family protein YP_001387392.1 1595143 D 441771 CDS YP_001387393.1 153937728 5399701 1596095..1596967 1 NC_009698.1 identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1596967 5399701 CLC_1529 Clostridium botulinum A str. Hall methylcobalamin:coenzyme M methyltransferase YP_001387393.1 1596095 D 441771 CDS YP_001387394.1 153934968 5401060 1596993..1597655 1 NC_009698.1 identified by match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM TIGR02370; dimethylamine corrinoid protein 1597655 mtbC 5401060 mtbC Clostridium botulinum A str. Hall dimethylamine corrinoid protein YP_001387394.1 1596993 D 441771 CDS YP_001387395.1 153936561 5401649 1597740..1598762 1 NC_009698.1 catalyze the formation of methyl-coenzyme M from methylcobalamin and coenzyme M; methylcobalamin:coenzyme M methyltransferase 1598762 5401649 CLC_1531 Clostridium botulinum A str. Hall methylcobalamin:coenzyme M methyltransferase YP_001387395.1 1597740 D 441771 CDS YP_001387396.1 153937342 5398301 1599708..1600778 1 NC_009698.1 identified by match to protein family HMM PF01208; methylcobalamin:coenzyme M methyltransferase 1600778 5398301 CLC_1532 Clostridium botulinum A str. Hall methylcobalamin:coenzyme M methyltransferase YP_001387396.1 1599708 D 441771 CDS YP_001387397.1 153934670 5399269 1600801..1601763 1 NC_009698.1 identified by match to protein family HMM PF00005; methionine ABC transporter ATP-binding protein 1601763 5399269 CLC_1533 Clostridium botulinum A str. Hall methionine ABC transporter ATP-binding protein YP_001387397.1 1600801 D 441771 CDS YP_001387398.1 153935344 5399673 1601765..1602421 1 NC_009698.1 identified by match to protein family HMM PF00528; methionine ABC transporter permease 1602421 5399673 CLC_1534 Clostridium botulinum A str. Hall methionine ABC transporter permease YP_001387398.1 1601765 D 441771 CDS YP_001387399.1 153937707 5398598 1602565..1603383 1 NC_009698.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 1603383 5398598 CLC_1535 Clostridium botulinum A str. Hall NLPA family lipoprotein YP_001387399.1 1602565 D 441771 CDS YP_001387400.1 153934785 5400792 complement(1603474..1604043) 1 NC_009698.1 identified by match to protein family HMM PF02493; MORN repeat-containing protein 1604043 5400792 CLC_1536 Clostridium botulinum A str. Hall MORN repeat-containing protein YP_001387400.1 1603474 R 441771 CDS YP_001387401.1 153936636 5401677 1604621..1605640 1 NC_009698.1 identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 1605640 5401677 CLC_1537 Clostridium botulinum A str. Hall FAD/FMN-binding oxidoreductase YP_001387401.1 1604621 D 441771 CDS YP_001387402.1 153937625 5401417 1605969..1606991 1 NC_009698.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1606991 asnA 5401417 asnA Clostridium botulinum A str. Hall asparagine synthetase AsnA YP_001387402.1 1605969 D 441771 CDS YP_001387403.1 153937168 5399585 complement(1607100..1608665) 1 NC_009698.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266; oxidoreductase, FAD dependent 1608665 5399585 CLC_1539 Clostridium botulinum A str. Hall oxidoreductase, FAD dependent YP_001387403.1 1607100 R 441771 CDS YP_001387404.1 153934737 5398532 1609020..1610879 1 NC_009698.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01751; DNA topoisomerase 1610879 5398532 CLC_1540 Clostridium botulinum A str. Hall DNA topoisomerase YP_001387404.1 1609020 D 441771 CDS YP_001387405.1 153937597 5401008 1610906..1612819 1 NC_009698.1 identified by match to protein family HMM PF00488; MutS domain-containing protein 1612819 5401008 CLC_1541 Clostridium botulinum A str. Hall MutS domain-containing protein YP_001387405.1 1610906 D 441771 CDS YP_001387406.1 153935212 5401776 1613136..1614272 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase 1614272 5401776 CLC_1542 Clostridium botulinum A str. Hall aldo/keto reductase YP_001387406.1 1613136 D 441771 CDS YP_001387407.1 153934970 5399845 complement(1614330..1614821) 1 NC_009698.1 identified by match to protein family HMM PF04073; hypothetical protein 1614821 5399845 CLC_1543 Clostridium botulinum A str. Hall hypothetical protein YP_001387407.1 1614330 R 441771 CDS YP_001387408.1 153935911 5400727 1615058..1615756 1 NC_009698.1 identified by match to protein family HMM PF00005; peptide ABC transporter ATP-binding protein 1615756 5400727 CLC_1544 Clostridium botulinum A str. Hall peptide ABC transporter ATP-binding protein YP_001387408.1 1615058 D 441771 CDS YP_001387409.1 153937153 5399353 1617980..1618603 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1618603 5399353 CLC_1546 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001387409.1 1617980 D 441771 CDS YP_001387410.1 153937872 5400716 1618965..1619516 1 NC_009698.1 hypothetical protein 1619516 5400716 CLC_1547 Clostridium botulinum A str. Hall hypothetical protein YP_001387410.1 1618965 D 441771 CDS YP_001387411.1 153935696 5400046 1619529..1620626 1 NC_009698.1 identified by match to protein family HMM PF00005; carbohydrate ABC transporter ATP-binding protein 1620626 5400046 CLC_1548 Clostridium botulinum A str. Hall carbohydrate ABC transporter ATP-binding protein YP_001387411.1 1619529 D 441771 CDS YP_001387412.1 153934608 5400226 1620619..1621512 1 NC_009698.1 identified by match to protein family HMM PF00528; carbohydrate ABC transporter permease 1621512 5400226 CLC_1549 Clostridium botulinum A str. Hall carbohydrate ABC transporter permease YP_001387412.1 1620619 D 441771 CDS YP_001387413.1 153936457 5401202 1621548..1622372 1 NC_009698.1 identified by match to protein family HMM PF00528; carbohydrate ABC transporter permease 1622372 5401202 CLC_1550 Clostridium botulinum A str. Hall carbohydrate ABC transporter permease YP_001387413.1 1621548 D 441771 CDS YP_001387414.1 153937387 5401224 1622418..1623779 1 NC_009698.1 identified by match to protein family HMM PF01547; carbohydrate ABC transporter periplasmic-binding protein 1623779 5401224 CLC_1551 Clostridium botulinum A str. Hall carbohydrate ABC transporter periplasmic-binding protein YP_001387414.1 1622418 D 441771 CDS YP_001387415.1 153935005 5399830 complement(1624003..1624959) 1 NC_009698.1 identified by match to protein family HMM PF00056; match to protein family HMM PF02866; match to protein family HMM TIGR01771; L-lactate dehydrogenase 1624959 ldh 5399830 ldh Clostridium botulinum A str. Hall L-lactate dehydrogenase YP_001387415.1 1624003 R 441771 CDS YP_001387416.1 153935778 5400171 1625489..1626199 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 1626199 5400171 CLC_1553 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387416.1 1625489 D 441771 CDS YP_001387417.1 153936937 5398666 complement(1626646..1627134) 1 NC_009698.1 identified by match to protein family HMM TIGR01909; redox family protein 1627134 5398666 CLC_1554 Clostridium botulinum A str. Hall redox family protein YP_001387417.1 1626646 R 441771 CDS YP_001387418.1 153934682 5401260 1627368..1628315 1 NC_009698.1 identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 1628315 5401260 CLC_1555 Clostridium botulinum A str. Hall C4-dicarboxylate transporter/malic acid transport protein YP_001387418.1 1627368 D 441771 CDS YP_001387420.1 153936611 5400024 1629178..1631376 1 NC_009698.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1631376 5400024 CLC_1557 Clostridium botulinum A str. Hall sensory box-containing diguanylate cyclase YP_001387420.1 1629178 D 441771 CDS YP_001387421.1 153935714 5400780 1631484..1631831 1 NC_009698.1 identified by match to protein family HMM PF03860; hypothetical protein 1631831 5400780 CLC_1558 Clostridium botulinum A str. Hall hypothetical protein YP_001387421.1 1631484 D 441771 CDS YP_001387422.1 153936278 5400258 1632199..1634271 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1634271 5400258 CLC_1559 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387422.1 1632199 D 441771 CDS YP_001387423.1 153937744 5401078 1634477..1634944 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1634944 5401078 CLC_1560 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001387423.1 1634477 D 441771 CDS YP_001387424.1 153936991 5399498 1634971..1635513 1 NC_009698.1 hypothetical protein 1635513 5399498 CLC_1561 Clostridium botulinum A str. Hall hypothetical protein YP_001387424.1 1634971 D 441771 CDS YP_001387425.1 153937585 5399306 complement(1635662..1636015) 1 NC_009698.1 identified by match to protein family HMM PF01638; transcriptional regulator 1636015 5399306 CLC_1562 Clostridium botulinum A str. Hall transcriptional regulator YP_001387425.1 1635662 R 441771 CDS YP_001387426.1 153935058 5399720 1636410..1636775 1 NC_009698.1 identified by match to protein family HMM PF00903; glyoxalase 1636775 5399720 CLC_1563 Clostridium botulinum A str. Hall glyoxalase YP_001387426.1 1636410 D 441771 CDS YP_001387427.1 153934833 5398867 1636804..1637274 1 NC_009698.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated; methylated-DNA--protein-cysteine methyltransferase 1637274 ogt 5398867 ogt Clostridium botulinum A str. Hall methylated-DNA--protein-cysteine methyltransferase YP_001387427.1 1636804 D 441771 CDS YP_001387428.1 153937437 5399870 1637301..1638518 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1638518 5399870 CLC_1565 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387428.1 1637301 D 441771 CDS YP_001387429.1 153936299 5401616 1638683..1639891 1 NC_009698.1 identified by match to protein family HMM PF06792; hypothetical protein 1639891 5401616 CLC_1566 Clostridium botulinum A str. Hall hypothetical protein YP_001387429.1 1638683 D 441771 CDS YP_001387430.1 153936009 5399641 1639916..1640746 1 NC_009698.1 hypothetical protein 1640746 5399641 CLC_1567 Clostridium botulinum A str. Hall hypothetical protein YP_001387430.1 1639916 D 441771 CDS YP_001387431.1 153935321 5399708 1641136..1642248 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 1642248 5399708 CLC_1568 Clostridium botulinum A str. Hall DNA-binding protein YP_001387431.1 1641136 D 441771 CDS YP_001387432.1 153936616 5398685 1642301..1642930 1 NC_009698.1 identified by similarity to SP:Q80XR2; cation transporting ATPase-like protein 1642930 5398685 CLC_1569 Clostridium botulinum A str. Hall cation transporting ATPase-like protein YP_001387432.1 1642301 D 441771 CDS YP_001387433.1 153937599 5401012 1642987..1643856 1 NC_009698.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 1643856 5401012 CLC_1570 Clostridium botulinum A str. Hall cation efflux family protein YP_001387433.1 1642987 D 441771 CDS YP_001387434.1 153935288 5401229 1644342..1645745 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 1645745 5401229 CLC_1571 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001387434.1 1644342 D 441771 CDS YP_001387435.1 153935390 5399847 1646181..1646540 1 NC_009698.1 identified by match to protein family HMM PF01325; match to protein family HMM PF02742; iron-dependent repressor 1646540 5399847 CLC_1572 Clostridium botulinum A str. Hall iron-dependent repressor YP_001387435.1 1646181 D 441771 CDS YP_001387436.1 153937417 5399865 1646638..1647045 1 NC_009698.1 hypothetical protein 1647045 5399865 CLC_1573 Clostridium botulinum A str. Hall hypothetical protein YP_001387436.1 1646638 D 441771 CDS YP_001387437.1 153934733 5398550 1647426..1648280 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM PF08668; match to protein family HMM TIGR00277; HDIG domain-containing protein 1648280 5398550 CLC_1574 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001387437.1 1647426 D 441771 CDS YP_008472685.1 532643410 5400976 1648397..1648558 1 NC_009698.1 hypothetical protein 1648558 5400976 CLC_1576 Clostridium botulinum A str. Hall hypothetical protein YP_008472685.1 1648397 D 441771 CDS YP_001387438.1 153937578 5400095 complement(1648735..1651371) 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting ATPase, P-type 1651371 5400095 CLC_1577 Clostridium botulinum A str. Hall cation-transporting ATPase, P-type YP_001387438.1 1648735 R 441771 CDS YP_001387439.1 153937686 5401324 1652164..1652526 1 NC_009698.1 identified by match to protein family HMM PF00903; glyoxalase 1652526 5401324 CLC_1578 Clostridium botulinum A str. Hall glyoxalase YP_001387439.1 1652164 D 441771 CDS YP_001387440.1 153935060 5401711 1653455..1654150 1 NC_009698.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 1654150 5401711 CLC_1580 Clostridium botulinum A str. Hall cyclic nucleotide-binding domain-containing protein YP_001387440.1 1653455 D 441771 CDS YP_001387441.1 153935839 5399957 1654268..1654438 1 NC_009698.1 identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1654438 5399957 CLC_1581 Clostridium botulinum A str. Hall LuxR family transcriptional regulator YP_001387441.1 1654268 D 441771 CDS YP_001387442.1 153937024 5400194 complement(1654498..1655184) 1 NC_009698.1 identified by match to protein family HMM PF06445; transcription activator effector binding domain-containing protein 1655184 5400194 CLC_1582 Clostridium botulinum A str. Hall transcription activator effector binding domain-containing protein YP_001387442.1 1654498 R 441771 CDS YP_001387443.1 153936393 5400787 complement(1655278..1656222) 1 NC_009698.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279; hypothetical protein 1656222 5400787 CLC_1583 Clostridium botulinum A str. Hall hypothetical protein YP_001387443.1 1655278 R 441771 CDS YP_001387444.1 153934494 5398872 1656846..1657841 1 NC_009698.1 identified by match to protein family HMM PF06050; 2-hydroxyglutaryl-CoA dehydratase subunit 1657841 5398872 CLC_1584 Clostridium botulinum A str. Hall 2-hydroxyglutaryl-CoA dehydratase subunit YP_001387444.1 1656846 D 441771 CDS YP_001387445.1 153935694 5399691 1657958..1658719 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 1658719 hgdC-1 5399691 hgdC-1 Clostridium botulinum A str. Hall 2-hydroxyglutaryl-CoA dehydratase YP_001387445.1 1657958 D 441771 CDS YP_001387446.1 153936414 5398695 1658737..1659168 1 NC_009698.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367; 6-pyruvoyl-tetrahydropterin synthase 1659168 5398695 CLC_1586 Clostridium botulinum A str. Hall 6-pyruvoyl-tetrahydropterin synthase YP_001387446.1 1658737 D 441771 CDS YP_001387447.1 153937587 5401164 1659170..1659835 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1659835 5401164 CLC_1587 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001387447.1 1659170 D 441771 CDS YP_001387448.1 153935134 5399029 1659839..1660429 1 NC_009698.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1660429 folE 5399029 folE Clostridium botulinum A str. Hall GTP cyclohydrolase I YP_001387448.1 1659839 D 441771 CDS YP_001387449.1 153936103 5398869 1660613..1661272 1 NC_009698.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 1661272 5398869 CLC_1589 Clostridium botulinum A str. Hall exoenzyme S synthesis protein B YP_001387449.1 1660613 D 441771 CDS YP_001387450.1 153937363 5400356 1661387..1662343 1 NC_009698.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1662343 5400356 CLC_1590 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387450.1 1661387 D 441771 CDS YP_001387451.1 153936582 5400382 1662518..1663270 1 NC_009698.1 identified by match to protein family HMM PF06161; hypothetical protein 1663270 5400382 CLC_1591 Clostridium botulinum A str. Hall hypothetical protein YP_001387451.1 1662518 D 441771 CDS YP_001387452.1 153937034 5399426 1663592..1664011 1 NC_009698.1 hypothetical protein 1664011 5399426 CLC_1592 Clostridium botulinum A str. Hall hypothetical protein YP_001387452.1 1663592 D 441771 CDS YP_001387453.1 153935838 5399184 1664033..1664971 1 NC_009698.1 identified by match to protein family HMM PF04198; deoxyribonucleoside regulator 1664971 5399184 CLC_1593 Clostridium botulinum A str. Hall deoxyribonucleoside regulator YP_001387453.1 1664033 D 441771 CDS YP_001387454.1 153937183 5400733 1665263..1665901 1 NC_009698.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1665901 deoC 5400733 deoC Clostridium botulinum A str. Hall deoxyribose-phosphate aldolase YP_001387454.1 1665263 D 441771 CDS YP_001387455.1 153936999 5400786 1666245..1667156 1 NC_009698.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152; ribokinase 1667156 rbsK 5400786 rbsK Clostridium botulinum A str. Hall ribokinase YP_001387455.1 1666245 D 441771 CDS YP_001387456.1 153935651 5399020 1667604..1668839 1 NC_009698.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 1668839 hisZ 5399020 hisZ Clostridium botulinum A str. Hall ATP phosphoribosyltransferase YP_001387456.1 1667604 D 441771 CDS YP_001387457.1 153934487 5398484 1668864..1669502 1 NC_009698.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 1669502 hisG 5398484 hisG Clostridium botulinum A str. Hall ATP phosphoribosyltransferase YP_001387457.1 1668864 D 441771 CDS YP_001387458.1 153936583 5401613 1669580..1670884 1 NC_009698.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1670884 hisD 5401613 hisD Clostridium botulinum A str. Hall histidinol dehydrogenase YP_001387458.1 1669580 D 441771 CDS YP_001387459.1 153935645 5399073 1671034..1671624 1 NC_009698.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 1671624 hisB 5399073 hisB Clostridium botulinum A str. Hall imidazoleglycerol-phosphate dehydratase YP_001387459.1 1671034 D 441771 CDS YP_001387460.1 153935259 5399185 1671752..1672357 1 NC_009698.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1672357 hisH 5399185 hisH Clostridium botulinum A str. Hall imidazole glycerol phosphate synthase subunit HisH YP_001387460.1 1671752 D 441771 CDS YP_001387461.1 153936234 5400248 1672354..1673082 1 NC_009698.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1673082 hisA 5400248 hisA Clostridium botulinum A str. Hall 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001387461.1 1672354 D 441771 CDS YP_001387462.1 153936729 5399619 1673079..1674143 1 NC_009698.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1674143 hisC 5399619 hisC Clostridium botulinum A str. Hall histidinol-phosphate aminotransferase YP_001387462.1 1673079 D 441771 CDS YP_001387463.1 153936004 5399507 1674340..1675101 1 NC_009698.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1675101 hisF 5399507 hisF Clostridium botulinum A str. Hall imidazole glycerol phosphate synthase subunit HisF YP_001387463.1 1674340 D 441771 CDS YP_008472686.1 532643397 16691480 1675254..1675586 1 NC_009698.1 phosphoribosyl-AMP cyclohydrolase 1675586 16691480 CLC_1604A Clostridium botulinum A str. Hall phosphoribosyl-AMP cyclohydrolase YP_008472686.1 1675254 D 441771 CDS YP_008472687.1 532643398 16691471 1675711..1676043 1 NC_009698.1 phosphoribosyl-ATP pyrophosphatase 1676043 16691471 CLC_1604B Clostridium botulinum A str. Hall phosphoribosyl-ATP pyrophosphatase YP_008472687.1 1675711 D 441771 CDS YP_001387464.1 153936352 5400105 1676179..1676874 1 NC_009698.1 identified by match to protein family HMM PF04143; hypothetical protein 1676874 5400105 CLC_1605 Clostridium botulinum A str. Hall hypothetical protein YP_001387464.1 1676179 D 441771 CDS YP_001387465.1 153935597 5398936 1676888..1677109 1 NC_009698.1 identified by match to protein family HMM PF01206; hypothetical protein 1677109 5398936 CLC_1606 Clostridium botulinum A str. Hall hypothetical protein YP_001387465.1 1676888 D 441771 CDS YP_001387466.1 153934573 5399617 1677127..1677654 1 NC_009698.1 identified by match to protein family HMM PF04143; hypothetical protein 1677654 5399617 CLC_1607 Clostridium botulinum A str. Hall hypothetical protein YP_001387466.1 1677127 D 441771 CDS YP_001387467.1 153937036 5401447 complement(1677685..1678575) 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1678575 5401447 CLC_1608 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001387467.1 1677685 R 441771 CDS YP_001387468.1 153936768 5401509 1678839..1680089 1 NC_009698.1 identified by match to protein family HMM PF01235; sodium:alanine symporter family protein 1680089 5401509 CLC_1609 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001387468.1 1678839 D 441771 CDS YP_001387469.1 153937498 5400735 1680170..1681870 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1681870 5400735 CLC_1610 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001387469.1 1680170 D 441771 CDS YP_001387470.1 153935246 5400003 1682023..1683279 1 NC_009698.1 identified by match to protein family HMM PF04143; hypothetical protein 1683279 5400003 CLC_1611 Clostridium botulinum A str. Hall hypothetical protein YP_001387470.1 1682023 D 441771 CDS YP_001387471.1 153936040 5398746 1683586..1684293 1 NC_009698.1 identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein 1684293 5398746 CLC_1612 Clostridium botulinum A str. Hall antibiotic ABC transporter ATP-binding protein YP_001387471.1 1683586 D 441771 CDS YP_001387472.1 153935173 5399683 1684296..1685027 1 NC_009698.1 antibiotic ABC transporter permease 1685027 5399683 CLC_1613 Clostridium botulinum A str. Hall antibiotic ABC transporter permease YP_001387472.1 1684296 D 441771 CDS YP_001387473.1 153936123 5400874 1685030..1685773 1 NC_009698.1 antibiotic ABC transporter permease 1685773 5400874 CLC_1614 Clostridium botulinum A str. Hall antibiotic ABC transporter permease YP_001387473.1 1685030 D 441771 CDS YP_001387474.1 153937086 5401482 1685890..1686549 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; antibiotic transporter response regulator 1686549 5401482 CLC_1615 Clostridium botulinum A str. Hall antibiotic transporter response regulator YP_001387474.1 1685890 D 441771 CDS YP_001387475.1 153934620 5399737 1686540..1687919 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; antibiotic transporter sensor protein 1687919 5399737 CLC_1616 Clostridium botulinum A str. Hall antibiotic transporter sensor protein YP_001387475.1 1686540 D 441771 CDS YP_001387476.1 153935569 5398966 1688483..1689709 1 NC_009698.1 identified by match to protein family HMM PF02274; match to protein family HMM TIGR01078; arginine deiminase 1689709 arcA-2 5398966 arcA-2 Clostridium botulinum A str. Hall arginine deiminase YP_001387476.1 1688483 D 441771 CDS YP_001387477.1 153936488 5401757 1689834..1691252 1 NC_009698.1 identified by match to protein family HMM PF00324; arginine/ornithine antiporter 1691252 arcD 5401757 arcD Clostridium botulinum A str. Hall arginine/ornithine antiporter YP_001387477.1 1689834 D 441771 CDS YP_001387478.1 153934777 5399679 complement(1691472..1692122) 1 NC_009698.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III 1692122 5399679 CLC_1619 Clostridium botulinum A str. Hall hemolysin III YP_001387478.1 1691472 R 441771 CDS YP_001387479.1 153935709 5399628 1692493..1693089 1 NC_009698.1 identified by match to protein family HMM PF08876; hypothetical protein 1693089 5399628 CLC_1620 Clostridium botulinum A str. Hall hypothetical protein YP_001387479.1 1692493 D 441771 CDS YP_001387480.1 153937088 5399345 1693460..1694020 1 NC_009698.1 identified by match to protein family HMM PF01966; HD domain-containing protein 1694020 5399345 CLC_1621 Clostridium botulinum A str. Hall HD domain-containing protein YP_001387480.1 1693460 D 441771 CDS YP_001387482.1 153936882 5399315 complement(1694536..1694874) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1694874 5399315 CLC_1623 Clostridium botulinum A str. Hall hypothetical protein YP_001387482.1 1694536 R 441771 CDS YP_001387483.1 153937278 5401258 1695141..1698434 1 NC_009698.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF04851; match to protein family HMM PF08455; SNF2 family helicase 1698434 5401258 CLC_1624 Clostridium botulinum A str. Hall SNF2 family helicase YP_001387483.1 1695141 D 441771 CDS YP_001387484.1 153934781 5399391 1698624..1699439 1 NC_009698.1 identified by match to protein family HMM PF04607; RelA/SpoT domain-containing protein 1699439 5399391 CLC_1625 Clostridium botulinum A str. Hall RelA/SpoT domain-containing protein YP_001387484.1 1698624 D 441771 CDS YP_001387485.1 153937066 5401497 1699858..1700313 1 NC_009698.1 hypothetical protein 1700313 5401497 CLC_1626 Clostridium botulinum A str. Hall hypothetical protein YP_001387485.1 1699858 D 441771 CDS YP_001387486.1 153936100 5400741 1700560..1701549 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 1701549 5400741 CLC_1627 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387486.1 1700560 D 441771 CDS YP_001387487.1 153937773 5401350 1701698..1703452 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1703452 5401350 CLC_1628 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387487.1 1701698 D 441771 CDS YP_001387488.1 153936624 5399486 1703454..1705178 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1705178 5399486 CLC_1629 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387488.1 1703454 D 441771 CDS YP_001387489.1 153935634 5401685 1705570..1706571 1 NC_009698.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 1706571 5401685 CLC_1630 Clostridium botulinum A str. Hall LacI family transcriptional regulator YP_001387489.1 1705570 D 441771 CDS YP_001387490.1 153935077 5400381 1706875..1707822 1 NC_009698.1 identified by match to protein family HMM PF00480; glucokinase 1707822 5400381 CLC_1631 Clostridium botulinum A str. Hall glucokinase YP_001387490.1 1706875 D 441771 CDS YP_001387491.1 153936226 5400518 1708069..1709733 1 NC_009698.1 identified by match to protein family HMM PF00128; glycosyl hydrolase 1709733 5400518 CLC_1632 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001387491.1 1708069 D 441771 CDS YP_001387492.1 153935681 5399663 1709775..1711433 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003; PTS system glucose/glucoside family transporter subunit IIBC 1711433 5399663 CLC_1633 Clostridium botulinum A str. Hall PTS system glucose/glucoside family transporter subunit IIBC YP_001387492.1 1709775 D 441771 CDS YP_001387493.1 153935035 5398714 1712452..1713075 1 NC_009698.1 identified by match to protein family HMM TIGR02840; hypothetical protein 1713075 5398714 CLC_1635 Clostridium botulinum A str. Hall hypothetical protein YP_001387493.1 1712452 D 441771 CDS YP_001387494.1 153937719 5400899 complement(1713364..1713699) 1 NC_009698.1 hypothetical protein 1713699 5400899 CLC_1636 Clostridium botulinum A str. Hall hypothetical protein YP_001387494.1 1713364 R 441771 CDS YP_001387495.1 153936175 5401456 1714027..1715634 1 NC_009698.1 hypothetical protein 1715634 5401456 CLC_1637 Clostridium botulinum A str. Hall hypothetical protein YP_001387495.1 1714027 D 441771 CDS YP_001387496.1 153935124 5400510 1715792..1716247 1 NC_009698.1 hypothetical protein 1716247 5400510 CLC_1638 Clostridium botulinum A str. Hall hypothetical protein YP_001387496.1 1715792 D 441771 CDS YP_001387497.1 153934672 5401806 complement(1716543..1718705) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1718705 5401806 CLC_1639 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387497.1 1716543 R 441771 CDS YP_001387498.1 153937109 5398266 complement(1718683..1719375) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1719375 5398266 CLC_1640 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387498.1 1718683 R 441771 CDS YP_001387500.1 153936653 5400107 1719970..1721196 1 NC_009698.1 identified by match to protein family HMM PF07690; major facilitator family transporter 1721196 5400107 CLC_1642 Clostridium botulinum A str. Hall major facilitator family transporter YP_001387500.1 1719970 D 441771 CDS YP_001387501.1 153935864 5401772 complement(1721751..1722611) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 1722611 5401772 CLC_1643 Clostridium botulinum A str. Hall HAD family hydrolase YP_001387501.1 1721751 R 441771 CDS YP_001387502.1 153935325 5401141 complement(1722620..1723387) 1 NC_009698.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279; DeoR family transcriptional regulator 1723387 5401141 CLC_1644 Clostridium botulinum A str. Hall DeoR family transcriptional regulator YP_001387502.1 1722620 R 441771 CDS YP_001387503.1 153936854 5401443 1723910..1724440 1 NC_009698.1 identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigma factor 1724440 5401443 CLC_1645 Clostridium botulinum A str. Hall RNA polymerase sigma factor YP_001387503.1 1723910 D 441771 CDS YP_001387504.1 153936075 5399459 1724630..1724809 1 NC_009698.1 hypothetical protein 1724809 5399459 CLC_1646 Clostridium botulinum A str. Hall hypothetical protein YP_001387504.1 1724630 D 441771 CDS YP_001387505.1 153936398 5400941 complement(1724992..1728621) 1 NC_009698.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453; collagenase 1728621 5400941 CLC_1647 Clostridium botulinum A str. Hall collagenase YP_001387505.1 1724992 R 441771 CDS YP_001387506.1 153937107 5400681 1729095..1729982 1 NC_009698.1 identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 1729982 metF 5400681 metF Clostridium botulinum A str. Hall 5,10-methylenetetrahydrofolate reductase YP_001387506.1 1729095 D 441771 CDS YP_001387507.1 153937732 5398701 1730155..1730835 1 NC_009698.1 identified by match to protein family HMM PF02965; hypothetical protein 1730835 5398701 CLC_1649 Clostridium botulinum A str. Hall hypothetical protein YP_001387507.1 1730155 D 441771 CDS YP_001387508.1 153935049 5399477 1730825..1733203 1 NC_009698.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; 5-methyltetrahydrofolate--homocysteine methyltransferase 1733203 5399477 CLC_1650 Clostridium botulinum A str. Hall 5-methyltetrahydrofolate--homocysteine methyltransferase YP_001387508.1 1730825 D 441771 CDS YP_001387509.1 153934878 5401698 complement(1733450..1733869) 1 NC_009698.1 hypothetical protein 1733869 5401698 CLC_1651 Clostridium botulinum A str. Hall hypothetical protein YP_001387509.1 1733450 R 441771 CDS YP_001387510.1 153935556 5400154 1734348..1734920 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 1734920 5400154 CLC_1652 Clostridium botulinum A str. Hall RNA polymerase factor sigma-70 YP_001387510.1 1734348 D 441771 CDS YP_001387511.1 153936300 5401545 1734913..1736367 1 NC_009698.1 hypothetical protein 1736367 5401545 CLC_1653 Clostridium botulinum A str. Hall hypothetical protein YP_001387511.1 1734913 D 441771 CDS YP_001387512.1 153935584 5401278 1738839..1739210 1 NC_009698.1 identified by match to protein family HMM TIGR02058; hypothetical protein 1739210 5401278 CLC_1655 Clostridium botulinum A str. Hall hypothetical protein YP_001387512.1 1738839 D 441771 CDS YP_001387513.1 153936990 5400697 1739231..1740214 1 NC_009698.1 identified by match to protein family HMM PF00676; TPP-dependent acetoin dehydrogenase complex, E1 component subunit alpha 1740214 acoA 5400697 acoA Clostridium botulinum A str. Hall TPP-dependent acetoin dehydrogenase complex, E1 component subunit alpha YP_001387513.1 1739231 D 441771 CDS YP_001387514.1 153937737 5399945 1740217..1741188 1 NC_009698.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; TPP-dependent acetoin dehydrogenase complex, E1 component subunit beta 1741188 acoB 5399945 acoB Clostridium botulinum A str. Hall TPP-dependent acetoin dehydrogenase complex, E1 component subunit beta YP_001387514.1 1740217 D 441771 CDS YP_001387515.1 153934661 5399719 1741241..1742236 1 NC_009698.1 identified by match to protein family HMM PF01513; acetoin catabolism protein X 1742236 acoX 5399719 acoX Clostridium botulinum A str. Hall acetoin catabolism protein X YP_001387515.1 1741241 D 441771 CDS YP_001387516.1 153935441 5401631 1742272..1743582 1 NC_009698.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase 1743582 acoC 5401631 acoC Clostridium botulinum A str. Hall TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase YP_001387516.1 1742272 D 441771 CDS YP_001387517.1 153937778 5400231 1743595..1744986 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase 1744986 acoL 5400231 acoL Clostridium botulinum A str. Hall TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase YP_001387517.1 1743595 D 441771 CDS YP_001387518.1 153935051 5400776 1745011..1746006 1 NC_009698.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545; lipoate-protein ligase A 1746006 5400776 CLC_1661 Clostridium botulinum A str. Hall lipoate-protein ligase A YP_001387518.1 1745011 D 441771 CDS YP_001387519.1 153935704 5401344 1746345..1747505 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186; glycine betaine/L-proline ABC transporter ATP-binding protein 1747505 5401344 CLC_1662 Clostridium botulinum A str. Hall glycine betaine/L-proline ABC transporter ATP-binding protein YP_001387519.1 1746345 D 441771 CDS YP_001387520.1 153935827 5400156 1747498..1749081 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069; glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein 1749081 5400156 CLC_1663 Clostridium botulinum A str. Hall glycine betaine/L-proline ABC transporter permease/glycine betaine/L-proline-binding protein YP_001387520.1 1747498 D 441771 CDS YP_001387521.1 153936037 5398411 1749896..1751377 1 NC_009698.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1751377 thrC 5398411 thrC Clostridium botulinum A str. Hall threonine synthase YP_001387521.1 1749896 D 441771 CDS YP_001387522.1 153936225 5400316 1751387..1752280 1 NC_009698.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1752280 thrB 5400316 thrB Clostridium botulinum A str. Hall homoserine kinase YP_001387522.1 1751387 D 441771 CDS YP_001387523.1 153936863 5399858 1752407..1753726 1 NC_009698.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 1753726 5399858 CLC_1666 Clostridium botulinum A str. Hall aspartate kinase YP_001387523.1 1752407 D 441771 CDS YP_001387524.1 153936966 5401133 1753949..1755226 1 NC_009698.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1755226 hom-1 5401133 hom-1 Clostridium botulinum A str. Hall homoserine dehydrogenase YP_001387524.1 1753949 D 441771 CDS YP_001387525.1 153937722 5398677 1755813..1757723 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator 1757723 5398677 CLC_1668 Clostridium botulinum A str. Hall sensory box sigma-54 dependent transcriptional regulator YP_001387525.1 1755813 D 441771 CDS YP_001387526.1 153937364 5398285 1758232..1759398 1 NC_009698.1 identified by match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1759398 5398285 CLC_1669 Clostridium botulinum A str. Hall NADH-dependent butanol dehydrogenase YP_001387526.1 1758232 D 441771 CDS YP_001387527.1 153935790 5401688 1759727..1760614 1 NC_009698.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 1760614 5401688 CLC_1670 Clostridium botulinum A str. Hall ferredoxin-NADP reductase YP_001387527.1 1759727 D 441771 CDS YP_001387528.1 153936605 5399427 1760614..1761996 1 NC_009698.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1761996 gltA-1 5399427 gltA-1 Clostridium botulinum A str. Hall oxidoreductase YP_001387528.1 1760614 D 441771 CDS YP_001387529.1 153937365 5400640 1762225..1764189 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; sensory box sigma-54 dependent transcriptional regulator 1764189 5400640 CLC_1672 Clostridium botulinum A str. Hall sensory box sigma-54 dependent transcriptional regulator YP_001387529.1 1762225 D 441771 CDS YP_001387530.1 153934609 5401082 1764196..1764897 1 NC_009698.1 identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 1764897 5401082 CLC_1673 Clostridium botulinum A str. Hall pentapeptide repeat-containing protein YP_001387530.1 1764196 D 441771 CDS YP_001387531.1 153935409 5399428 1765320..1766399 1 NC_009698.1 identified by match to protein family HMM PF02368; Ig-like domain-containing protein 1766399 5399428 CLC_1674 Clostridium botulinum A str. Hall Ig-like domain-containing protein YP_001387531.1 1765320 D 441771 CDS YP_001387532.1 153934730 5401225 1766508..1766711 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1766711 5401225 CLC_1675 Clostridium botulinum A str. Hall hypothetical protein YP_001387532.1 1766508 D 441771 CDS YP_001387533.1 153936023 5399465 1766891..1767112 1 NC_009698.1 lipoprotein 1767112 5399465 CLC_1676 Clostridium botulinum A str. Hall lipoprotein YP_001387533.1 1766891 D 441771 CDS YP_001387534.1 153936535 5400092 1767471..1767632 1 NC_009698.1 hypothetical protein 1767632 5400092 CLC_1677 Clostridium botulinum A str. Hall hypothetical protein YP_001387534.1 1767471 D 441771 CDS YP_001387535.1 153937297 5398590 1767920..1768294 1 NC_009698.1 identified by match to protein family HMM PF08239; hypothetical protein 1768294 5398590 CLC_1678 Clostridium botulinum A str. Hall hypothetical protein YP_001387535.1 1767920 D 441771 CDS YP_001387536.1 153937543 5400674 1768480..1768704 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1768704 5400674 CLC_1679 Clostridium botulinum A str. Hall hypothetical protein YP_001387536.1 1768480 D 441771 CDS YP_001387537.1 153935311 5401100 1769172..1769408 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1769408 5401100 CLC_1680 Clostridium botulinum A str. Hall hypothetical protein YP_001387537.1 1769172 D 441771 CDS YP_001387538.1 153937015 5401820 1769564..1770115 1 NC_009698.1 hypothetical protein 1770115 5401820 CLC_1681 Clostridium botulinum A str. Hall hypothetical protein YP_001387538.1 1769564 D 441771 CDS YP_008472688.1 532643411 5400253 1770153..1770440 1 NC_009698.1 Fis family transcriptional regulator 1770440 5400253 CLC_1682 Clostridium botulinum A str. Hall Fis family transcriptional regulator YP_008472688.1 1770153 D 441771 CDS YP_001387539.1 153934652 5400492 1770941..1771573 1 NC_009698.1 hypothetical protein 1771573 5400492 CLC_1683 Clostridium botulinum A str. Hall hypothetical protein YP_001387539.1 1770941 D 441771 CDS YP_001387540.1 153935348 5401629 1771606..1772160 1 NC_009698.1 identified by match to protein family HMM PF01814; hypothetical protein 1772160 5401629 CLC_1684 Clostridium botulinum A str. Hall hypothetical protein YP_001387540.1 1771606 D 441771 CDS YP_001387541.1 153934941 5400037 1772598..1773767 1 NC_009698.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1773767 alr 5400037 alr Clostridium botulinum A str. Hall alanine racemase YP_001387541.1 1772598 D 441771 CDS YP_001387542.1 153935589 5399238 1774188..1775660 1 NC_009698.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 1775660 5399238 CLC_1686 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387542.1 1774188 D 441771 CDS YP_001387543.1 153935576 5398400 1775748..1777088 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 1777088 5398400 CLC_1687 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001387543.1 1775748 D 441771 CDS YP_001387544.1 153934615 5400390 1777328..1778161 1 NC_009698.1 identified by match to protein family HMM PF06161; hypothetical protein 1778161 5400390 CLC_1688 Clostridium botulinum A str. Hall hypothetical protein YP_001387544.1 1777328 D 441771 CDS YP_001387545.1 153937843 5398916 complement(1778378..1779262) 1 NC_009698.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1779262 5398916 CLC_1689 Clostridium botulinum A str. Hall short chain dehydrogenase/reductase oxidoreductase YP_001387545.1 1778378 R 441771 CDS YP_001387546.1 153936930 5398839 1779738..1781744 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1781744 5398839 CLC_1690 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387546.1 1779738 D 441771 CDS YP_001387547.1 153935200 5399191 1782657..1783670 1 NC_009698.1 identified by match to protein family HMM PF07656; hypothetical protein 1783670 5399191 CLC_1691 Clostridium botulinum A str. Hall hypothetical protein YP_001387547.1 1782657 D 441771 CDS YP_001387548.1 153937675 5401144 complement(1783823..1784374) 1 NC_009698.1 hypothetical protein 1784374 5401144 CLC_1692 Clostridium botulinum A str. Hall hypothetical protein YP_001387548.1 1783823 R 441771 CDS YP_001387549.1 153936716 5400998 1784734..1787967 1 NC_009698.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455; Snf2/Rad54 family helicase 1787967 5400998 CLC_1693 Clostridium botulinum A str. Hall Snf2/Rad54 family helicase YP_001387549.1 1784734 D 441771 CDS YP_001387550.1 153936403 5400031 complement(1788023..1788304) 1 NC_009698.1 identified by match to protein family HMM PF01980; hypothetical protein 1788304 5400031 CLC_1694 Clostridium botulinum A str. Hall hypothetical protein YP_001387550.1 1788023 R 441771 CDS YP_001387551.1 153935862 5399370 1788905..1789429 1 NC_009698.1 identified by match to protein family HMM PF02663; formylmethanofuran dehydrogenase E subunit-like protein 1789429 5399370 CLC_1695 Clostridium botulinum A str. Hall formylmethanofuran dehydrogenase E subunit-like protein YP_001387551.1 1788905 D 441771 CDS YP_001387552.1 153935301 5398970 1789566..1791161 1 NC_009698.1 identified by match to protein family HMM PF00496; peptide/opine/nickel uptake ABC transporter substrate-binding protein 1791161 5398970 CLC_1696 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter substrate-binding protein YP_001387552.1 1789566 D 441771 CDS YP_001387553.1 153935101 5401490 1791175..1792149 1 NC_009698.1 identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1792149 5401490 CLC_1697 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter permease YP_001387553.1 1791175 D 441771 CDS YP_001387554.1 153935954 5399189 1792153..1792974 1 NC_009698.1 identified by match to protein family HMM PF00528; peptide/opine/nickel uptake ABC transporter permease 1792974 5399189 CLC_1698 Clostridium botulinum A str. Hall peptide/opine/nickel uptake ABC transporter permease YP_001387554.1 1792153 D 441771 CDS YP_001387555.1 153936650 5399135 1793005..1794687 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; ABC transporter ATP-binding protein 1794687 5399135 CLC_1699 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387555.1 1793005 D 441771 CDS YP_001387556.1 153934824 5399515 complement(1794928..1795515) 1 NC_009698.1 identified by match to protein family HMM PF00929; DNA polymerase III subunit epsilon 1795515 5399515 CLC_1700 Clostridium botulinum A str. Hall DNA polymerase III subunit epsilon YP_001387556.1 1794928 R 441771 CDS YP_001387557.1 153934836 5401138 1795810..1796760 1 NC_009698.1 identified by match to protein family HMM PF06207; hypothetical protein 1796760 5401138 CLC_1701 Clostridium botulinum A str. Hall hypothetical protein YP_001387557.1 1795810 D 441771 CDS YP_001387558.1 153935587 5398891 1797032..1797667 1 NC_009698.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methlytransferase 1797667 5398891 CLC_1702 Clostridium botulinum A str. Hall UbiE/COQ5 family methlytransferase YP_001387558.1 1797032 D 441771 CDS YP_001387559.1 153936399 5398748 complement(1797815..1798255) 1 NC_009698.1 identified by match to protein family HMM PF00011; heat shock protein 1798255 5398748 CLC_1703 Clostridium botulinum A str. Hall heat shock protein YP_001387559.1 1797815 R 441771 CDS YP_001387560.1 153937152 5400388 1798606..1799790 1 NC_009698.1 identified by match to protein family HMM PF07690; major facilitator family protein 1799790 5400388 CLC_1704 Clostridium botulinum A str. Hall major facilitator family protein YP_001387560.1 1798606 D 441771 CDS YP_001387561.1 153937565 5398702 1799941..1800504 1 NC_009698.1 identified by match to protein family HMM PF00440; hypothetical protein 1800504 5398702 CLC_1705 Clostridium botulinum A str. Hall hypothetical protein YP_001387561.1 1799941 D 441771 CDS YP_001387562.1 153936365 5400045 1800704..1801609 1 NC_009698.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; fructose-1-phosphate kinase 1801609 fruK 5400045 fruK Clostridium botulinum A str. Hall fructose-1-phosphate kinase YP_001387562.1 1800704 D 441771 CDS YP_001387563.1 153935034 5399200 complement(1801726..1803105) 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 1803105 5399200 CLC_1707 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001387563.1 1801726 R 441771 CDS YP_001387564.1 153937718 5401455 1803700..1803855 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1803855 5401455 CLC_1708 Clostridium botulinum A str. Hall hypothetical protein YP_001387564.1 1803700 D 441771 CDS YP_001387565.1 153936606 5400509 1804007..1804981 1 NC_009698.1 hypothetical protein 1804981 5400509 CLC_1709 Clostridium botulinum A str. Hall hypothetical protein YP_001387565.1 1804007 D 441771 CDS YP_001387566.1 153935893 5401083 complement(1805092..1805625) 1 NC_009698.1 hypothetical protein 1805625 5401083 CLC_1710 Clostridium botulinum A str. Hall hypothetical protein YP_001387566.1 1805092 R 441771 CDS YP_001387567.1 153937802 5399714 1805888..1806043 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1806043 5399714 CLC_1711 Clostridium botulinum A str. Hall hypothetical protein YP_001387567.1 1805888 D 441771 CDS YP_001387568.1 153936875 5399931 1806080..1807039 1 NC_009698.1 identified by match to protein family HMM PF00294; match to protein family HMM PF08543; PfkB family kinase 1807039 5399931 CLC_1712 Clostridium botulinum A str. Hall PfkB family kinase YP_001387568.1 1806080 D 441771 CDS YP_001387569.1 153936301 5399592 complement(1807184..1807819) 1 NC_009698.1 identified by match to protein family HMM PF00188; match to protein family HMM PF01476; spore coat assembly protein SafA 1807819 safA 5399592 safA Clostridium botulinum A str. Hall spore coat assembly protein SafA YP_001387569.1 1807184 R 441771 CDS YP_001387570.1 153935385 5401279 complement(1808221..1808640) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1808640 5401279 CLC_1714 Clostridium botulinum A str. Hall hypothetical protein YP_001387570.1 1808221 R 441771 CDS YP_001387571.1 153936177 5400861 1808987..1809196 1 NC_009698.1 identified by match to protein family HMM PF00313; cold shock protein 1809196 5400861 CLC_1715 Clostridium botulinum A str. Hall cold shock protein YP_001387571.1 1808987 D 441771 CDS YP_001387572.1 153936187 5401808 1809572..1811575 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 1811575 5401808 CLC_1716 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387572.1 1809572 D 441771 CDS YP_001387573.1 153937184 5401018 complement(1811856..1813436) 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 1813436 5401018 CLC_1717 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001387573.1 1811856 R 441771 CDS YP_001387574.1 153935142 5398849 1813742..1814233 1 NC_009698.1 identified by match to protein family HMM PF04073; prolyl-tRNA synthetase 1814233 5398849 CLC_1718 Clostridium botulinum A str. Hall prolyl-tRNA synthetase YP_001387574.1 1813742 D 441771 CDS YP_001387575.1 153936092 5401210 1814804..1815658 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite/nitrite reductase 1815658 5401210 CLC_1719 Clostridium botulinum A str. Hall sulfite/nitrite reductase YP_001387575.1 1814804 D 441771 CDS YP_001387576.1 153936709 5399210 complement(1815798..1816691) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584; chemotaxis protein CheV 1816691 cheV 5399210 cheV Clostridium botulinum A str. Hall chemotaxis protein CheV YP_001387576.1 1815798 R 441771 CDS YP_001387577.1 153934793 5399023 1817060..1818325 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 1818325 5399023 CLC_1721 Clostridium botulinum A str. Hall DEAD/DEAH box helicase YP_001387577.1 1817060 D 441771 CDS YP_001387578.1 153935537 5399694 1818648..1819484 1 NC_009698.1 identified by match to protein family HMM PF00575; RNA-binding protein 1819484 5399694 CLC_1722 Clostridium botulinum A str. Hall RNA-binding protein YP_001387578.1 1818648 D 441771 CDS YP_001387579.1 153936334 5398435 1819663..1821108 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase DeaD 1821108 deaD 5398435 deaD Clostridium botulinum A str. Hall ATP-dependent RNA helicase DeaD YP_001387579.1 1819663 D 441771 CDS YP_001387580.1 153937080 5401744 1821262..1825719 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1825719 5401744 CLC_1724 Clostridium botulinum A str. Hall hypothetical protein YP_001387580.1 1821262 D 441771 CDS YP_001387581.1 153934807 5401354 1826118..1830197 1 NC_009698.1 identified by match to protein family HMM PF00560; match to protein family HMM PF07532; hypothetical protein 1830197 5401354 CLC_1725 Clostridium botulinum A str. Hall hypothetical protein YP_001387581.1 1826118 D 441771 CDS YP_001387582.1 153936673 5400461 1830603..1831532 1 NC_009698.1 identified by match to protein family HMM PF01832; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein 1831532 5400461 CLC_1726 Clostridium botulinum A str. Hall mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase domain-containing protein YP_001387582.1 1830603 D 441771 CDS YP_001387583.1 153934502 5399529 complement(1831658..1832173) 1 NC_009698.1 identified by match to protein family HMM PF00210; ferritin 1832173 5399529 CLC_1727 Clostridium botulinum A str. Hall ferritin YP_001387583.1 1831658 R 441771 CDS YP_001387585.1 153936474 5401471 1832578..1833432 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04509; response regulator 1833432 5401471 CLC_1729 Clostridium botulinum A str. Hall response regulator YP_001387585.1 1832578 D 441771 CDS YP_001387586.1 153937398 5401363 1833432..1833893 1 NC_009698.1 identified by match to protein family HMM PF04509; chemotaxis protein CheX 1833893 cheX 5401363 cheX Clostridium botulinum A str. Hall chemotaxis protein CheX YP_001387586.1 1833432 D 441771 CDS YP_001387587.1 153934949 5401432 complement(1834076..1835434) 1 NC_009698.1 identified by match to protein family HMM PF07670; hypothetical protein 1835434 5401432 CLC_1731 Clostridium botulinum A str. Hall hypothetical protein YP_001387587.1 1834076 R 441771 CDS YP_001387588.1 153935968 5401738 1836172..1836375 1 NC_009698.1 identified by match to protein family HMM PF00269; small, acid-soluble spore protein alpha 1836375 5401738 CLC_1732 Clostridium botulinum A str. Hall small, acid-soluble spore protein alpha YP_001387588.1 1836172 D 441771 CDS YP_001387589.1 153936948 5400222 1836436..1836636 1 NC_009698.1 identified by match to protein family HMM PF00269; small, acid-soluble spore protein beta 1836636 5400222 CLC_1733 Clostridium botulinum A str. Hall small, acid-soluble spore protein beta YP_001387589.1 1836436 D 441771 CDS YP_001387590.1 153937281 5400871 complement(1836840..1837169) 1 NC_009698.1 Selenoprotein. identified by match to protein family HMM TIGR01911; hesB family protein 1837169 5400871 CLC_1734 Clostridium botulinum A str. Hall hesB family protein YP_001387590.1 1836840 R 441771 CDS YP_001387591.1 153936224 5401500 1838087..1839067 1 NC_009698.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1839067 xerC 5401500 xerC Clostridium botulinum A str. Hall site-specific tyrosine recombinase XerC YP_001387591.1 1838087 D 441771 CDS YP_001387592.1 153937322 5401132 complement(1839390..1839863) 1 NC_009698.1 hypothetical protein 1839863 5401132 CLC_1736 Clostridium botulinum A str. Hall hypothetical protein YP_001387592.1 1839390 R 441771 CDS YP_001387593.1 153936246 5399521 1840161..1840766 1 NC_009698.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1840766 lexA 5399521 lexA Clostridium botulinum A str. Hall LexA repressor YP_001387593.1 1840161 D 441771 CDS YP_001387594.1 153936142 5399115 complement(1840963..1842246) 1 NC_009698.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838; aluminum resistance protein 1842246 5399115 CLC_1738 Clostridium botulinum A str. Hall aluminum resistance protein YP_001387594.1 1840963 R 441771 CDS YP_001387595.1 153934601 5400957 complement(1842347..1842604) 1 NC_009698.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1842604 hfq 5400957 hfq Clostridium botulinum A str. Hall RNA chaperone Hfq YP_001387595.1 1842347 R 441771 CDS YP_001387596.1 153937216 5401241 complement(1842690..1843625) 1 NC_009698.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1843625 miaA 5401241 miaA Clostridium botulinum A str. Hall tRNA delta(2)-isopentenylpyrophosphate transferase YP_001387596.1 1842690 R 441771 CDS YP_001387597.1 153936560 5398361 complement(1843641..1845641) 1 NC_009698.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1845641 mutL 5398361 mutL Clostridium botulinum A str. Hall DNA mismatch repair protein YP_001387597.1 1843641 R 441771 CDS YP_001387598.1 153936669 5399268 complement(1848665..1850017) 1 NC_009698.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1850017 miaB 5399268 miaB Clostridium botulinum A str. Hall (dimethylallyl)adenosine tRNA methylthiotransferase YP_001387598.1 1848665 R 441771 CDS YP_001387599.1 153936139 5401710 1850489..1851679 1 NC_009698.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 1851679 5401710 CLC_1744 Clostridium botulinum A str. Hall aminotransferase, classes I and II YP_001387599.1 1850489 D 441771 CDS YP_001387600.1 153935187 5399770 1851764..1851925 1 NC_009698.1 identified by similarity to GB:ABK61786.1; hypothetical protein 1851925 5399770 CLC_1745 Clostridium botulinum A str. Hall hypothetical protein YP_001387600.1 1851764 D 441771 CDS YP_001387601.1 153936797 5400954 1851980..1853170 1 NC_009698.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1853170 aspB-1 5400954 aspB-1 Clostridium botulinum A str. Hall aspartate aminotransferase YP_001387601.1 1851980 D 441771 CDS YP_001387602.1 153936063 5399954 complement(1853201..1854067) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1854067 5399954 CLC_1747 Clostridium botulinum A str. Hall acetyltransferase YP_001387602.1 1853201 R 441771 CDS YP_001387603.1 153935267 5400138 complement(1854149..1855207) 1 NC_009698.1 identified by match to protein family HMM TIGR02906; spore coat protein 1855207 5400138 CLC_1748 Clostridium botulinum A str. Hall spore coat protein YP_001387603.1 1854149 R 441771 CDS YP_001387604.1 153937572 5398640 complement(1855455..1857371) 1 NC_009698.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1857371 5398640 CLC_1749 Clostridium botulinum A str. Hall 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001387604.1 1855455 R 441771 CDS YP_001387605.1 153936766 5401093 complement(1857435..1858088) 1 NC_009698.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 1858088 cmk 5401093 cmk Clostridium botulinum A str. Hall cytidylate kinase YP_001387605.1 1857435 R 441771 CDS YP_001387606.1 153934745 5401300 complement(1858164..1858535) 1 NC_009698.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase 1858535 aroH 5401300 aroH Clostridium botulinum A str. Hall chorismate mutase YP_001387606.1 1858164 R 441771 CDS YP_001387607.1 153937519 5400001 complement(1858535..1859758) 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase 1859758 5400001 CLC_1752 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001387607.1 1858535 R 441771 CDS YP_001387608.1 153936267 5401192 complement(1860053..1861318) 1 NC_009698.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812; glutamate dehydrogenase 1861318 gluD 5401192 gluD Clostridium botulinum A str. Hall glutamate dehydrogenase YP_001387608.1 1860053 R 441771 CDS YP_001387609.1 153935531 5401550 complement(1861553..1862437) 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator 1862437 5401550 CLC_1754 Clostridium botulinum A str. Hall RpiR family transcriptional regulator YP_001387609.1 1861553 R 441771 CDS YP_001387610.1 153937131 5401269 complement(1862805..1863515) 1 NC_009698.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1863515 rluB 5401269 rluB Clostridium botulinum A str. Hall ribosomal large subunit pseudouridine synthase B YP_001387610.1 1862805 R 441771 CDS YP_001387611.1 153935970 5401474 complement(1863978..1865267) 1 NC_009698.1 hypothetical protein 1865267 5401474 CLC_1756 Clostridium botulinum A str. Hall hypothetical protein YP_001387611.1 1863978 R 441771 CDS YP_001387612.1 153934676 5398524 complement(1865365..1866645) 1 NC_009698.1 identified by match to protein family HMM PF06354; hypothetical protein 1866645 5398524 CLC_1757 Clostridium botulinum A str. Hall hypothetical protein YP_001387612.1 1865365 R 441771 CDS YP_001387613.1 153935417 5400224 complement(1866940..1868343) 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1868343 5400224 CLC_1758 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001387613.1 1866940 R 441771 CDS YP_001387614.1 153936973 5399259 1868713..1868904 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1868904 5399259 CLC_1759 Clostridium botulinum A str. Hall hypothetical protein YP_001387614.1 1868713 D 441771 CDS YP_001387615.1 153937753 5400933 1869277..1871298 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1871298 5400933 CLC_1760 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387615.1 1869277 D 441771 CDS YP_001387616.1 153935076 5400599 complement(1871342..1872028) 1 NC_009698.1 identified by match to protein family HMM PF02683; cytochrome c-type biogenesis protein 1872028 5400599 CLC_1761 Clostridium botulinum A str. Hall cytochrome c-type biogenesis protein YP_001387616.1 1871342 R 441771 CDS YP_001387617.1 153935828 5401703 complement(1872030..1872461) 1 NC_009698.1 identified by match to protein family HMM PF00085; thioredoxin family protein 1872461 5401703 CLC_1762 Clostridium botulinum A str. Hall thioredoxin family protein YP_001387617.1 1872030 R 441771 CDS YP_001387618.1 153935362 5399662 complement(1872576..1873412) 1 NC_009698.1 identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 1873412 5399662 CLC_1763 Clostridium botulinum A str. Hall carbon-nitrogen family hydrolase YP_001387618.1 1872576 R 441771 CDS YP_001387619.1 153936540 5398535 complement(1873543..1874097) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1874097 5398535 CLC_1764 Clostridium botulinum A str. Hall hypothetical protein YP_001387619.1 1873543 R 441771 CDS YP_001387620.1 153937823 5400272 1874509..1875942 1 NC_009698.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; monovalent cation:proton antiporter-2 (CPA2) family protein 1875942 5400272 CLC_1765 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001387620.1 1874509 D 441771 CDS YP_001387621.1 153937581 5400564 complement(1876067..1876411) 1 NC_009698.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; 4-carboxymuconolactone decarboxylase 1876411 pcaC-1 5400564 pcaC-1 Clostridium botulinum A str. Hall 4-carboxymuconolactone decarboxylase YP_001387621.1 1876067 R 441771 CDS YP_001387622.1 153934853 5399795 complement(1876549..1877064) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 1877064 5399795 CLC_1767 Clostridium botulinum A str. Hall acetyltransferase YP_001387622.1 1876549 R 441771 CDS YP_001387623.1 153937666 5398935 complement(1877249..1877743) 1 NC_009698.1 lipoprotein 1877743 5398935 CLC_1768 Clostridium botulinum A str. Hall lipoprotein YP_001387623.1 1877249 R 441771 CDS YP_001387624.1 153934703 5400242 complement(1877975..1878286) 1 NC_009698.1 identified by match to protein family HMM PF01906; hypothetical protein 1878286 5400242 CLC_1769 Clostridium botulinum A str. Hall hypothetical protein YP_001387624.1 1877975 R 441771 CDS YP_001387625.1 153936168 5401661 complement(1878267..1878500) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1878500 5401661 CLC_1770 Clostridium botulinum A str. Hall hypothetical protein YP_001387625.1 1878267 R 441771 CDS YP_001387626.1 153936655 5401716 1878634..1878876 1 NC_009698.1 identified by similarity to GB:ABA89073.1; hypothetical protein 1878876 5401716 CLC_1771 Clostridium botulinum A str. Hall hypothetical protein YP_001387626.1 1878634 D 441771 CDS YP_001387627.1 153936361 5400187 1878879..1880603 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229; sensory box-containing [Fe] hydrogenase 1880603 5400187 CLC_1772 Clostridium botulinum A str. Hall sensory box-containing [Fe] hydrogenase YP_001387627.1 1878879 D 441771 CDS YP_001387628.1 153937163 5400069 1880600..1881769 1 NC_009698.1 identified by match to protein family HMM PF07228; sporulation domain-containing protein 1881769 5400069 CLC_1773 Clostridium botulinum A str. Hall sporulation domain-containing protein YP_001387628.1 1880600 D 441771 CDS YP_001387629.1 153934870 5398357 1881904..1883643 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; match to protein family HMM PF04060; match to protein family HMM TIGR00229; sensory box-containing [Fe] hydrogenase 1883643 5398357 CLC_1774 Clostridium botulinum A str. Hall sensory box-containing [Fe] hydrogenase YP_001387629.1 1881904 D 441771 CDS YP_001387630.1 153935606 5401003 complement(1883996..1885000) 1 NC_009698.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 1885000 hypE 5401003 hypE Clostridium botulinum A str. Hall hydrogenase expression/formation protein HypE YP_001387630.1 1883996 R 441771 CDS YP_001387631.1 153936552 5399257 complement(1885168..1886241) 1 NC_009698.1 identified by match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 1886241 hypD 5399257 hypD Clostridium botulinum A str. Hall hydrogenase expression/formation protein HypD YP_001387631.1 1885168 R 441771 CDS YP_001387632.1 153935339 5399232 complement(1886234..1886461) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1886461 5399232 CLC_1777 Clostridium botulinum A str. Hall hypothetical protein YP_001387632.1 1886234 R 441771 CDS YP_001387633.1 153936241 5400325 complement(1886424..1888862) 1 NC_009698.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 1888862 hypF 5400325 hypF Clostridium botulinum A str. Hall [NiFe] hydrogenase maturation protein HypF YP_001387633.1 1886424 R 441771 CDS YP_001387634.1 153935684 5399779 complement(1888846..1889106) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1889106 5399779 CLC_1779 Clostridium botulinum A str. Hall hypothetical protein YP_001387634.1 1888846 R 441771 CDS YP_001387635.1 153934748 5398277 complement(1889361..1889876) 1 NC_009698.1 identified by match to protein family HMM PF00173; heme/steroid binding domain-containing protein 1889876 5398277 CLC_1780 Clostridium botulinum A str. Hall heme/steroid binding domain-containing protein YP_001387635.1 1889361 R 441771 CDS YP_001387636.1 153937639 5398717 complement(1890036..1890452) 1 NC_009698.1 identified by match to protein family HMM PF01750; hydrogenase maturation protease 1890452 5398717 CLC_1781 Clostridium botulinum A str. Hall hydrogenase maturation protease YP_001387636.1 1890036 R 441771 CDS YP_001387637.1 153936652 5401195 complement(1890485..1891900) 1 NC_009698.1 identified by match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit 1891900 hupL 5401195 hupL Clostridium botulinum A str. Hall [Ni/Fe] hydrogenase, large subunit YP_001387637.1 1890485 R 441771 CDS YP_001387638.1 153936086 5401574 complement(1892002..1892874) 1 NC_009698.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; [Ni/Fe] hydrogenase, small subunit 1892874 hupS 5401574 hupS Clostridium botulinum A str. Hall [Ni/Fe] hydrogenase, small subunit YP_001387638.1 1892002 R 441771 CDS YP_001387639.1 153937061 5401140 1893142..1893843 1 NC_009698.1 identified by match to protein family HMM PF05857; TraX family protein 1893843 5401140 CLC_1784 Clostridium botulinum A str. Hall TraX family protein YP_001387639.1 1893142 D 441771 CDS YP_001387640.1 153936305 5399710 complement(1894005..1894292) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1894292 5399710 CLC_1785 Clostridium botulinum A str. Hall hypothetical protein YP_001387640.1 1894005 R 441771 CDS YP_001387642.1 153936936 5401283 1894827..1894994 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1894994 5401283 CLC_1787 Clostridium botulinum A str. Hall hypothetical protein YP_001387642.1 1894827 D 441771 CDS YP_001387643.1 153936622 5401667 1895885..1896052 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1896052 5401667 CLC_1788 Clostridium botulinum A str. Hall hypothetical protein YP_001387643.1 1895885 D 441771 CDS YP_001387644.1 153937826 5399763 complement(1896661..1898217) 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 1898217 5399763 CLC_1789 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001387644.1 1896661 R 441771 CDS YP_001387645.1 153935257 5400379 complement(1898579..1900312) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512; [Fe] hydrogenase 1900312 5400379 CLC_1790 Clostridium botulinum A str. Hall [Fe] hydrogenase YP_001387645.1 1898579 R 441771 CDS YP_001387646.1 153936195 5399798 complement(1900332..1902227) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01512; [Fe] hydrogenase, electron-transfer subunit 1902227 5399798 CLC_1791 Clostridium botulinum A str. Hall [Fe] hydrogenase, electron-transfer subunit YP_001387646.1 1900332 R 441771 CDS YP_001387647.1 153936196 5400218 complement(1902239..1902718) 1 NC_009698.1 identified by match to protein family HMM PF01257; Fe] hydrogenase, electron-transfer subunit 1902718 5400218 CLC_1792 Clostridium botulinum A str. Hall Fe] hydrogenase, electron-transfer subunit YP_001387647.1 1902239 R 441771 CDS YP_001387648.1 153937349 5398879 complement(1903194..1904381) 1 NC_009698.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 1904381 5398879 CLC_1793 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001387648.1 1903194 R 441771 CDS YP_001387649.1 153934892 5398880 complement(1904640..1905518) 1 NC_009698.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 1905518 5398880 CLC_1794 Clostridium botulinum A str. Hall ADP-ribosylglycohydrolase YP_001387649.1 1904640 R 441771 CDS YP_001387650.1 153935595 5399446 1905759..1906853 1 NC_009698.1 identified by match to protein family HMM PF01594; hypothetical protein 1906853 5399446 CLC_1795 Clostridium botulinum A str. Hall hypothetical protein YP_001387650.1 1905759 D 441771 CDS YP_001387651.1 153934860 5400994 complement(1906963..1908099) 1 NC_009698.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1908099 dacB 5400994 dacB Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001387651.1 1906963 R 441771 CDS YP_001387652.1 153935397 5399820 1908333..1908794 1 NC_009698.1 hypothetical protein 1908794 5399820 CLC_1797 Clostridium botulinum A str. Hall hypothetical protein YP_001387652.1 1908333 D 441771 CDS YP_001387653.1 153935276 5398328 1908862..1909302 1 NC_009698.1 identified by match to protein family HMM TIGR02874; sporulation protein YtfJ 1909302 ytfJ 5398328 ytfJ Clostridium botulinum A str. Hall sporulation protein YtfJ YP_001387653.1 1908862 D 441771 CDS YP_001387654.1 153935812 5400236 complement(1909363..1909944) 1 NC_009698.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer; segregation and condensation protein B 1909944 scpB 5400236 scpB Clostridium botulinum A str. Hall segregation and condensation protein B YP_001387654.1 1909363 R 441771 CDS YP_001387655.1 153935515 5399300 complement(1909937..1910683) 1 NC_009698.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 1910683 scpA 5399300 scpA Clostridium botulinum A str. Hall segregation and condensation protein A YP_001387655.1 1909937 R 441771 CDS YP_001387656.1 153937751 5399975 complement(1910658..1911248) 1 NC_009698.1 identified by similarity to PDB:1VFG_A; hypothetical protein 1911248 5399975 CLC_1801 Clostridium botulinum A str. Hall hypothetical protein YP_001387656.1 1910658 R 441771 CDS YP_001387657.1 153937458 5400162 complement(1911461..1912684) 1 NC_009698.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1912684 dacF 5400162 dacF Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001387657.1 1911461 R 441771 CDS YP_001387658.1 153934575 5401696 complement(1912807..1913529) 1 NC_009698.1 hypothetical protein 1913529 5401696 CLC_1803 Clostridium botulinum A str. Hall hypothetical protein YP_001387658.1 1912807 R 441771 CDS YP_001387659.1 153935873 5398442 complement(1913688..1914746) 1 NC_009698.1 identified by match to protein family HMM PF03372; hypothetical protein 1914746 5398442 CLC_1804 Clostridium botulinum A str. Hall hypothetical protein YP_001387659.1 1913688 R 441771 CDS YP_001387660.1 153936483 5401778 complement(1914888..1915136) 1 NC_009698.1 hypothetical protein 1915136 5401778 CLC_1805 Clostridium botulinum A str. Hall hypothetical protein YP_001387660.1 1914888 R 441771 CDS YP_001387661.1 153937290 5398261 complement(1915243..1916547) 1 NC_009698.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 1916547 pdp 5398261 pdp Clostridium botulinum A str. Hall pyrimidine-nucleoside phosphorylase YP_001387661.1 1915243 R 441771 CDS YP_001387662.1 153934655 5400343 complement(1916833..1917648) 1 NC_009698.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 1917648 punA 5400343 punA Clostridium botulinum A str. Hall purine nucleoside phosphorylase YP_001387662.1 1916833 R 441771 CDS YP_001387663.1 153934877 5399759 complement(1917686..1918561) 1 NC_009698.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 1918561 xerD 5399759 xerD Clostridium botulinum A str. Hall tyrosine recombinase XerD YP_001387663.1 1917686 R 441771 CDS YP_001387664.1 153936690 5400799 complement(1918613..1918840) 1 NC_009698.1 identified by similarity to GB:AAK80026.1; hypothetical protein 1918840 5400799 CLC_1809 Clostridium botulinum A str. Hall hypothetical protein YP_001387664.1 1918613 R 441771 CDS YP_001387665.1 153937658 5401544 complement(1918831..1919484) 1 NC_009698.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831; sporulation protein 1919484 5401544 CLC_1810 Clostridium botulinum A str. Hall sporulation protein YP_001387665.1 1918831 R 441771 CDS YP_001387666.1 153935175 5400583 complement(1919689..1920225) 1 NC_009698.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR00052; NUDIX family hydrolase 1920225 5400583 CLC_1811 Clostridium botulinum A str. Hall NUDIX family hydrolase YP_001387666.1 1919689 R 441771 CDS YP_001387667.1 153935146 5401653 complement(1920709..1922235) 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 1922235 5401653 CLC_1812 Clostridium botulinum A str. Hall amino acid permease YP_001387667.1 1920709 R 441771 CDS YP_001387668.1 153936106 5401484 complement(1922786..1923544) 1 NC_009698.1 identified by match to protein family HMM PF00877; nlpC/P60 family protein 1923544 5401484 CLC_1813 Clostridium botulinum A str. Hall nlpC/P60 family protein YP_001387668.1 1922786 R 441771 CDS YP_001387669.1 153936350 5401293 complement(1925029..1925643) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1925643 5401293 CLC_1814 Clostridium botulinum A str. Hall hypothetical protein YP_001387669.1 1925029 R 441771 CDS YP_001387670.1 153937330 5400385 complement(1925779..1926573) 1 NC_009698.1 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 1926573 5400385 CLC_1815 Clostridium botulinum A str. Hall phage integrase site specific recombinase YP_001387670.1 1925779 R 441771 CDS YP_001387671.1 153937632 5399615 complement(1926860..1927681) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875; sporulation transcription factor Spo0A 1927681 spo0A 5399615 spo0A Clostridium botulinum A str. Hall sporulation transcription factor Spo0A YP_001387671.1 1926860 R 441771 CDS YP_001387672.1 153934727 5400644 complement(1928111..1929337) 1 NC_009698.1 identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860; stage IV sporulation protein B 1929337 spoIVB 5400644 spoIVB Clostridium botulinum A str. Hall stage IV sporulation protein B YP_001387672.1 1928111 R 441771 CDS YP_001387673.1 153934712 5399014 complement(1929759..1930655) 1 NC_009698.1 identified by match to protein family HMM PF04204; match to protein family HMM TIGR01001; homoserine O-succinyltransferase 1930655 metA 5399014 metA Clostridium botulinum A str. Hall homoserine O-succinyltransferase YP_001387673.1 1929759 R 441771 CDS YP_001387674.1 153935671 5400854 complement(1930682..1931908) 1 NC_009698.1 identified by match to protein family HMM PF00742; match to protein family HMM PF03447; homoserine dehydrogenase 1931908 hom-2 5400854 hom-2 Clostridium botulinum A str. Hall homoserine dehydrogenase YP_001387674.1 1930682 R 441771 CDS YP_001387675.1 153936680 5398755 complement(1931948..1933228) 1 NC_009698.1 identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 1933228 5398755 CLC_1820 Clostridium botulinum A str. Hall O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase YP_001387675.1 1931948 R 441771 CDS YP_001387676.1 153937847 5398562 complement(1933527..1935230) 1 NC_009698.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein recN 1935230 recN 5398562 recN Clostridium botulinum A str. Hall DNA repair protein recN YP_001387676.1 1933527 R 441771 CDS YP_001387677.1 153936006 5401477 complement(1935243..1935695) 1 NC_009698.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor ArgR 1935695 argR 5401477 argR Clostridium botulinum A str. Hall arginine repressor ArgR YP_001387677.1 1935243 R 441771 CDS YP_001387678.1 153935423 5399195 complement(1935697..1936542) 1 NC_009698.1 identified by match to protein family HMM PF01513; ATP-NAD kinase 1936542 ppnK 5399195 ppnK Clostridium botulinum A str. Hall ATP-NAD kinase YP_001387678.1 1935697 R 441771 CDS YP_001387679.1 153936268 5398682 complement(1936542..1937363) 1 NC_009698.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1937363 5398682 CLC_1824 Clostridium botulinum A str. Hall hemolysin A YP_001387679.1 1936542 R 441771 CDS YP_001387680.1 153937476 5401253 complement(1937385..1939253) 1 NC_009698.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 1939253 dxs 5401253 dxs Clostridium botulinum A str. Hall 1-deoxy-D-xylulose-5-phosphate synthase YP_001387680.1 1937385 R 441771 CDS YP_001387681.1 153937526 5401270 complement(1939254..1939823) 1 NC_009698.1 hypothetical protein 1939823 5401270 CLC_1826 Clostridium botulinum A str. Hall hypothetical protein YP_001387681.1 1939254 R 441771 CDS YP_001387682.1 153937414 5398422 complement(1940624..1941496) 1 NC_009698.1 identified by match to protein family HMM PF00348; geranyltranstransferase 1941496 ispA 5398422 ispA Clostridium botulinum A str. Hall geranyltranstransferase YP_001387682.1 1940624 R 441771 CDS YP_001387683.1 153936799 5398243 complement(1941621..1941836) 1 NC_009698.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1941836 xseB 5398243 xseB Clostridium botulinum A str. Hall exodeoxyribonuclease VII small subunit YP_001387683.1 1941621 R 441771 CDS YP_001387684.1 153936081 5401321 complement(1941959..1943164) 1 NC_009698.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1943164 xseA 5401321 xseA Clostridium botulinum A str. Hall exodeoxyribonuclease VII large subunit YP_001387684.1 1941959 R 441771 CDS YP_001387685.1 153934479 5400140 complement(1943235..1943666) 1 NC_009698.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1943666 nusB 5400140 nusB Clostridium botulinum A str. Hall transcription antitermination protein NusB YP_001387685.1 1943235 R 441771 CDS YP_001387686.1 153937796 5400211 complement(1943805..1944200) 1 NC_009698.1 identified by match to protein family HMM PF03780; alkaline shock protein 1944200 asp 5400211 asp Clostridium botulinum A str. Hall alkaline shock protein YP_001387686.1 1943805 R 441771 CDS YP_001387687.1 153936465 5401603 complement(1944282..1944806) 1 NC_009698.1 stage III sporulation protein AH 1944806 5401603 CLC_1832 Clostridium botulinum A str. Hall stage III sporulation protein AH YP_001387687.1 1944282 R 441771 CDS YP_001387688.1 153935498 5398272 complement(1944868..1945464) 1 NC_009698.1 identified by match to protein family HMM TIGR02830; stage III sporulation protein AG 1945464 5398272 CLC_1833 Clostridium botulinum A str. Hall stage III sporulation protein AG YP_001387688.1 1944868 R 441771 CDS YP_001387689.1 153935857 5401182 complement(1945602..1946192) 1 NC_009698.1 identified by match to protein family HMM TIGR02896; stage III sporulation protein AF 1946192 spoIIIAF 5401182 spoIIIAF Clostridium botulinum A str. Hall stage III sporulation protein AF YP_001387689.1 1945602 R 441771 CDS YP_001387690.1 153934919 5399666 complement(1946228..1947391) 1 NC_009698.1 identified by match to protein family HMM TIGR02829; stage III sporulation protein AE 1947391 5399666 CLC_1835 Clostridium botulinum A str. Hall stage III sporulation protein AE YP_001387690.1 1946228 R 441771 CDS YP_001387691.1 153936764 5400136 complement(1947400..1947783) 1 NC_009698.1 identified by match to protein family HMM TIGR02849; stage III sporulation protein AD 1947783 5400136 CLC_1836 Clostridium botulinum A str. Hall stage III sporulation protein AD YP_001387691.1 1947400 R 441771 CDS YP_001387692.1 153937701 5398761 complement(1947810..1948007) 1 NC_009698.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848; stage III sporulation protein AC 1948007 5398761 CLC_1837 Clostridium botulinum A str. Hall stage III sporulation protein AC YP_001387692.1 1947810 R 441771 CDS YP_001387693.1 153934644 5400066 complement(1948050..1948568) 1 NC_009698.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 1948568 5400066 CLC_1838 Clostridium botulinum A str. Hall stage III sporulation protein SpoAB YP_001387693.1 1948050 R 441771 CDS YP_001387694.1 153935244 5401593 complement(1948605..1949528) 1 NC_009698.1 identified by match to protein family HMM TIGR02858; stage III sporulation protein AA 1949528 5401593 CLC_1839 Clostridium botulinum A str. Hall stage III sporulation protein AA YP_001387694.1 1948605 R 441771 CDS YP_001387695.1 153936140 5400769 complement(1949723..1950142) 1 NC_009698.1 hypothetical protein 1950142 5400769 CLC_1840 Clostridium botulinum A str. Hall hypothetical protein YP_001387695.1 1949723 R 441771 CDS YP_001387696.1 153935147 5399852 complement(1950183..1950740) 1 NC_009698.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1950740 efp 5399852 efp Clostridium botulinum A str. Hall elongation factor P YP_001387696.1 1950183 R 441771 CDS YP_001387697.1 153937207 5400955 complement(1950829..1951272) 1 NC_009698.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1951272 aroQ 5400955 aroQ Clostridium botulinum A str. Hall 3-dehydroquinate dehydratase YP_001387697.1 1950829 R 441771 CDS YP_001387698.1 153934761 5401294 complement(1951427..1951939) 1 NC_009698.1 identified by match to protein family HMM PF01202; shikimate kinase 1951939 aroK 5401294 aroK Clostridium botulinum A str. Hall shikimate kinase YP_001387698.1 1951427 R 441771 CDS YP_001387699.1 153935723 5400405 complement(1952073..1952567) 1 NC_009698.1 hypothetical protein 1952567 5400405 CLC_1844 Clostridium botulinum A str. Hall hypothetical protein YP_001387699.1 1952073 R 441771 CDS YP_001387700.1 153936681 5399365 complement(1952573..1953019) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1953019 5399365 CLC_1845 Clostridium botulinum A str. Hall hypothetical protein YP_001387700.1 1952573 R 441771 CDS YP_001387701.1 153935546 5399052 complement(1953035..1953724) 1 NC_009698.1 hypothetical protein 1953724 5399052 CLC_1846 Clostridium botulinum A str. Hall hypothetical protein YP_001387701.1 1953035 R 441771 CDS YP_001387702.1 153936015 5401478 complement(1953752..1954198) 1 NC_009698.1 lipoprotein 1954198 5401478 CLC_1847 Clostridium botulinum A str. Hall lipoprotein YP_001387702.1 1953752 R 441771 CDS YP_001387703.1 153935255 5399970 complement(1954177..1954617) 1 NC_009698.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; hypothetical protein 1954617 5399970 CLC_1848 Clostridium botulinum A str. Hall hypothetical protein YP_001387703.1 1954177 R 441771 CDS YP_001387704.1 153937406 5401832 complement(1954614..1955060) 1 NC_009698.1 identified by match to protein family HMM TIGR02532; hypothetical protein 1955060 5401832 CLC_1849 Clostridium botulinum A str. Hall hypothetical protein YP_001387704.1 1954614 R 441771 CDS YP_001387705.1 153936448 5400216 complement(1955041..1955493) 1 NC_009698.1 hypothetical protein 1955493 5400216 CLC_1850 Clostridium botulinum A str. Hall hypothetical protein YP_001387705.1 1955041 R 441771 CDS YP_001387706.1 153935514 5400719 complement(1955895..1956299) 1 NC_009698.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin 1956299 5400719 CLC_1851 Clostridium botulinum A str. Hall pilin YP_001387706.1 1955895 R 441771 CDS YP_001387707.1 153934559 5400600 complement(1956485..1957675) 1 NC_009698.1 identified by match to protein family HMM PF00482; type II secretion system protein F 1957675 5400600 CLC_1852 Clostridium botulinum A str. Hall type II secretion system protein F YP_001387707.1 1956485 R 441771 CDS YP_001387708.1 153934925 5400161 complement(1957820..1959349) 1 NC_009698.1 identified by match to protein family HMM PF00437; match to protein family HMM PF05157; general secretion pathway protein E 1959349 5400161 CLC_1853 Clostridium botulinum A str. Hall general secretion pathway protein E YP_001387708.1 1957820 R 441771 CDS YP_001387710.1 153936505 5398465 complement(1959722..1960795) 1 NC_009698.1 lipoprotein 1960795 5398465 CLC_1855 Clostridium botulinum A str. Hall lipoprotein YP_001387710.1 1959722 R 441771 CDS YP_001387711.1 153935384 5400297 complement(1960796..1961617) 1 NC_009698.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1961617 dapF 5400297 dapF Clostridium botulinum A str. Hall diaminopimelate epimerase YP_001387711.1 1960796 R 441771 CDS YP_001387712.1 153937687 5398505 1961871..1963601 1 NC_009698.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin-binding protein 1963601 5398505 CLC_1857 Clostridium botulinum A str. Hall fibronectin-binding protein YP_001387712.1 1961871 D 441771 CDS YP_001387713.1 153935153 5400860 1963670..1964410 1 NC_009698.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1964410 truA-1 5400860 truA-1 Clostridium botulinum A str. Hall tRNA pseudouridine synthase A YP_001387713.1 1963670 D 441771 CDS YP_001387714.1 153934951 5401712 complement(1964687..1964914) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1964914 5401712 CLC_1859 Clostridium botulinum A str. Hall hypothetical protein YP_001387714.1 1964687 R 441771 CDS YP_001387715.1 153934719 5399773 complement(1964950..1965327) 1 NC_009698.1 identified by match to protein family HMM PF01230; HIT family protein 1965327 5399773 CLC_1860 Clostridium botulinum A str. Hall HIT family protein YP_001387715.1 1964950 R 441771 CDS YP_001387716.1 153937651 5400624 1965838..1967241 1 NC_009698.1 identified by match to protein family HMM PF00282; match to protein family HMM TIGR01788; glutamate decarboxylase 1967241 5400624 CLC_1861 Clostridium botulinum A str. Hall glutamate decarboxylase YP_001387716.1 1965838 D 441771 CDS YP_001387717.1 153936659 5399563 complement(1967674..1968015) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 1968015 5399563 CLC_1862 Clostridium botulinum A str. Hall hypothetical protein YP_001387717.1 1967674 R 441771 CDS YP_001387718.1 153937193 5401663 complement(1968520..1970229) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1970229 5401663 CLC_1863 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387718.1 1968520 R 441771 CDS YP_001387719.1 153934752 5400073 complement(1970699..1972273) 1 NC_009698.1 identified by match to protein family HMM PF03415; match to protein family HMM TIGR02806; clostripain 1972273 cloSI 5400073 cloSI Clostridium botulinum A str. Hall clostripain YP_001387719.1 1970699 R 441771 CDS YP_001387720.1 153936951 5400923 1972753..1973409 1 NC_009698.1 hypothetical protein 1973409 5400923 CLC_1865 Clostridium botulinum A str. Hall hypothetical protein YP_001387720.1 1972753 D 441771 CDS YP_001387721.1 153935275 5399003 1973411..1974112 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1974112 5399003 CLC_1866 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387721.1 1973411 D 441771 CDS YP_001387722.1 153935269 5400204 1974102..1976015 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 1976015 5400204 CLC_1867 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387722.1 1974102 D 441771 CDS YP_001387723.1 153937534 5399299 complement(1976186..1976659) 1 NC_009698.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1976659 msrA 5399299 msrA Clostridium botulinum A str. Hall methionine sulfoxide reductase A YP_001387723.1 1976186 R 441771 CDS YP_001387724.1 153936794 5399202 1977049..1977840 1 NC_009698.1 identified by match to protein family HMM PF00072; response regulator 1977840 5399202 CLC_1869 Clostridium botulinum A str. Hall response regulator YP_001387724.1 1977049 D 441771 CDS YP_001387725.1 153934767 5398995 complement(1978000..1979463) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1979463 5398995 CLC_1870 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387725.1 1978000 R 441771 CDS YP_001387726.1 153934696 5401032 complement(1979460..1980146) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1980146 5401032 CLC_1871 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387726.1 1979460 R 441771 CDS YP_001387727.2 532643391 5398555 complement(1980429..1981205) 1 NC_009698.1 membrane protein 1981205 5398555 CLC_1872 Clostridium botulinum A str. Hall membrane protein YP_001387727.2 1980429 R 441771 CDS YP_001387728.1 153937515 5401173 complement(1981361..1982212) 1 NC_009698.1 ABC transporter permease 1982212 5401173 CLC_1873 Clostridium botulinum A str. Hall ABC transporter permease YP_001387728.1 1981361 R 441771 CDS YP_001387729.1 153936905 5400370 complement(1982212..1982955) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1982955 5400370 CLC_1874 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387729.1 1982212 R 441771 CDS YP_001387731.1 153936262 5399078 complement(1983545..1985407) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1985407 5399078 CLC_1876 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387731.1 1983545 R 441771 CDS YP_001387732.1 153936008 5401151 complement(1985404..1987731) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 1987731 5401151 CLC_1877 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387732.1 1985404 R 441771 CDS YP_001387733.1 153935526 5400348 1988135..1988578 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 1988578 5400348 CLC_1878 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001387733.1 1988135 D 441771 CDS YP_001387734.1 153937555 5398684 complement(1988890..1989573) 1 NC_009698.1 identified by match to protein family HMM PF00899; molybdopterin biosynthesis protein MoeB 1989573 moeB 5398684 moeB Clostridium botulinum A str. Hall molybdopterin biosynthesis protein MoeB YP_001387734.1 1988890 R 441771 CDS YP_001387735.1 153936804 5398921 complement(1989575..1989802) 1 NC_009698.1 identified by match to protein family HMM PF02597; molybdopterin converting factor subunit 1 1989802 moaD 5398921 moaD Clostridium botulinum A str. Hall molybdopterin converting factor subunit 1 YP_001387735.1 1989575 R 441771 CDS YP_001387736.1 153936826 5400593 complement(1989955..1991772) 1 NC_009698.1 identified by match to protein family HMM PF01314; match to protein family HMM PF02730; aldehyde ferredoxin oxidoreductase 1991772 aor 5400593 aor Clostridium botulinum A str. Hall aldehyde ferredoxin oxidoreductase YP_001387736.1 1989955 R 441771 CDS YP_001387737.1 153935637 5398823 complement(1992181..1994076) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR00229; aor transcriptional regulator 1994076 aorR 5398823 aorR Clostridium botulinum A str. Hall aor transcriptional regulator YP_001387737.1 1992181 R 441771 CDS YP_001387738.1 153934901 5399127 complement(1994126..1994566) 1 NC_009698.1 identified by match to protein family HMM PF03473; MOSC domain-containing protein 1994566 5399127 CLC_1883 Clostridium botulinum A str. Hall MOSC domain-containing protein YP_001387738.1 1994126 R 441771 CDS YP_001387739.1 153937145 5399881 complement(1994568..1995047) 1 NC_009698.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1995047 moaC 5399881 moaC Clostridium botulinum A str. Hall molybdenum cofactor biosynthesis protein MoaC YP_001387739.1 1994568 R 441771 CDS YP_001387740.1 153937083 5400261 complement(1995051..1996010) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A 1996010 moaA 5400261 moaA Clostridium botulinum A str. Hall molybdenum cofactor biosynthesis protein A YP_001387740.1 1995051 R 441771 CDS YP_001387741.1 153935632 5398623 complement(1996069..1997973) 1 NC_009698.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; LysR family transcriptional regulator 1997973 5398623 CLC_1886 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001387741.1 1996069 R 441771 CDS YP_001387742.1 153935520 5398962 complement(1997985..1999211) 1 NC_009698.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme MoeA 1999211 moeA 5398962 moeA Clostridium botulinum A str. Hall molybdopterin biosynthesis enzyme MoeA YP_001387742.1 1997985 R 441771 CDS YP_001387743.1 153934484 5400516 complement(1999235..1999723) 1 NC_009698.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdopterin biosynthesis enzyme Mog 1999723 mog 5400516 mog Clostridium botulinum A str. Hall molybdopterin biosynthesis enzyme Mog YP_001387743.1 1999235 R 441771 CDS YP_001387744.1 153937873 5401463 complement(1999818..2000510) 1 NC_009698.1 identified by match to protein family HMM PF00005; tungstate ABC transporter ATP-binding protein 2000510 tupC 5401463 tupC Clostridium botulinum A str. Hall tungstate ABC transporter ATP-binding protein YP_001387744.1 1999818 R 441771 CDS YP_001387745.1 153936271 5401608 complement(2000507..2001178) 1 NC_009698.1 identified by match to protein family HMM PF00528; tungstate ABC transporter permease 2001178 tupB 5401608 tupB Clostridium botulinum A str. Hall tungstate ABC transporter permease YP_001387745.1 2000507 R 441771 CDS YP_001387746.1 153935876 5400227 complement(2001187..2002038) 1 NC_009698.1 identified by match to protein family HMM PF01547; tungstate ABC transporter tungstate-binding protein 2002038 5400227 CLC_1891 Clostridium botulinum A str. Hall tungstate ABC transporter tungstate-binding protein YP_001387746.1 2001187 R 441771 CDS YP_001387747.1 153935174 5400821 complement(2002257..2003579) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2003579 5400821 CLC_1892 Clostridium botulinum A str. Hall MATE efflux family protein YP_001387747.1 2002257 R 441771 CDS YP_001387748.1 153936512 5398264 complement(2003579..2003776) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2003776 5398264 CLC_1893 Clostridium botulinum A str. Hall hypothetical protein YP_001387748.1 2003579 R 441771 CDS YP_001387749.1 153936631 5401483 complement(2004017..2004661) 1 NC_009698.1 identified by match to protein family HMM PF09335; hypothetical protein 2004661 5401483 CLC_1894 Clostridium botulinum A str. Hall hypothetical protein YP_001387749.1 2004017 R 441771 CDS YP_001387750.1 153935751 5399424 complement(2004983..2005654) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2005654 5399424 CLC_1895 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387750.1 2004983 R 441771 CDS YP_001387751.1 153935272 5399580 complement(2005669..2007132) 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 2007132 5399580 CLC_1896 Clostridium botulinum A str. Hall ABC transporter permease YP_001387751.1 2005669 R 441771 CDS YP_001387752.1 153937269 5399959 2007468..2007611 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2007611 5399959 CLC_1897 Clostridium botulinum A str. Hall hypothetical protein YP_001387752.1 2007468 D 441771 CDS YP_001387753.1 153936381 5399205 complement(2007931..2009688) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 2009688 5399205 CLC_1898 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387753.1 2007931 R 441771 CDS YP_001387754.1 153935809 5400440 complement(2009685..2011415) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 2011415 5400440 CLC_1899 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001387754.1 2009685 R 441771 CDS YP_001387755.1 153934854 5398392 2011530..2012351 1 NC_009698.1 identified by match to protein family HMM PF00376; ABC transporter 2012351 5398392 CLC_1900 Clostridium botulinum A str. Hall ABC transporter YP_001387755.1 2011530 D 441771 CDS YP_001387756.1 153936889 5399972 2012770..2013396 1 NC_009698.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 2013396 5399972 CLC_1901 Clostridium botulinum A str. Hall NADPH-dependent FMN reductase YP_001387756.1 2012770 D 441771 CDS YP_001387757.1 153935410 5400243 2014690..2015688 1 NC_009698.1 identified by match to protein family HMM PF00560; internalin 2015688 5400243 CLC_1902 Clostridium botulinum A str. Hall internalin YP_001387757.1 2014690 D 441771 CDS YP_001387758.1 153937836 5398987 2015710..2017758 1 NC_009698.1 identified by match to protein family HMM PF02839; match to protein family HMM TIGR03296; carbohydrate binding protein 2017758 5398987 CLC_1903 Clostridium botulinum A str. Hall carbohydrate binding protein YP_001387758.1 2015710 D 441771 CDS YP_001387759.1 153934967 5399466 complement(2017920..2020010) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator 2020010 5399466 CLC_1904 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001387759.1 2017920 R 441771 CDS YP_001387760.1 153935720 5398982 complement(2020373..2020627) 1 NC_009698.1 hypothetical protein 2020627 5398982 CLC_1905 Clostridium botulinum A str. Hall hypothetical protein YP_001387760.1 2020373 R 441771 CDS YP_001387761.1 153936523 5398300 complement(2020640..2021008) 1 NC_009698.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2021008 5398300 CLC_1906 Clostridium botulinum A str. Hall endoribonuclease L-PSP YP_001387761.1 2020640 R 441771 CDS YP_001387762.1 153937243 5399049 complement(2021050..2022345) 1 NC_009698.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 2022345 5399049 CLC_1907 Clostridium botulinum A str. Hall sodium:dicarboxylate symporter family protein YP_001387762.1 2021050 R 441771 CDS YP_001387763.1 153936143 5401589 complement(2022367..2023536) 1 NC_009698.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 2023536 5401589 CLC_1908 Clostridium botulinum A str. Hall aminotransferase, classes I and II YP_001387763.1 2022367 R 441771 CDS YP_001387764.1 153935143 5399793 2023850..2025142 1 NC_009698.1 identified by match to protein family HMM PF06354; hypothetical protein 2025142 5399793 CLC_1909 Clostridium botulinum A str. Hall hypothetical protein YP_001387764.1 2023850 D 441771 CDS YP_001387766.1 153937679 5399713 2026500..2028719 1 NC_009698.1 identified by match to protein family HMM TIGR03296; hypothetical protein 2028719 5399713 CLC_1912 Clostridium botulinum A str. Hall hypothetical protein YP_001387766.1 2026500 D 441771 CDS YP_001387767.1 153936594 5398992 complement(2028920..2030359) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2030359 5398992 CLC_1913 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387767.1 2028920 R 441771 CDS YP_001387768.1 153937795 5401625 complement(2030349..2031014) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2031014 5401625 CLC_1914 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387768.1 2030349 R 441771 CDS YP_001387770.1 153935854 5398271 complement(2031514..2032329) 1 NC_009698.1 identified by match to protein family HMM PF02596; hypothetical protein 2032329 5398271 CLC_1916 Clostridium botulinum A str. Hall hypothetical protein YP_001387770.1 2031514 R 441771 CDS YP_001387771.1 153936358 5399741 complement(2032355..2033080) 1 NC_009698.1 identified by match to protein family HMM PF02361; ABC transporter permease 2033080 5399741 CLC_1917 Clostridium botulinum A str. Hall ABC transporter permease YP_001387771.1 2032355 R 441771 CDS YP_001387772.1 153937393 5400133 complement(2033125..2034558) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2034558 5400133 CLC_1918 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387772.1 2033125 R 441771 CDS YP_001387773.1 153936319 5401837 complement(2034561..2035127) 1 NC_009698.1 ABC transporter permease 2035127 5401837 CLC_1919 Clostridium botulinum A str. Hall ABC transporter permease YP_001387773.1 2034561 R 441771 CDS YP_001387774.1 153937081 5399985 complement(2035288..2036355) 1 NC_009698.1 identified by match to protein family HMM PF01168; alanine racemase 2036355 5399985 CLC_1920 Clostridium botulinum A str. Hall alanine racemase YP_001387774.1 2035288 R 441771 CDS YP_001387775.1 153937870 5400839 2036744..2037829 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2037829 5400839 CLC_1921 Clostridium botulinum A str. Hall spore germination protein YP_001387775.1 2036744 D 441771 CDS YP_001387776.1 153934905 5401355 2037912..2039414 1 NC_009698.1 identified by match to protein family HMM PF03323; spore germination protein 2039414 5401355 CLC_1922 Clostridium botulinum A str. Hall spore germination protein YP_001387776.1 2037912 D 441771 CDS YP_001387777.1 153935853 5398838 2039404..2040492 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2040492 5398838 CLC_1923 Clostridium botulinum A str. Hall spore germination protein YP_001387777.1 2039404 D 441771 CDS YP_001387778.1 153934686 5400265 2040482..2041594 1 NC_009698.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887; Ger(x)C family germination protein 2041594 5400265 CLC_1924 Clostridium botulinum A str. Hall Ger(x)C family germination protein YP_001387778.1 2040482 D 441771 CDS YP_001387779.1 153935355 5400132 2041636..2042745 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2042745 5400132 CLC_1925 Clostridium botulinum A str. Hall spore germination protein YP_001387779.1 2041636 D 441771 CDS YP_001387780.1 153934603 5399433 complement(2042773..2043201) 1 NC_009698.1 identified by match to protein family HMM TIGR01909; hypothetical protein 2043201 5399433 CLC_1926 Clostridium botulinum A str. Hall hypothetical protein YP_001387780.1 2042773 R 441771 CDS YP_001387781.1 153936784 5400184 2043496..2043828 1 NC_009698.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; 4-carboxymuconolactone decarboxylase 2043828 pcaC-2 5400184 pcaC-2 Clostridium botulinum A str. Hall 4-carboxymuconolactone decarboxylase YP_001387781.1 2043496 D 441771 CDS YP_001387782.1 153936014 5401243 2043841..2044821 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2044821 5401243 CLC_1928 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001387782.1 2043841 D 441771 CDS YP_001387783.1 153934872 5398955 2045002..2045757 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 2045757 5398955 CLC_1929 Clostridium botulinum A str. Hall hypothetical protein YP_001387783.1 2045002 D 441771 CDS YP_001387784.1 153937544 5401831 complement(2045975..2047405) 1 NC_009698.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 2047405 5401831 CLC_1930 Clostridium botulinum A str. Hall potassium/proton antiporter YP_001387784.1 2045975 R 441771 CDS YP_001387785.1 153936722 5399100 complement(2048003..2049883) 1 NC_009698.1 molecular chaperone; heat shock protein 90 2049883 hsp90 5399100 hsp90 Clostridium botulinum A str. Hall heat shock protein 90 YP_001387785.1 2048003 R 441771 CDS YP_001387786.1 153935795 5401821 2050428..2051993 1 NC_009698.1 identified by match to protein family HMM PF00488; MutS domain-containing protein 2051993 5401821 CLC_1932 Clostridium botulinum A str. Hall MutS domain-containing protein YP_001387786.1 2050428 D 441771 CDS YP_001387787.1 153936138 5400054 2052475..2053902 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992; PTS system, trehalose-specific IIBC component 2053902 treP 5400054 treP Clostridium botulinum A str. Hall PTS system, trehalose-specific IIBC component YP_001387787.1 2052475 D 441771 CDS YP_001387788.1 153936849 5398785 2053984..2055651 1 NC_009698.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403; alpha,alpha-phosphotrehalase 2055651 treC 5398785 treC Clostridium botulinum A str. Hall alpha,alpha-phosphotrehalase YP_001387788.1 2053984 D 441771 CDS YP_001387789.1 153937812 5401339 2055684..2056394 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404; trehalose operon repressor 2056394 treR 5401339 treR Clostridium botulinum A str. Hall trehalose operon repressor YP_001387789.1 2055684 D 441771 CDS YP_001387790.1 153936834 5401723 complement(2056756..2057196) 1 NC_009698.1 identified by match to protein family HMM PF00359; match to protein family HMM TIGR00848; PTS system fructose family transporter subunit IIA 2057196 5401723 CLC_1936 Clostridium botulinum A str. Hall PTS system fructose family transporter subunit IIA YP_001387790.1 2056756 R 441771 CDS YP_001387791.1 153935815 5401747 complement(2057469..2058866) 1 NC_009698.1 identified by match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR01427; PTS system fructose family transporter subunit IIBC 2058866 5401747 CLC_1937 Clostridium botulinum A str. Hall PTS system fructose family transporter subunit IIBC YP_001387791.1 2057469 R 441771 CDS YP_001387792.1 153937463 5399632 complement(2058867..2059790) 1 NC_009698.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; PfkB family kinase 2059790 5399632 CLC_1938 Clostridium botulinum A str. Hall PfkB family kinase YP_001387792.1 2058867 R 441771 CDS YP_001387793.1 153936491 5399577 complement(2059810..2060670) 1 NC_009698.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in enteric bacteria there are two D-tagatose 1,6-bisphosphate-specific aldolases: KbaY (also called AgaY), involved in catabolism of N-acetyl-galactosamine and D-galactosamine, and GatY which is part of the galactitol catabolism pathway; tagatose-bisphosphate aldolase 2060670 gatY 5399577 gatY Clostridium botulinum A str. Hall tagatose-bisphosphate aldolase YP_001387793.1 2059810 R 441771 CDS YP_001387794.1 153935700 5400906 complement(2060870..2061607) 1 NC_009698.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418; transcriptional regulator 2061607 5400906 CLC_1940 Clostridium botulinum A str. Hall transcriptional regulator YP_001387794.1 2060870 R 441771 CDS YP_008472689.1 532643399 5401823 complement(2061724..2062098) 1 NC_009698.1 hypothetical protein 2062098 5401823 CLC_1941 Clostridium botulinum A str. Hall hypothetical protein YP_008472689.1 2061724 R 441771 CDS YP_001387795.1 153937199 5401206 2062460..2062855 1 NC_009698.1 identified by match to protein family HMM PF01042; endoribonuclease L-PSP 2062855 5401206 CLC_1942 Clostridium botulinum A str. Hall endoribonuclease L-PSP YP_001387795.1 2062460 D 441771 CDS YP_001387796.1 153937493 5399655 complement(2063203..2064072) 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2064072 5399655 CLC_1943 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001387796.1 2063203 R 441771 CDS YP_001387798.1 153937731 5399875 2064648..2065739 1 NC_009698.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 2065739 gldA 5399875 gldA Clostridium botulinum A str. Hall glycerol dehydrogenase YP_001387798.1 2064648 D 441771 CDS YP_001387800.1 153935923 5401697 complement(2066231..2067880) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2067880 5401697 CLC_1947 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001387800.1 2066231 R 441771 CDS YP_001387801.1 153937367 5398827 complement(2067874..2067987) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2067987 5398827 CLC_1948 Clostridium botulinum A str. Hall hypothetical protein YP_001387801.1 2067874 R 441771 CDS YP_001387802.1 153935732 5399936 complement(2068052..2069113) 1 NC_009698.1 identified by match to protein family HMM PF01168; alanine racemase 2069113 5399936 CLC_1949 Clostridium botulinum A str. Hall alanine racemase YP_001387802.1 2068052 R 441771 CDS YP_001387803.1 153934534 5399430 complement(2069470..2069748) 1 NC_009698.1 hypothetical protein 2069748 5399430 CLC_1950 Clostridium botulinum A str. Hall hypothetical protein YP_001387803.1 2069470 R 441771 CDS YP_001387804.1 153937708 5401425 2070218..2071282 1 NC_009698.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase 2071282 5401425 CLC_1951 Clostridium botulinum A str. Hall oxidoreductase YP_001387804.1 2070218 D 441771 CDS YP_001387805.1 153936958 5400482 complement(2071403..2071948) 1 NC_009698.1 Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase 2071948 5400482 CLC_1952 Clostridium botulinum A str. Hall adenine phosphoribosyltransferase YP_001387805.1 2071403 R 441771 CDS YP_001387806.1 153936974 5401678 complement(2071964..2073028) 1 NC_009698.1 identified by match to protein family HMM PF00860; xanthine/uracil permease 2073028 5401678 CLC_1953 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001387806.1 2071964 R 441771 CDS YP_001387807.1 153936770 5398251 complement(2073471..2074019) 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2074019 5398251 CLC_1954 Clostridium botulinum A str. Hall diguanylate cyclase YP_001387807.1 2073471 R 441771 CDS YP_001387808.1 153935029 5400611 complement(2074253..2075557) 1 NC_009698.1 identified by match to protein family HMM PF06354; hypothetical protein 2075557 5400611 CLC_1955 Clostridium botulinum A str. Hall hypothetical protein YP_001387808.1 2074253 R 441771 CDS YP_001387809.1 153937730 5400005 complement(2075817..2077592) 1 NC_009698.1 identified by match to protein family HMM PF00158; sigma-54 dependent transcriptional regulator 2077592 5400005 CLC_1956 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001387809.1 2075817 R 441771 CDS YP_001387810.1 153936987 5398860 2078058..2079188 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 2079188 5398860 CLC_1957 Clostridium botulinum A str. Hall DEAD/DEAH box helicase YP_001387810.1 2078058 D 441771 CDS YP_001387811.1 153936310 5401651 2079508..2080305 1 NC_009698.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909; SCP-like extracellular protein 2080305 5401651 CLC_1958 Clostridium botulinum A str. Hall SCP-like extracellular protein YP_001387811.1 2079508 D 441771 CDS YP_001387812.1 153934654 5401390 complement(2080408..2081754) 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2081754 5401390 CLC_1959 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387812.1 2080408 R 441771 CDS YP_001387813.1 153937345 5400202 2081903..2082811 1 NC_009698.1 identified by match to protein family HMM PF00892; hypothetical protein 2082811 5400202 CLC_1960 Clostridium botulinum A str. Hall hypothetical protein YP_001387813.1 2081903 D 441771 CDS YP_001387814.1 153936516 5400039 complement(2083109..2084260) 1 NC_009698.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2084260 aspB-2 5400039 aspB-2 Clostridium botulinum A str. Hall aspartate aminotransferase YP_001387814.1 2083109 R 441771 CDS YP_001387815.1 153935816 5399676 complement(2084280..2085002) 1 NC_009698.1 identified by match to protein family HMM PF00005; polar amino acid ABC transporter ATP-binding protein 2085002 5399676 CLC_1962 Clostridium botulinum A str. Hall polar amino acid ABC transporter ATP-binding protein YP_001387815.1 2084280 R 441771 CDS YP_008472690.1 532643400 16691481 complement(2084989..2085675) 1 NC_009698.1 amino acid ABC transporter permease 2085675 16691481 CLC_1963A Clostridium botulinum A str. Hall amino acid ABC transporter permease YP_008472690.1 2084989 R 441771 CDS YP_008472691.1 532643401 16691472 complement(2085745..2086563) 1 NC_009698.1 amino acid ABC transporter 2086563 16691472 CLC_1963B Clostridium botulinum A str. Hall amino acid ABC transporter YP_008472691.1 2085745 R 441771 CDS YP_001387816.1 153936887 5399578 complement(2086649..2087929) 1 NC_009698.1 hypothetical protein 2087929 5399578 CLC_1964 Clostridium botulinum A str. Hall hypothetical protein YP_001387816.1 2086649 R 441771 CDS YP_001387817.1 153936280 5400916 complement(2088294..2089433) 1 NC_009698.1 identified by match to protein family HMM PF00266; class V aminotransferase 2089433 5400916 CLC_1965 Clostridium botulinum A str. Hall class V aminotransferase YP_001387817.1 2088294 R 441771 CDS YP_001387818.1 153934927 5398985 complement(2089546..2090211) 1 NC_009698.1 identified by match to protein family HMM PF00302; chloramphenicol acetyltransferase 2090211 cat-2 5398985 cat-2 Clostridium botulinum A str. Hall chloramphenicol acetyltransferase YP_001387818.1 2089546 R 441771 CDS YP_001387819.1 153936047 5399500 complement(2090706..2090918) 1 NC_009698.1 hypothetical protein 2090918 5399500 CLC_1967 Clostridium botulinum A str. Hall hypothetical protein YP_001387819.1 2090706 R 441771 CDS YP_001387821.1 153937548 5398234 complement(2091179..2091400) 1 NC_009698.1 hypothetical protein 2091400 5398234 CLC_1969 Clostridium botulinum A str. Hall hypothetical protein YP_001387821.1 2091179 R 441771 CDS YP_008472692.1 532643412 5398969 complement(2091538..2091789) 1 NC_009698.1 helicase 2091789 5398969 CLC_1970 Clostridium botulinum A str. Hall helicase YP_008472692.1 2091538 R 441771 CDS YP_001387822.1 153935470 5399381 complement(2091973..2092689) 1 NC_009698.1 hypothetical protein 2092689 5399381 CLC_1971 Clostridium botulinum A str. Hall hypothetical protein YP_001387822.1 2091973 R 441771 CDS YP_001387823.1 153936419 5401414 complement(2092914..2093069) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2093069 5401414 CLC_1972 Clostridium botulinum A str. Hall DNA-binding protein YP_001387823.1 2092914 R 441771 CDS YP_001387825.1 153935050 5399598 complement(2093479..2094828) 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2094828 5399598 CLC_1974 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001387825.1 2093479 R 441771 CDS YP_001387826.1 153935824 5401701 complement(2095139..2096485) 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2096485 5401701 CLC_1975 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001387826.1 2095139 R 441771 CDS YP_001387827.1 153937353 5400155 2096994..2098082 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; proline dipeptidase 2098082 pepQ 5400155 pepQ Clostridium botulinum A str. Hall proline dipeptidase YP_001387827.1 2096994 D 441771 CDS YP_001387828.1 153934855 5400313 2098164..2099045 1 NC_009698.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01250; proline iminopeptidase 2099045 pepIP 5400313 pepIP Clostridium botulinum A str. Hall proline iminopeptidase YP_001387828.1 2098164 D 441771 CDS YP_001387829.1 153935564 5400165 complement(2099195..2099320) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2099320 5400165 CLC_1978 Clostridium botulinum A str. Hall hypothetical protein YP_001387829.1 2099195 R 441771 CDS YP_001387830.1 153936360 5400244 complement(2099337..2100830) 1 NC_009698.1 identified by match to protein family HMM PF00209; sodium:neurotransmitter symporter family protein 2100830 5400244 CLC_1979 Clostridium botulinum A str. Hall sodium:neurotransmitter symporter family protein YP_001387830.1 2099337 R 441771 CDS YP_001387831.1 153934846 5401385 complement(2101239..2102633) 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2102633 5401385 CLC_1980 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387831.1 2101239 R 441771 CDS YP_001387832.1 153935543 5398356 2102751..2103530 1 NC_009698.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 2103530 5398356 CLC_1981 Clostridium botulinum A str. Hall PhzF family phenazine biosynthesis protein YP_001387832.1 2102751 D 441771 CDS YP_008472693.1 532643402 5399159 2103615..2104016 1 NC_009698.1 LysR family transcriptional regulator 2104016 5399159 CLC_1982 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_008472693.1 2103615 D 441771 CDS YP_001387833.1 153934795 5399967 complement(2104126..2104773) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2104773 5399967 CLC_1983 Clostridium botulinum A str. Hall hypothetical protein YP_001387833.1 2104126 R 441771 CDS YP_001387834.1 153936240 5399857 complement(2105006..2107483) 1 NC_009698.1 thrombospondin type 3 repeat-containing protein 2107483 5399857 CLC_1984 Clostridium botulinum A str. Hall thrombospondin type 3 repeat-containing protein YP_001387834.1 2105006 R 441771 CDS YP_001387835.1 153935581 5399696 complement(2107956..2108456) 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 2108456 5399696 CLC_1985 Clostridium botulinum A str. Hall nitroreductase YP_001387835.1 2107956 R 441771 CDS YP_001387836.1 153936064 5398276 complement(2108561..2110504) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2110504 5398276 CLC_1986 Clostridium botulinum A str. Hall hypothetical protein YP_001387836.1 2108561 R 441771 CDS YP_001387837.1 153935223 5398417 complement(2110519..2111754) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2111754 5398417 CLC_1987 Clostridium botulinum A str. Hall hypothetical protein YP_001387837.1 2110519 R 441771 CDS YP_001387838.1 153936963 5398641 complement(2111751..2113862) 1 NC_009698.1 hypothetical protein 2113862 5398641 CLC_1988 Clostridium botulinum A str. Hall hypothetical protein YP_001387838.1 2111751 R 441771 CDS YP_001387839.1 153936035 5398365 complement(2113984..2115777) 1 NC_009698.1 similar to streptococcal 67 kDa myosin-cross-reactive antigen family protein; in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; hypothetical protein 2115777 5398365 CLC_1989 Clostridium botulinum A str. Hall hypothetical protein YP_001387839.1 2113984 R 441771 CDS YP_001387840.1 153935026 5398282 complement(2116081..2116650) 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2116650 5398282 CLC_1990 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001387840.1 2116081 R 441771 CDS YP_003204971.1 258676994 5399330 complement(2116826..2117269) 1 NC_009698.1 hypothetical protein 2117269 5399330 CLC_1991 Clostridium botulinum A str. Hall hypothetical protein YP_003204971.1 2116826 R 441771 CDS YP_008472694.1 532643408 5401804 2118236..2119729 1 NC_009698.1 glycosyl transferase 2119729 5401804 CLC_1994 Clostridium botulinum A str. Hall glycosyl transferase YP_008472694.1 2118236 D 441771 CDS YP_001387843.1 153937161 5399821 complement(2120189..2121250) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2121250 5399821 CLC_1995 Clostridium botulinum A str. Hall hypothetical protein YP_001387843.1 2120189 R 441771 CDS YP_001387844.1 153935533 5399614 complement(2121294..2121938) 1 NC_009698.1 identified by match to protein family HMM PF00132; hexapeptide repeat-containing transferase 2121938 5399614 CLC_1996 Clostridium botulinum A str. Hall hexapeptide repeat-containing transferase YP_001387844.1 2121294 R 441771 CDS YP_001387845.1 153936615 5400679 complement(2122030..2123169) 1 NC_009698.1 identified by match to protein family HMM PF01041; aminotransferase 2123169 5400679 CLC_1997 Clostridium botulinum A str. Hall aminotransferase YP_001387845.1 2122030 R 441771 CDS YP_001387846.1 153934964 5398774 complement(2123215..2124114) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2124114 5398774 CLC_1998 Clostridium botulinum A str. Hall hypothetical protein YP_001387846.1 2123215 R 441771 CDS YP_001387847.1 153935912 5401228 2124316..2125377 1 NC_009698.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208; glucose-1-phosphate thymidylyltransferase 2125377 5401228 CLC_1999 Clostridium botulinum A str. Hall glucose-1-phosphate thymidylyltransferase YP_001387847.1 2124316 D 441771 CDS YP_001387848.1 153935869 5400078 2125419..2126399 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 2126399 rfbB 5400078 rfbB Clostridium botulinum A str. Hall dTDP-glucose 4,6-dehydratase YP_001387848.1 2125419 D 441771 CDS YP_001387849.1 153936845 5400500 2126676..2126969 1 NC_009698.1 hypothetical protein 2126969 5400500 CLC_2001 Clostridium botulinum A str. Hall hypothetical protein YP_001387849.1 2126676 D 441771 CDS YP_001387850.1 153937110 5401236 2127220..2127513 1 NC_009698.1 hypothetical protein 2127513 5401236 CLC_2002 Clostridium botulinum A str. Hall hypothetical protein YP_001387850.1 2127220 D 441771 CDS YP_001387852.1 153935469 5400108 complement(2128409..2128558) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2128558 5400108 CLC_2004 Clostridium botulinum A str. Hall hypothetical protein YP_001387852.1 2128409 R 441771 CDS YP_001387853.1 153935169 5401803 complement(2128551..2129840) 1 NC_009698.1 lipase 2129840 5401803 CLC_2005 Clostridium botulinum A str. Hall lipase YP_001387853.1 2128551 R 441771 CDS YP_001387854.1 153937586 5399414 complement(2130691..2131365) 1 NC_009698.1 identified by match to protein family HMM PF04892; vanZF protein 2131365 5399414 CLC_2006 Clostridium botulinum A str. Hall vanZF protein YP_001387854.1 2130691 R 441771 CDS YP_001387855.1 153936660 5400335 complement(2131615..2131881) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2131881 5400335 CLC_2007 Clostridium botulinum A str. Hall hypothetical protein YP_001387855.1 2131615 R 441771 CDS YP_001387856.1 153935748 5398868 complement(2132149..2132790) 1 NC_009698.1 ABC transporter permease 2132790 5398868 CLC_2008 Clostridium botulinum A str. Hall ABC transporter permease YP_001387856.1 2132149 R 441771 CDS YP_001387857.1 153937620 5401788 complement(2132784..2133650) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2133650 5401788 CLC_2009 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387857.1 2132784 R 441771 CDS YP_001387858.1 153937070 5398596 complement(2133650..2134027) 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2134027 5398596 CLC_2010 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387858.1 2133650 R 441771 CDS YP_001387859.1 153936274 5399998 complement(2134655..2135839) 1 NC_009698.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426; glycosyl transferase family protein 2135839 5399998 CLC_2011 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001387859.1 2134655 R 441771 CDS YP_001387860.1 153936323 5400701 complement(2135832..2136137) 1 NC_009698.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2136137 5400701 CLC_2012 Clostridium botulinum A str. Hall AbrB family transcriptional regulator YP_001387860.1 2135832 R 441771 CDS YP_001387861.1 153936967 5400824 complement(2136386..2137183) 1 NC_009698.1 hypothetical protein 2137183 5400824 CLC_2013 Clostridium botulinum A str. Hall hypothetical protein YP_001387861.1 2136386 R 441771 CDS YP_001387862.1 153935042 5398286 complement(2137495..2138760) 1 NC_009698.1 Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 2138760 codA 5398286 codA Clostridium botulinum A str. Hall cytosine deaminase YP_001387862.1 2137495 R 441771 CDS YP_001387863.1 153936526 5399757 complement(2138804..2140075) 1 NC_009698.1 identified by match to protein family HMM PF02133; cytosine permease 2140075 codB 5399757 codB Clostridium botulinum A str. Hall cytosine permease YP_001387863.1 2138804 R 441771 CDS YP_001387864.1 153937366 5400985 complement(2140420..2140551) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2140551 5400985 CLC_2017 Clostridium botulinum A str. Hall hypothetical protein YP_001387864.1 2140420 R 441771 CDS YP_001387867.1 153934914 5399261 complement(2142749..2144212) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2144212 5399261 CLC_2020 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387867.1 2142749 R 441771 CDS YP_001387868.1 153936110 5400239 complement(2144226..2144951) 1 NC_009698.1 identified by match to protein family HMM PF02361; ABC transporter permease 2144951 5400239 CLC_2021 Clostridium botulinum A str. Hall ABC transporter permease YP_001387868.1 2144226 R 441771 CDS YP_001387869.1 153936704 5401533 complement(2144948..2145559) 1 NC_009698.1 identified by match to protein family HMM TIGR02185; hypothetical protein 2145559 5401533 CLC_2022 Clostridium botulinum A str. Hall hypothetical protein YP_001387869.1 2144948 R 441771 CDS YP_001387870.1 153937862 5400833 2145779..2146741 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2146741 5400833 CLC_2023 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387870.1 2145779 D 441771 CDS YP_001387871.1 153934991 5399112 complement(2147111..2147593) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 2147593 5399112 CLC_2024 Clostridium botulinum A str. Hall acetyltransferase YP_001387871.1 2147111 R 441771 CDS YP_001387872.1 153935900 5400762 complement(2148083..2148604) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2148604 5400762 CLC_2025 Clostridium botulinum A str. Hall hypothetical protein YP_001387872.1 2148083 R 441771 CDS YP_001387873.1 153936428 5400308 complement(2148878..2149693) 1 NC_009698.1 hypothetical protein 2149693 5400308 CLC_2026 Clostridium botulinum A str. Hall hypothetical protein YP_001387873.1 2148878 R 441771 CDS YP_001387874.1 153937421 5400400 2149875..2150273 1 NC_009698.1 identified by match to protein family HMM PF00293; mutator mutT protein 2150273 5400400 CLC_2027 Clostridium botulinum A str. Hall mutator mutT protein YP_001387874.1 2149875 D 441771 CDS YP_001387875.1 153936325 5398586 complement(2150284..2153190) 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; restriction/helicase domain-containing protein 2153190 5398586 CLC_2028 Clostridium botulinum A str. Hall restriction/helicase domain-containing protein YP_001387875.1 2150284 R 441771 CDS YP_001387876.1 153937419 5400980 complement(2153248..2153364) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2153364 5400980 CLC_2029 Clostridium botulinum A str. Hall hypothetical protein YP_001387876.1 2153248 R 441771 CDS YP_001387877.1 153936158 5400703 complement(2153763..2153891) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2153891 5400703 CLC_2030 Clostridium botulinum A str. Hall hypothetical protein YP_001387877.1 2153763 R 441771 CDS YP_001387878.1 153935329 5400978 complement(2154186..2155967) 1 NC_009698.1 identified by match to protein family HMM PF00580; ATP-dependent DNA helicase UvrD 2155967 5400978 CLC_2031 Clostridium botulinum A str. Hall ATP-dependent DNA helicase UvrD YP_001387878.1 2154186 R 441771 CDS YP_001387879.1 153937844 5400816 complement(2155960..2157999) 1 NC_009698.1 hypothetical protein 2157999 5400816 CLC_2032 Clostridium botulinum A str. Hall hypothetical protein YP_001387879.1 2155960 R 441771 CDS YP_001387880.1 153936927 5400008 complement(2158405..2158626) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2158626 5400008 CLC_2033 Clostridium botulinum A str. Hall hypothetical protein YP_001387880.1 2158405 R 441771 CDS YP_001387881.1 153935928 5399192 complement(2158690..2158815) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2158815 5399192 CLC_2034 Clostridium botulinum A str. Hall hypothetical protein YP_001387881.1 2158690 R 441771 CDS YP_001387882.1 153934924 5398297 complement(2159071..2159691) 1 NC_009698.1 hypothetical protein 2159691 5398297 CLC_2035 Clostridium botulinum A str. Hall hypothetical protein YP_001387882.1 2159071 R 441771 CDS YP_001387883.1 153935803 5398330 complement(2159939..2160337) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2160337 5398330 CLC_2036 Clostridium botulinum A str. Hall hypothetical protein YP_001387883.1 2159939 R 441771 CDS YP_001387884.1 153937447 5398464 complement(2160355..2161209) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2161209 5398464 CLC_2037 Clostridium botulinum A str. Hall hypothetical protein YP_001387884.1 2160355 R 441771 CDS YP_001387887.1 153937237 5401362 complement(2163023..2163907) 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 2163907 5401362 CLC_2040 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387887.1 2163023 R 441771 CDS YP_001387888.1 153936432 5400454 complement(2163956..2164861) 1 NC_009698.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 2164861 5400454 CLC_2041 Clostridium botulinum A str. Hall alpha/beta hydrolase YP_001387888.1 2163956 R 441771 CDS YP_001387889.1 153935655 5400659 complement(2164982..2165395) 1 NC_009698.1 tetracycline resistance domain-containing protein 2165395 5400659 CLC_2042 Clostridium botulinum A str. Hall tetracycline resistance domain-containing protein YP_001387889.1 2164982 R 441771 CDS YP_001387890.1 153934595 5401046 complement(2165580..2166503) 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 2166503 5401046 CLC_2043 Clostridium botulinum A str. Hall NAD-dependent epimerase/dehydratase YP_001387890.1 2165580 R 441771 CDS YP_001387891.1 153935330 5398712 2166798..2168147 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2168147 5398712 CLC_2044 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001387891.1 2166798 D 441771 CDS YP_001387892.1 153934589 5399603 2168171..2170795 1 NC_009698.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535; glycosyl transferase family protein 2170795 5399603 CLC_2045 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001387892.1 2168171 D 441771 CDS YP_001387893.1 153936842 5400009 complement(2171151..2173106) 1 NC_009698.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03764; match to protein family HMM TIGR00231; tetracycline resistance protein 2173106 5400009 CLC_2046 Clostridium botulinum A str. Hall tetracycline resistance protein YP_001387893.1 2171151 R 441771 CDS YP_001387894.1 153936073 5401318 complement(2173636..2175306) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2175306 5401318 CLC_2047 Clostridium botulinum A str. Hall hypothetical protein YP_001387894.1 2173636 R 441771 CDS YP_001387895.1 153934975 5401189 complement(2175854..2176144) 1 NC_009698.1 identified by match to protein family HMM PF00936; microcompartments family protein 2176144 5401189 CLC_2048 Clostridium botulinum A str. Hall microcompartments family protein YP_001387895.1 2175854 R 441771 CDS YP_001387896.1 153937619 5401755 complement(2176218..2176868) 1 NC_009698.1 identified by match to protein family HMM PF06130; propanediol utilization protein PduL-like protein 2176868 5401755 CLC_2049 Clostridium botulinum A str. Hall propanediol utilization protein PduL-like protein YP_001387896.1 2176218 R 441771 CDS YP_001387897.1 153936261 5400616 complement(2176868..2178466) 1 NC_009698.1 identified by match to protein family HMM TIGR02518; acetaldehyde dehydrogenase 2178466 eutE 5400616 eutE Clostridium botulinum A str. Hall acetaldehyde dehydrogenase YP_001387897.1 2176868 R 441771 CDS YP_001387898.1 153935738 5399997 complement(2178501..2179298) 1 NC_009698.1 identified by match to protein family HMM PF00936; microcompartments family protein 2179298 5399997 CLC_2051 Clostridium botulinum A str. Hall microcompartments family protein YP_001387898.1 2178501 R 441771 CDS YP_001387899.1 153936355 5400347 complement(2179319..2179981) 1 NC_009698.1 identified by match to protein family HMM PF05899; match to protein family HMM PF06249; ethanolamine utilization protein EutQ-like protein 2179981 5400347 CLC_2052 Clostridium botulinum A str. Hall ethanolamine utilization protein EutQ-like protein YP_001387899.1 2179319 R 441771 CDS YP_001387900.1 153936682 5398858 complement(2180180..2180443) 1 NC_009698.1 identified by match to protein family HMM PF03319; polyhedral organelle formation protein 2180443 5398858 CLC_2053 Clostridium botulinum A str. Hall polyhedral organelle formation protein YP_001387900.1 2180180 R 441771 CDS YP_001387901.1 153937644 5401834 complement(2180440..2180742) 1 NC_009698.1 identified by match to protein family HMM PF00936; hypothetical protein 2180742 5401834 CLC_2054 Clostridium botulinum A str. Hall hypothetical protein YP_001387901.1 2180440 R 441771 CDS YP_001387902.1 153934825 5401479 complement(2180820..2181665) 1 NC_009698.1 identified by match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ family protein 2181665 5401479 CLC_2055 Clostridium botulinum A str. Hall ethanolamine utilization protein EutJ family protein YP_001387902.1 2180820 R 441771 CDS YP_001387903.1 153935346 5401639 complement(2181647..2182375) 1 NC_009698.1 hypothetical protein 2182375 5401639 CLC_2056 Clostridium botulinum A str. Hall hypothetical protein YP_001387903.1 2181647 R 441771 CDS YP_001387904.1 153936303 5398892 complement(2182382..2182828) 1 NC_009698.1 EutP/PduV family GTP-binding protein 2182828 5398892 CLC_2057 Clostridium botulinum A str. Hall EutP/PduV family GTP-binding protein YP_001387904.1 2182382 R 441771 CDS YP_001387905.1 153935116 5400794 complement(2182825..2183178) 1 NC_009698.1 identified by match to protein family HMM PF00936; ethanolamine utilization protein EutS-like protein 2183178 5400794 CLC_2058 Clostridium botulinum A str. Hall ethanolamine utilization protein EutS-like protein YP_001387905.1 2182825 R 441771 CDS YP_001387906.1 153935989 5401281 complement(2183218..2184171) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein 2184171 5401281 CLC_2059 Clostridium botulinum A str. Hall glycyl-radical enzyme activating family protein YP_001387906.1 2183218 R 441771 CDS YP_001387907.1 153936671 5400694 complement(2184335..2186875) 1 NC_009698.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase 2186875 5400694 CLC_2060 Clostridium botulinum A str. Hall formate acetyltransferase YP_001387907.1 2184335 R 441771 CDS YP_001387908.1 153937642 5400969 complement(2186925..2188418) 1 NC_009698.1 aldehyde dehydrogenase 2188418 5400969 CLC_2061 Clostridium botulinum A str. Hall aldehyde dehydrogenase YP_001387908.1 2186925 R 441771 CDS YP_001387909.1 153934753 5399772 complement(2188456..2188764) 1 NC_009698.1 identified by match to protein family HMM PF00936; microcompartments family protein 2188764 5399772 CLC_2062 Clostridium botulinum A str. Hall microcompartments family protein YP_001387909.1 2188456 R 441771 CDS YP_001387910.1 153934555 5401637 complement(2188788..2189084) 1 NC_009698.1 identified by match to protein family HMM PF00936; microcompartments family protein 2189084 5401637 CLC_2063 Clostridium botulinum A str. Hall microcompartments family protein YP_001387910.1 2188788 R 441771 CDS YP_001387912.1 153936901 5399384 complement(2189388..2189654) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2189654 5399384 CLC_2065 Clostridium botulinum A str. Hall hypothetical protein YP_001387912.1 2189388 R 441771 CDS YP_001387913.1 153934764 5398797 complement(2189641..2190753) 1 NC_009698.1 hypothetical protein 2190753 5398797 CLC_2066 Clostridium botulinum A str. Hall hypothetical protein YP_001387913.1 2189641 R 441771 CDS YP_001387914.1 153934931 5400475 complement(2191239..2192069) 1 NC_009698.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2192069 5400475 CLC_2067 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001387914.1 2191239 R 441771 CDS YP_001387915.1 153936239 5398552 complement(2192186..2193328) 1 NC_009698.1 identified by match to protein family HMM PF00465; alcohol dehydrogenase 2193328 5398552 CLC_2068 Clostridium botulinum A str. Hall alcohol dehydrogenase YP_001387915.1 2192186 R 441771 CDS YP_001387916.1 153935727 5400755 2193841..2195142 1 NC_009698.1 identified by match to protein family HMM PF01554; MATE efflux family protein 2195142 5400755 CLC_2069 Clostridium botulinum A str. Hall MATE efflux family protein YP_001387916.1 2193841 D 441771 CDS YP_001387917.1 153935670 5399512 2195288..2196235 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2196235 5399512 CLC_2070 Clostridium botulinum A str. Hall hypothetical protein YP_001387917.1 2195288 D 441771 CDS YP_001387918.1 153935947 5398924 complement(2196353..2196859) 1 NC_009698.1 hypothetical protein 2196859 5398924 CLC_2071 Clostridium botulinum A str. Hall hypothetical protein YP_001387918.1 2196353 R 441771 CDS YP_001387919.1 153937189 5401728 complement(2196887..2197018) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2197018 5401728 CLC_2072 Clostridium botulinum A str. Hall hypothetical protein YP_001387919.1 2196887 R 441771 CDS YP_001387920.1 153937875 5401309 complement(2197003..2197791) 1 NC_009698.1 identified by match to protein family HMM PF09234; hypothetical protein 2197791 5401309 CLC_2073 Clostridium botulinum A str. Hall hypothetical protein YP_001387920.1 2197003 R 441771 CDS YP_001387921.1 153934963 5398854 complement(2198596..2198958) 1 NC_009698.1 hypothetical protein 2198958 5398854 CLC_2074 Clostridium botulinum A str. Hall hypothetical protein YP_001387921.1 2198596 R 441771 CDS YP_001387922.1 153935849 5400229 complement(2198971..2199459) 1 NC_009698.1 identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764; excisionase 2199459 5400229 CLC_2075 Clostridium botulinum A str. Hall excisionase YP_001387922.1 2198971 R 441771 CDS YP_001387923.1 153936444 5400076 complement(2199741..2200379) 1 NC_009698.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076; sortase 2200379 5400076 CLC_2076 Clostridium botulinum A str. Hall sortase YP_001387923.1 2199741 R 441771 CDS YP_001387924.1 153937410 5401040 complement(2200348..2203041) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2203041 5401040 CLC_2077 Clostridium botulinum A str. Hall hypothetical protein YP_001387924.1 2200348 R 441771 CDS YP_001387925.1 153934656 5398780 complement(2203358..2204377) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2204377 5398780 CLC_2078 Clostridium botulinum A str. Hall sensor histidine kinase YP_001387925.1 2203358 R 441771 CDS YP_001387926.1 153935511 5401128 complement(2204374..2205045) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2205045 5401128 CLC_2079 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001387926.1 2204374 R 441771 CDS YP_001387927.1 153935691 5400800 complement(2205243..2205953) 1 NC_009698.1 hypothetical protein 2205953 5400800 CLC_2080 Clostridium botulinum A str. Hall hypothetical protein YP_001387927.1 2205243 R 441771 CDS YP_001387928.2 532643386 5398231 complement(2205946..2208171) 1 NC_009698.1 membrane protein 2208171 5398231 CLC_2081 Clostridium botulinum A str. Hall membrane protein YP_001387928.2 2205946 R 441771 CDS YP_001387929.1 153937117 5401161 complement(2208174..2209049) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2209049 5401161 CLC_2082 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387929.1 2208174 R 441771 CDS YP_001387930.1 153936279 5399581 complement(2209109..2211103) 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 2211103 5399581 CLC_2083 Clostridium botulinum A str. Hall ABC transporter permease YP_001387930.1 2209109 R 441771 CDS YP_001387931.1 153937178 5400486 complement(2211411..2212496) 1 NC_009698.1 FAD/NAD(P)-binding domain; oxidoreductase 2212496 5400486 CLC_2084 Clostridium botulinum A str. Hall oxidoreductase YP_001387931.1 2211411 R 441771 CDS YP_001387932.1 153935186 5399499 complement(2212489..2212734) 1 NC_009698.1 hypothetical protein 2212734 5399499 CLC_2085 Clostridium botulinum A str. Hall hypothetical protein YP_001387932.1 2212489 R 441771 CDS YP_001387933.1 153936077 5398618 complement(2212751..2213242) 1 NC_009698.1 hypothetical protein 2213242 5398618 CLC_2086 Clostridium botulinum A str. Hall hypothetical protein YP_001387933.1 2212751 R 441771 CDS YP_001387934.1 153936628 5399953 complement(2213694..2214734) 1 NC_009698.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-binding dehydrogenase oxidoreductase 2214734 5399953 CLC_2087 Clostridium botulinum A str. Hall zinc-binding dehydrogenase oxidoreductase YP_001387934.1 2213694 R 441771 CDS YP_001387935.1 153937624 5400683 complement(2214801..2215658) 1 NC_009698.1 identified by match to protein family HMM PF01261; AP endonuclease 2215658 5400683 CLC_2088 Clostridium botulinum A str. Hall AP endonuclease YP_001387935.1 2214801 R 441771 CDS YP_001387936.1 153937255 5400829 complement(2215742..2216881) 1 NC_009698.1 identified by match to protein family HMM PF01761; 3-dehydroquinate synthase 2216881 5400829 CLC_2089 Clostridium botulinum A str. Hall 3-dehydroquinate synthase YP_001387936.1 2215742 R 441771 CDS YP_001387937.1 153934821 5398531 complement(2217447..2219441) 1 NC_009698.1 identified by match to protein family HMM PF02687; ABC transporter permease 2219441 5398531 CLC_2090 Clostridium botulinum A str. Hall ABC transporter permease YP_001387937.1 2217447 R 441771 CDS YP_001387938.1 153935486 5399502 complement(2219431..2220198) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2220198 5399502 CLC_2091 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001387938.1 2219431 R 441771 CDS YP_001387939.1 153936343 5399890 complement(2220984..2221337) 1 NC_009698.1 hypothetical protein 2221337 5399890 CLC_2092 Clostridium botulinum A str. Hall hypothetical protein YP_001387939.1 2220984 R 441771 CDS YP_001387940.1 153936596 5398952 complement(2221663..2223756) 1 NC_009698.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; PRD domain-containing protein 2223756 5398952 CLC_2093 Clostridium botulinum A str. Hall PRD domain-containing protein YP_001387940.1 2221663 R 441771 CDS YP_001387941.1 153937513 5399645 complement(2223968..2225332) 1 NC_009698.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 2225332 ulaA 5399645 ulaA Clostridium botulinum A str. Hall PTS system ascorbate-specific transporter subunit IIC YP_001387941.1 2223968 R 441771 CDS YP_001387942.1 153935158 5400350 complement(2225345..2225629) 1 NC_009698.1 identified by match to protein family HMM PF02302; PTS system L-ascorbate family transporter subunit IIB 2225629 5400350 CLC_2095 Clostridium botulinum A str. Hall PTS system L-ascorbate family transporter subunit IIB YP_001387942.1 2225345 R 441771 CDS YP_001387943.1 153936088 5401562 complement(2225658..2226095) 1 NC_009698.1 identified by match to protein family HMM PF00359; PTS system L-ascorbate family transporter subunit IIA 2226095 5401562 CLC_2096 Clostridium botulinum A str. Hall PTS system L-ascorbate family transporter subunit IIA YP_001387943.1 2225658 R 441771 CDS YP_001387944.1 153937154 5398990 complement(2226119..2226835) 1 NC_009698.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 2226835 5398990 CLC_2097 Clostridium botulinum A str. Hall translaldolase YP_001387944.1 2226119 R 441771 CDS YP_001387945.1 153934713 5399712 complement(2227070..2227474) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2227474 5399712 CLC_2098 Clostridium botulinum A str. Hall hypothetical protein YP_001387945.1 2227070 R 441771 CDS YP_001387946.1 153935705 5400047 complement(2227812..2228546) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2228546 5400047 CLC_2099 Clostridium botulinum A str. Hall hypothetical protein YP_001387946.1 2227812 R 441771 CDS YP_001387947.1 153936676 5398756 complement(2228886..2229479) 1 NC_009698.1 identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; membrane protein 2229479 5398756 CLC_2100 Clostridium botulinum A str. Hall membrane protein YP_001387947.1 2228886 R 441771 CDS YP_001387948.1 153937589 5398412 2230307..2230795 1 NC_009698.1 lipoprotein 2230795 5398412 CLC_2101 Clostridium botulinum A str. Hall lipoprotein YP_001387948.1 2230307 D 441771 CDS YP_001387949.1 153935139 5399532 complement(2231578..2231982) 1 NC_009698.1 hypothetical protein 2231982 5399532 CLC_2102 Clostridium botulinum A str. Hall hypothetical protein YP_001387949.1 2231578 R 441771 CDS YP_001387950.1 153935296 5399479 complement(2232115..2232729) 1 NC_009698.1 identified by match to protein family HMM PF00132; O-acetyltransferase 2232729 5399479 CLC_2103 Clostridium botulinum A str. Hall O-acetyltransferase YP_001387950.1 2232115 R 441771 CDS YP_001387951.1 153935726 5398847 2233737..2235143 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2235143 5398847 CLC_2105 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001387951.1 2233737 D 441771 CDS YP_001387952.1 153936069 5401418 complement(2235246..2235986) 1 NC_009698.1 identified by match to protein family HMM PF08242; hypothetical protein 2235986 5401418 CLC_2106 Clostridium botulinum A str. Hall hypothetical protein YP_001387952.1 2235246 R 441771 CDS YP_001387953.1 153936642 5398923 complement(2235993..2236883) 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445; AraC family transcriptional regulator 2236883 5398923 CLC_2107 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001387953.1 2235993 R 441771 CDS YP_001387954.1 153934540 5398501 2237184..2237705 1 NC_009698.1 hypothetical protein 2237705 5398501 CLC_2108 Clostridium botulinum A str. Hall hypothetical protein YP_001387954.1 2237184 D 441771 CDS YP_001387955.1 153937190 5398513 complement(2239669..2241666) 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992; 2-enoate reductase 2241666 enr 5398513 enr Clostridium botulinum A str. Hall 2-enoate reductase YP_001387955.1 2239669 R 441771 CDS YP_001387956.1 153936058 5398256 complement(2241763..2242560) 1 NC_009698.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 2242560 5398256 CLC_2110 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001387956.1 2241763 R 441771 CDS YP_001387957.1 153937301 5400920 complement(2242608..2242901) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2242901 5400920 CLC_2111 Clostridium botulinum A str. Hall hypothetical protein YP_001387957.1 2242608 R 441771 CDS YP_001387958.1 153937745 5400784 complement(2243093..2243431) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2243431 5400784 CLC_2112 Clostridium botulinum A str. Hall hypothetical protein YP_001387958.1 2243093 R 441771 CDS YP_001387959.1 153936640 5401371 complement(2243443..2244336) 1 NC_009698.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01898; CRISPR-associated Cmr5 family protein 2244336 5401371 CLC_2113 Clostridium botulinum A str. Hall CRISPR-associated Cmr5 family protein YP_001387959.1 2243443 R 441771 CDS YP_001387960.1 153935378 5399307 complement(2244348..2244782) 1 NC_009698.1 hypothetical protein 2244782 5399307 CLC_2114 Clostridium botulinum A str. Hall hypothetical protein YP_001387960.1 2244348 R 441771 CDS YP_001387961.1 153935145 5398511 complement(2244810..2245649) 1 NC_009698.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02580; CRISPR-associated RAMP Cmr4 family protein 2245649 cmr4 5398511 cmr4 Clostridium botulinum A str. Hall CRISPR-associated RAMP Cmr4 family protein YP_001387961.1 2244810 R 441771 CDS YP_001387962.1 153937358 5400607 complement(2245661..2246860) 1 NC_009698.1 CRISPR-associated Cmr3 family protein 2246860 cmr3 5400607 cmr3 Clostridium botulinum A str. Hall CRISPR-associated Cmr3 family protein YP_001387962.1 2245661 R 441771 CDS YP_001387963.1 153936213 5401292 complement(2246877..2248589) 1 NC_009698.1 identified by match to protein family HMM TIGR02577; CRISPR-associated RAMP Crm2 family protein 2248589 crm2 5401292 crm2 Clostridium botulinum A str. Hall CRISPR-associated RAMP Crm2 family protein YP_001387963.1 2246877 R 441771 CDS YP_001387964.1 153935489 5399175 complement(2248590..2249777) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2249777 5399175 CLC_2118 Clostridium botulinum A str. Hall hypothetical protein YP_001387964.1 2248590 R 441771 CDS YP_001387965.1 153934567 5399215 complement(2249790..2251493) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2251493 5399215 CLC_2119 Clostridium botulinum A str. Hall hypothetical protein YP_001387965.1 2249790 R 441771 CDS YP_001387966.1 153937422 5399059 complement(2251545..2251919) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2251919 5399059 CLC_2120 Clostridium botulinum A str. Hall hypothetical protein YP_001387966.1 2251545 R 441771 CDS YP_001387967.1 153935860 5399295 complement(2251939..2252628) 1 NC_009698.1 identified by match to protein family HMM TIGR01877; CRISPR-associated Cas family protein 2252628 cas6 5399295 cas6 Clostridium botulinum A str. Hall CRISPR-associated Cas family protein YP_001387967.1 2251939 R 441771 CDS YP_001387968.1 153937087 5400981 complement(2254367..2256022) 1 NC_009698.1 hypothetical protein 2256022 5400981 CLC_2122 Clostridium botulinum A str. Hall hypothetical protein YP_001387968.1 2254367 R 441771 CDS YP_001387971.1 153936022 5400842 complement(2257785..2258705) 1 NC_009698.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein 2258705 5400842 CLC_2125 Clostridium botulinum A str. Hall PhzF family phenazine biosynthesis protein YP_001387971.1 2257785 R 441771 CDS YP_001387972.1 153935225 5399687 2259029..2260522 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 2260522 5399687 CLC_2126 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001387972.1 2259029 D 441771 CDS YP_001387973.1 153937496 5398589 2261447..2261902 1 NC_009698.1 hypothetical protein 2261902 5398589 CLC_2127 Clostridium botulinum A str. Hall hypothetical protein YP_001387973.1 2261447 D 441771 CDS YP_001387974.1 153937509 5398577 complement(2261982..2262449) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2262449 5398577 CLC_2128 Clostridium botulinum A str. Hall DNA-binding protein YP_001387974.1 2261982 R 441771 CDS YP_001387975.1 153935610 5398744 complement(2262617..2263663) 1 NC_009698.1 identified by match to protein family HMM PF07859; lipase/esterase 2263663 5398744 CLC_2129 Clostridium botulinum A str. Hall lipase/esterase YP_001387975.1 2262617 R 441771 CDS YP_001387977.1 153936940 5400552 complement(2263914..2265266) 1 NC_009698.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 2265266 5400552 CLC_2131 Clostridium botulinum A str. Hall amidohydrolase YP_001387977.1 2263914 R 441771 CDS YP_001387978.1 153936179 5401714 complement(2265475..2266818) 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR03173; xanthine/uracil permease 2266818 5401714 CLC_2132 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001387978.1 2265475 R 441771 CDS YP_001387979.2 532643390 5398828 2267254..2268153 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2268153 5398828 CLC_2133 Clostridium botulinum A str. Hall hypothetical protein YP_001387979.2 2267254 D 441771 CDS YP_001387980.1 153935752 5401810 2268494..2269813 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 2269813 5401810 CLC_2134 Clostridium botulinum A str. Hall amino acid permease YP_001387980.1 2268494 D 441771 CDS YP_001387981.1 153934974 5399359 complement(2270092..2270865) 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; 2-hydroxyglutaryl-CoA dehydratase 2270865 hgdC-2 5399359 hgdC-2 Clostridium botulinum A str. Hall 2-hydroxyglutaryl-CoA dehydratase YP_001387981.1 2270092 R 441771 CDS YP_001387982.1 153937678 5399960 complement(2270942..2272573) 1 NC_009698.1 hypothetical protein 2272573 5399960 CLC_2136 Clostridium botulinum A str. Hall hypothetical protein YP_001387982.1 2270942 R 441771 CDS YP_001387983.1 153936942 5400016 complement(2272874..2273923) 1 NC_009698.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 2273923 5400016 CLC_2137 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit alpha/FixB family protein YP_001387983.1 2272874 R 441771 CDS YP_001387984.1 153935221 5401624 complement(2273942..2274727) 1 NC_009698.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 2274727 5401624 CLC_2138 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit beta/FixA family protein YP_001387984.1 2273942 R 441771 CDS YP_001387985.1 153934592 5398830 complement(2274766..2275899) 1 NC_009698.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 2275899 5398830 CLC_2139 Clostridium botulinum A str. Hall acyl-CoA dehydrogenase YP_001387985.1 2274766 R 441771 CDS YP_001387986.1 153937293 5398363 complement(2276164..2277291) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit beta 2277291 5398363 CLC_2140 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit beta YP_001387986.1 2276164 R 441771 CDS YP_001387987.1 153936713 5399151 complement(2277291..2278523) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit alpha 2278523 5399151 CLC_2141 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit alpha YP_001387987.1 2277291 R 441771 CDS YP_001387988.1 153934626 5401096 complement(2278586..2279800) 1 NC_009698.1 identified by match to protein family HMM PF02515; hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase 2279800 5401096 CLC_2142 Clostridium botulinum A str. Hall hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase YP_001387988.1 2278586 R 441771 CDS YP_001387989.1 153935150 5399367 complement(2280182..2280502) 1 NC_009698.1 identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor biosynthesis 2280502 5399367 CLC_2143 Clostridium botulinum A str. Hall dinitrogenase iron-molybdenum cofactor biosynthesis YP_001387989.1 2280182 R 441771 CDS YP_001387990.1 153936550 5400886 complement(2280598..2281443) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656; iron-sulfur binding protein 2281443 5400886 CLC_2144 Clostridium botulinum A str. Hall iron-sulfur binding protein YP_001387990.1 2280598 R 441771 CDS YP_001387991.1 153937078 5399732 complement(2281434..2282264) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01656; iron-sulfur binding protein 2282264 5399732 CLC_2145 Clostridium botulinum A str. Hall iron-sulfur binding protein YP_001387991.1 2281434 R 441771 CDS YP_001387992.1 153934986 5400323 complement(2282289..2282648) 1 NC_009698.1 identified by match to protein family HMM PF02579; dinitrogenase iron-molybdenum cofactor family protein 2282648 5400323 CLC_2146 Clostridium botulinum A str. Hall dinitrogenase iron-molybdenum cofactor family protein YP_001387992.1 2282289 R 441771 CDS YP_001387993.1 153935536 5401352 complement(2283237..2283614) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2283614 5401352 CLC_2147 Clostridium botulinum A str. Hall hypothetical protein YP_001387993.1 2283237 R 441771 CDS YP_001387994.1 153937092 5398310 complement(2283910..2284674) 1 NC_009698.1 identified by match to protein family HMM PF00691; chemotaxis protein MotB 2284674 motB-1 5398310 motB-1 Clostridium botulinum A str. Hall chemotaxis protein MotB YP_001387994.1 2283910 R 441771 CDS YP_001387995.1 153936340 5398777 complement(2284692..2285477) 1 NC_009698.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein MotA 2285477 motA-1 5398777 motA-1 Clostridium botulinum A str. Hall flagellar motor protein MotA YP_001387995.1 2284692 R 441771 CDS YP_001387997.1 153934473 5401402 complement(2286166..2287782) 1 NC_009698.1 identified by match to protein family HMM PF04122; amidase 2287782 5401402 CLC_2151 Clostridium botulinum A str. Hall amidase YP_001387997.1 2286166 R 441771 CDS YP_001387998.1 153935909 5399925 complement(2288093..2288716) 1 NC_009698.1 hypothetical protein 2288716 5399925 CLC_2152 Clostridium botulinum A str. Hall hypothetical protein YP_001387998.1 2288093 R 441771 CDS YP_001387999.1 153936503 5398644 complement(2288996..2289337) 1 NC_009698.1 hypothetical protein 2289337 5398644 CLC_2153 Clostridium botulinum A str. Hall hypothetical protein YP_001387999.1 2288996 R 441771 CDS YP_001388000.1 153936950 5399351 complement(2289343..2291298) 1 NC_009698.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 2291298 5399351 CLC_2154 Clostridium botulinum A str. Hall OPT family oligopeptide transporter YP_001388000.1 2289343 R 441771 CDS YP_001388001.1 153937682 5398503 complement(2291416..2292864) 1 NC_009698.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 2292864 pepD-2 5398503 pepD-2 Clostridium botulinum A str. Hall aminoacyl-histidine dipeptidase YP_001388001.1 2291416 R 441771 CDS YP_001388002.1 153935391 5400873 complement(2293422..2294450) 1 NC_009698.1 identified by match to protein family HMM PF01212; low specificity L-threonine aldolase 2294450 5400873 CLC_2156 Clostridium botulinum A str. Hall low specificity L-threonine aldolase YP_001388002.1 2293422 R 441771 CDS YP_001388003.1 153936666 5401628 2295157..2295291 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2295291 5401628 CLC_2158 Clostridium botulinum A str. Hall hypothetical protein YP_001388003.1 2295157 D 441771 CDS YP_001388004.1 153936126 5398430 complement(2295288..2296430) 1 NC_009698.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 2296430 glxK 5398430 glxK Clostridium botulinum A str. Hall glycerate kinase YP_001388004.1 2295288 R 441771 CDS YP_001388005.1 153937450 5399767 2297069..2297866 1 NC_009698.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2297866 5399767 CLC_2159 Clostridium botulinum A str. Hall short chain dehydrogenase/reductase oxidoreductase YP_001388005.1 2297069 D 441771 CDS YP_001388006.1 153935176 5399740 complement(2298388..2299566) 1 NC_009698.1 sodium extrusion protein NatB 2299566 5399740 CLC_2160 Clostridium botulinum A str. Hall sodium extrusion protein NatB YP_001388006.1 2298388 R 441771 CDS YP_001388007.1 153937266 5401409 complement(2299580..2300299) 1 NC_009698.1 identified by match to protein family HMM PF00005; sodium extrusion ATP-binding protein NatA 2300299 5401409 CLC_2161 Clostridium botulinum A str. Hall sodium extrusion ATP-binding protein NatA YP_001388007.1 2299580 R 441771 CDS YP_001388008.1 153936613 5399539 complement(2300755..2301204) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 2301204 5399539 CLC_2162 Clostridium botulinum A str. Hall acetyltransferase YP_001388008.1 2300755 R 441771 CDS YP_001388009.1 153935224 5400437 complement(2301218..2301682) 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2301682 5400437 CLC_2163 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001388009.1 2301218 R 441771 CDS YP_001388010.1 153937857 5401226 2302033..2302167 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2302167 5401226 CLC_2164 Clostridium botulinum A str. Hall hypothetical protein YP_001388010.1 2302033 D 441771 CDS YP_001388011.1 153935692 5398366 complement(2302375..2302779) 1 NC_009698.1 hypothetical protein 2302779 5398366 CLC_2165 Clostridium botulinum A str. Hall hypothetical protein YP_001388011.1 2302375 R 441771 CDS YP_001388012.1 153934692 5401519 complement(2302875..2303945) 1 NC_009698.1 identified by match to protein family HMM PF01208; uroporphyrinogen decarboxylase 2303945 5401519 CLC_2166 Clostridium botulinum A str. Hall uroporphyrinogen decarboxylase YP_001388012.1 2302875 R 441771 CDS YP_001388013.1 153934842 5401162 complement(2304293..2305741) 1 NC_009698.1 identified by match to protein family HMM PF01266; match to protein family HMM PF04324; oxidoreductase, FAD/[2Fe-2S]-binding 2305741 5401162 CLC_2167 Clostridium botulinum A str. Hall oxidoreductase, FAD/[2Fe-2S]-binding YP_001388013.1 2304293 R 441771 CDS YP_001388014.1 153937119 5399785 2306089..2306907 1 NC_009698.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445; MerR family transcriptional regulator 2306907 5399785 CLC_2168 Clostridium botulinum A str. Hall MerR family transcriptional regulator YP_001388014.1 2306089 D 441771 CDS YP_001388015.1 153936418 5399909 complement(2307116..2308519) 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 2308519 5399909 CLC_2169 Clostridium botulinum A str. Hall amino acid permease YP_001388015.1 2307116 R 441771 CDS YP_001388016.1 153935842 5400488 complement(2308957..2309499) 1 NC_009698.1 identified by match to protein family HMM PF01661; hypothetical protein 2309499 5400488 CLC_2170 Clostridium botulinum A str. Hall hypothetical protein YP_001388016.1 2308957 R 441771 CDS YP_001388017.1 153936923 5399597 complement(2309881..2310138) 1 NC_009698.1 identified by match to protein family HMM PF06961; hypothetical protein 2310138 5399597 CLC_2171 Clostridium botulinum A str. Hall hypothetical protein YP_001388017.1 2309881 R 441771 CDS YP_001388018.1 153937805 5400790 2310498..2310623 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2310623 5400790 CLC_2172 Clostridium botulinum A str. Hall hypothetical protein YP_001388018.1 2310498 D 441771 CDS YP_001388019.1 153935887 5398293 2310642..2311073 1 NC_009698.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2311073 5398293 CLC_2173 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001388019.1 2310642 D 441771 CDS YP_001388020.1 153937464 5399934 2311076..2311468 1 NC_009698.1 hypothetical protein 2311468 5399934 CLC_2174 Clostridium botulinum A str. Hall hypothetical protein YP_001388020.1 2311076 D 441771 CDS YP_001388021.1 153934564 5399558 complement(2311726..2311914) 1 NC_009698.1 ATP-binding protein 2311914 5399558 CLC_2175 Clostridium botulinum A str. Hall ATP-binding protein YP_001388021.1 2311726 R 441771 CDS YP_001388022.1 153935485 5400907 complement(2312134..2312931) 1 NC_009698.1 identified by match to protein family HMM PF02110; hydroxyethylthiazole kinase 2312931 thiM-2 5400907 thiM-2 Clostridium botulinum A str. Hall hydroxyethylthiazole kinase YP_001388022.1 2312134 R 441771 CDS YP_001388023.2 532643389 5398470 complement(2312909..2313478) 1 NC_009698.1 thiW protein 2313478 thiW 5398470 thiW Clostridium botulinum A str. Hall thiW protein YP_001388023.2 2312909 R 441771 CDS YP_001388025.1 153934861 5400452 complement(2313921..2314358) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 2314358 5400452 CLC_2179 Clostridium botulinum A str. Hall acetyltransferase YP_001388025.1 2313921 R 441771 CDS YP_001388026.1 153935600 5400875 complement(2314486..2315214) 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2315214 5400875 CLC_2180 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001388026.1 2314486 R 441771 CDS YP_001388027.1 153936290 5399523 complement(2315399..2315671) 1 NC_009698.1 hypothetical protein 2315671 5399523 CLC_2181 Clostridium botulinum A str. Hall hypothetical protein YP_001388027.1 2315399 R 441771 CDS YP_001388028.1 153937439 5401450 complement(2315956..2316639) 1 NC_009698.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2316639 bioD 5401450 bioD Clostridium botulinum A str. Hall dithiobiotin synthetase YP_001388028.1 2315956 R 441771 CDS YP_001388029.1 153934583 5401796 complement(2316642..2317598) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 2317598 bioB 5401796 bioB Clostridium botulinum A str. Hall biotin synthase YP_001388029.1 2316642 R 441771 CDS YP_001388030.1 153935151 5399643 complement(2317591..2318151) 1 NC_009698.1 identified by match to protein family HMM PF02632; BioY family protein 2318151 5399643 CLC_2184 Clostridium botulinum A str. Hall BioY family protein YP_001388030.1 2317591 R 441771 CDS YP_001388031.1 153936098 5398606 complement(2318290..2318619) 1 NC_009698.1 hypothetical protein 2318619 5398606 CLC_2185 Clostridium botulinum A str. Hall hypothetical protein YP_001388031.1 2318290 R 441771 CDS YP_001388032.1 153936662 5399733 complement(2318607..2319035) 1 NC_009698.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01047; MarR family transcriptional regulator 2319035 5399733 CLC_2186 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001388032.1 2318607 R 441771 CDS YP_001388033.1 153935786 5398977 complement(2319177..2319773) 1 NC_009698.1 hypothetical protein 2319773 5398977 CLC_2187 Clostridium botulinum A str. Hall hypothetical protein YP_001388033.1 2319177 R 441771 CDS YP_001388034.1 153937011 5401790 2319951..2321744 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321; M24 family metallopeptidase 2321744 5401790 CLC_2188 Clostridium botulinum A str. Hall M24 family metallopeptidase YP_001388034.1 2319951 D 441771 CDS YP_001388035.1 153937298 5400540 2321775..2323172 1 NC_009698.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924; amino acid/peptide transporter 2323172 5400540 CLC_2189 Clostridium botulinum A str. Hall amino acid/peptide transporter YP_001388035.1 2321775 D 441771 CDS YP_001388036.1 153935007 5398741 complement(2323712..2323960) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2323960 5398741 CLC_2190 Clostridium botulinum A str. Hall hypothetical protein YP_001388036.1 2323712 R 441771 CDS YP_001388037.1 153934933 5401367 complement(2324224..2324493) 1 NC_009698.1 hypothetical protein 2324493 5401367 CLC_2191 Clostridium botulinum A str. Hall hypothetical protein YP_001388037.1 2324224 R 441771 CDS YP_001388038.1 153937792 5398668 2324761..2325093 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2325093 5398668 CLC_2192 Clostridium botulinum A str. Hall hypothetical protein YP_001388038.1 2324761 D 441771 CDS YP_001388039.1 153937835 5400757 complement(2325258..2326259) 1 NC_009698.1 identified by match to protein family HMM PF02275; match to protein family HMM PF03417; choloylglycine hydrolase 2326259 5400757 CLC_2193 Clostridium botulinum A str. Hall choloylglycine hydrolase YP_001388039.1 2325258 R 441771 CDS YP_001388040.1 153936369 5401287 complement(2326457..2327038) 1 NC_009698.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; hypothetical protein 2327038 5401287 CLC_2194 Clostridium botulinum A str. Hall hypothetical protein YP_001388040.1 2326457 R 441771 CDS YP_001388041.1 153936656 5398981 complement(2327493..2327834) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2327834 5398981 CLC_2195 Clostridium botulinum A str. Hall hypothetical protein YP_001388041.1 2327493 R 441771 CDS YP_008472695.1 532643413 5398904 complement(2327967..2328095) 1 NC_009698.1 hypothetical protein 2328095 5398904 CLC_2197 Clostridium botulinum A str. Hall hypothetical protein YP_008472695.1 2327967 R 441771 CDS YP_001388042.1 153936455 5400070 complement(2328153..2328356) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2328356 5400070 CLC_2198 Clostridium botulinum A str. Hall hypothetical protein YP_001388042.1 2328153 R 441771 CDS YP_001388043.1 153935204 5399071 2329170..2329502 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2329502 5399071 CLC_2199 Clostridium botulinum A str. Hall hypothetical protein YP_001388043.1 2329170 D 441771 CDS YP_001388044.1 153937865 5399828 2329944..2330927 1 NC_009698.1 hypothetical protein 2330927 5399828 CLC_2200 Clostridium botulinum A str. Hall hypothetical protein YP_001388044.1 2329944 D 441771 CDS YP_001388045.1 153936757 5401002 complement(2331022..2331189) 1 NC_009698.1 hypothetical protein 2331189 5401002 CLC_2201 Clostridium botulinum A str. Hall hypothetical protein YP_001388045.1 2331022 R 441771 CDS YP_001388046.1 153936002 5398833 complement(2332041..2332634) 1 NC_009698.1 lipoprotein 2332634 5398833 CLC_2202 Clostridium botulinum A str. Hall lipoprotein YP_001388046.1 2332041 R 441771 CDS YP_001388047.1 153935640 5400946 complement(2332808..2333257) 1 NC_009698.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2333257 msrB 5400946 msrB Clostridium botulinum A str. Hall methionine sulfoxide reductase B YP_001388047.1 2332808 R 441771 CDS YP_001388048.1 153937653 5400103 complement(2333489..2334085) 1 NC_009698.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777; Mn/Fe superoxide dismutase 2334085 sodF 5400103 sodF Clostridium botulinum A str. Hall Mn/Fe superoxide dismutase YP_001388048.1 2333489 R 441771 CDS YP_001388049.1 153937151 5399884 complement(2334198..2335943) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein/permease 2335943 5399884 CLC_2205 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001388049.1 2334198 R 441771 CDS YP_001388050.1 153934887 5401665 complement(2335936..2337735) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein/permease 2337735 5401665 CLC_2206 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein/permease YP_001388050.1 2335936 R 441771 CDS YP_001388051.1 153936083 5399880 complement(2338015..2338974) 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 2338974 5399880 CLC_2207 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001388051.1 2338015 R 441771 CDS YP_001388052.1 153936868 5399742 complement(2339481..2340215) 1 NC_009698.1 hypothetical protein 2340215 5399742 CLC_2208 Clostridium botulinum A str. Hall hypothetical protein YP_001388052.1 2339481 R 441771 CDS YP_001388053.1 153937591 5400213 complement(2340251..2340997) 1 NC_009698.1 hypothetical protein 2340997 5400213 CLC_2209 Clostridium botulinum A str. Hall hypothetical protein YP_001388053.1 2340251 R 441771 CDS YP_001388054.1 153934908 5400266 complement(2340990..2341910) 1 NC_009698.1 identified by match to protein family HMM PF00005; antibiotic ABC transporter ATP-binding protein 2341910 5400266 CLC_2210 Clostridium botulinum A str. Hall antibiotic ABC transporter ATP-binding protein YP_001388054.1 2340990 R 441771 CDS YP_001388055.1 153934849 5399481 complement(2342112..2343023) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2343023 5399481 CLC_2211 Clostridium botulinum A str. Hall sensor histidine kinase YP_001388055.1 2342112 R 441771 CDS YP_001388056.1 153936748 5398473 complement(2343020..2343727) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2343727 5398473 CLC_2212 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001388056.1 2343020 R 441771 CDS YP_001388058.1 153935233 5398491 2344354..2345115 1 NC_009698.1 identified by match to protein family HMM PF00929; exonuclease 2345115 5398491 CLC_2214 Clostridium botulinum A str. Hall exonuclease YP_001388058.1 2344354 D 441771 CDS YP_001388059.1 153936527 5400511 complement(2345149..2345451) 1 NC_009698.1 identified by match to protein family HMM PF07876; stress responsive alpha-beta barrel domain-containing protein 2345451 5400511 CLC_2215 Clostridium botulinum A str. Hall stress responsive alpha-beta barrel domain-containing protein YP_001388059.1 2345149 R 441771 CDS YP_001388060.1 153937249 5399836 complement(2345534..2346370) 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2346370 5399836 CLC_2216 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001388060.1 2345534 R 441771 CDS YP_001388061.1 153937608 5400178 complement(2346673..2347125) 1 NC_009698.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 2347125 def-1 5400178 def-1 Clostridium botulinum A str. Hall peptide deformylase YP_001388061.1 2346673 R 441771 CDS YP_001388062.1 153935529 5399143 complement(2347126..2347362) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2347362 5399143 CLC_2218 Clostridium botulinum A str. Hall DNA-binding protein YP_001388062.1 2347126 R 441771 CDS YP_001388063.1 153936621 5398397 complement(2347604..2348425) 1 NC_009698.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links; transglutaminase 2348425 tgl 5398397 tgl Clostridium botulinum A str. Hall transglutaminase YP_001388063.1 2347604 R 441771 CDS YP_001388064.1 153937601 5401472 complement(2348422..2349417) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2349417 5401472 CLC_2220 Clostridium botulinum A str. Hall hypothetical protein YP_001388064.1 2348422 R 441771 CDS YP_001388065.1 153935130 5400378 2350157..2351056 1 NC_009698.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 2351056 5400378 CLC_2221 Clostridium botulinum A str. Hall short chain dehydrogenase/reductase oxidoreductase YP_001388065.1 2350157 D 441771 CDS YP_001388066.1 153934734 5400467 complement(2351246..2351842) 1 NC_009698.1 hypothetical protein 2351842 5400467 CLC_2222 Clostridium botulinum A str. Hall hypothetical protein YP_001388066.1 2351246 R 441771 CDS YP_001388067.1 153936725 5398315 2352518..2353891 1 NC_009698.1 identified by match to protein family HMM PF02366; hypothetical protein 2353891 5398315 CLC_2223 Clostridium botulinum A str. Hall hypothetical protein YP_001388067.1 2352518 D 441771 CDS YP_001388068.1 153936144 5401773 complement(2354093..2354398) 1 NC_009698.1 hypothetical protein 2354398 5401773 CLC_2224 Clostridium botulinum A str. Hall hypothetical protein YP_001388068.1 2354093 R 441771 CDS YP_001388069.1 153935191 5399569 complement(2354391..2354915) 1 NC_009698.1 hypothetical protein 2354915 5399569 CLC_2225 Clostridium botulinum A str. Hall hypothetical protein YP_001388069.1 2354391 R 441771 CDS YP_001388070.1 153937235 5400959 complement(2354896..2355348) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2355348 5400959 CLC_2226 Clostridium botulinum A str. Hall hypothetical protein YP_001388070.1 2354896 R 441771 CDS YP_001388071.1 153936182 5398288 complement(2355345..2355857) 1 NC_009698.1 identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 2355857 5398288 CLC_2227 Clostridium botulinum A str. Hall ECF subfamily RNA polymerase sigma factor YP_001388071.1 2355345 R 441771 CDS YP_001388072.1 153935662 5400657 complement(2356311..2357417) 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2357417 5400657 CLC_2228 Clostridium botulinum A str. Hall spore germination protein YP_001388072.1 2356311 R 441771 CDS YP_001388073.1 153937696 5399469 complement(2357822..2358769) 1 NC_009698.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 2358769 5399469 CLC_2229 Clostridium botulinum A str. Hall DNA-cytosine methyltransferase YP_001388073.1 2357822 R 441771 CDS YP_001388074.1 153936961 5399587 complement(2358839..2360191) 1 NC_009698.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; match to protein family HMM TIGR00277; poly(A) polymerase 2360191 5399587 CLC_2230 Clostridium botulinum A str. Hall poly(A) polymerase YP_001388074.1 2358839 R 441771 CDS YP_001388075.1 153935804 5399398 complement(2360181..2360429) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2360429 5399398 CLC_2231 Clostridium botulinum A str. Hall hypothetical protein YP_001388075.1 2360181 R 441771 CDS YP_001388076.1 153936787 5398254 complement(2360606..2360770) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2360770 5398254 CLC_2232 Clostridium botulinum A str. Hall hypothetical protein YP_001388076.1 2360606 R 441771 CDS YP_001388077.1 153935626 5401762 2361373..2361705 1 NC_009698.1 identified by match to protein family HMM PF03551; PadR family transcriptional regulator 2361705 5401762 CLC_2233 Clostridium botulinum A str. Hall PadR family transcriptional regulator YP_001388077.1 2361373 D 441771 CDS YP_001388078.2 532643392 5398958 2361707..2362483 1 NC_009698.1 membrane protein 2362483 5398958 CLC_2234 Clostridium botulinum A str. Hall membrane protein YP_001388078.2 2361707 D 441771 CDS YP_001388079.1 153937053 5401787 complement(2362557..2363807) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2363807 5401787 CLC_2235 Clostridium botulinum A str. Hall sensor histidine kinase YP_001388079.1 2362557 R 441771 CDS YP_001388080.1 153936330 5400926 complement(2363800..2364480) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2364480 5400926 CLC_2236 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001388080.1 2363800 R 441771 CDS YP_001388081.1 153937006 5398885 complement(2364473..2365012) 1 NC_009698.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 2365012 5398885 CLC_2237 Clostridium botulinum A str. Hall UBA/TS-N domain-containing protein YP_001388081.1 2364473 R 441771 CDS YP_001388082.1 153935833 5401740 complement(2365162..2365704) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2365704 5401740 CLC_2238 Clostridium botulinum A str. Hall hypothetical protein YP_001388082.1 2365162 R 441771 CDS YP_001388083.1 153935016 5398378 complement(2366062..2366871) 1 NC_009698.1 hypothetical protein 2366871 5398378 CLC_2239 Clostridium botulinum A str. Hall hypothetical protein YP_001388083.1 2366062 R 441771 CDS YP_001388084.1 153937711 5400951 complement(2366747..2366905) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2366905 5400951 CLC_2240 Clostridium botulinum A str. Hall hypothetical protein YP_001388084.1 2366747 R 441771 CDS YP_001388085.1 153937359 5401581 2367171..2368448 1 NC_009698.1 identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2368448 gidA-1 5401581 gidA-1 Clostridium botulinum A str. Hall tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001388085.1 2367171 D 441771 CDS YP_001388086.1 153936597 5399176 complement(2368499..2369929) 1 NC_009698.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2369929 purB 5399176 purB Clostridium botulinum A str. Hall adenylosuccinate lyase YP_001388086.1 2368499 R 441771 CDS YP_001388087.1 153935036 5400351 2370181..2370402 1 NC_009698.1 identified by match to protein family HMM PF04070; hypothetical protein 2370402 5400351 CLC_2243 Clostridium botulinum A str. Hall hypothetical protein YP_001388087.1 2370181 D 441771 CDS YP_001388088.1 153935791 5401457 complement(2370430..2370687) 1 NC_009698.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 2370687 ptsH 5401457 ptsH Clostridium botulinum A str. Hall phosphocarrier protein HPr YP_001388088.1 2370430 R 441771 CDS YP_001388089.1 153935455 5400641 complement(2370798..2371991) 1 NC_009698.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2371991 aspB-3 5400641 aspB-3 Clostridium botulinum A str. Hall aspartate aminotransferase YP_001388089.1 2370798 R 441771 CDS YP_001388090.1 153936912 5399357 complement(2372136..2372492) 1 NC_009698.1 identified by match to protein family HMM PF00892; match to protein family HMM PF00893; hypothetical protein 2372492 5399357 CLC_2246 Clostridium botulinum A str. Hall hypothetical protein YP_001388090.1 2372136 R 441771 CDS YP_001388091.1 153937374 5400098 complement(2372489..2373772) 1 NC_009698.1 hypothetical protein 2373772 5400098 CLC_2247 Clostridium botulinum A str. Hall hypothetical protein YP_001388091.1 2372489 R 441771 CDS YP_001388092.1 153934495 5400306 complement(2373791..2374657) 1 NC_009698.1 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 2374657 5400306 CLC_2248 Clostridium botulinum A str. Hall phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase YP_001388092.1 2373791 R 441771 CDS YP_001388093.1 153934717 5398696 complement(2374820..2375080) 1 NC_009698.1 identified by match to protein family HMM PF04232; stage V sporulation protein S 2375080 spoVS 5398696 spoVS Clostridium botulinum A str. Hall stage V sporulation protein S YP_001388093.1 2374820 R 441771 CDS YP_001388094.1 153935690 5399561 complement(2375219..2376760) 1 NC_009698.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2376760 5399561 CLC_2250 Clostridium botulinum A str. Hall phosphodiesterase YP_001388094.1 2375219 R 441771 CDS YP_001388095.1 153937504 5400808 complement(2376995..2378053) 1 NC_009698.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2378053 recA 5400808 recA Clostridium botulinum A str. Hall recombinase A YP_001388095.1 2376995 R 441771 CDS YP_001388096.1 153935033 5400413 complement(2378201..2378785) 1 NC_009698.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2378785 pgsA 5400413 pgsA Clostridium botulinum A str. Hall CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001388096.1 2378201 R 441771 CDS YP_001388097.1 153935820 5398864 complement(2378769..2380106) 1 NC_009698.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; RNA modification protein 2380106 5398864 CLC_2253 Clostridium botulinum A str. Hall RNA modification protein YP_001388097.1 2378769 R 441771 CDS YP_001388098.1 153936780 5398818 complement(2380201..2382477) 1 NC_009698.1 identified by match to protein family HMM PF01580; DNA translocase FtsK 2382477 ftsK 5398818 ftsK Clostridium botulinum A str. Hall DNA translocase FtsK YP_001388098.1 2380201 R 441771 CDS YP_001388099.1 153934679 5401121 complement(2382958..2383650) 1 NC_009698.1 identified by match to protein family HMM PF00574; Clp protease 2383650 clpP-1 5401121 clpP-1 Clostridium botulinum A str. Hall Clp protease YP_001388099.1 2382958 R 441771 CDS YP_001388100.1 153935207 5399262 complement(2383898..2385103) 1 NC_009698.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase 2385103 dapG 5399262 dapG Clostridium botulinum A str. Hall aspartate kinase YP_001388100.1 2383898 R 441771 CDS YP_001388101.1 153936559 5398247 complement(2385119..2385391) 1 NC_009698.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 2385391 5398247 CLC_2257 Clostridium botulinum A str. Hall PRC-barrel domain-containing protein YP_001388101.1 2385119 R 441771 CDS YP_001388102.1 153937094 5400366 complement(2385468..2386769) 1 NC_009698.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2386769 5400366 CLC_2258 Clostridium botulinum A str. Hall M16 family peptidase YP_001388102.1 2385468 R 441771 CDS YP_001388103.1 153934955 5400150 complement(2386944..2389052) 1 NC_009698.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 2389052 pnpA 5400150 pnpA Clostridium botulinum A str. Hall polynucleotide phosphorylase YP_001388103.1 2386944 R 441771 CDS YP_001388104.1 153935901 5400628 complement(2389316..2389630) 1 NC_009698.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2389630 rpsO 5400628 rpsO Clostridium botulinum A str. Hall 30S ribosomal protein S15 YP_001388104.1 2389316 R 441771 CDS YP_001388105.1 153936853 5400401 complement(2389712..2390632) 1 NC_009698.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 2390632 ribF 5400401 ribF Clostridium botulinum A str. Hall bifunctional riboflavin kinase/FMN adenylyltransferase YP_001388105.1 2389712 R 441771 CDS YP_001388106.1 153937079 5400940 complement(2390645..2391514) 1 NC_009698.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2391514 truB 5400940 truB Clostridium botulinum A str. Hall tRNA pseudouridine synthase B YP_001388106.1 2390645 R 441771 CDS YP_001388107.1 153934519 5401353 complement(2391515..2392477) 1 NC_009698.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 2392477 5401353 CLC_2263 Clostridium botulinum A str. Hall DHH family protein YP_001388107.1 2391515 R 441771 CDS YP_001388108.1 153935306 5401265 complement(2392467..2392829) 1 NC_009698.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2392829 rbfA 5401265 rbfA Clostridium botulinum A str. Hall ribosome-binding factor A YP_001388108.1 2392467 R 441771 CDS YP_001388109.1 153936032 5398735 complement(2392860..2394926) 1 NC_009698.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2394926 infB 5398735 infB Clostridium botulinum A str. Hall translation initiation factor IF-2 YP_001388109.1 2392860 R 441771 CDS YP_001388110.1 153936732 5399327 complement(2394944..2395261) 1 NC_009698.1 identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein 2395261 5399327 CLC_2266 Clostridium botulinum A str. Hall ribosomal protein L7Ae family protein YP_001388110.1 2394944 R 441771 CDS YP_001388111.1 153937518 5400422 complement(2395248..2395520) 1 NC_009698.1 identified by match to protein family HMM PF04296; hypothetical protein 2395520 5400422 CLC_2267 Clostridium botulinum A str. Hall hypothetical protein YP_001388111.1 2395248 R 441771 CDS YP_001388112.1 153936194 5401549 complement(2395580..2396953) 1 NC_009698.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 2396953 nusA 5401549 nusA Clostridium botulinum A str. Hall transcription elongation factor NusA YP_001388112.1 2395580 R 441771 CDS YP_001388113.1 153935745 5398878 complement(2396970..2397431) 1 NC_009698.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 2397431 5398878 CLC_2269 Clostridium botulinum A str. Hall hypothetical protein YP_001388113.1 2396970 R 441771 CDS YP_001388114.1 153935522 5398593 complement(2397736..2402034) 1 NC_009698.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 2402034 polC 5398593 polC Clostridium botulinum A str. Hall DNA polymerase III PolC YP_001388114.1 2397736 R 441771 CDS YP_001388115.1 153934543 5398917 complement(2402313..2403362) 1 NC_009698.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2403362 ispG 5398917 ispG Clostridium botulinum A str. Hall 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001388115.1 2402313 R 441771 CDS YP_001388116.1 153937005 5398259 complement(2403503..2404513) 1 NC_009698.1 identified by match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 2404513 5398259 CLC_2272 Clostridium botulinum A str. Hall membrane-associated zinc metalloprotease YP_001388116.1 2403503 R 441771 CDS YP_001388117.1 153936048 5399283 complement(2404558..2405715) 1 NC_009698.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2405715 dxr 5399283 dxr Clostridium botulinum A str. Hall 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001388117.1 2404558 R 441771 CDS YP_001388118.1 153937361 5398235 complement(2405752..2406732) 1 NC_009698.1 identified by match to protein family HMM PF01594; hypothetical protein 2406732 5398235 CLC_2274 Clostridium botulinum A str. Hall hypothetical protein YP_001388118.1 2405752 R 441771 CDS YP_001388119.1 153936827 5399178 complement(2406832..2406954) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2406954 5399178 CLC_2275 Clostridium botulinum A str. Hall hypothetical protein YP_001388119.1 2406832 R 441771 CDS YP_001388120.1 153935456 5399128 complement(2407013..2407201) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2407201 5399128 CLC_2276 Clostridium botulinum A str. Hall hypothetical protein YP_001388120.1 2407013 R 441771 CDS YP_001388121.1 153934869 5399358 complement(2407387..2408184) 1 NC_009698.1 identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 2408184 cdsA 5399358 cdsA Clostridium botulinum A str. Hall phosphatidate cytidylyltransferase YP_001388121.1 2407387 R 441771 CDS YP_001388122.1 153937234 5399256 complement(2408209..2408967) 1 NC_009698.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 2408967 uppS 5399256 uppS Clostridium botulinum A str. Hall undecaprenyl pyrophosphate synthase YP_001388122.1 2408209 R 441771 CDS YP_001388123.1 153934708 5400656 complement(2409033..2409587) 1 NC_009698.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2409587 frr 5400656 frr Clostridium botulinum A str. Hall ribosome recycling factor YP_001388123.1 2409033 R 441771 CDS YP_001388124.1 153937211 5401622 complement(2409603..2410319) 1 NC_009698.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2410319 pyrH 5401622 pyrH Clostridium botulinum A str. Hall uridylate kinase YP_001388124.1 2409603 R 441771 CDS YP_001388126.1 153935712 5399341 complement(2410694..2411617) 1 NC_009698.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2411617 tsf 5399341 tsf Clostridium botulinum A str. Hall elongation factor Ts YP_001388126.1 2410694 R 441771 CDS YP_001388127.1 153936674 5401075 complement(2411705..2412406) 1 NC_009698.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2412406 rpsB 5401075 rpsB Clostridium botulinum A str. Hall 30S ribosomal protein S2 YP_001388127.1 2411705 R 441771 CDS YP_001388128.1 153937667 5399530 complement(2412643..2413419) 1 NC_009698.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 2413419 codY 5399530 codY Clostridium botulinum A str. Hall transcriptional repressor CodY YP_001388128.1 2412643 R 441771 CDS YP_001388129.1 153935195 5401662 complement(2413626..2415728) 1 NC_009698.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2415728 topA 5401662 topA Clostridium botulinum A str. Hall DNA topoisomerase I YP_001388129.1 2413626 R 441771 CDS YP_001388130.1 153936174 5398687 complement(2416100..2417185) 1 NC_009698.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2417185 dprA 5398687 dprA Clostridium botulinum A str. Hall DNA protecting protein DprA YP_001388130.1 2416100 R 441771 CDS YP_001388131.1 153937157 5401805 2417385..2418908 1 NC_009698.1 identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368; Mg chelatase-like protein 2418908 5401805 CLC_2287 Clostridium botulinum A str. Hall Mg chelatase-like protein YP_001388131.1 2417385 D 441771 CDS YP_001388132.1 153934623 5400050 2418924..2419295 1 NC_009698.1 identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 2419295 5400050 CLC_2288 Clostridium botulinum A str. Hall hypothetical protein YP_001388132.1 2418924 D 441771 CDS YP_001388133.1 153935357 5401760 complement(2419378..2420187) 1 NC_009698.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2420187 rnhB 5401760 rnhB Clostridium botulinum A str. Hall ribonuclease HII YP_001388133.1 2419378 R 441771 CDS YP_001388134.1 153936572 5401465 complement(2420484..2421362) 1 NC_009698.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2421362 rbgA 5401465 rbgA Clostridium botulinum A str. Hall ribosomal biogenesis GTPase YP_001388134.1 2420484 R 441771 CDS YP_001388135.1 153937270 5399121 complement(2421666..2422190) 1 NC_009698.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 2422190 lepB-2 5399121 lepB-2 Clostridium botulinum A str. Hall signal peptidase I YP_001388135.1 2421666 R 441771 CDS YP_001388136.1 153935032 5400441 complement(2422249..2422593) 1 NC_009698.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2422593 rplS 5400441 rplS Clostridium botulinum A str. Hall 50S ribosomal protein L19 YP_001388136.1 2422249 R 441771 CDS YP_001388137.1 153935798 5398863 complement(2422744..2423466) 1 NC_009698.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2423466 trmD 5398863 trmD Clostridium botulinum A str. Hall tRNA (guanine-N(1)-)-methyltransferase YP_001388137.1 2422744 R 441771 CDS YP_001388138.1 153935028 5398788 complement(2423457..2423951) 1 NC_009698.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2423951 rimM 5398788 rimM Clostridium botulinum A str. Hall 16S rRNA-processing protein RimM YP_001388138.1 2423457 R 441771 CDS YP_001388139.1 153936128 5401038 complement(2424064..2424291) 1 NC_009698.1 hypothetical protein 2424291 5401038 CLC_2295 Clostridium botulinum A str. Hall hypothetical protein YP_001388139.1 2424064 R 441771 CDS YP_001388140.1 153934843 5398351 complement(2424312..2424560) 1 NC_009698.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2424560 rpsP 5398351 rpsP Clostridium botulinum A str. Hall 30S ribosomal protein S16 YP_001388140.1 2424312 R 441771 CDS YP_001388141.1 153935337 5399910 complement(2424591..2425940) 1 NC_009698.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 2425940 ffh 5399910 ffh Clostridium botulinum A str. Hall signal recognition particle protein YP_001388141.1 2424591 R 441771 CDS YP_001388142.1 153935263 5399323 complement(2425953..2426285) 1 NC_009698.1 identified by match to protein family HMM PF04297; DNA-binding protein 2426285 5399323 CLC_2298 Clostridium botulinum A str. Hall DNA-binding protein YP_001388142.1 2425953 R 441771 CDS YP_001388143.1 153937568 5399623 complement(2426509..2427420) 1 NC_009698.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 2427420 ftsY 5399623 ftsY Clostridium botulinum A str. Hall signal recognition particle-docking protein FtsY YP_001388143.1 2426509 R 441771 CDS YP_001388144.1 153936718 5401296 complement(2427583..2431164) 1 NC_009698.1 identified by match to protein family HMM PF06470; match to protein family HMM TIGR00650; match to protein family HMM TIGR02168; chromosome segregation protein SMC 2431164 smc 5401296 smc Clostridium botulinum A str. Hall chromosome segregation protein SMC YP_001388144.1 2427583 R 441771 CDS YP_001388145.1 153935530 5399372 complement(2431177..2431305) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2431305 5399372 CLC_2301 Clostridium botulinum A str. Hall hypothetical protein YP_001388145.1 2431177 R 441771 CDS YP_001388146.1 153934827 5401473 complement(2431428..2432519) 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2432519 5401473 CLC_2302 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001388146.1 2431428 R 441771 CDS YP_001388147.1 153937224 5398812 complement(2432512..2433216) 1 NC_009698.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2433216 rnc 5398812 rnc Clostridium botulinum A str. Hall ribonuclease III YP_001388147.1 2432512 R 441771 CDS YP_001388148.1 153937784 5401439 complement(2433328..2433561) 1 NC_009698.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2433561 acpP 5401439 acpP Clostridium botulinum A str. Hall acyl carrier protein YP_001388148.1 2433328 R 441771 CDS YP_001388149.1 153936993 5398731 complement(2433639..2434646) 1 NC_009698.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 2434646 plsX 5398731 plsX Clostridium botulinum A str. Hall glycerol-3-phosphate acyltransferase PlsX YP_001388149.1 2433639 R 441771 CDS YP_001388150.1 153935799 5399722 complement(2434736..2434918) 1 NC_009698.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2434918 rpmF 5399722 rpmF Clostridium botulinum A str. Hall 50S ribosomal protein L32 YP_001388150.1 2434736 R 441771 CDS YP_001388151.1 153935014 5399919 complement(2434932..2435432) 1 NC_009698.1 identified by match to protein family HMM PF02620; ribosomal protein L32 family protein 2435432 5399919 CLC_2307 Clostridium botulinum A str. Hall ribosomal protein L32 family protein YP_001388151.1 2434932 R 441771 CDS YP_001388152.1 153936264 5400371 complement(2435550..2436743) 1 NC_009698.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2436743 ackA 5400371 ackA Clostridium botulinum A str. Hall acetate kinase YP_001388152.1 2435550 R 441771 CDS YP_001388153.1 153935755 5401266 complement(2436883..2437881) 1 NC_009698.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 2437881 eutD 5401266 eutD Clostridium botulinum A str. Hall phosphotransacetylase YP_001388153.1 2436883 R 441771 CDS YP_001388154.1 153935002 5400143 complement(2438215..2439093) 1 NC_009698.1 hypothetical protein 2439093 5400143 CLC_2310 Clostridium botulinum A str. Hall hypothetical protein YP_001388154.1 2438215 R 441771 CDS YP_001388156.1 153936255 5400302 complement(2440209..2440484) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2440484 5400302 CLC_2312 Clostridium botulinum A str. Hall hypothetical protein YP_001388156.1 2440209 R 441771 CDS YP_001388157.1 153935965 5398808 complement(2440493..2442607) 1 NC_009698.1 identified by match to protein family HMM PF09338; D-proline reductase subunit PrdA 2442607 5398808 CLC_2313 Clostridium botulinum A str. Hall D-proline reductase subunit PrdA YP_001388157.1 2440493 R 441771 CDS YP_001388158.1 153934616 5398490 complement(2442640..2442810) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2442810 5398490 CLC_2314 Clostridium botulinum A str. Hall hypothetical protein YP_001388158.1 2442640 R 441771 CDS YP_001388159.1 153937072 5398840 complement(2442832..2443950) 1 NC_009698.1 identified by match to protein family HMM PF01512; electron transport protein 2443950 5398840 CLC_2315 Clostridium botulinum A str. Hall electron transport protein YP_001388159.1 2442832 R 441771 CDS YP_001388160.1 153937628 5400687 complement(2444946..2445842) 1 NC_009698.1 hypothetical protein 2445842 5400687 CLC_2316 Clostridium botulinum A str. Hall hypothetical protein YP_001388160.1 2444946 R 441771 CDS YP_001388161.1 153936136 5399010 complement(2446154..2448172) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 2448172 5399010 CLC_2317 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388161.1 2446154 R 441771 CDS YP_001388162.1 153937306 5400880 complement(2449452..2450537) 1 NC_009698.1 hypothetical protein 2450537 5400880 CLC_2319 Clostridium botulinum A str. Hall hypothetical protein YP_001388162.1 2449452 R 441771 CDS YP_001388163.1 153934996 5401332 complement(2450606..2451682) 1 NC_009698.1 hypothetical protein 2451682 5401332 CLC_2320 Clostridium botulinum A str. Hall hypothetical protein YP_001388163.1 2450606 R 441771 CDS YP_001388164.1 153936569 5399839 complement(2451899..2452096) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2452096 5399839 CLC_2321 Clostridium botulinum A str. Hall hypothetical protein YP_001388164.1 2451899 R 441771 CDS YP_001388165.1 153936839 5401732 2452237..2453682 1 NC_009698.1 identified by match to protein family HMM PF00324; amino acid permease 2453682 5401732 CLC_2322 Clostridium botulinum A str. Hall amino acid permease YP_001388165.1 2452237 D 441771 CDS YP_001388166.1 153937676 5401186 complement(2453835..2454704) 1 NC_009698.1 hypothetical protein 2454704 5401186 CLC_2323 Clostridium botulinum A str. Hall hypothetical protein YP_001388166.1 2453835 R 441771 CDS YP_001388169.1 153937209 5399509 complement(2455229..2456236) 1 NC_009698.1 identified by match to protein family HMM PF05544; proline racemase 2456236 5399509 CLC_2326 Clostridium botulinum A str. Hall proline racemase YP_001388169.1 2455229 R 441771 CDS YP_008472696.1 532643403 5400407 complement(2456250..2456720) 1 NC_009698.1 PrdE protein 2456720 5400407 CLC_2327 Clostridium botulinum A str. Hall PrdE protein YP_008472696.1 2456250 R 441771 CDS YP_001388171.1 153936664 5398341 complement(2456734..2457510) 1 NC_009698.1 PrdD protein 2457510 prdD 5398341 prdD Clostridium botulinum A str. Hall PrdD protein YP_001388171.1 2456734 R 441771 CDS YP_001388173.1 153934813 5398248 complement(2458652..2458927) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2458927 5398248 CLC_2330 Clostridium botulinum A str. Hall hypothetical protein YP_001388173.1 2458652 R 441771 CDS YP_001388174.1 153936312 5400848 complement(2458936..2461047) 1 NC_009698.1 identified by match to protein family HMM PF09338; D-proline reductase subunit PrdA 2461047 prdA 5400848 prdA Clostridium botulinum A str. Hall D-proline reductase subunit PrdA YP_001388174.1 2458936 R 441771 CDS YP_001388175.1 153935144 5399284 complement(2461072..2461248) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2461248 5399284 CLC_2332 Clostridium botulinum A str. Hall hypothetical protein YP_001388175.1 2461072 R 441771 CDS YP_001388176.1 153937803 5399490 complement(2461270..2462388) 1 NC_009698.1 identified by match to protein family HMM PF01512; NADH dehydrogenase 2462388 5399490 CLC_2333 Clostridium botulinum A str. Hall NADH dehydrogenase YP_001388176.1 2461270 R 441771 CDS YP_001388177.1 153936829 5401290 complement(2463029..2463691) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2463691 5401290 CLC_2334 Clostridium botulinum A str. Hall hypothetical protein YP_001388177.1 2463029 R 441771 CDS YP_001388178.1 153936812 5399932 complement(2463731..2465035) 1 NC_009698.1 identified by match to protein family HMM PF01512; electron transport protein 2465035 5399932 CLC_2335 Clostridium botulinum A str. Hall electron transport protein YP_001388178.1 2463731 R 441771 CDS YP_008472697.1 532643409 5401826 complement(2465628..2466155) 1 NC_009698.1 permease 2466155 5401826 CLC_2338 Clostridium botulinum A str. Hall permease YP_008472697.1 2465628 R 441771 CDS YP_001388183.1 153934560 5399653 complement(2466160..2466639) 1 NC_009698.1 hypothetical protein 2466639 5399653 CLC_2339 Clostridium botulinum A str. Hall hypothetical protein YP_001388183.1 2466160 R 441771 CDS YP_001388184.1 153936941 5398918 complement(2466743..2467042) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2467042 5398918 CLC_2341 Clostridium botulinum A str. Hall hypothetical protein YP_001388184.1 2466743 R 441771 CDS YP_001388185.1 153935445 5398466 complement(2467115..2467543) 1 NC_009698.1 PrdA domain-containing protein 2467543 5398466 CLC_2342 Clostridium botulinum A str. Hall PrdA domain-containing protein YP_001388185.1 2467115 R 441771 CDS YP_001388186.1 153937710 5398829 complement(2467574..2468884) 1 NC_009698.1 identified by match to protein family HMM PF01512; electron transport protein 2468884 5398829 CLC_2343 Clostridium botulinum A str. Hall electron transport protein YP_001388186.1 2467574 R 441771 CDS YP_001388187.1 153935046 5398719 complement(2469060..2470814) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00571; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator 2470814 5398719 CLC_2344 Clostridium botulinum A str. Hall sensory box sigma-54 dependent transcriptional regulator YP_001388187.1 2469060 R 441771 CDS YP_001388188.1 153935754 5401580 2471150..2472379 1 NC_009698.1 identified by match to protein family HMM PF05636; hypothetical protein 2472379 5401580 CLC_2345 Clostridium botulinum A str. Hall hypothetical protein YP_001388188.1 2471150 D 441771 CDS YP_001388189.1 153935542 5399290 2472439..2473605 1 NC_009698.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871; nucleoside recognition domain-containing protein 2473605 5399290 CLC_2346 Clostridium botulinum A str. Hall nucleoside recognition domain-containing protein YP_001388189.1 2472439 D 441771 CDS YP_001388190.1 153936734 5399962 complement(2473606..2474130) 1 NC_009698.1 hypothetical protein 2474130 5399962 CLC_2347 Clostridium botulinum A str. Hall hypothetical protein YP_001388190.1 2473606 R 441771 CDS YP_001388191.1 153936443 5399966 complement(2474143..2474637) 1 NC_009698.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2474637 coaD 5399966 coaD Clostridium botulinum A str. Hall phosphopantetheine adenylyltransferase YP_001388191.1 2474143 R 441771 CDS YP_001388192.1 153937379 5400424 complement(2474639..2475196) 1 NC_009698.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 2475196 5400424 CLC_2349 Clostridium botulinum A str. Hall methyltransferase YP_001388192.1 2474639 R 441771 CDS YP_001388193.1 153935165 5398779 complement(2475458..2477497) 1 NC_009698.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2477497 recG 5398779 recG Clostridium botulinum A str. Hall ATP-dependent DNA helicase RecG YP_001388193.1 2475458 R 441771 CDS YP_001388194.1 153936124 5401054 complement(2477847..2479472) 1 NC_009698.1 identified by match to protein family HMM PF02734; DAK2 domain-containing protein 2479472 5401054 CLC_2351 Clostridium botulinum A str. Hall DAK2 domain-containing protein YP_001388194.1 2477847 R 441771 CDS YP_001388195.1 153935340 5399611 complement(2479487..2479837) 1 NC_009698.1 identified by match to protein family HMM PF03780; hypothetical protein 2479837 5399611 CLC_2352 Clostridium botulinum A str. Hall hypothetical protein YP_001388195.1 2479487 R 441771 CDS YP_001388196.1 153936315 5399738 2480037..2480228 1 NC_009698.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2480228 rpmB 5399738 rpmB Clostridium botulinum A str. Hall 50S ribosomal protein L28 YP_001388196.1 2480037 D 441771 CDS YP_001388197.1 153937300 5399780 complement(2480277..2480396) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2480396 5399780 CLC_2354 Clostridium botulinum A str. Hall hypothetical protein YP_001388197.1 2480277 R 441771 CDS YP_001388198.1 153934856 5399493 complement(2480474..2480629) 1 NC_009698.1 hypothetical protein 2480629 5399493 CLC_2355 Clostridium botulinum A str. Hall hypothetical protein YP_001388198.1 2480474 R 441771 CDS YP_001388199.1 153936153 5401370 complement(2481007..2481651) 1 NC_009698.1 identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 2481651 5401370 CLC_2356 Clostridium botulinum A str. Hall thiamine pyrophosphokinase YP_001388199.1 2481007 R 441771 CDS YP_001388200.1 153936705 5398324 complement(2481653..2482303) 1 NC_009698.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 2482303 rpe 5398324 rpe Clostridium botulinum A str. Hall ribulose-phosphate 3-epimerase YP_001388200.1 2481653 R 441771 CDS YP_001388201.1 153937033 5400963 complement(2482297..2483175) 1 NC_009698.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2483175 rsgA 5400963 rsgA Clostridium botulinum A str. Hall ribosome-associated GTPase YP_001388201.1 2482297 R 441771 CDS YP_001388202.1 153935561 5399113 complement(2483382..2485325) 1 NC_009698.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714; protein kinase 2485325 5399113 CLC_2359 Clostridium botulinum A str. Hall protein kinase YP_001388202.1 2483382 R 441771 CDS YP_001388203.1 153935030 5399093 complement(2485303..2486052) 1 NC_009698.1 identified by match to protein family HMM PF00481; protein phosphatase 2486052 5399093 CLC_2360 Clostridium botulinum A str. Hall protein phosphatase YP_001388203.1 2485303 R 441771 CDS YP_001388204.1 153937048 5398523 complement(2486071..2487099) 1 NC_009698.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2487099 5398523 CLC_2361 Clostridium botulinum A str. Hall ribosomal RNA large subunit methyltransferase N YP_001388204.1 2486071 R 441771 CDS YP_001388205.1 153936344 5398861 complement(2487111..2488439) 1 NC_009698.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; ribosomal RNA small subunit methyltransferase B 2488439 sun 5398861 sun Clostridium botulinum A str. Hall ribosomal RNA small subunit methyltransferase B YP_001388205.1 2487111 R 441771 CDS YP_001388206.1 153935725 5400524 complement(2488460..2489176) 1 NC_009698.1 identified by match to protein family HMM PF04298; neutral zinc metallopeptidase 2489176 5400524 CLC_2363 Clostridium botulinum A str. Hall neutral zinc metallopeptidase YP_001388206.1 2488460 R 441771 CDS YP_001388207.1 153934523 5399646 complement(2489494..2490435) 1 NC_009698.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2490435 fmt 5399646 fmt Clostridium botulinum A str. Hall methionyl-tRNA formyltransferase YP_001388207.1 2489494 R 441771 CDS YP_001388208.1 153937071 5398922 complement(2490452..2490895) 1 NC_009698.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2490895 def 5398922 def Clostridium botulinum A str. Hall peptide deformylase YP_001388208.1 2490452 R 441771 CDS YP_001388209.1 153937769 5400632 complement(2490923..2493130) 1 NC_009698.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 2493130 priA 5400632 priA Clostridium botulinum A str. Hall primosome assembly protein PriA YP_001388209.1 2490923 R 441771 CDS YP_001388210.1 153937001 5400686 complement(2493468..2494655) 1 NC_009698.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 2494655 coaBC 5400686 coaBC Clostridium botulinum A str. Hall bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001388210.1 2493468 R 441771 CDS YP_001388211.1 153934699 5401681 complement(2494657..2494875) 1 NC_009698.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2494875 rpoZ 5401681 rpoZ Clostridium botulinum A str. Hall DNA-directed RNA polymerase subunit omega YP_001388211.1 2494657 R 441771 CDS YP_001388212.1 153937415 5399279 complement(2494856..2495485) 1 NC_009698.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2495485 gmk 5399279 gmk Clostridium botulinum A str. Hall guanylate kinase YP_001388212.1 2494856 R 441771 CDS YP_001388213.1 153937426 5401176 complement(2495485..2495760) 1 NC_009698.1 identified by match to protein family HMM PF04025; hypothetical protein 2495760 5401176 CLC_2370 Clostridium botulinum A str. Hall hypothetical protein YP_001388213.1 2495485 R 441771 CDS YP_001388214.1 153935875 5401322 complement(2495776..2496654) 1 NC_009698.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; hypothetical protein 2496654 5401322 CLC_2371 Clostridium botulinum A str. Hall hypothetical protein YP_001388214.1 2495776 R 441771 CDS YP_001388215.1 153934910 5399172 complement(2496848..2497849) 1 NC_009698.1 identified by match to protein family HMM PF00710; type II L-asparaginase 2497849 ansA 5399172 ansA Clostridium botulinum A str. Hall type II L-asparaginase YP_001388215.1 2496848 R 441771 CDS YP_001388216.1 153937060 5398263 2498400..2498561 1 NC_009698.1 hypothetical protein 2498561 5398263 CLC_2373 Clostridium botulinum A str. Hall hypothetical protein YP_001388216.1 2498400 D 441771 CDS YP_001388217.1 153936327 5398475 complement(2499289..2500770) 1 NC_009698.1 identified by match to protein family HMM TIGR02836; stage IV sporulation protein A 2500770 spoIVA 5398475 spoIVA Clostridium botulinum A str. Hall stage IV sporulation protein A YP_001388217.1 2499289 R 441771 CDS YP_001388220.1 153937861 5401313 complement(2501367..2502365) 1 NC_009698.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2502365 gpsA 5401313 gpsA Clostridium botulinum A str. Hall NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001388220.1 2501367 R 441771 CDS YP_001388221.1 153936714 5399137 complement(2502536..2503855) 1 NC_009698.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2503855 engA 5399137 engA Clostridium botulinum A str. Hall GTP-binding protein EngA YP_001388221.1 2502536 R 441771 CDS YP_001388222.1 153937400 5400761 complement(2503858..2505192) 1 NC_009698.1 identified by match to protein family HMM PF04459; hypothetical protein 2505192 5400761 CLC_2379 Clostridium botulinum A str. Hall hypothetical protein YP_001388222.1 2503858 R 441771 CDS YP_001388223.1 153935273 5399368 complement(2505644..2506297) 1 NC_009698.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 2506297 phoU 5399368 phoU Clostridium botulinum A str. Hall phosphate transport system regulatory protein PhoU YP_001388223.1 2505644 R 441771 CDS YP_001388224.1 153936026 5401434 complement(2506327..2507076) 1 NC_009698.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 2507076 pstB 5401434 pstB Clostridium botulinum A str. Hall phosphate transporter ATP-binding protein YP_001388224.1 2506327 R 441771 CDS YP_001388225.1 153937196 5399206 complement(2507089..2507973) 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 2507973 pstA 5399206 pstA Clostridium botulinum A str. Hall phosphate ABC transporter permease YP_001388225.1 2507089 R 441771 CDS YP_001388226.1 153934474 5399976 complement(2507973..2508896) 1 NC_009698.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 2508896 pstC 5399976 pstC Clostridium botulinum A str. Hall phosphate ABC transporter permease YP_001388226.1 2507973 R 441771 CDS YP_001388227.1 153935673 5398704 complement(2509104..2509976) 1 NC_009698.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 2509976 pstS 5398704 pstS Clostridium botulinum A str. Hall phosphate ABC transporter substrate-binding protein YP_001388227.1 2509104 R 441771 CDS YP_001388228.1 153936407 5398646 complement(2510223..2511932) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; phosphate regulon sensor protein 2511932 5398646 CLC_2385 Clostridium botulinum A str. Hall phosphate regulon sensor protein YP_001388228.1 2510223 R 441771 CDS YP_001388229.1 153937638 5398564 complement(2511944..2512642) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; phosphate regulon DNA-binding response regulator 2512642 5398564 CLC_2386 Clostridium botulinum A str. Hall phosphate regulon DNA-binding response regulator YP_001388229.1 2511944 R 441771 CDS YP_001388230.1 153935291 5401273 complement(2512653..2513372) 1 NC_009698.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 2513372 5401273 CLC_2387 Clostridium botulinum A str. Hall hypothetical protein YP_001388230.1 2512653 R 441771 CDS YP_001388231.1 153935986 5401573 complement(2513821..2514276) 1 NC_009698.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 2514276 nrdR 5401573 nrdR Clostridium botulinum A str. Hall transcriptional regulator NrdR YP_001388231.1 2513821 R 441771 CDS YP_001388232.1 153935934 5399658 complement(2514407..2514670) 1 NC_009698.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888; PRC-barrel domain-containing protein 2514670 5399658 CLC_2389 Clostridium botulinum A str. Hall PRC-barrel domain-containing protein YP_001388232.1 2514407 R 441771 CDS YP_001388233.1 153936833 5400966 complement(2514817..2515590) 1 NC_009698.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 2515590 sigG 5400966 sigG Clostridium botulinum A str. Hall sporulation sigma factor SigG YP_001388233.1 2514817 R 441771 CDS YP_001388234.1 153937804 5401374 complement(2515665..2516372) 1 NC_009698.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 2516372 sigE 5401374 sigE Clostridium botulinum A str. Hall sporulation sigma factor SigE YP_001388234.1 2515665 R 441771 CDS YP_001388235.1 153935127 5399631 complement(2516384..2517181) 1 NC_009698.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854; sporulation factor SpoIIGA 2517181 spoIIGA 5399631 spoIIGA Clostridium botulinum A str. Hall sporulation factor SpoIIGA YP_001388235.1 2516384 R 441771 CDS YP_001388236.1 153934584 5399933 complement(2517494..2518603) 1 NC_009698.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2518603 ftsZ 5399933 ftsZ Clostridium botulinum A str. Hall cell division protein FtsZ YP_001388236.1 2517494 R 441771 CDS YP_001388237.1 153935326 5398269 complement(2518626..2519879) 1 NC_009698.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 2519879 ftsA 5398269 ftsA Clostridium botulinum A str. Hall cell division protein FtsA YP_001388237.1 2518626 R 441771 CDS YP_001388238.1 153936534 5398607 complement(2520036..2521310) 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2521310 5398607 CLC_2395 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001388238.1 2520036 R 441771 CDS YP_001388239.1 153937351 5399460 2521748..2521891 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2521891 5399460 CLC_2396 Clostridium botulinum A str. Hall hypothetical protein YP_001388239.1 2521748 D 441771 CDS YP_001388240.1 153935003 5400673 complement(2521969..2523021) 1 NC_009698.1 identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein 2523021 pilT 5400673 pilT Clostridium botulinum A str. Hall twitching motility protein YP_001388240.1 2521969 R 441771 CDS YP_001388241.1 153935774 5399448 complement(2523023..2523799) 1 NC_009698.1 identified by match to protein family HMM PF01488; match to protein family HMM PF08501; shikimate 5-dehydrogenase 2523799 aroE 5399448 aroE Clostridium botulinum A str. Hall shikimate 5-dehydrogenase YP_001388241.1 2523023 R 441771 CDS YP_001388242.1 153936370 5400284 complement(2523938..2524228) 1 NC_009698.1 identified by match to protein family HMM PF04545; DNA-dependent RNA polymerase sigma subunit 2524228 5400284 CLC_2399 Clostridium botulinum A str. Hall DNA-dependent RNA polymerase sigma subunit YP_001388242.1 2523938 R 441771 CDS YP_001388243.1 153934857 5401256 complement(2524280..2524399) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2524399 5401256 CLC_2400 Clostridium botulinum A str. Hall hypothetical protein YP_001388243.1 2524280 R 441771 CDS YP_001388244.1 153935604 5398905 2524633..2524881 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2524881 5398905 CLC_2401 Clostridium botulinum A str. Hall DNA-binding protein YP_001388244.1 2524633 D 441771 CDS YP_001388245.1 153936860 5398325 2525081..2525326 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2525326 5398325 CLC_2402 Clostridium botulinum A str. Hall DNA-binding protein YP_001388245.1 2525081 D 441771 CDS YP_001388246.1 153937603 5399230 2525316..2525540 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2525540 5399230 CLC_2403 Clostridium botulinum A str. Hall hypothetical protein YP_001388246.1 2525316 D 441771 CDS YP_001388247.1 153935073 5401558 complement(2525578..2526087) 1 NC_009698.1 lipoprotein 2526087 5401558 CLC_2404 Clostridium botulinum A str. Hall lipoprotein YP_001388247.1 2525578 R 441771 CDS YP_001388248.1 153935779 5400469 complement(2526155..2526304) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2526304 5400469 CLC_2405 Clostridium botulinum A str. Hall hypothetical protein YP_001388248.1 2526155 R 441771 CDS YP_001388249.1 153936514 5400125 complement(2526282..2527190) 1 NC_009698.1 identified by match to protein family HMM PF01076; plasmid recombination enzyme 2527190 5400125 CLC_2406 Clostridium botulinum A str. Hall plasmid recombination enzyme YP_001388249.1 2526282 R 441771 CDS YP_001388250.1 153937660 5400286 complement(2527181..2528803) 1 NC_009698.1 identified by match to protein family HMM PF02534; TraG/TraD family protein 2528803 5400286 CLC_2407 Clostridium botulinum A str. Hall TraG/TraD family protein YP_001388250.1 2527181 R 441771 CDS YP_001388251.1 153937051 5400879 complement(2529240..2529440) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 2529440 5400879 CLC_2408 Clostridium botulinum A str. Hall DNA-binding protein YP_001388251.1 2529240 R 441771 CDS YP_001388252.1 153934741 5401655 complement(2529679..2530383) 1 NC_009698.1 identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 2530383 5401655 CLC_2409 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001388252.1 2529679 R 441771 CDS YP_001388253.1 153937749 5398883 complement(2530423..2530617) 1 NC_009698.1 hypothetical protein 2530617 5398883 CLC_2410 Clostridium botulinum A str. Hall hypothetical protein YP_001388253.1 2530423 R 441771 CDS YP_001388254.1 153936204 5399536 complement(2530631..2530885) 1 NC_009698.1 hypothetical protein 2530885 5399536 CLC_2411 Clostridium botulinum A str. Hall hypothetical protein YP_001388254.1 2530631 R 441771 CDS YP_001388255.1 153935878 5401694 complement(2530964..2531839) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2531839 5401694 CLC_2412 Clostridium botulinum A str. Hall hypothetical protein YP_001388255.1 2530964 R 441771 CDS YP_001388256.1 153935135 5398799 complement(2531991..2532164) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2532164 5398799 CLC_2413 Clostridium botulinum A str. Hall hypothetical protein YP_001388256.1 2531991 R 441771 CDS YP_001388257.1 153937241 5400809 complement(2532388..2532930) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2532930 5400809 CLC_2414 Clostridium botulinum A str. Hall hypothetical protein YP_001388257.1 2532388 R 441771 CDS YP_001388258.1 153936219 5400357 complement(2533415..2534083) 1 NC_009698.1 identified by match to protein family HMM TIGR02271; hypothetical protein 2534083 5400357 CLC_2415 Clostridium botulinum A str. Hall hypothetical protein YP_001388258.1 2533415 R 441771 CDS YP_001388259.1 153934992 5399791 complement(2534162..2534638) 1 NC_009698.1 identified by match to protein family HMM TIGR02271; hypothetical protein 2534638 5399791 CLC_2416 Clostridium botulinum A str. Hall hypothetical protein YP_001388259.1 2534162 R 441771 CDS YP_001388260.1 153934858 5401765 complement(2535691..2535975) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2535975 5401765 CLC_2419 Clostridium botulinum A str. Hall hypothetical protein YP_001388260.1 2535691 R 441771 CDS YP_001388261.1 153936851 5398645 complement(2535986..2536789) 1 NC_009698.1 hypothetical protein 2536789 5398645 CLC_2420 Clostridium botulinum A str. Hall hypothetical protein YP_001388261.1 2535986 R 441771 CDS YP_001388262.1 153937609 5398326 complement(2536770..2537573) 1 NC_009698.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR00616; recombinase 2537573 5398326 CLC_2421 Clostridium botulinum A str. Hall recombinase YP_001388262.1 2536770 R 441771 CDS YP_001388264.1 153934826 5398398 2538221..2538373 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2538373 5398398 CLC_2423 Clostridium botulinum A str. Hall hypothetical protein YP_001388264.1 2538221 D 441771 CDS YP_001388265.1 153937302 5400228 complement(2538591..2540261) 1 NC_009698.1 identified by match to protein family HMM PF00905; penicillin-binding protein 2540261 5400228 CLC_2424 Clostridium botulinum A str. Hall penicillin-binding protein YP_001388265.1 2538591 R 441771 CDS YP_001388266.1 153936743 5398811 complement(2540347..2540967) 1 NC_009698.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2540967 udk 5398811 udk Clostridium botulinum A str. Hall uridine kinase YP_001388266.1 2540347 R 441771 CDS YP_001388267.1 153936154 5401328 complement(2541115..2542341) 1 NC_009698.1 identified by match to protein family HMM PF01136; U32 family peptidase 2542341 5401328 CLC_2426 Clostridium botulinum A str. Hall U32 family peptidase YP_001388267.1 2541115 R 441771 CDS YP_001388268.1 153937820 5398541 complement(2542334..2542990) 1 NC_009698.1 identified by match to protein family HMM PF01596; O-methyltransferase 2542990 5398541 CLC_2427 Clostridium botulinum A str. Hall O-methyltransferase YP_001388268.1 2542334 R 441771 CDS YP_001388269.1 153936873 5400964 complement(2543073..2544104) 1 NC_009698.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 2544104 5400964 CLC_2428 Clostridium botulinum A str. Hall hypothetical protein YP_001388269.1 2543073 R 441771 CDS YP_001388270.1 153936285 5400299 complement(2544182..2546008) 1 NC_009698.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 2546008 typA 5400299 typA Clostridium botulinum A str. Hall GTP-binding protein TypA YP_001388270.1 2544182 R 441771 CDS YP_001388271.1 153935734 5400271 complement(2546652..2548361) 1 NC_009698.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; RNA-metabolizing metallo-beta-lactamase 2548361 5400271 CLC_2430 Clostridium botulinum A str. Hall RNA-metabolizing metallo-beta-lactamase YP_001388271.1 2546652 R 441771 CDS YP_001388272.1 153935914 5401104 complement(2548409..2548861) 1 NC_009698.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2548861 5401104 CLC_2431 Clostridium botulinum A str. Hall FUR family transcriptional regulator YP_001388272.1 2548409 R 441771 CDS YP_001388273.1 153935578 5401427 complement(2548983..2549237) 1 NC_009698.1 identified by match to protein family HMM PF06949; hypothetical protein 2549237 5401427 CLC_2432 Clostridium botulinum A str. Hall hypothetical protein YP_001388273.1 2548983 R 441771 CDS YP_001388274.1 153935898 5400502 complement(2549251..2549664) 1 NC_009698.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2549664 5400502 CLC_2433 Clostridium botulinum A str. Hall Holliday junction resolvase-like protein YP_001388274.1 2549251 R 441771 CDS YP_001388275.1 153934954 5398414 complement(2549871..2550122) 1 NC_009698.1 identified by match to protein family HMM PF06135; hypothetical protein 2550122 5398414 CLC_2434 Clostridium botulinum A str. Hall hypothetical protein YP_001388275.1 2549871 R 441771 CDS YP_001388276.1 153937856 5400398 complement(2550237..2552876) 1 NC_009698.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2552876 alaS 5400398 alaS Clostridium botulinum A str. Hall alanyl-tRNA synthetase YP_001388276.1 2550237 R 441771 CDS YP_001388277.1 153936838 5400627 complement(2553375..2554403) 1 NC_009698.1 identified by match to protein family HMM PF01594; hypothetical protein 2554403 5400627 CLC_2436 Clostridium botulinum A str. Hall hypothetical protein YP_001388277.1 2553375 R 441771 CDS YP_001388278.1 153936848 5401518 complement(2554416..2554904) 1 NC_009698.1 PRC-barrel domain-containing protein 2554904 5401518 CLC_2437 Clostridium botulinum A str. Hall PRC-barrel domain-containing protein YP_001388278.1 2554416 R 441771 CDS YP_001388280.1 153937102 5401722 complement(2555086..2555514) 1 NC_009698.1 identified by match to protein family HMM PF01592; iron-sulfur cluster assembly protein 2555514 5401722 CLC_2439 Clostridium botulinum A str. Hall iron-sulfur cluster assembly protein YP_001388280.1 2555086 R 441771 CDS YP_001388281.1 153936576 5400887 complement(2555516..2556709) 1 NC_009698.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 2556709 iscS-2 5400887 iscS-2 Clostridium botulinum A str. Hall cysteine desulfurase YP_001388281.1 2555516 R 441771 CDS YP_001388282.1 153936580 5400894 complement(2556702..2557148) 1 NC_009698.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrF2 family protein 2557148 5400894 CLC_2441 Clostridium botulinum A str. Hall rrF2 family protein YP_001388282.1 2556702 R 441771 CDS YP_001388283.1 153936060 5399125 complement(2557368..2558618) 1 NC_009698.1 identified by match to protein family HMM PF00004; recombination factor protein RarA 2558618 5399125 CLC_2442 Clostridium botulinum A str. Hall recombination factor protein RarA YP_001388283.1 2557368 R 441771 CDS YP_001388284.1 153937403 5399182 complement(2559016..2559783) 1 NC_009698.1 identified by match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol-phosphatase 2559783 hisK 5399182 hisK Clostridium botulinum A str. Hall histidinol-phosphatase YP_001388284.1 2559016 R 441771 CDS YP_001388285.1 153937559 5398637 complement(2560150..2561058) 1 NC_009698.1 identified by match to protein family HMM PF03547; auxin efflux carrier family protein 2561058 5398637 CLC_2444 Clostridium botulinum A str. Hall auxin efflux carrier family protein YP_001388285.1 2560150 R 441771 CDS YP_001388286.1 153935499 5400715 complement(2561166..2562032) 1 NC_009698.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762; DegV family protein 2562032 5400715 CLC_2445 Clostridium botulinum A str. Hall DegV family protein YP_001388286.1 2561166 R 441771 CDS YP_001388287.1 153936496 5399803 2562360..2562944 1 NC_009698.1 identified by match to protein family HMM PF01206; hypothetical protein 2562944 5399803 CLC_2446 Clostridium botulinum A str. Hall hypothetical protein YP_001388287.1 2562360 D 441771 CDS YP_001388288.1 153935547 5399667 complement(2563196..2564185) 1 NC_009698.1 catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 2564185 5399667 CLC_2447 Clostridium botulinum A str. Hall ornithine cyclodeaminase YP_001388288.1 2563196 R 441771 CDS YP_001388289.1 153934880 5401156 complement(2566420..2567754) 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 2567754 5401156 CLC_2449 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001388289.1 2566420 R 441771 CDS YP_001388290.1 153934576 5400446 2568131..2568784 1 NC_009698.1 hypothetical protein 2568784 5400446 CLC_2450 Clostridium botulinum A str. Hall hypothetical protein YP_001388290.1 2568131 D 441771 CDS YP_001388291.1 153935072 5401547 complement(2568922..2569398) 1 NC_009698.1 copper amine oxidase domain-containing protein 2569398 5401547 CLC_2451 Clostridium botulinum A str. Hall copper amine oxidase domain-containing protein YP_001388291.1 2568922 R 441771 CDS YP_001388292.1 153937049 5401779 complement(2569762..2573523) 1 NC_009698.1 identified by match to protein family HMM PF02769; match to protein family HMM TIGR01857; phosphoribosylformylglycinamidine synthase 2573523 5401779 CLC_2452 Clostridium botulinum A str. Hall phosphoribosylformylglycinamidine synthase YP_001388292.1 2569762 R 441771 CDS YP_001388293.1 153936159 5400124 complement(2573722..2575071) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2575071 5400124 CLC_2453 Clostridium botulinum A str. Hall MATE efflux family protein YP_001388293.1 2573722 R 441771 CDS YP_001388294.1 153935650 5400525 complement(2575068..2577545) 1 NC_009698.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326; phosphoenolpyruvate synthase 2577545 5400525 CLC_2454 Clostridium botulinum A str. Hall phosphoenolpyruvate synthase YP_001388294.1 2575068 R 441771 CDS YP_001388295.1 153934728 5400817 complement(2577550..2577825) 1 NC_009698.1 acyl carrier protein 2577825 5400817 CLC_2455 Clostridium botulinum A str. Hall acyl carrier protein YP_001388295.1 2577550 R 441771 CDS YP_001388296.1 153934862 5401612 complement(2577831..2579369) 1 NC_009698.1 identified by match to protein family HMM PF00501; acyl-CoA synthetase 2579369 5401612 CLC_2456 Clostridium botulinum A str. Hall acyl-CoA synthetase YP_001388296.1 2577831 R 441771 CDS YP_001388297.1 153937055 5400855 complement(2579386..2580396) 1 NC_009698.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; 3-oxoacyl-(acyl-carrier-protein) synthase III 2580396 5400855 CLC_2457 Clostridium botulinum A str. Hall 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001388297.1 2579386 R 441771 CDS YP_001388298.1 153936761 5399524 complement(2580405..2581262) 1 NC_009698.1 bacT protein 2581262 5399524 CLC_2458 Clostridium botulinum A str. Hall bacT protein YP_001388298.1 2580405 R 441771 CDS YP_001388299.1 153935605 5398887 complement(2581303..2583132) 1 NC_009698.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; nonribosomal peptide synthetase 2583132 5398887 CLC_2459 Clostridium botulinum A str. Hall nonribosomal peptide synthetase YP_001388299.1 2581303 R 441771 CDS YP_001388300.1 153937561 5400063 complement(2583173..2583685) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 2583685 5400063 CLC_2460 Clostridium botulinum A str. Hall acetyltransferase YP_001388300.1 2583173 R 441771 CDS YP_001388301.1 153937630 5399231 complement(2583689..2583937) 1 NC_009698.1 D-alanyl carrier protein-like protein 2583937 5399231 CLC_2461 Clostridium botulinum A str. Hall D-alanyl carrier protein-like protein YP_001388301.1 2583689 R 441771 CDS YP_001388302.1 153935615 5399805 complement(2583946..2584962) 1 NC_009698.1 hypothetical protein 2584962 5399805 CLC_2462 Clostridium botulinum A str. Hall hypothetical protein YP_001388302.1 2583946 R 441771 CDS YP_001388303.1 153934863 5399012 complement(2584959..2586152) 1 NC_009698.1 seryl-tRNA synthetase 2586152 5399012 CLC_2463 Clostridium botulinum A str. Hall seryl-tRNA synthetase YP_001388303.1 2584959 R 441771 CDS YP_001388304.1 153937137 5400459 complement(2586171..2586911) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2586911 5400459 CLC_2464 Clostridium botulinum A str. Hall hypothetical protein YP_001388304.1 2586171 R 441771 CDS YP_001388305.1 153934818 5399525 complement(2587377..2588378) 1 NC_009698.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 2588378 argF 5399525 argF Clostridium botulinum A str. Hall ornithine carbamoyltransferase YP_001388305.1 2587377 R 441771 CDS YP_001388306.1 153937097 5400895 complement(2588473..2589417) 1 NC_009698.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2589417 arcC 5400895 arcC Clostridium botulinum A str. Hall carbamate kinase YP_001388306.1 2588473 R 441771 CDS YP_001388307.1 153936348 5399887 complement(2589981..2591222) 1 NC_009698.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2591222 glyA 5399887 glyA Clostridium botulinum A str. Hall serine hydroxymethyltransferase YP_001388307.1 2589981 R 441771 CDS YP_001388308.1 153936030 5400153 2591396..2592166 1 NC_009698.1 identified by match to protein family HMM PF06738; hypothetical protein 2592166 5400153 CLC_2468 Clostridium botulinum A str. Hall hypothetical protein YP_001388308.1 2591396 D 441771 CDS YP_001388309.1 153935279 5399613 2592163..2592651 1 NC_009698.1 hypothetical protein 2592651 5399613 CLC_2469 Clostridium botulinum A str. Hall hypothetical protein YP_001388309.1 2592163 D 441771 CDS YP_001388310.1 153937533 5399980 complement(2592718..2592987) 1 NC_009698.1 identified by match to protein family HMM PF02583; hypothetical protein 2592987 5399980 CLC_2470 Clostridium botulinum A str. Hall hypothetical protein YP_001388310.1 2592718 R 441771 CDS YP_001388311.1 153936068 5398456 complement(2593188..2594012) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 2594012 5398456 CLC_2471 Clostridium botulinum A str. Hall HAD family hydrolase YP_001388311.1 2593188 R 441771 CDS YP_001388312.1 153935066 5398308 2594125..2594601 1 NC_009698.1 lipoprotein 2594601 5398308 CLC_2472 Clostridium botulinum A str. Hall lipoprotein YP_001388312.1 2594125 D 441771 CDS YP_001388313.1 153934500 5398500 2595012..2599877 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2599877 5398500 CLC_2473 Clostridium botulinum A str. Hall hypothetical protein YP_001388313.1 2595012 D 441771 CDS YP_001388314.1 153937014 5401057 2599954..2601177 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2601177 5401057 CLC_2474 Clostridium botulinum A str. Hall hypothetical protein YP_001388314.1 2599954 D 441771 CDS YP_001388315.1 153934956 5399158 2601331..2602386 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2602386 5399158 CLC_2475 Clostridium botulinum A str. Hall hypothetical protein YP_001388315.1 2601331 D 441771 CDS YP_001388316.1 153937502 5400491 2602725..2603417 1 NC_009698.1 hypothetical protein 2603417 5400491 CLC_2476 Clostridium botulinum A str. Hall hypothetical protein YP_001388316.1 2602725 D 441771 CDS YP_001388317.1 153936971 5398367 complement(2603847..2605250) 1 NC_009698.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 1 2605250 5398367 CLC_2477 Clostridium botulinum A str. Hall aminopeptidase 1 YP_001388317.1 2603847 R 441771 CDS YP_001388318.1 153935959 5400411 complement(2605372..2606307) 1 NC_009698.1 identified by match to protein family HMM PF01544; magnesium and cobalt transport protein CorA 2606307 5400411 CLC_2478 Clostridium botulinum A str. Hall magnesium and cobalt transport protein CorA YP_001388318.1 2605372 R 441771 CDS YP_001388319.1 153935478 5400597 complement(2606733..2607287) 1 NC_009698.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 2607287 5400597 CLC_2479 Clostridium botulinum A str. Hall 5-formyltetrahydrofolate cyclo-ligase YP_001388319.1 2606733 R 441771 CDS YP_001388320.1 153934544 5399036 complement(2607280..2608203) 1 NC_009698.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 2608203 hprK 5399036 hprK Clostridium botulinum A str. Hall HPr kinase/phosphorylase YP_001388320.1 2607280 R 441771 CDS YP_001388321.1 153935663 5400321 complement(2608235..2608423) 1 NC_009698.1 identified by match to protein family HMM PF05979; hypothetical protein 2608423 5400321 CLC_2481 Clostridium botulinum A str. Hall hypothetical protein YP_001388321.1 2608235 R 441771 CDS YP_001388322.1 153936425 5398260 complement(2608594..2609331) 1 NC_009698.1 identified by match to protein family HMM PF09335; DedA family protein 2609331 5398260 CLC_2482 Clostridium botulinum A str. Hall DedA family protein YP_001388322.1 2608594 R 441771 CDS YP_001388323.1 153937752 5399588 complement(2609297..2610016) 1 NC_009698.1 identified by match to protein family HMM PF09335; DedA family protein 2610016 5399588 CLC_2483 Clostridium botulinum A str. Hall DedA family protein YP_001388323.1 2609297 R 441771 CDS YP_001388324.1 153935083 5398583 complement(2610125..2611270) 1 NC_009698.1 identified by match to protein family HMM PF02754; hypothetical protein 2611270 5398583 CLC_2484 Clostridium botulinum A str. Hall hypothetical protein YP_001388324.1 2610125 R 441771 CDS YP_001388325.1 153935120 5401702 complement(2611270..2612256) 1 NC_009698.1 hypothetical protein 2612256 5401702 CLC_2485 Clostridium botulinum A str. Hall hypothetical protein YP_001388325.1 2611270 R 441771 CDS YP_001388326.1 153936072 5399816 complement(2612246..2612947) 1 NC_009698.1 hypothetical protein 2612947 5399816 CLC_2486 Clostridium botulinum A str. Hall hypothetical protein YP_001388326.1 2612246 R 441771 CDS YP_001388327.1 153937105 5401152 complement(2612947..2613621) 1 NC_009698.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2613621 5401152 CLC_2487 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001388327.1 2612947 R 441771 CDS YP_001388328.1 153934630 5401754 2613808..2614782 1 NC_009698.1 identified by match to protein family HMM PF00581; thiosulfate sulfurtransferase 2614782 5401754 CLC_2488 Clostridium botulinum A str. Hall thiosulfate sulfurtransferase YP_001388328.1 2613808 D 441771 CDS YP_001388329.1 153936864 5399475 complement(2615016..2615990) 1 NC_009698.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 2615990 glpX 5399475 glpX Clostridium botulinum A str. Hall fructose 1,6-bisphosphatase II YP_001388329.1 2615016 R 441771 CDS YP_001388330.1 153937797 5399544 2616474..2616650 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2616650 5399544 CLC_2490 Clostridium botulinum A str. Hall hypothetical protein YP_001388330.1 2616474 D 441771 CDS YP_001388331.1 153935698 5398678 complement(2616682..2617080) 1 NC_009698.1 hypothetical protein 2617080 5398678 CLC_2491 Clostridium botulinum A str. Hall hypothetical protein YP_001388331.1 2616682 R 441771 CDS YP_001388332.1 153934653 5398273 complement(2617535..2618704) 1 NC_009698.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin 2618704 5398273 CLC_2492 Clostridium botulinum A str. Hall metallo-beta-lactamase/flavodoxin YP_001388332.1 2617535 R 441771 CDS YP_001388333.1 153937126 5401204 complement(2619251..2619757) 1 NC_009698.1 hypothetical protein 2619757 5401204 CLC_2493 Clostridium botulinum A str. Hall hypothetical protein YP_001388333.1 2619251 R 441771 CDS YP_001388334.1 153936221 5400038 complement(2620809..2621672) 1 NC_009698.1 identified by match to protein family HMM PF01156; IUNH family nucleoside hydrolase 2621672 5400038 CLC_2494 Clostridium botulinum A str. Hall IUNH family nucleoside hydrolase YP_001388334.1 2620809 R 441771 CDS YP_001388335.1 153936131 5399903 complement(2621690..2622226) 1 NC_009698.1 identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 2622226 def-3 5399903 def-3 Clostridium botulinum A str. Hall peptide deformylase YP_001388335.1 2621690 R 441771 CDS YP_001388336.1 153935190 5399454 complement(2622443..2623093) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 2623093 5399454 CLC_2496 Clostridium botulinum A str. Hall V-type ATP synthase subunit D YP_001388336.1 2622443 R 441771 CDS YP_001388337.1 153937604 5398354 complement(2623122..2624507) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 2624507 5398354 CLC_2497 Clostridium botulinum A str. Hall V-type ATP synthase subunit B YP_001388337.1 2623122 R 441771 CDS YP_001388338.1 153936651 5398287 complement(2624500..2626278) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 2626278 5398287 CLC_2498 Clostridium botulinum A str. Hall V-type ATP synthase subunit A YP_001388338.1 2624500 R 441771 CDS YP_001388339.1 153936231 5400470 complement(2626292..2626600) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the F subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit F 2626600 5400470 CLC_2499 Clostridium botulinum A str. Hall V-type ATP synthase subunit F YP_001388339.1 2626292 R 441771 CDS YP_001388340.1 153935461 5401139 complement(2626593..2627594) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the C subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit C 2627594 5401139 CLC_2500 Clostridium botulinum A str. Hall V-type ATP synthase subunit C YP_001388340.1 2626593 R 441771 CDS YP_001388341.1 153936093 5398947 complement(2627609..2628208) 1 NC_009698.1 identified by match to protein family HMM PF01991; V-type ATPase, E subunit 2628208 5398947 CLC_2501 Clostridium botulinum A str. Hall V-type ATPase, E subunit YP_001388341.1 2627609 R 441771 CDS YP_001388342.1 153936183 5401061 complement(2628247..2628723) 1 NC_009698.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 2628723 5401061 CLC_2502 Clostridium botulinum A str. Hall V-type ATP synthase subunit K YP_001388342.1 2628247 R 441771 CDS YP_001388343.1 153937354 5399211 complement(2628736..2630697) 1 NC_009698.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 2630697 5399211 CLC_2503 Clostridium botulinum A str. Hall V-type ATP synthase subunit I YP_001388343.1 2628736 R 441771 CDS YP_001388344.1 153934867 5399470 complement(2630684..2631010) 1 NC_009698.1 V-type ATPase, G subunit 2631010 5399470 CLC_2504 Clostridium botulinum A str. Hall V-type ATPase, G subunit YP_001388344.1 2630684 R 441771 CDS YP_001388345.1 153937563 5400166 complement(2631316..2632995) 1 NC_009698.1 identified by match to protein family HMM PF02310; match to protein family HMM PF04055; B12-binding Fe-S oxidoreductase 2632995 5400166 CLC_2505 Clostridium botulinum A str. Hall B12-binding Fe-S oxidoreductase YP_001388345.1 2631316 R 441771 CDS YP_001388346.1 153935294 5399254 complement(2632970..2633545) 1 NC_009698.1 hypothetical protein 2633545 5399254 CLC_2506 Clostridium botulinum A str. Hall hypothetical protein YP_001388346.1 2632970 R 441771 CDS YP_001388347.1 153934518 5399198 complement(2633729..2634436) 1 NC_009698.1 identified by match to protein family HMM PF00882; phospholipase C 2634436 5399198 CLC_2507 Clostridium botulinum A str. Hall phospholipase C YP_001388347.1 2633729 R 441771 CDS YP_001388348.1 153935129 5401264 complement(2635696..2638242) 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; ATPase P 2638242 5401264 CLC_2509 Clostridium botulinum A str. Hall ATPase P YP_001388348.1 2635696 R 441771 CDS YP_001388349.1 153937257 5398613 2638561..2640204 1 NC_009698.1 catalyzes the hydrolysis of pyrophosphate to phosphate; manganese-dependent inorganic pyrophosphatase 2640204 5398613 CLC_2510 Clostridium botulinum A str. Hall manganese-dependent inorganic pyrophosphatase YP_001388349.1 2638561 D 441771 CDS YP_001388350.1 153934580 5398314 complement(2640420..2640998) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2640998 5398314 CLC_2511 Clostridium botulinum A str. Hall hypothetical protein YP_001388350.1 2640420 R 441771 CDS YP_001388351.1 153935902 5399504 complement(2641326..2642117) 1 NC_009698.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have 2 adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 2642117 flgG 5399504 flgG Clostridium botulinum A str. Hall flagellar basal body rod protein FlgG YP_001388351.1 2641326 R 441771 CDS YP_001388352.1 153936688 5398603 complement(2642172..2642939) 1 NC_009698.1 makes up the distal portion of the flagellar basal body rod; the Clostridia have two adjacent copies of the FlgG gene; flagellar basal body rod protein FlgG 2642939 flgG 5398603 flgG Clostridium botulinum A str. Hall flagellar basal body rod protein FlgG YP_001388352.1 2642172 R 441771 CDS YP_001388353.1 153935379 5400402 complement(2643005..2643121) 1 NC_009698.1 hypothetical protein 2643121 5400402 CLC_2514 Clostridium botulinum A str. Hall hypothetical protein YP_001388353.1 2643005 R 441771 CDS YP_001388354.1 153936125 5400991 complement(2643199..2643837) 1 NC_009698.1 hypothetical protein 2643837 5400991 CLC_2515 Clostridium botulinum A str. Hall hypothetical protein YP_001388354.1 2643199 R 441771 CDS YP_001388355.1 153937160 5400608 complement(2643866..2644594) 1 NC_009698.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937; RNA polymerase sigma factor for flagellar operon FliA 2644594 fliA 5400608 fliA Clostridium botulinum A str. Hall RNA polymerase sigma factor for flagellar operon FliA YP_001388355.1 2643866 R 441771 CDS YP_001388356.1 153934700 5399739 complement(2644608..2645267) 1 NC_009698.1 identified by match to protein family HMM PF07238; hypothetical protein 2645267 5399739 CLC_2517 Clostridium botulinum A str. Hall hypothetical protein YP_001388356.1 2644608 R 441771 CDS YP_001388357.1 153934704 5400678 complement(2645282..2646142) 1 NC_009698.1 identified by match to protein family HMM PF01656; flagellar biosynthesis protein FlhG 2646142 flhG 5400678 flhG Clostridium botulinum A str. Hall flagellar biosynthesis protein FlhG YP_001388357.1 2645282 R 441771 CDS YP_001388358.1 153935713 5401713 complement(2646136..2647362) 1 NC_009698.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 2647362 flhF 5401713 flhF Clostridium botulinum A str. Hall flagellar biosynthesis regulator FlhF YP_001388358.1 2646136 R 441771 CDS YP_001388359.1 153935343 5401717 complement(2647359..2649425) 1 NC_009698.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 2649425 flhA 5401717 flhA Clostridium botulinum A str. Hall flagellar biosynthesis protein FlhA YP_001388359.1 2647359 R 441771 CDS YP_001388360.1 153937825 5401077 complement(2649453..2651282) 1 NC_009698.1 FlhB is a membrane protein responsible for substrate specificity in switching from rod/hook-type export to filament-type export; FliR is required for export of flagellar proteins, although a specific role has not yet been determined; bifunctional flagellar biosynthesis protein FliR/FlhB 2651282 5401077 CLC_2521 Clostridium botulinum A str. Hall bifunctional flagellar biosynthesis protein FliR/FlhB YP_001388360.1 2649453 R 441771 CDS YP_001388361.1 153937262 5400791 complement(2651316..2651585) 1 NC_009698.1 identified by match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthesis protein FliQ 2651585 fliQ 5400791 fliQ Clostridium botulinum A str. Hall flagellar biosynthesis protein FliQ YP_001388361.1 2651316 R 441771 CDS YP_001388362.1 153936309 5399797 complement(2651597..2652373) 1 NC_009698.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2652373 fliP 5399797 fliP Clostridium botulinum A str. Hall flagellar biosynthesis protein FliP YP_001388362.1 2651597 R 441771 CDS YP_001388363.1 153935972 5398662 complement(2652357..2652764) 1 NC_009698.1 flagellar biosynthesis domain-containing protein 2652764 5398662 CLC_2524 Clostridium botulinum A str. Hall flagellar biosynthesis domain-containing protein YP_001388363.1 2652357 R 441771 CDS YP_001388364.1 153936730 5401502 complement(2653354..2654097) 1 NC_009698.1 identified by match to protein family HMM PF00691; chemotaxis protein MotB 2654097 motB-2 5401502 motB-2 Clostridium botulinum A str. Hall chemotaxis protein MotB YP_001388364.1 2653354 R 441771 CDS YP_001388365.1 153934553 5399685 complement(2654090..2654902) 1 NC_009698.1 identified by match to protein family HMM PF01618; chemotaxis protein MotA 2654902 motA-2 5399685 motA-2 Clostridium botulinum A str. Hall chemotaxis protein MotA YP_001388365.1 2654090 R 441771 CDS YP_001388366.1 153937276 5400420 complement(2654899..2655108) 1 NC_009698.1 identified by match to protein family HMM PF06289; flagellar protein FlbD 2655108 5400420 CLC_2528 Clostridium botulinum A str. Hall flagellar protein FlbD YP_001388366.1 2654899 R 441771 CDS YP_001388367.1 153936013 5401494 complement(2655342..2656379) 1 NC_009698.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook protein flgE 2656379 flgE 5401494 flgE Clostridium botulinum A str. Hall flagellar hook protein flgE YP_001388367.1 2655342 R 441771 CDS YP_001388368.1 153936825 5400436 complement(2656461..2656880) 1 NC_009698.1 identified by match to protein family HMM TIGR02530; flagellar operon protein 2656880 5400436 CLC_2530 Clostridium botulinum A str. Hall flagellar operon protein YP_001388368.1 2656461 R 441771 CDS YP_001388369.1 153937540 5401830 complement(2656895..2657692) 1 NC_009698.1 identified by match to protein family HMM PF03963; flagellar hook capping protein 2657692 flgD 5401830 flgD Clostridium botulinum A str. Hall flagellar hook capping protein YP_001388369.1 2656895 R 441771 CDS YP_001388370.1 153934890 5399994 complement(2657722..2659110) 1 NC_009698.1 identified by match to protein family HMM PF02120; flagellar hook-length control protein 2659110 fliK 5399994 fliK Clostridium botulinum A str. Hall flagellar hook-length control protein YP_001388370.1 2657722 R 441771 CDS YP_001388371.1 153935363 5401817 complement(2659116..2659553) 1 NC_009698.1 identified by match to protein family HMM TIGR02473; flagellar protein FliJ 2659553 5401817 CLC_2533 Clostridium botulinum A str. Hall flagellar protein FliJ YP_001388371.1 2659116 R 441771 CDS YP_001388372.1 153936379 5399745 complement(2659657..2660973) 1 NC_009698.1 identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; flagellar protein export ATPase FliI 2660973 fliI 5399745 fliI Clostridium botulinum A str. Hall flagellar protein export ATPase FliI YP_001388372.1 2659657 R 441771 CDS YP_001388373.1 153935125 5400273 complement(2661013..2661789) 1 NC_009698.1 flagellar assembly protein FliH 2661789 fliH 5400273 fliH Clostridium botulinum A str. Hall flagellar assembly protein FliH YP_001388373.1 2661013 R 441771 CDS YP_001388374.1 153936133 5398390 complement(2661773..2662786) 1 NC_009698.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2662786 fliG 5398390 fliG Clostridium botulinum A str. Hall flagellar motor switch protein G YP_001388374.1 2661773 R 441771 CDS YP_001388375.1 153935162 5398267 complement(2662793..2664373) 1 NC_009698.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 2664373 fliF 5398267 fliF Clostridium botulinum A str. Hall flagellar MS-ring protein YP_001388375.1 2662793 R 441771 CDS YP_001388376.1 153936171 5401334 complement(2664389..2664703) 1 NC_009698.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 2664703 fliE 5401334 fliE Clostridium botulinum A str. Hall flagellar hook-basal body protein FliE YP_001388376.1 2664389 R 441771 CDS YP_001388377.1 153937867 5399608 complement(2664715..2665149) 1 NC_009698.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 2665149 flgC 5399608 flgC Clostridium botulinum A str. Hall flagellar basal body rod protein FlgC YP_001388377.1 2664715 R 441771 CDS YP_001388378.1 153937135 5400190 complement(2665247..2665648) 1 NC_009698.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal-body rod protein FlgB 2665648 flgB 5400190 flgB Clostridium botulinum A str. Hall flagellar basal-body rod protein FlgB YP_001388378.1 2665247 R 441771 CDS YP_001388379.2 258676990 5398835 complement(2666220..2667074) 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2667074 5398835 CLC_2541 Clostridium botulinum A str. Hall flagellin YP_001388379.2 2666220 R 441771 CDS YP_001388380.1 153935031 5398528 complement(2667218..2667586) 1 NC_009698.1 hypothetical protein 2667586 5398528 CLC_2542 Clostridium botulinum A str. Hall hypothetical protein YP_001388380.1 2667218 R 441771 CDS YP_001388381.1 153937279 5400970 complement(2668126..2669448) 1 NC_009698.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2669448 argH 5400970 argH Clostridium botulinum A str. Hall argininosuccinate lyase YP_001388381.1 2668126 R 441771 CDS YP_001388382.1 153936553 5398862 complement(2669470..2670663) 1 NC_009698.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2670663 argG 5398862 argG Clostridium botulinum A str. Hall argininosuccinate synthase YP_001388382.1 2669470 R 441771 CDS YP_001388383.1 153935372 5401498 complement(2670958..2671296) 1 NC_009698.1 hypothetical protein 2671296 5401498 CLC_2545 Clostridium botulinum A str. Hall hypothetical protein YP_001388383.1 2670958 R 441771 CDS YP_001388384.1 153934645 5400326 complement(2671319..2671663) 1 NC_009698.1 hypothetical protein 2671663 5400326 CLC_2546 Clostridium botulinum A str. Hall hypothetical protein YP_001388384.1 2671319 R 441771 CDS YP_001388385.1 153936907 5399698 complement(2671843..2673273) 1 NC_009698.1 identified by match to protein family HMM PF00614; cardiolipin synthetase 2673273 cls 5399698 cls Clostridium botulinum A str. Hall cardiolipin synthetase YP_001388385.1 2671843 R 441771 CDS YP_001388386.1 153935781 5399094 2673599..2674489 1 NC_009698.1 hypothetical protein 2674489 5399094 CLC_2548 Clostridium botulinum A str. Hall hypothetical protein YP_001388386.1 2673599 D 441771 CDS YP_001388387.1 153936328 5399080 complement(2674664..2674849) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2674849 5399080 CLC_2549 Clostridium botulinum A str. Hall hypothetical protein YP_001388387.1 2674664 R 441771 CDS YP_001388388.1 153937332 5400288 complement(2675132..2675581) 1 NC_009698.1 identified by match to protein family HMM PF04892; VanZ family protein 2675581 5400288 CLC_2550 Clostridium botulinum A str. Hall VanZ family protein YP_001388388.1 2675132 R 441771 CDS YP_001388389.1 153934491 5400706 complement(2675832..2677262) 1 NC_009698.1 identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 2677262 5400706 CLC_2551 Clostridium botulinum A str. Hall polysaccharide biosynthesis protein YP_001388389.1 2675832 R 441771 CDS YP_001388390.1 153935643 5400646 complement(2677302..2678219) 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 2678219 5400646 CLC_2552 Clostridium botulinum A str. Hall NAD-dependent epimerase/dehydratase YP_001388390.1 2677302 R 441771 CDS YP_001388391.1 153937042 5398692 complement(2678248..2679315) 1 NC_009698.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; neuB family protein 2679315 5398692 CLC_2553 Clostridium botulinum A str. Hall neuB family protein YP_001388391.1 2678248 R 441771 CDS YP_001388392.1 153937759 5400246 complement(2679347..2681008) 1 NC_009698.1 identified by match to protein family HMM PF02348; match to protein family HMM PF04101; cytidyltransferase-like protein 2681008 5400246 CLC_2554 Clostridium botulinum A str. Hall cytidyltransferase-like protein YP_001388392.1 2679347 R 441771 CDS YP_001388393.1 153935008 5399894 complement(2681023..2682192) 1 NC_009698.1 hypothetical protein 2682192 5399894 CLC_2555 Clostridium botulinum A str. Hall hypothetical protein YP_001388393.1 2681023 R 441771 CDS YP_001388394.1 153935758 5401598 complement(2682226..2683179) 1 NC_009698.1 identified by match to protein family HMM PF05855; exopolysaccharide biosynthesis protein 2683179 5401598 CLC_2556 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001388394.1 2682226 R 441771 CDS YP_001388395.1 153937383 5398669 complement(2683206..2683976) 1 NC_009698.1 exopolysaccharide biosynthesis protein 2683976 5398669 CLC_2557 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001388395.1 2683206 R 441771 CDS YP_001388396.1 153934664 5400146 complement(2683976..2685076) 1 NC_009698.1 identified by match to protein family HMM PF03275; match to protein family HMM TIGR00031; UDP-galactopyranose mutase 2685076 glf 5400146 glf Clostridium botulinum A str. Hall UDP-galactopyranose mutase YP_001388396.1 2683976 R 441771 CDS YP_001388397.1 153937690 5401770 complement(2685181..2685858) 1 NC_009698.1 identified by match to protein family HMM PF02397; undecaprenyl-phosphate galactosephosphotransferase 2685858 5401770 CLC_2559 Clostridium botulinum A str. Hall undecaprenyl-phosphate galactosephosphotransferase YP_001388397.1 2685181 R 441771 CDS YP_001388398.1 153937000 5400234 complement(2686069..2686779) 1 NC_009698.1 identified by match to protein family HMM TIGR01007; capsular exopolysaccharide family protein 2686779 5400234 CLC_2560 Clostridium botulinum A str. Hall capsular exopolysaccharide family protein YP_001388398.1 2686069 R 441771 CDS YP_001388399.1 153935808 5400279 complement(2686798..2687571) 1 NC_009698.1 identified by match to protein family HMM PF02811; exopolysaccharide biosynthesis protein 2687571 5400279 CLC_2561 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001388399.1 2686798 R 441771 CDS YP_001388400.1 153935055 5398485 complement(2687587..2688264) 1 NC_009698.1 identified by match to protein family HMM PF02706; capsular polysaccharide biosynthsis protein 2688264 5398485 CLC_2562 Clostridium botulinum A str. Hall capsular polysaccharide biosynthsis protein YP_001388400.1 2687587 R 441771 CDS YP_001388401.1 153934721 5399971 complement(2688299..2689261) 1 NC_009698.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 2689261 5399971 CLC_2563 Clostridium botulinum A str. Hall cell envelope-related function transcriptional attenuator YP_001388401.1 2688299 R 441771 CDS YP_001388402.1 153937125 5399867 complement(2689699..2689854) 1 NC_009698.1 hypothetical protein 2689854 5399867 CLC_2564 Clostridium botulinum A str. Hall hypothetical protein YP_001388402.1 2689699 R 441771 CDS YP_001388403.1 153936388 5400666 complement(2690004..2690177) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2690177 5400666 CLC_2565 Clostridium botulinum A str. Hall hypothetical protein YP_001388403.1 2690004 R 441771 CDS YP_001388404.1 153936057 5399902 complement(2690298..2690465) 1 NC_009698.1 hypothetical protein 2690465 5399902 CLC_2566 Clostridium botulinum A str. Hall hypothetical protein YP_001388404.1 2690298 R 441771 CDS YP_001388405.1 153936754 5400783 complement(2690949..2691797) 1 NC_009698.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 2691797 5400783 CLC_2567 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388405.1 2690949 R 441771 CDS YP_001388406.1 153935917 5400943 complement(2691874..2692692) 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2692692 fliC 5400943 fliC Clostridium botulinum A str. Hall flagellin YP_001388406.1 2691874 R 441771 CDS YP_001388407.1 153935539 5399104 complement(2692877..2693374) 1 NC_009698.1 hypothetical protein 2693374 5399104 CLC_2569 Clostridium botulinum A str. Hall hypothetical protein YP_001388407.1 2692877 R 441771 CDS YP_001388408.1 153936601 5398437 complement(2693460..2694929) 1 NC_009698.1 hypothetical protein 2694929 5398437 CLC_2570 Clostridium botulinum A str. Hall hypothetical protein YP_001388408.1 2693460 R 441771 CDS YP_001388409.1 153936408 5400355 complement(2694945..2695055) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2695055 5400355 CLC_2571 Clostridium botulinum A str. Hall hypothetical protein YP_001388409.1 2694945 R 441771 CDS YP_001388410.1 153937134 5401274 complement(2695163..2696164) 1 NC_009698.1 glycosyl transferase-like protein 2696164 5401274 CLC_2572 Clostridium botulinum A str. Hall glycosyl transferase-like protein YP_001388410.1 2695163 R 441771 CDS YP_001388411.1 153934665 5398527 complement(2696661..2697665) 1 NC_009698.1 identified by match to protein family HMM PF00657; GDSL family lipase/acylhydrolase 2697665 5398527 CLC_2573 Clostridium botulinum A str. Hall GDSL family lipase/acylhydrolase YP_001388411.1 2696661 R 441771 CDS YP_001388412.1 153935867 5398768 complement(2697755..2698852) 1 NC_009698.1 hypothetical protein 2698852 5398768 CLC_2574 Clostridium botulinum A str. Hall hypothetical protein YP_001388412.1 2697755 R 441771 CDS YP_001388413.1 153936876 5401446 complement(2698869..2700047) 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; glycosyl transferase family protein 2700047 5401446 CLC_2575 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001388413.1 2698869 R 441771 CDS YP_001388414.1 153935492 5399593 complement(2700075..2701253) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 2701253 5399593 CLC_2576 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388414.1 2700075 R 441771 CDS YP_001388415.1 153936469 5399062 complement(2701358..2701885) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2701885 5399062 CLC_2577 Clostridium botulinum A str. Hall hypothetical protein YP_001388415.1 2701358 R 441771 CDS YP_001388416.1 153937288 5398930 complement(2701893..2703113) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 2703113 5398930 CLC_2578 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388416.1 2701893 R 441771 CDS YP_001388417.1 153934596 5399756 complement(2703139..2705136) 1 NC_009698.1 asparagine synthetase 2705136 5399756 CLC_2579 Clostridium botulinum A str. Hall asparagine synthetase YP_001388417.1 2703139 R 441771 CDS YP_001388418.1 153936892 5399604 complement(2705173..2706594) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2706594 5399604 CLC_2580 Clostridium botulinum A str. Hall hypothetical protein YP_001388418.1 2705173 R 441771 CDS YP_001388419.1 153937848 5400126 complement(2706640..2708079) 1 NC_009698.1 hypothetical protein 2708079 5400126 CLC_2581 Clostridium botulinum A str. Hall hypothetical protein YP_001388419.1 2706640 R 441771 CDS YP_001388422.1 153936454 5398686 complement(2709227..2710432) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 2710432 5398686 CLC_2584 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388422.1 2709227 R 441771 CDS YP_001388423.1 153935466 5399827 complement(2710519..2711826) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2711826 5399827 CLC_2585 Clostridium botulinum A str. Hall hypothetical protein YP_001388423.1 2710519 R 441771 CDS YP_001388424.1 153934973 5399411 complement(2711848..2712624) 1 NC_009698.1 identified by match to protein family HMM PF04989; cephalosporin hydroxylase 2712624 5399411 CLC_2586 Clostridium botulinum A str. Hall cephalosporin hydroxylase YP_001388424.1 2711848 R 441771 CDS YP_001388425.1 153937524 5400015 complement(2712621..2713796) 1 NC_009698.1 identified by match to protein family HMM PF08241; hypothetical protein 2713796 5400015 CLC_2587 Clostridium botulinum A str. Hall hypothetical protein YP_001388425.1 2712621 R 441771 CDS YP_001388426.1 153937485 5398241 complement(2713786..2714706) 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase 2714706 5398241 CLC_2588 Clostridium botulinum A str. Hall NAD-dependent epimerase/dehydratase YP_001388426.1 2713786 R 441771 CDS YP_001388427.1 153936831 5401109 complement(2714703..2715236) 1 NC_009698.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 2715236 rfbC 5401109 rfbC Clostridium botulinum A str. Hall dTDP-4-dehydrorhamnose 3,5-epimerase YP_001388427.1 2714703 R 441771 CDS YP_001388428.1 153935831 5399132 complement(2715237..2716472) 1 NC_009698.1 identified by match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484; methyltransferase-like protein 2716472 5399132 CLC_2590 Clostridium botulinum A str. Hall methyltransferase-like protein YP_001388428.1 2715237 R 441771 CDS YP_001388429.1 153935102 5398538 complement(2716519..2717622) 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2717622 5398538 CLC_2591 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001388429.1 2716519 R 441771 CDS YP_001388430.1 153934604 5399136 complement(2717624..2718400) 1 NC_009698.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623; glucose-1-phosphate cytidylyltransferase 2718400 5399136 CLC_2592 Clostridium botulinum A str. Hall glucose-1-phosphate cytidylyltransferase YP_001388430.1 2717624 R 441771 CDS YP_001388431.1 153935115 5401244 complement(2718419..2720830) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2720830 5401244 CLC_2593 Clostridium botulinum A str. Hall hypothetical protein YP_001388431.1 2718419 R 441771 CDS YP_001388432.1 153936167 5400693 complement(2720921..2721973) 1 NC_009698.1 identified by match to protein family HMM PF03102; match to protein family HMM PF08666; NeuB family protein 2721973 5400693 CLC_2594 Clostridium botulinum A str. Hall NeuB family protein YP_001388432.1 2720921 R 441771 CDS YP_001388433.1 153936694 5401250 complement(2722115..2722870) 1 NC_009698.1 identified by match to protein family HMM PF02348; polysaccharide biosynthesis protein 2722870 5401250 CLC_2595 Clostridium botulinum A str. Hall polysaccharide biosynthesis protein YP_001388433.1 2722115 R 441771 CDS YP_001388434.1 153937552 5400587 complement(2722993..2723664) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase 2723664 5400587 CLC_2596 Clostridium botulinum A str. Hall HAD family hydrolase YP_001388434.1 2722993 R 441771 CDS YP_001388435.1 153935240 5400590 complement(2723704..2724732) 1 NC_009698.1 undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein 2724732 5400590 CLC_2597 Clostridium botulinum A str. Hall carbamoyl phosphate synthase-like protein YP_001388435.1 2723704 R 441771 CDS YP_001388436.1 153936011 5399848 complement(2724953..2726017) 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase 2726017 5399848 CLC_2598 Clostridium botulinum A str. Hall NAD-dependent epimerase/dehydratase YP_001388436.1 2724953 R 441771 CDS YP_001388437.1 153937214 5401828 complement(2726137..2727162) 1 NC_009698.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; exopolysaccharide biosynthesis protein 2727162 5401828 CLC_2599 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001388437.1 2726137 R 441771 CDS YP_001388438.1 153937817 5399900 complement(2727203..2728624) 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; glycosyl transferase family protein 2728624 5399900 CLC_2600 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001388438.1 2727203 R 441771 CDS YP_001388439.1 153936817 5400296 complement(2728633..2728980) 1 NC_009698.1 identified by similarity to PIR:C97171; hypothetical protein 2728980 5400296 CLC_2601 Clostridium botulinum A str. Hall hypothetical protein YP_001388439.1 2728633 R 441771 CDS YP_001388440.1 153935810 5401218 complement(2728984..2730687) 1 NC_009698.1 identified by match to protein family HMM PF01973; hypothetical protein 2730687 5401218 CLC_2602 Clostridium botulinum A str. Hall hypothetical protein YP_001388440.1 2728984 R 441771 CDS YP_001388441.1 153937477 5399973 complement(2730712..2732613) 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; glycosyl transferase family protein 2732613 5399973 CLC_2603 Clostridium botulinum A str. Hall glycosyl transferase family protein YP_001388441.1 2730712 R 441771 CDS YP_001388442.1 153937462 5398423 complement(2732836..2733663) 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2733663 5398423 CLC_2604 Clostridium botulinum A str. Hall flagellin YP_001388442.1 2732836 R 441771 CDS YP_001388443.1 153936556 5400905 complement(2733877..2734704) 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 2734704 5400905 CLC_2605 Clostridium botulinum A str. Hall flagellin YP_001388443.1 2733877 R 441771 CDS YP_001388444.1 153936134 5400362 complement(2734854..2735195) 1 NC_009698.1 hypothetical protein 2735195 5400362 CLC_2606 Clostridium botulinum A str. Hall hypothetical protein YP_001388444.1 2734854 R 441771 CDS YP_001388445.1 153934600 5401335 complement(2735222..2737657) 1 NC_009698.1 identified by match to protein family HMM PF02465; match to protein family HMM PF07195; flagellar hook-associated protein 2 2737657 fliD 5401335 fliD Clostridium botulinum A str. Hall flagellar hook-associated protein 2 YP_001388445.1 2735222 R 441771 CDS YP_001388446.1 153937453 5401240 complement(2737711..2738100) 1 NC_009698.1 identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 2738100 fliS 5401240 fliS Clostridium botulinum A str. Hall flagellar protein FliS YP_001388446.1 2737711 R 441771 CDS YP_001388447.1 153936564 5399652 complement(2738137..2738436) 1 NC_009698.1 hypothetical protein 2738436 5399652 CLC_2609 Clostridium botulinum A str. Hall hypothetical protein YP_001388447.1 2738137 R 441771 CDS YP_001388448.1 153934493 5399272 complement(2738491..2738847) 1 NC_009698.1 identified by match to protein family HMM PF03646; flagellar protein FlaG 2738847 5399272 CLC_2610 Clostridium botulinum A str. Hall flagellar protein FlaG YP_001388448.1 2738491 R 441771 CDS YP_001388449.1 153937376 5398694 complement(2738863..2739081) 1 NC_009698.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2739081 csrA 5398694 csrA Clostridium botulinum A str. Hall carbon storage regulator YP_001388449.1 2738863 R 441771 CDS YP_001388450.1 153937198 5401051 complement(2739081..2739512) 1 NC_009698.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 2739512 5401051 CLC_2612 Clostridium botulinum A str. Hall flagellar assembly protein FliW YP_001388450.1 2739081 R 441771 CDS YP_001388451.1 153936218 5398706 complement(2739601..2740563) 1 NC_009698.1 identified by match to protein family HMM PF00669; match to protein family HMM TIGR02550; flagellar hook-associated protein 3 2740563 flgL 5398706 flgL Clostridium botulinum A str. Hall flagellar hook-associated protein 3 YP_001388451.1 2739601 R 441771 CDS YP_001388452.1 153935679 5399451 complement(2740581..2742449) 1 NC_009698.1 identified by match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492; flagellar hook-associated protein FlgK 2742449 flgK 5399451 flgK Clostridium botulinum A str. Hall flagellar hook-associated protein FlgK YP_001388452.1 2740581 R 441771 CDS YP_001388453.1 153934671 5399221 complement(2742738..2743142) 1 NC_009698.1 identified by match to protein family HMM PF05130; flgN family protein 2743142 5399221 CLC_2615 Clostridium botulinum A str. Hall flgN family protein YP_001388453.1 2742738 R 441771 CDS YP_001388454.1 153936928 5398599 complement(2743142..2743423) 1 NC_009698.1 identified by match to protein family HMM PF04316; regulator of flagellin synthesis FlgM 2743423 5398599 CLC_2616 Clostridium botulinum A str. Hall regulator of flagellin synthesis FlgM YP_001388454.1 2743142 R 441771 CDS YP_001388455.1 153937794 5401142 complement(2743920..2745080) 1 NC_009698.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 2745080 fliN 5401142 fliN Clostridium botulinum A str. Hall flagellar motor switch protein YP_001388455.1 2743920 R 441771 CDS YP_001388456.1 153934570 5401289 complement(2745073..2746068) 1 NC_009698.1 identified by match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 2746068 fliM 5401289 fliM Clostridium botulinum A str. Hall flagellar motor switch protein FliM YP_001388456.1 2745073 R 441771 CDS YP_001388457.1 153935521 5401506 complement(2746096..2746491) 1 NC_009698.1 identified by match to protein family HMM PF01584; chemotaxis protein CheW 2746491 5401506 CLC_2619 Clostridium botulinum A str. Hall chemotaxis protein CheW YP_001388457.1 2746096 R 441771 CDS YP_001388458.1 153934638 5401464 complement(2746591..2746950) 1 NC_009698.1 identified by match to protein family HMM PF00072; chemotaxis protein CheY 2746950 cheY 5401464 cheY Clostridium botulinum A str. Hall chemotaxis protein CheY YP_001388458.1 2746591 R 441771 CDS YP_001388459.1 153935380 5399336 complement(2746978..2747577) 1 NC_009698.1 identified by match to protein family HMM PF04509; chemotaxis protein CheC 2747577 cheC 5399336 cheC Clostridium botulinum A str. Hall chemotaxis protein CheC YP_001388459.1 2746978 R 441771 CDS YP_001388460.1 153936551 5400609 complement(2747603..2749678) 1 NC_009698.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA 2749678 cheA 5400609 cheA Clostridium botulinum A str. Hall chemotaxis protein CheA YP_001388460.1 2747603 R 441771 CDS YP_001388461.1 153937459 5400324 complement(2749691..2750461) 1 NC_009698.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein CheR 2750461 cheR 5400324 cheR Clostridium botulinum A str. Hall chemotaxis protein CheR YP_001388461.1 2749691 R 441771 CDS YP_001388462.1 153934581 5398443 complement(2750476..2751540) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 2751540 cheB 5398443 cheB Clostridium botulinum A str. Hall protein-glutamate methylesterase CheB YP_001388462.1 2750476 R 441771 CDS YP_001388463.1 153935334 5398604 complement(2751563..2752051) 1 NC_009698.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 2752051 cheD 5398604 cheD Clostridium botulinum A str. Hall chemoreceptor glutamine deamidase CheD YP_001388463.1 2751563 R 441771 CDS YP_001388464.1 153936531 5399320 complement(2752068..2752514) 1 NC_009698.1 identified by match to protein family HMM PF01584; chemotaxis protein CheW 2752514 cheW 5399320 cheW Clostridium botulinum A str. Hall chemotaxis protein CheW YP_001388464.1 2752068 R 441771 CDS YP_001388465.1 153937355 5400670 complement(2752530..2754563) 1 NC_009698.1 identified by match to protein family HMM PF03961; hypothetical protein 2754563 5400670 CLC_2627 Clostridium botulinum A str. Hall hypothetical protein YP_001388465.1 2752530 R 441771 CDS YP_001388466.1 153935022 5400167 complement(2754816..2756771) 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00830; PTS system glucose family transporter subunit IIABC 2756771 5400167 CLC_2628 Clostridium botulinum A str. Hall PTS system glucose family transporter subunit IIABC YP_001388466.1 2754816 R 441771 CDS YP_001388467.1 153935796 5399167 complement(2756854..2757681) 1 NC_009698.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator 2757681 5399167 CLC_2629 Clostridium botulinum A str. Hall BglG family transcriptional antiterminator YP_001388467.1 2756854 R 441771 CDS YP_001388468.1 153935680 5398786 complement(2757930..2758763) 1 NC_009698.1 identified by match to protein family HMM PF01063; branched-chain amino acid aminotransferase 2758763 5398786 CLC_2630 Clostridium botulinum A str. Hall branched-chain amino acid aminotransferase YP_001388468.1 2757930 R 441771 CDS YP_001388469.1 153934740 5399222 complement(2758890..2759531) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase 2759531 5399222 CLC_2631 Clostridium botulinum A str. Hall HAD family hydrolase YP_001388469.1 2758890 R 441771 CDS YP_001388470.1 153937090 5399535 complement(2759788..2760189) 1 NC_009698.1 hypothetical protein 2760189 5399535 CLC_2632 Clostridium botulinum A str. Hall hypothetical protein YP_001388470.1 2759788 R 441771 CDS YP_001388471.1 153936888 5399317 complement(2760450..2760566) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2760566 5399317 CLC_2633 Clostridium botulinum A str. Hall hypothetical protein YP_001388471.1 2760450 R 441771 CDS YP_001388472.1 153936104 5398986 complement(2760832..2764410) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176; pyruvate ferredoxin oxidoreductase 2764410 5398986 CLC_2634 Clostridium botulinum A str. Hall pyruvate ferredoxin oxidoreductase YP_001388472.1 2760832 R 441771 CDS YP_001388473.1 153934907 5400383 complement(2765040..2766104) 1 NC_009698.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2766104 murG 5400383 murG Clostridium botulinum A str. Hall undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001388473.1 2765040 R 441771 CDS YP_001388474.1 153937622 5398472 2766443..2766592 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2766592 5398472 CLC_2636 Clostridium botulinum A str. Hall hypothetical protein YP_001388474.1 2766443 D 441771 CDS YP_001388475.1 153937261 5400000 complement(2766706..2768814) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensory box histidine kinase 2768814 5400000 CLC_2637 Clostridium botulinum A str. Hall sensory box histidine kinase YP_001388475.1 2766706 R 441771 CDS YP_001388476.1 153936524 5398661 complement(2768937..2770718) 1 NC_009698.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ 2770718 recJ 5398661 recJ Clostridium botulinum A str. Hall single-stranded-DNA-specific exonuclease RecJ YP_001388476.1 2768937 R 441771 CDS YP_001388477.1 153935413 5401590 2770909..2771727 1 NC_009698.1 identified by match to protein family HMM PF01261; AP endonuclease 2771727 5401590 CLC_2639 Clostridium botulinum A str. Hall AP endonuclease YP_001388477.1 2770909 D 441771 CDS YP_001388478.1 153935024 5400293 complement(2772017..2773420) 1 NC_009698.1 identified by match to protein family HMM PF01436; NHL repeat-containing protein 2773420 5400293 CLC_2640 Clostridium botulinum A str. Hall NHL repeat-containing protein YP_001388478.1 2772017 R 441771 CDS YP_001388479.1 153935950 5401034 complement(2774415..2775623) 1 NC_009698.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 2775623 5401034 CLC_2641 Clostridium botulinum A str. Hall M16 family peptidase YP_001388479.1 2774415 R 441771 CDS YP_001388480.1 153936758 5401312 2776012..2776422 1 NC_009698.1 hypothetical protein 2776422 5401312 CLC_2642 Clostridium botulinum A str. Hall hypothetical protein YP_001388480.1 2776012 D 441771 CDS YP_001388481.1 153935560 5400947 2776490..2777041 1 NC_009698.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01383; DJ-1 family protein 2777041 5400947 CLC_2643 Clostridium botulinum A str. Hall DJ-1 family protein YP_001388481.1 2776490 D 441771 CDS YP_001388482.1 153934822 5398522 complement(2777444..2778007) 1 NC_009698.1 identified by match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 2778007 glpP 5398522 glpP Clostridium botulinum A str. Hall glycerol uptake operon antiterminator regulatory protein YP_001388482.1 2777444 R 441771 CDS YP_001388483.1 153937418 5398888 complement(2778056..2780926) 1 NC_009698.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2780926 5398888 CLC_2645 Clostridium botulinum A str. Hall DNA topoisomerase IV subunit A YP_001388483.1 2778056 R 441771 CDS YP_001388484.1 153937688 5400977 complement(2781000..2782955) 1 NC_009698.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2782955 5400977 CLC_2646 Clostridium botulinum A str. Hall DNA topoisomerase IV subunit B YP_001388484.1 2781000 R 441771 CDS YP_001388485.1 153936960 5400277 complement(2783322..2783699) 1 NC_009698.1 hypothetical protein 2783699 5400277 CLC_2647 Clostridium botulinum A str. Hall hypothetical protein YP_001388485.1 2783322 R 441771 CDS YP_001388486.1 153935770 5398253 2783886..2785058 1 NC_009698.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 2785058 5398253 CLC_2648 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001388486.1 2783886 D 441771 CDS YP_001388487.1 153936386 5398609 2785071..2785421 1 NC_009698.1 hypothetical protein 2785421 5398609 CLC_2649 Clostridium botulinum A str. Hall hypothetical protein YP_001388487.1 2785071 D 441771 CDS YP_001388488.1 153937444 5401380 2785882..2786118 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2786118 5401380 CLC_2650 Clostridium botulinum A str. Hall hypothetical protein YP_001388488.1 2785882 D 441771 CDS YP_001388489.1 153936487 5399442 2786138..2787031 1 NC_009698.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2787031 5399442 CLC_2651 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001388489.1 2786138 D 441771 CDS YP_001388490.1 153937452 5399627 complement(2787110..2788399) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2788399 5399627 CLC_2652 Clostridium botulinum A str. Hall hypothetical protein YP_001388490.1 2787110 R 441771 CDS YP_001388491.1 153935807 5399651 complement(2788437..2789417) 1 NC_009698.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 2789417 galE 5399651 galE Clostridium botulinum A str. Hall UDP-glucose 4-epimerase YP_001388491.1 2788437 R 441771 CDS YP_001388492.1 153937002 5401766 complement(2789764..2790180) 1 NC_009698.1 identified by match to protein family HMM PF00258; match to protein family HMM TIGR01753; flavodoxin 2790180 5401766 CLC_2654 Clostridium botulinum A str. Hall flavodoxin YP_001388492.1 2789764 R 441771 CDS YP_001388493.1 153937633 5399280 complement(2790464..2790589) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2790589 5399280 CLC_2655 Clostridium botulinum A str. Hall hypothetical protein YP_001388493.1 2790464 R 441771 CDS YP_001388494.1 153934749 5399015 complement(2790568..2791275) 1 NC_009698.1 identified by similarity to GB:CAC13569.1; hypothetical protein 2791275 5399015 CLC_2656 Clostridium botulinum A str. Hall hypothetical protein YP_001388494.1 2790568 R 441771 CDS YP_001388495.1 153935365 5399000 complement(2791547..2792968) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2792968 5399000 CLC_2657 Clostridium botulinum A str. Hall MATE efflux family protein YP_001388495.1 2791547 R 441771 CDS YP_001388496.1 153936533 5400275 complement(2793592..2795658) 1 NC_009698.1 identified by match to protein family HMM PF00165; match to protein family HMM PF07883; AraC family transcriptional regulator 2795658 5400275 CLC_2658 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001388496.1 2793592 R 441771 CDS YP_001388497.1 153935707 5400672 2796057..2797094 1 NC_009698.1 identified by match to protein family HMM PF02016; LD-carboxypeptidase 2797094 5400672 CLC_2659 Clostridium botulinum A str. Hall LD-carboxypeptidase YP_001388497.1 2796057 D 441771 CDS YP_001388498.1 153935462 5401024 complement(2797609..2799105) 1 NC_009698.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 2799105 glpK 5401024 glpK Clostridium botulinum A str. Hall glycerol kinase YP_001388498.1 2797609 R 441771 CDS YP_001388499.1 153935955 5401062 complement(2799369..2800073) 1 NC_009698.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 2800073 5401062 CLC_2661 Clostridium botulinum A str. Hall glycerol uptake facilitator protein YP_001388499.1 2799369 R 441771 CDS YP_001388500.1 153937396 5399516 2800607..2800927 1 NC_009698.1 identified by match to protein family HMM PF01906; hypothetical protein 2800927 5399516 CLC_2662 Clostridium botulinum A str. Hall hypothetical protein YP_001388500.1 2800607 D 441771 CDS YP_001388501.1 153934486 5399988 complement(2801038..2801736) 1 NC_009698.1 identified by match to protein family HMM PF04892; VanZ family membrane protein 2801736 5399988 CLC_2663 Clostridium botulinum A str. Hall VanZ family membrane protein YP_001388501.1 2801038 R 441771 CDS YP_001388502.1 153935949 5401382 complement(2801868..2802944) 1 NC_009698.1 ABC transporter permease 2802944 5401382 CLC_2664 Clostridium botulinum A str. Hall ABC transporter permease YP_001388502.1 2801868 R 441771 CDS YP_001388503.1 153936502 5399072 complement(2802928..2803824) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2803824 5399072 CLC_2665 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388503.1 2802928 R 441771 CDS YP_001388504.1 153935607 5401311 complement(2803830..2804210) 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2804210 5401311 CLC_2666 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001388504.1 2803830 R 441771 CDS YP_001388505.1 153936803 5398502 complement(2804384..2804899) 1 NC_009698.1 identified by match to protein family HMM PF04892; VanZ family membrane protein 2804899 5398502 CLC_2667 Clostridium botulinum A str. Hall VanZ family membrane protein YP_001388505.1 2804384 R 441771 CDS YP_001388506.1 153937618 5400549 2805332..2807044 1 NC_009698.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2807044 5400549 CLC_2668 Clostridium botulinum A str. Hall hydroxylamine reductase YP_001388506.1 2805332 D 441771 CDS YP_001388507.1 153934765 5398822 2807792..2808382 1 NC_009698.1 membrane-spanning protein 2808382 5398822 CLC_2669 Clostridium botulinum A str. Hall membrane-spanning protein YP_001388507.1 2807792 D 441771 CDS YP_001388508.1 153937488 5399996 2808686..2809918 1 NC_009698.1 identified by match to protein family HMM PF02073; aminopeptidase 2809918 5399996 CLC_2670 Clostridium botulinum A str. Hall aminopeptidase YP_001388508.1 2808686 D 441771 CDS YP_001388509.1 153935251 5398553 complement(2810106..2811251) 1 NC_009698.1 identified by match to protein family HMM PF05504; spore germination protein 2811251 gerAC 5398553 gerAC Clostridium botulinum A str. Hall spore germination protein YP_001388509.1 2810106 R 441771 CDS YP_001388510.1 153935976 5401112 complement(2811205..2812338) 1 NC_009698.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 2812338 5401112 CLC_2672 Clostridium botulinum A str. Hall spore germination protein YP_001388510.1 2811205 R 441771 CDS YP_001388511.1 153936297 5401524 complement(2812328..2813815) 1 NC_009698.1 identified by match to protein family HMM PF03323; spore germination protein 2813815 gerAA 5401524 gerAA Clostridium botulinum A str. Hall spore germination protein YP_001388511.1 2812328 R 441771 CDS YP_001388512.1 153937150 5401511 complement(2814075..2814284) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2814284 5401511 CLC_2674 Clostridium botulinum A str. Hall hypothetical protein YP_001388512.1 2814075 R 441771 CDS YP_001388513.1 153934801 5399706 complement(2814509..2814628) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2814628 5399706 CLC_2675 Clostridium botulinum A str. Hall hypothetical protein YP_001388513.1 2814509 R 441771 CDS YP_001388514.1 153937143 5399879 complement(2814630..2815484) 1 NC_009698.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2815484 5399879 CLC_2676 Clostridium botulinum A str. Hall pyridoxal biosynthesis lyase PdxS YP_001388514.1 2814630 R 441771 CDS YP_001388515.1 153934475 5400571 complement(2815843..2816574) 1 NC_009698.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2816574 5400571 CLC_2677 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001388515.1 2815843 R 441771 CDS YP_001388516.1 153936759 5398621 complement(2816794..2818368) 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase 2818368 5398621 CLC_2678 Clostridium botulinum A str. Hall DEAD/DEAH box helicase YP_001388516.1 2816794 R 441771 CDS YP_001388517.1 153936416 5398647 complement(2818445..2818612) 1 NC_009698.1 hypothetical protein 2818612 5398647 CLC_2679 Clostridium botulinum A str. Hall hypothetical protein YP_001388517.1 2818445 R 441771 CDS YP_001388518.1 153935458 5400948 2819046..2819471 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2819471 5400948 CLC_2680 Clostridium botulinum A str. Hall hypothetical protein YP_001388518.1 2819046 D 441771 CDS YP_001388519.1 153934738 5399031 complement(2819560..2821254) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2821254 5399031 CLC_2681 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388519.1 2819560 R 441771 CDS YP_001388520.1 153937614 5399360 complement(2821451..2821861) 1 NC_009698.1 identified by match to protein family HMM PF00582; universal stress protein family protein 2821861 5399360 CLC_2682 Clostridium botulinum A str. Hall universal stress protein family protein YP_001388520.1 2821451 R 441771 CDS YP_001388521.1 153936625 5401777 2822494..2823135 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2823135 5401777 CLC_2683 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001388521.1 2822494 D 441771 CDS YP_001388522.1 153936007 5400865 complement(2823395..2824312) 1 NC_009698.1 catalyzes the formation of glutamate from glutamine; glutaminase 2824312 5400865 CLC_2684 Clostridium botulinum A str. Hall glutaminase YP_001388522.1 2823395 R 441771 CDS YP_001388523.1 153937205 5400826 complement(2824703..2825728) 1 NC_009698.1 identified by match to protein family HMM PF06725; hypothetical protein 2825728 5400826 CLC_2685 Clostridium botulinum A str. Hall hypothetical protein YP_001388523.1 2824703 R 441771 CDS YP_001388524.1 153936321 5398683 complement(2825995..2826279) 1 NC_009698.1 lipoprotein 2826279 5398683 CLC_2686 Clostridium botulinum A str. Hall lipoprotein YP_001388524.1 2825995 R 441771 CDS YP_001388525.1 153936908 5400403 complement(2826412..2828472) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 2828472 5400403 CLC_2687 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388525.1 2826412 R 441771 CDS YP_001388526.1 153936155 5400841 complement(2828989..2829789) 1 NC_009698.1 hypothetical protein 2829789 5400841 CLC_2688 Clostridium botulinum A str. Hall hypothetical protein YP_001388526.1 2828989 R 441771 CDS YP_001388527.1 153934989 5399081 complement(2830133..2831161) 1 NC_009698.1 identified by match to protein family HMM PF00268; ribonucleoside-diphosphate reductase subunit beta 2831161 nrdB 5399081 nrdB Clostridium botulinum A str. Hall ribonucleoside-diphosphate reductase subunit beta YP_001388527.1 2830133 R 441771 CDS YP_001388528.1 153936095 5398313 complement(2833877..2834353) 1 NC_009698.1 hypothetical protein 2834353 5398313 CLC_2691 Clostridium botulinum A str. Hall hypothetical protein YP_001388528.1 2833877 R 441771 CDS YP_001388529.1 153937018 5400363 2835006..2836127 1 NC_009698.1 hypothetical protein 2836127 5400363 CLC_2692 Clostridium botulinum A str. Hall hypothetical protein YP_001388529.1 2835006 D 441771 CDS YP_001388530.1 153937362 5398974 2836364..2837215 1 NC_009698.1 hypothetical protein 2837215 5398974 CLC_2693 Clostridium botulinum A str. Hall hypothetical protein YP_001388530.1 2836364 D 441771 CDS YP_001388531.1 153934711 5400116 complement(2837375..2838424) 1 NC_009698.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2838424 dinB 5400116 dinB Clostridium botulinum A str. Hall DNA polymerase IV YP_001388531.1 2837375 R 441771 CDS YP_001388532.1 153934691 5399179 complement(2838889..2840124) 1 NC_009698.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2840124 5399179 CLC_2695 Clostridium botulinum A str. Hall dihydropyrimidine dehydrogenase YP_001388532.1 2838889 R 441771 CDS YP_001388533.1 153935695 5398754 complement(2840124..2841440) 1 NC_009698.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 2841440 5398754 CLC_2696 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001388533.1 2840124 R 441771 CDS YP_001388534.1 153937643 5399784 complement(2841887..2842435) 1 NC_009698.1 identified by match to protein family HMM PF00156; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase 2842435 pyrR-2 5399784 pyrR-2 Clostridium botulinum A str. Hall pyrimidine operon regulatory protein/uracil phosphoribosyltransferase YP_001388534.1 2841887 R 441771 CDS YP_001388535.1 153935183 5401165 complement(2842764..2843819) 1 NC_009698.1 identified by match to protein family HMM PF02698; hypothetical protein 2843819 5401165 CLC_2698 Clostridium botulinum A str. Hall hypothetical protein YP_001388535.1 2842764 R 441771 CDS YP_001388536.1 153934726 5401638 complement(2844249..2844668) 1 NC_009698.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965; MarR family transcriptional regulator 2844668 5401638 CLC_2699 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001388536.1 2844249 R 441771 CDS YP_001388537.1 153935995 5398765 complement(2844686..2846944) 1 NC_009698.1 identified by match to protein family HMM PF00005; excinuclease ABC subunit A 2846944 5398765 CLC_2700 Clostridium botulinum A str. Hall excinuclease ABC subunit A YP_001388537.1 2844686 R 441771 CDS YP_001388538.1 153936220 5400853 2847488..2847796 1 NC_009698.1 hypothetical protein 2847796 5400853 CLC_2701 Clostridium botulinum A str. Hall hypothetical protein YP_001388538.1 2847488 D 441771 CDS YP_001388539.1 153936894 5399048 complement(2847907..2848434) 1 NC_009698.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 2848434 ligT 5399048 ligT Clostridium botulinum A str. Hall 2'-5' RNA ligase YP_001388539.1 2847907 R 441771 CDS YP_001388540.1 153937573 5399453 complement(2848619..2849017) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2849017 5399453 CLC_2703 Clostridium botulinum A str. Hall hypothetical protein YP_001388540.1 2848619 R 441771 CDS YP_001388541.1 153935237 5400128 complement(2849257..2850969) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2850969 5400128 CLC_2704 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388541.1 2849257 R 441771 CDS YP_001388542.1 153935985 5398895 complement(2851681..2852118) 1 NC_009698.1 identified by match to protein family HMM PF00293; MutT/nudix family protein 2852118 5398895 CLC_2706 Clostridium botulinum A str. Hall MutT/nudix family protein YP_001388542.1 2851681 R 441771 CDS YP_001388543.1 153937188 5399439 2852658..2853125 1 NC_009698.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 2853125 5399439 CLC_2707 Clostridium botulinum A str. Hall FUR family transcriptional regulator YP_001388543.1 2852658 D 441771 CDS YP_001388544.1 153936200 5400430 2853258..2855255 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2855255 5400430 CLC_2708 Clostridium botulinum A str. Hall hypothetical protein YP_001388544.1 2853258 D 441771 CDS YP_001388545.1 153934990 5398853 complement(2855342..2857561) 1 NC_009698.1 identified by match to protein family HMM PF00704; glycosyl hydrolase 2857561 5398853 CLC_2709 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001388545.1 2855342 R 441771 CDS YP_001388546.1 153934639 5401198 complement(2857789..2858523) 1 NC_009698.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 2858523 nagB 5401198 nagB Clostridium botulinum A str. Hall glucosamine-6-phosphate deaminase YP_001388546.1 2857789 R 441771 CDS YP_001388547.1 153934636 5400307 complement(2858591..2859727) 1 NC_009698.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221; N-acetylglucosamine-6-phosphate deacetylase 2859727 nagA 5400307 nagA Clostridium botulinum A str. Hall N-acetylglucosamine-6-phosphate deacetylase YP_001388547.1 2858591 R 441771 CDS YP_001388548.1 153935376 5399337 complement(2859888..2860622) 1 NC_009698.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator 2860622 5399337 CLC_2712 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001388548.1 2859888 R 441771 CDS YP_001388549.1 153937790 5399334 2860917..2861774 1 NC_009698.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123; BglG family transcriptional antiterminator 2861774 5399334 CLC_2713 Clostridium botulinum A str. Hall BglG family transcriptional antiterminator YP_001388549.1 2860917 D 441771 CDS YP_001388550.1 153935256 5399702 complement(2861992..2862471) 1 NC_009698.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830; PTS system glucose subfamily transporter subunit IIA 2862471 ptbA 5399702 ptbA Clostridium botulinum A str. Hall PTS system glucose subfamily transporter subunit IIA YP_001388550.1 2861992 R 441771 CDS YP_001388551.1 153934979 5401284 2863218..2864660 1 NC_009698.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998; PTS system N-acetylglucosamine-specific transporter subunit IIBC 2864660 nagE 5401284 nagE Clostridium botulinum A str. Hall PTS system N-acetylglucosamine-specific transporter subunit IIBC YP_001388551.1 2863218 D 441771 CDS YP_001388552.1 153936130 5400217 2865140..2866510 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2866510 5400217 CLC_2716 Clostridium botulinum A str. Hall MATE efflux family protein YP_001388552.1 2865140 D 441771 CDS YP_001388553.1 153936520 5400620 complement(2866675..2868069) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM TIGR00797; MATE efflux family protein 2868069 5400620 CLC_2717 Clostridium botulinum A str. Hall MATE efflux family protein YP_001388553.1 2866675 R 441771 CDS YP_001388554.1 153937669 5398353 complement(2868303..2869502) 1 NC_009698.1 identified by match to protein family HMM PF00258; match to protein family HMM PF00753; metallo-beta-lactamase/flavodoxin 2869502 5398353 CLC_2718 Clostridium botulinum A str. Hall metallo-beta-lactamase/flavodoxin YP_001388554.1 2868303 R 441771 CDS YP_001388555.1 153937098 5401586 complement(2869561..2871468) 1 NC_009698.1 identified by match to protein family HMM PF00301; match to protein family HMM PF00441; match to protein family HMM PF00766; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 2871468 5401586 CLC_2719 Clostridium botulinum A str. Hall acyl-CoA dehydrogenase YP_001388555.1 2869561 R 441771 CDS YP_001388556.1 153936135 5401670 complement(2871824..2872441) 1 NC_009698.1 identified by match to protein family HMM PF00665; transposase 2872441 5401670 CLC_2720 Clostridium botulinum A str. Hall transposase YP_001388556.1 2871824 R 441771 CDS YP_001388557.3 532643385 5400890 2872435..2873346 1 NC_009698.1 identified by match to protein family HMM PF03613; PTS mannose transporter subunit IID 2873346 5400890 CLC_2721 Clostridium botulinum A str. Hall PTS mannose transporter subunit IID YP_001388557.3 2872435 D 441771 CDS YP_001388558.1 153937260 5401336 2873517..2873927 1 NC_009698.1 identified by match to protein family HMM PF06115; hypothetical protein 2873927 5401336 CLC_2722 Clostridium botulinum A str. Hall hypothetical protein YP_001388558.1 2873517 D 441771 CDS YP_001388559.1 153934896 5400444 2874465..2875181 1 NC_009698.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429; CoA-transferase subunit A 2875181 5400444 CLC_2723 Clostridium botulinum A str. Hall CoA-transferase subunit A YP_001388559.1 2874465 D 441771 CDS YP_001388560.1 153935593 5398660 2875190..2875846 1 NC_009698.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428; CoA-transferase subunit B 2875846 5398660 CLC_2724 Clostridium botulinum A str. Hall CoA-transferase subunit B YP_001388560.1 2875190 D 441771 CDS YP_001388561.1 153936212 5400925 complement(2876428..2876997) 1 NC_009698.1 hypothetical protein 2876997 5400925 CLC_2725 Clostridium botulinum A str. Hall hypothetical protein YP_001388561.1 2876428 R 441771 CDS YP_001388562.1 153937833 5399818 complement(2877216..2877704) 1 NC_009698.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur binding protein 2877704 5399818 CLC_2726 Clostridium botulinum A str. Hall xanthine dehydrogenase, iron-sulfur binding protein YP_001388562.1 2877216 R 441771 CDS YP_001388563.1 153935114 5399214 complement(2877709..2878539) 1 NC_009698.1 identified by match to protein family HMM PF00941; xanthine dehydrogenase, FAD-binding subunit 2878539 5399214 CLC_2727 Clostridium botulinum A str. Hall xanthine dehydrogenase, FAD-binding subunit YP_001388563.1 2877709 R 441771 CDS YP_001388564.1 153935944 5398979 complement(2878536..2880866) 1 NC_009698.1 identified by match to protein family HMM PF01315; match to protein family HMM PF02738; xanthine dehydrogenase, molybdopterin-binding subunit 2880866 5398979 CLC_2728 Clostridium botulinum A str. Hall xanthine dehydrogenase, molybdopterin-binding subunit YP_001388564.1 2878536 R 441771 CDS YP_001388566.1 153936675 5399926 complement(2881928..2883145) 1 NC_009698.1 identified by match to protein family HMM PF00999; monovalent cation:proton antiporter-2 (CPA2) family protein 2883145 5399926 CLC_2730 Clostridium botulinum A str. Hall monovalent cation:proton antiporter-2 (CPA2) family protein YP_001388566.1 2881928 R 441771 CDS YP_001388567.1 153934503 5399531 complement(2884263..2884934) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 2884934 5399531 CLC_2732 Clostridium botulinum A str. Hall HAD family hydrolase YP_001388567.1 2884263 R 441771 CDS YP_001388568.1 153935253 5401485 complement(2885354..2885500) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2885500 5401485 CLC_2733 Clostridium botulinum A str. Hall hypothetical protein YP_001388568.1 2885354 R 441771 CDS YP_001388569.1 153935966 5401813 complement(2885829..2886863) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; chloramphenicol/florfenicol resistance protein 2886863 5401813 CLC_2734 Clostridium botulinum A str. Hall chloramphenicol/florfenicol resistance protein YP_001388569.1 2885829 R 441771 CDS YP_001388570.1 153936737 5401526 complement(2887026..2888504) 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 2888504 5401526 CLC_2735 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001388570.1 2887026 R 441771 CDS YP_001388571.1 153937474 5400220 complement(2889531..2892044) 1 NC_009698.1 identified by match to protein family HMM PF02463; RecF/RecN/SMC domain-containing protein 2892044 5400220 CLC_2736 Clostridium botulinum A str. Hall RecF/RecN/SMC domain-containing protein YP_001388571.1 2889531 R 441771 CDS YP_001388572.1 153937626 5400911 complement(2892049..2892576) 1 NC_009698.1 identified by similarity to GB:AAS43498.1; hypothetical protein 2892576 5400911 CLC_2737 Clostridium botulinum A str. Hall hypothetical protein YP_001388572.1 2892049 R 441771 CDS YP_001388573.1 153936896 5398420 complement(2892557..2894140) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2894140 5398420 CLC_2738 Clostridium botulinum A str. Hall hypothetical protein YP_001388573.1 2892557 R 441771 CDS YP_001388574.1 153936201 5398533 complement(2895026..2895196) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2895196 5398533 CLC_2739 Clostridium botulinum A str. Hall hypothetical protein YP_001388574.1 2895026 R 441771 CDS YP_001388575.1 153936947 5400130 complement(2895268..2895561) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2895561 5400130 CLC_2740 Clostridium botulinum A str. Hall hypothetical protein YP_001388575.1 2895268 R 441771 CDS YP_001388576.1 153934597 5401199 2895905..2896021 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2896021 5401199 CLC_2741 Clostridium botulinum A str. Hall hypothetical protein YP_001388576.1 2895905 D 441771 CDS YP_001388577.1 153936115 5400870 complement(2896169..2896315) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2896315 5400870 CLC_2742 Clostridium botulinum A str. Hall hypothetical protein YP_001388577.1 2896169 R 441771 CDS YP_001388578.1 153934893 5399605 complement(2898124..2899677) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2899677 5399605 CLC_2743 Clostridium botulinum A str. Hall hypothetical protein YP_001388578.1 2898124 R 441771 CDS YP_001388579.1 153937602 5400649 complement(2899694..2900746) 1 NC_009698.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675; DNA-cytosine methyltransferase 2900746 5400649 CLC_2744 Clostridium botulinum A str. Hall DNA-cytosine methyltransferase YP_001388579.1 2899694 R 441771 CDS YP_001388580.1 153936211 5400995 complement(2900766..2900975) 1 NC_009698.1 identified by similarity to GB:BAD50088.1; hypothetical protein 2900975 5400995 CLC_2745 Clostridium botulinum A str. Hall hypothetical protein YP_001388580.1 2900766 R 441771 CDS YP_001388581.1 153935450 5400468 complement(2901405..2902115) 1 NC_009698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase 2902115 5400468 CLC_2746 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001388581.1 2901405 R 441771 CDS YP_001388582.1 153936053 5399213 complement(2902258..2902485) 1 NC_009698.1 hypothetical protein 2902485 5399213 CLC_2747 Clostridium botulinum A str. Hall hypothetical protein YP_001388582.1 2902258 R 441771 CDS YP_001388583.1 153935286 5399948 complement(2902506..2902727) 1 NC_009698.1 hypothetical protein 2902727 5399948 CLC_2748 Clostridium botulinum A str. Hall hypothetical protein YP_001388583.1 2902506 R 441771 CDS YP_001388584.1 153937416 5398658 complement(2902857..2902991) 1 NC_009698.1 identified by similarity to GB:BAC57539.1; hypothetical protein 2902991 5398658 CLC_2749 Clostridium botulinum A str. Hall hypothetical protein YP_001388584.1 2902857 R 441771 CDS YP_001388585.1 153936750 5399863 complement(2903093..2903623) 1 NC_009698.1 identified by match to protein family HMM TIGR02937; sigma-70 family RNA polymerase sigma factor 2903623 5399863 CLC_2750 Clostridium botulinum A str. Hall sigma-70 family RNA polymerase sigma factor YP_001388585.1 2903093 R 441771 CDS YP_001388586.1 153935562 5401323 2904037..2904543 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2904543 5401323 CLC_2751 Clostridium botulinum A str. Hall hypothetical protein YP_001388586.1 2904037 D 441771 CDS YP_001388587.1 153935118 5398493 complement(2904748..2905626) 1 NC_009698.1 identified by match to protein family HMM TIGR01446; DnaA domain-containing protein 2905626 5398493 CLC_2752 Clostridium botulinum A str. Hall DnaA domain-containing protein YP_001388587.1 2904748 R 441771 CDS YP_001388588.1 153934611 5401383 complement(2905703..2905942) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2905942 5401383 CLC_2753 Clostridium botulinum A str. Hall hypothetical protein YP_001388588.1 2905703 R 441771 CDS YP_001388589.1 153935373 5400696 complement(2905949..2906158) 1 NC_009698.1 identified by match to protein family HMM TIGR01764; excisionase 2906158 5400696 CLC_2754 Clostridium botulinum A str. Hall excisionase YP_001388589.1 2905949 R 441771 CDS YP_001388590.1 153936529 5398477 complement(2906223..2906444) 1 NC_009698.1 identified by similarity to GB:CAJ70012.1; hypothetical protein 2906444 5398477 CLC_2755 Clostridium botulinum A str. Hall hypothetical protein YP_001388590.1 2906223 R 441771 CDS YP_001388591.1 153937327 5399699 2906661..2907212 1 NC_009698.1 identified by match to protein family HMM PF01381; immunity repressor protein 2907212 5399699 CLC_2756 Clostridium botulinum A str. Hall immunity repressor protein YP_001388591.1 2906661 D 441771 CDS YP_001388592.1 153935500 5400180 2907285..2908424 1 NC_009698.1 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 2908424 5400180 CLC_2757 Clostridium botulinum A str. Hall phage integrase site specific recombinase YP_001388592.1 2907285 D 441771 CDS YP_001388593.1 153937829 5401643 complement(2908509..2909861) 1 NC_009698.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 2909861 rumA-1 5401643 rumA-1 Clostridium botulinum A str. Hall 23S rRNA (uracil-5-)-methyltransferase RumA YP_001388593.1 2908509 R 441771 CDS YP_001388594.1 153937381 5399668 complement(2910148..2910594) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2910594 5399668 CLC_2759 Clostridium botulinum A str. Hall hypothetical protein YP_001388594.1 2910148 R 441771 CDS YP_001388595.1 153936426 5400555 2910925..2912784 1 NC_009698.1 identified by match to protein family HMM PF00884; sulfatase 2912784 5400555 CLC_2760 Clostridium botulinum A str. Hall sulfatase YP_001388595.1 2910925 D 441771 CDS YP_001388596.1 153934926 5401768 2912810..2913562 1 NC_009698.1 identified by match to protein family HMM PF01925; hypothetical protein 2913562 5401768 CLC_2761 Clostridium botulinum A str. Hall hypothetical protein YP_001388596.1 2912810 D 441771 CDS YP_001388597.1 153936856 5398584 complement(2913972..2914436) 1 NC_009698.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2914436 ribH 5398584 ribH Clostridium botulinum A str. Hall 6,7-dimethyl-8-ribityllumazine synthase YP_001388597.1 2913972 R 441771 CDS YP_001388598.1 153937132 5398671 complement(2914468..2915673) 1 NC_009698.1 identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; bifunctional riboflavin biosynthesis protein RibAB 2915673 ribAB 5398671 ribAB Clostridium botulinum A str. Hall bifunctional riboflavin biosynthesis protein RibAB YP_001388598.1 2914468 R 441771 CDS YP_001388599.1 153934504 5401554 complement(2915981..2916667) 1 NC_009698.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2916667 ribE 5401554 ribE Clostridium botulinum A str. Hall riboflavin synthase subunit alpha YP_001388599.1 2915981 R 441771 CDS YP_001388600.1 153935215 5398525 complement(2916648..2917745) 1 NC_009698.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 2917745 ribD 5398525 ribD Clostridium botulinum A str. Hall riboflavin biosynthesis protein RibD YP_001388600.1 2916648 R 441771 CDS YP_001388601.1 153935964 5401814 complement(2918149..2919585) 1 NC_009698.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893; aminoacyl-histidine dipeptidase 2919585 pepD-3 5401814 pepD-3 Clostridium botulinum A str. Hall aminoacyl-histidine dipeptidase YP_001388601.1 2918149 R 441771 CDS YP_001388602.1 153936427 5400415 2919966..2920859 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2920859 5400415 CLC_2767 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001388602.1 2919966 D 441771 CDS YP_001388603.1 153937389 5398489 complement(2921097..2923742) 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 2923742 mgtA 5398489 mgtA Clostridium botulinum A str. Hall magnesium-translocating P-type ATPase YP_001388603.1 2921097 R 441771 CDS YP_001388604.1 153935302 5398585 complement(2924485..2924889) 1 NC_009698.1 hypothetical protein 2924889 5398585 CLC_2769 Clostridium botulinum A str. Hall hypothetical protein YP_001388604.1 2924485 R 441771 CDS YP_001388605.1 153935859 5400173 complement(2925217..2926458) 1 NC_009698.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 2926458 purD 5400173 purD Clostridium botulinum A str. Hall phosphoribosylamine--glycine ligase YP_001388605.1 2925217 R 441771 CDS YP_001388606.1 153936898 5399190 complement(2926607..2928106) 1 NC_009698.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2928106 purH 5399190 purH Clostridium botulinum A str. Hall bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001388606.1 2926607 R 441771 CDS YP_001388607.1 153937596 5401487 complement(2928320..2928937) 1 NC_009698.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2928937 purN 5401487 purN Clostridium botulinum A str. Hall phosphoribosylglycinamide formyltransferase YP_001388607.1 2928320 R 441771 CDS YP_001388608.1 153936547 5400472 complement(2929065..2930060) 1 NC_009698.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2930060 purM 5400472 purM Clostridium botulinum A str. Hall phosphoribosylaminoimidazole synthetase YP_001388608.1 2929065 R 441771 CDS YP_001388609.1 153935419 5399844 complement(2930121..2931569) 1 NC_009698.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2931569 purF-1 5399844 purF-1 Clostridium botulinum A str. Hall amidophosphoribosyltransferase YP_001388609.1 2930121 R 441771 CDS YP_001388610.1 153934590 5400712 complement(2931661..2932365) 1 NC_009698.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2932365 purC 5400712 purC Clostridium botulinum A str. Hall phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001388610.1 2931661 R 441771 CDS YP_001388611.1 153937694 5400935 complement(2932365..2932844) 1 NC_009698.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 2932844 purE 5400935 purE Clostridium botulinum A str. Hall phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001388611.1 2932365 R 441771 CDS YP_001388612.1 153936046 5399149 2933365..2933499 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2933499 5399149 CLC_2777 Clostridium botulinum A str. Hall hypothetical protein YP_001388612.1 2933365 D 441771 CDS YP_001388613.1 153934938 5399396 complement(2933520..2936075) 1 NC_009698.1 identified by match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738; match to protein family HMM TIGR03311; xanthine dehydrogenase, molybdopterin-binding subunit 2936075 5399396 CLC_2778 Clostridium botulinum A str. Hall xanthine dehydrogenase, molybdopterin-binding subunit YP_001388613.1 2933520 R 441771 CDS YP_001388614.1 153937611 5398233 complement(2936450..2937667) 1 NC_009698.1 Zn-dependent extracellular dipeptidase; similar to succinyl-diaminopimelate desuccinylases; peptidase 2937667 5398233 CLC_2779 Clostridium botulinum A str. Hall peptidase YP_001388614.1 2936450 R 441771 CDS YP_001388615.1 153937272 5398342 complement(2937693..2939021) 1 NC_009698.1 in Escherichia coli expression is induced in response to phase-specific signals and controlled by RpoS; chlorohydrolase/aminohydrolase 2939021 5398342 CLC_2780 Clostridium botulinum A str. Hall chlorohydrolase/aminohydrolase YP_001388615.1 2937693 R 441771 CDS YP_001388616.1 153936071 5400862 complement(2939052..2942069) 1 NC_009698.1 with YgfM and YgfN forms a selenate reductase, which seems to catalyze the reduction of selenate to selenite; YgfK mutants are unable to reduce selenate; involved in purine salvage process; seems to act as an oxidoreductase, but sequence similarity suggests it is a dihydrothymine dehydrogenase; selenate reductase subunit YgfK 2942069 5400862 CLC_2781 Clostridium botulinum A str. Hall selenate reductase subunit YgfK YP_001388616.1 2939052 R 441771 CDS YP_001388617.1 153936984 5400432 complement(2942105..2943301) 1 NC_009698.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR03316; aspartate/ornithine carbamoyltransferase 2943301 5400432 CLC_2782 Clostridium botulinum A str. Hall aspartate/ornithine carbamoyltransferase YP_001388617.1 2942105 R 441771 CDS YP_001388618.1 153935274 5401753 complement(2943643..2945037) 1 NC_009698.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2945037 hydA 5401753 hydA Clostridium botulinum A str. Hall phenylhydantoinase YP_001388618.1 2943643 R 441771 CDS YP_001388619.1 153937740 5401171 complement(2945087..2946493) 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173; xanthine/uracil permease 2946493 5401171 CLC_2784 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001388619.1 2945087 R 441771 CDS YP_001388620.1 153935575 5399298 complement(2946515..2947726) 1 NC_009698.1 catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 2947726 dpaL 5399298 dpaL Clostridium botulinum A str. Hall diaminopropionate ammonia-lyase YP_001388620.1 2946515 R 441771 CDS YP_001388621.1 153934866 5401634 complement(2948011..2949774) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator 2949774 5401634 CLC_2786 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001388621.1 2948011 R 441771 CDS YP_001388622.1 153934881 5398915 2950137..2950874 1 NC_009698.1 identified by match to protein family HMM TIGR03172; hypothetical protein 2950874 5398915 CLC_2787 Clostridium botulinum A str. Hall hypothetical protein YP_001388622.1 2950137 D 441771 CDS YP_001388623.1 153937075 5399253 2950889..2951503 1 NC_009698.1 identified by match to protein family HMM TIGR03310; hypothetical protein 2951503 5399253 CLC_2788 Clostridium botulinum A str. Hall hypothetical protein YP_001388623.1 2950889 D 441771 CDS YP_001388624.1 153936382 5401085 2951484..2952332 1 NC_009698.1 identified by match to protein family HMM TIGR03309; hypothetical protein 2952332 5401085 CLC_2789 Clostridium botulinum A str. Hall hypothetical protein YP_001388624.1 2951484 D 441771 CDS YP_001388625.1 153936043 5400690 2952314..2953123 1 NC_009698.1 identified by match to protein family HMM PF02625; xanthine dehydrogenase accessory factor 2953123 5400690 CLC_2790 Clostridium botulinum A str. Hall xanthine dehydrogenase accessory factor YP_001388625.1 2952314 D 441771 CDS YP_001388626.1 153936431 5398394 2953149..2953694 1 NC_009698.1 hypothetical protein 2953694 5398394 CLC_2791 Clostridium botulinum A str. Hall hypothetical protein YP_001388626.1 2953149 D 441771 CDS YP_001388627.1 153935550 5400877 2953691..2954659 1 NC_009698.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032; iron ABC transporter permease 2954659 5400877 CLC_2792 Clostridium botulinum A str. Hall iron ABC transporter permease YP_001388627.1 2953691 D 441771 CDS YP_001388628.1 153935544 5401045 2954656..2955450 1 NC_009698.1 identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2955450 5401045 CLC_2793 Clostridium botulinum A str. Hall iron ABC transporter ATP-binding protein YP_001388628.1 2954656 D 441771 CDS YP_001388629.1 153936338 5401159 2955502..2956560 1 NC_009698.1 identified by match to protein family HMM PF01497; iron chelate uptake ABC transporter solute-binding protein 2956560 5401159 CLC_2794 Clostridium botulinum A str. Hall iron chelate uptake ABC transporter solute-binding protein YP_001388629.1 2955502 D 441771 CDS YP_001388630.1 153937104 5399968 2956698..2957030 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2957030 5399968 CLC_2795 Clostridium botulinum A str. Hall hypothetical protein YP_001388630.1 2956698 D 441771 CDS YP_001388631.1 153935307 5401400 2957158..2957730 1 NC_009698.1 identified by match to protein family HMM PF00657; GDSL family lipase/acylhydrolase 2957730 5401400 CLC_2796 Clostridium botulinum A str. Hall GDSL family lipase/acylhydrolase YP_001388631.1 2957158 D 441771 CDS YP_001388632.1 153935289 5399474 complement(2957844..2958437) 1 NC_009698.1 identified by match to protein family HMM PF02698; hypothetical protein 2958437 5399474 CLC_2797 Clostridium botulinum A str. Hall hypothetical protein YP_001388632.1 2957844 R 441771 CDS YP_001388633.1 153935871 5398736 complement(2958768..2960270) 1 NC_009698.1 identified by match to protein family HMM PF00860; xanthine/uracil permease 2960270 5398736 CLC_2798 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001388633.1 2958768 R 441771 CDS YP_001388634.1 153936649 5399656 complement(2960798..2962150) 1 NC_009698.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium:alanine symporter family protein 2962150 5399656 CLC_2799 Clostridium botulinum A str. Hall sodium:alanine symporter family protein YP_001388634.1 2960798 R 441771 CDS YP_001388635.1 153937610 5401238 complement(2963100..2965391) 1 NC_009698.1 helicase 2965391 5401238 CLC_2800 Clostridium botulinum A str. Hall helicase YP_001388635.1 2963100 R 441771 CDS YP_001388636.1 153935159 5401137 complement(2965898..2966959) 1 NC_009698.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2966959 mnmA 5401137 mnmA Clostridium botulinum A str. Hall tRNA-specific 2-thiouridylase MnmA YP_001388636.1 2965898 R 441771 CDS YP_001388638.1 153937703 5398991 complement(2967526..2969157) 1 NC_009698.1 identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase 2969157 5398991 CLC_2803 Clostridium botulinum A str. Hall M20/M25/M40 family peptidase YP_001388638.1 2967526 R 441771 CDS YP_001388639.1 153934658 5399233 complement(2969157..2969654) 1 NC_009698.1 hypothetical protein 2969654 5399233 CLC_2804 Clostridium botulinum A str. Hall hypothetical protein YP_001388639.1 2969157 R 441771 CDS YP_001388640.1 153935764 5401595 2969972..2971297 1 NC_009698.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; HlyC/CorC family protein 2971297 5401595 CLC_2805 Clostridium botulinum A str. Hall HlyC/CorC family protein YP_001388640.1 2969972 D 441771 CDS YP_001388641.1 153937026 5400802 complement(2971650..2971940) 1 NC_009698.1 identified by match to protein family HMM PF01910; hypothetical protein 2971940 5400802 CLC_2806 Clostridium botulinum A str. Hall hypothetical protein YP_001388641.1 2971650 R 441771 CDS YP_001388642.1 153937317 5399373 complement(2971959..2973272) 1 NC_009698.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2973272 thiC 5399373 thiC Clostridium botulinum A str. Hall thiamine biosynthesis protein ThiC YP_001388642.1 2971959 R 441771 CDS YP_001388643.1 153937511 5398874 complement(2973483..2974859) 1 NC_009698.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 2974859 purF-2 5398874 purF-2 Clostridium botulinum A str. Hall amidophosphoribosyltransferase YP_001388643.1 2973483 R 441771 CDS YP_001388644.1 153935420 5398942 complement(2975122..2975403) 1 NC_009698.1 identified by match to protein family HMM PF04456; hypothetical protein 2975403 5398942 CLC_2809 Clostridium botulinum A str. Hall hypothetical protein YP_001388644.1 2975122 R 441771 CDS YP_001388645.1 153936574 5401560 complement(2975459..2976148) 1 NC_009698.1 hypothetical protein 2976148 5401560 CLC_2810 Clostridium botulinum A str. Hall hypothetical protein YP_001388645.1 2975459 R 441771 CDS YP_001388646.1 153936745 5400936 complement(2976150..2976800) 1 NC_009698.1 hypothetical protein 2976800 5400936 CLC_2811 Clostridium botulinum A str. Hall hypothetical protein YP_001388646.1 2976150 R 441771 CDS YP_001388647.1 153936405 5399123 complement(2976807..2977664) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2977664 5399123 CLC_2812 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388647.1 2976807 R 441771 CDS YP_001388648.1 153935284 5398543 complement(2977871..2978242) 1 NC_009698.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 2978242 5398543 CLC_2813 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001388648.1 2977871 R 441771 CDS YP_001388649.1 153934489 5398972 2978880..2979392 1 NC_009698.1 hypothetical protein 2979392 5398972 CLC_2814 Clostridium botulinum A str. Hall hypothetical protein YP_001388649.1 2978880 D 441771 CDS YP_001388650.1 153936783 5399861 2979982..2980623 1 NC_009698.1 identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2980623 ribB 5399861 ribB Clostridium botulinum A str. Hall 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001388650.1 2979982 D 441771 CDS YP_001388651.1 153937724 5399075 complement(2980910..2981653) 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2981653 5399075 CLC_2816 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001388651.1 2980910 R 441771 CDS YP_001388652.1 153934702 5401124 2981758..2982435 1 NC_009698.1 identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 2982435 5401124 CLC_2817 Clostridium botulinum A str. Hall cyclic nucleotide-binding protein YP_001388652.1 2981758 D 441771 CDS YP_001388653.1 153935594 5401690 2982524..2982967 1 NC_009698.1 identified by match to protein family HMM PF07486; cell wall hydrolase 2982967 5401690 CLC_2818 Clostridium botulinum A str. Hall cell wall hydrolase YP_001388653.1 2982524 D 441771 CDS YP_001388654.1 153936214 5401715 2982990..2983547 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2983547 5401715 CLC_2819 Clostridium botulinum A str. Hall hypothetical protein YP_001388654.1 2982990 D 441771 CDS YP_001388655.1 153937170 5399819 complement(2983810..2984154) 1 NC_009698.1 identified by match to protein family HMM PF07883; hypothetical protein 2984154 5399819 CLC_2820 Clostridium botulinum A str. Hall hypothetical protein YP_001388655.1 2983810 R 441771 CDS YP_001388656.1 153934784 5399216 complement(2984271..2986433) 1 NC_009698.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062; phage infection protein 2986433 5399216 CLC_2821 Clostridium botulinum A str. Hall phage infection protein YP_001388656.1 2984271 R 441771 CDS YP_001388657.1 153935991 5400080 complement(2986741..2987493) 1 NC_009698.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2987493 5400080 CLC_2822 Clostridium botulinum A str. Hall glycerophosphoryl diester phosphodiesterase YP_001388657.1 2986741 R 441771 CDS YP_001388658.1 153934952 5401416 complement(2987872..2988834) 1 NC_009698.1 hypothetical protein 2988834 5401416 CLC_2823 Clostridium botulinum A str. Hall hypothetical protein YP_001388658.1 2987872 R 441771 CDS YP_001388659.1 153937549 5399044 2989295..2990548 1 NC_009698.1 identified by match to protein family HMM PF00282; decarboxylase 2990548 5399044 CLC_2824 Clostridium botulinum A str. Hall decarboxylase YP_001388659.1 2989295 D 441771 CDS YP_001388661.1 153937101 5398446 complement(2991237..2991770) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 2991770 5398446 CLC_2827 Clostridium botulinum A str. Hall hypothetical protein YP_001388661.1 2991237 R 441771 CDS YP_001388663.1 153935973 5400893 complement(2992617..2993351) 1 NC_009698.1 identified by match to protein family HMM PF02591; hypothetical protein 2993351 5400893 CLC_2829 Clostridium botulinum A str. Hall hypothetical protein YP_001388663.1 2992617 R 441771 CDS YP_001388664.1 153935213 5399421 complement(2993490..2994293) 1 NC_009698.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 2994293 5399421 CLC_2830 Clostridium botulinum A str. Hall hypothetical protein YP_001388664.1 2993490 R 441771 CDS YP_001388665.1 153937294 5401503 complement(2994284..2994973) 1 NC_009698.1 identified by match to protein family HMM PF04816; hypothetical protein 2994973 5401503 CLC_2831 Clostridium botulinum A str. Hall hypothetical protein YP_001388665.1 2994284 R 441771 CDS YP_001388666.1 153936623 5400728 complement(2995049..2995936) 1 NC_009698.1 hypothetical protein 2995936 5400728 CLC_2832 Clostridium botulinum A str. Hall hypothetical protein YP_001388666.1 2995049 R 441771 CDS YP_001388667.1 153937635 5401097 complement(2996010..2997095) 1 NC_009698.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 2997095 rpoD 5401097 rpoD Clostridium botulinum A str. Hall RNA polymerase sigma factor RpoD YP_001388667.1 2996010 R 441771 CDS YP_001388668.1 153936638 5400380 complement(2997120..2998892) 1 NC_009698.1 synthesizes RNA primers at the replication forks; DNA primase 2998892 dnaG 5400380 dnaG Clostridium botulinum A str. Hall DNA primase YP_001388668.1 2997120 R 441771 CDS YP_001388669.1 153936538 5401570 complement(2999176..3000204) 1 NC_009698.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3000204 5401570 CLC_2835 Clostridium botulinum A str. Hall deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001388669.1 2999176 R 441771 CDS YP_001388670.1 153935661 5398509 3000346..3001416 1 NC_009698.1 identified by match to protein family HMM TIGR02906; spore coat protein-like protein 3001416 5398509 CLC_2836 Clostridium botulinum A str. Hall spore coat protein-like protein YP_001388670.1 3000346 D 441771 CDS YP_001388671.1 153935205 5400562 complement(3001469..3004102) 1 NC_009698.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 3004102 ppdK 5400562 ppdK Clostridium botulinum A str. Hall pyruvate phosphate dikinase YP_001388671.1 3001469 R 441771 CDS YP_001388672.1 153937165 5399586 complement(3004182..3004823) 1 NC_009698.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08279; hypothetical protein 3004823 5399586 CLC_2838 Clostridium botulinum A str. Hall hypothetical protein YP_001388672.1 3004182 R 441771 CDS YP_001388673.1 153936663 5398245 complement(3005333..3005953) 1 NC_009698.1 identified by match to protein family HMM PF00627; UBA/TS-N domain-containing protein 3005953 5398245 CLC_2839 Clostridium botulinum A str. Hall UBA/TS-N domain-containing protein YP_001388673.1 3005333 R 441771 CDS YP_008472698.1 532643404 5401005 complement(3005956..3006336) 1 NC_009698.1 DNA repair protein RecD 3006336 5401005 CLC_2840 Clostridium botulinum A str. Hall DNA repair protein RecD YP_008472698.1 3005956 R 441771 CDS YP_001388674.1 153936986 5401791 complement(3006732..3007622) 1 NC_009698.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3007622 era 5401791 era Clostridium botulinum A str. Hall GTP-binding protein Era YP_001388674.1 3006732 R 441771 CDS YP_001388675.1 153936850 5399208 complement(3007638..3008036) 1 NC_009698.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 3008036 cdd 5399208 cdd Clostridium botulinum A str. Hall cytidine deaminase YP_001388675.1 3007638 R 441771 CDS YP_001388676.1 153937420 5401389 complement(3008120..3008818) 1 NC_009698.1 identified by match to protein family HMM PF01219; match to protein family HMM PF01569; diacylglycerol kinase/PAP2 family protein 3008818 5401389 CLC_2843 Clostridium botulinum A str. Hall diacylglycerol kinase/PAP2 family protein YP_001388676.1 3008120 R 441771 CDS YP_001388677.1 153936466 5400937 complement(3008857..3009357) 1 NC_009698.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; metalloprotease 3009357 5400937 CLC_2844 Clostridium botulinum A str. Hall metalloprotease YP_001388677.1 3008857 R 441771 CDS YP_001388678.1 153935422 5400979 complement(3009354..3011441) 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; hydrolase 3011441 5400979 CLC_2845 Clostridium botulinum A str. Hall hydrolase YP_001388678.1 3009354 R 441771 CDS YP_001388679.1 153934666 5398927 complement(3011464..3012624) 1 NC_009698.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876; stage IV sporulation protein 3012624 5398927 CLC_2846 Clostridium botulinum A str. Hall stage IV sporulation protein YP_001388679.1 3011464 R 441771 CDS YP_001388680.1 153935152 5401252 complement(3012614..3012910) 1 NC_009698.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856; sporulation protein YqfC 3012910 yqfC 5401252 yqfC Clostridium botulinum A str. Hall sporulation protein YqfC YP_001388680.1 3012614 R 441771 CDS YP_001388681.1 153937238 5398769 complement(3013024..3013470) 1 NC_009698.1 identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein 3013470 5398769 CLC_2848 Clostridium botulinum A str. Hall GatB/Yqey domain-containing protein YP_001388681.1 3013024 R 441771 CDS YP_001388682.1 153936658 5399734 complement(3013513..3013689) 1 NC_009698.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3013689 rpsU 5399734 rpsU Clostridium botulinum A str. Hall 30S ribosomal protein S21 YP_001388682.1 3013513 R 441771 CDS YP_001388683.1 153936148 5399788 complement(3013826..3014170) 1 NC_009698.1 identified by match to protein family HMM PF01230; HIT family protein 3014170 5399788 CLC_2850 Clostridium botulinum A str. Hall HIT family protein YP_001388683.1 3013826 R 441771 CDS YP_001388684.1 153937595 5400072 complement(3014227..3015525) 1 NC_009698.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; RNA modification protein 3015525 5400072 CLC_2851 Clostridium botulinum A str. Hall RNA modification protein YP_001388684.1 3014227 R 441771 CDS YP_001388685.1 153934969 5398559 complement(3015525..3016283) 1 NC_009698.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3016283 5398559 CLC_2852 Clostridium botulinum A str. Hall 16S ribosomal RNA methyltransferase RsmE YP_001388685.1 3015525 R 441771 CDS YP_001388686.1 153935106 5399843 complement(3016381..3017319) 1 NC_009698.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3017319 prmA 5399843 prmA Clostridium botulinum A str. Hall 50S ribosomal protein L11 methyltransferase YP_001388686.1 3016381 R 441771 CDS YP_001388687.1 153936034 5398302 complement(3017497..3018642) 1 NC_009698.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 3018642 dnaJ 5398302 dnaJ Clostridium botulinum A str. Hall molecular chaperone DnaJ YP_001388687.1 3017497 R 441771 CDS YP_001388688.1 153937016 5400902 complement(3018785..3020656) 1 NC_009698.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3020656 dnaK 5400902 dnaK Clostridium botulinum A str. Hall molecular chaperone DnaK YP_001388688.1 3018785 R 441771 CDS YP_001388689.1 153937179 5399329 complement(3020711..3021355) 1 NC_009698.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 3021355 grpE 5399329 grpE Clostridium botulinum A str. Hall heat shock protein GrpE YP_001388689.1 3020711 R 441771 CDS YP_001388690.1 153935482 5400493 complement(3021382..3022413) 1 NC_009698.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 3022413 hrcA 5400493 hrcA Clostridium botulinum A str. Hall heat-inducible transcription repressor YP_001388690.1 3021382 R 441771 CDS YP_001388691.1 153936410 5399016 complement(3022614..3023756) 1 NC_009698.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3023756 5399016 CLC_2858 Clostridium botulinum A str. Hall coproporphyrinogen III oxidase YP_001388691.1 3022614 R 441771 CDS YP_001388692.1 153937382 5400396 complement(3023783..3025591) 1 NC_009698.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3025591 lepA 5400396 lepA Clostridium botulinum A str. Hall GTP-binding protein LepA YP_001388692.1 3023783 R 441771 CDS YP_001388693.1 153937517 5401276 complement(3025732..3026127) 1 NC_009698.1 hypothetical protein 3026127 5401276 CLC_2860 Clostridium botulinum A str. Hall hypothetical protein YP_001388693.1 3025732 R 441771 CDS YP_001388694.1 153937851 5401769 complement(3026198..3027289) 1 NC_009698.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867; stage II sporulation protein 3027289 5401769 CLC_2861 Clostridium botulinum A str. Hall stage II sporulation protein YP_001388694.1 3026198 R 441771 CDS YP_001388695.1 153935929 5401548 complement(3027474..3028448) 1 NC_009698.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 3028448 gpr 5401548 gpr Clostridium botulinum A str. Hall germination protease YP_001388695.1 3027474 R 441771 CDS YP_001388696.1 153936697 5398796 3028658..3028924 1 NC_009698.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3028924 rpsT 5398796 rpsT Clostridium botulinum A str. Hall 30S ribosomal protein S20 YP_001388696.1 3028658 D 441771 CDS YP_001388697.1 153934875 5398331 complement(3028959..3029990) 1 NC_009698.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3029990 holA 5398331 holA Clostridium botulinum A str. Hall DNA polymerase III subunit delta YP_001388697.1 3028959 R 441771 CDS YP_001388698.1 153935611 5400443 complement(3030019..3031806) 1 NC_009698.1 identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; ComEC/Rec2 family protein 3031806 5400443 CLC_2865 Clostridium botulinum A str. Hall ComEC/Rec2 family protein YP_001388698.1 3030019 R 441771 CDS YP_001388699.1 153936536 5399103 complement(3031818..3032048) 1 NC_009698.1 hypothetical protein 3032048 5399103 CLC_2866 Clostridium botulinum A str. Hall hypothetical protein YP_001388699.1 3031818 R 441771 CDS YP_001388700.1 153937064 5400553 complement(3032153..3034747) 1 NC_009698.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00690; cation transporting ATPase 3034747 5400553 CLC_2867 Clostridium botulinum A str. Hall cation transporting ATPase YP_001388700.1 3032153 R 441771 CDS YP_008472699.1 532643405 5400675 complement(3035256..3036770) 1 NC_009698.1 membrane protein 3036770 5400675 CLC_2868 Clostridium botulinum A str. Hall membrane protein YP_008472699.1 3035256 R 441771 CDS YP_001388703.1 153936989 5400744 complement(3038491..3040398) 1 NC_009698.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 3040398 selB 5400744 selB Clostridium botulinum A str. Hall selenocysteine-specific translation elongation factor YP_001388703.1 3038491 R 441771 CDS YP_001388704.1 153937652 5400931 complement(3040417..3041805) 1 NC_009698.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 3041805 selA 5400931 selA Clostridium botulinum A str. Hall selenocysteine synthase YP_001388704.1 3040417 R 441771 CDS YP_001388705.1 153936687 5401392 complement(3041872..3042951) 1 NC_009698.1 Selenoprotein. identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 3042951 selD 5401392 selD Clostridium botulinum A str. Hall selenide, water dikinase YP_001388705.1 3041872 R 441771 CDS YP_001388706.1 153934900 5401664 complement(3043057..3043665) 1 NC_009698.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426; comE operon protein 1 3043665 5401664 CLC_2875 Clostridium botulinum A str. Hall comE operon protein 1 YP_001388706.1 3043057 R 441771 CDS YP_001388707.1 153936108 5400990 3043854..3045101 1 NC_009698.1 identified by match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 3045101 5400990 CLC_2876 Clostridium botulinum A str. Hall D-alanyl-D-alanine carboxypeptidase YP_001388707.1 3043854 D 441771 CDS YP_001388708.1 153936215 5400929 complement(3045209..3046111) 1 NC_009698.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 3046111 5400929 CLC_2877 Clostridium botulinum A str. Hall RluA family pseudouridine synthase YP_001388708.1 3045209 R 441771 CDS YP_001388709.1 153937670 5400387 complement(3046437..3046817) 1 NC_009698.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 3046817 5400387 CLC_2878 Clostridium botulinum A str. Hall endoribonuclease L-PSP YP_001388709.1 3046437 R 441771 CDS YP_001388710.1 153935197 5399217 complement(3046833..3048107) 1 NC_009698.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350; cell envelope-related function transcriptional attenuator 3048107 5399217 CLC_2879 Clostridium botulinum A str. Hall cell envelope-related function transcriptional attenuator YP_001388710.1 3046833 R 441771 CDS YP_001388711.1 153936548 5401671 complement(3048118..3048687) 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488; HDIG domain-containing protein 3048687 5401671 CLC_2880 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001388711.1 3048118 R 441771 CDS YP_001388712.1 153936657 5398689 complement(3048770..3049375) 1 NC_009698.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 3049375 nadD 5398689 nadD Clostridium botulinum A str. Hall nicotinic acid mononucleotide adenylyltransferase YP_001388712.1 3048770 R 441771 CDS YP_001388713.1 153934556 5400713 complement(3049618..3049911) 1 NC_009698.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253; RNA-binding protein 3049911 5400713 CLC_2882 Clostridium botulinum A str. Hall RNA-binding protein YP_001388713.1 3049618 R 441771 CDS YP_001388714.1 153935501 5400071 complement(3049938..3051212) 1 NC_009698.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 3051212 obgE 5400071 obgE Clostridium botulinum A str. Hall GTPase ObgE YP_001388714.1 3049938 R 441771 CDS YP_001388715.1 153937194 5399385 complement(3051591..3051893) 1 NC_009698.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 3051893 rpmA 5399385 rpmA Clostridium botulinum A str. Hall 50S ribosomal protein L27 YP_001388715.1 3051591 R 441771 CDS YP_001388716.1 153936223 5399669 complement(3051896..3052222) 1 NC_009698.1 identified by match to protein family HMM PF04327; hypothetical protein 3052222 5399669 CLC_2885 Clostridium botulinum A str. Hall hypothetical protein YP_001388716.1 3051896 R 441771 CDS YP_001388717.1 153935719 5400924 complement(3052225..3052539) 1 NC_009698.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 3052539 rplU 5400924 rplU Clostridium botulinum A str. Hall 50S ribosomal protein L21 YP_001388717.1 3052225 R 441771 CDS YP_001388718.1 153934768 5401131 complement(3052663..3054102) 1 NC_009698.1 identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 3054102 5401131 CLC_2887 Clostridium botulinum A str. Hall ribonuclease YP_001388718.1 3052663 R 441771 CDS YP_001388719.1 153936411 5400664 complement(3054260..3054973) 1 NC_009698.1 hypothetical protein 3054973 5400664 CLC_2888 Clostridium botulinum A str. Hall hypothetical protein YP_001388719.1 3054260 R 441771 CDS YP_001388720.1 153936719 5401301 complement(3054951..3056801) 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3056801 5401301 CLC_2889 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001388720.1 3054951 R 441771 CDS YP_001388721.1 153935761 5400051 complement(3056914..3057765) 1 NC_009698.1 identified by match to protein family HMM PF02163; metalloprotease 3057765 5400051 CLC_2890 Clostridium botulinum A str. Hall metalloprotease YP_001388721.1 3056914 R 441771 CDS YP_001388722.1 153935220 5398448 complement(3057820..3058605) 1 NC_009698.1 identified by match to protein family HMM PF01551; M24/M37 family peptidase 3058605 5398448 CLC_2891 Clostridium botulinum A str. Hall M24/M37 family peptidase YP_001388722.1 3057820 R 441771 CDS YP_001388723.1 153937010 5398362 complement(3058925..3060043) 1 NC_009698.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 3060043 rodA-2 5398362 rodA-2 Clostridium botulinum A str. Hall rod shape-determining protein RodA YP_001388723.1 3058925 R 441771 CDS YP_001388724.1 153936025 5398740 complement(3060142..3060405) 1 NC_009698.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 3060405 minE 5398740 minE Clostridium botulinum A str. Hall cell division topological specificity factor MinE YP_001388724.1 3060142 R 441771 CDS YP_001388725.1 153934618 5398592 complement(3060419..3061216) 1 NC_009698.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 3061216 minD 5398592 minD Clostridium botulinum A str. Hall septum site-determining protein MinD YP_001388725.1 3060419 R 441771 CDS YP_001388726.1 153936332 5398842 complement(3061234..3061863) 1 NC_009698.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 3061863 minC 5398842 minC Clostridium botulinum A str. Hall septum formation inhibitor YP_001388726.1 3061234 R 441771 CDS YP_001388727.1 153937432 5401742 complement(3062038..3064812) 1 NC_009698.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 3064812 5401742 CLC_2896 Clostridium botulinum A str. Hall penicillin-binding protein YP_001388727.1 3062038 R 441771 CDS YP_001388728.1 153934754 5398386 complement(3064832..3065323) 1 NC_009698.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426; rod shape-determining protein MreD 3065323 mreD 5398386 mreD Clostridium botulinum A str. Hall rod shape-determining protein MreD YP_001388728.1 3064832 R 441771 CDS YP_001388729.1 153935052 5400917 complement(3065334..3066179) 1 NC_009698.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 3066179 mreC 5400917 mreC Clostridium botulinum A str. Hall rod shape-determining protein MreC YP_001388729.1 3065334 R 441771 CDS YP_001388730.1 153936830 5400157 complement(3066186..3067196) 1 NC_009698.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 3067196 5400157 CLC_2899 Clostridium botulinum A str. Hall rod shape-determining protein MreB YP_001388730.1 3066186 R 441771 CDS YP_001388731.1 153937584 5399131 complement(3067225..3067911) 1 NC_009698.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 3067911 radC 5399131 radC Clostridium botulinum A str. Hall DNA repair protein RadC YP_001388731.1 3067225 R 441771 CDS YP_001388732.1 153935260 5398866 complement(3067926..3068510) 1 NC_009698.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 3068510 maf 5398866 maf Clostridium botulinum A str. Hall Maf-like protein YP_001388732.1 3067926 R 441771 CDS YP_001388733.1 153935350 5399620 complement(3068526..3068783) 1 NC_009698.1 hypothetical protein 3068783 5399620 CLC_2902 Clostridium botulinum A str. Hall hypothetical protein YP_001388733.1 3068526 R 441771 CDS YP_001388734.1 153937144 5399240 complement(3068893..3069594) 1 NC_009698.1 hypothetical protein 3069594 5399240 CLC_2903 Clostridium botulinum A str. Hall hypothetical protein YP_001388734.1 3068893 R 441771 CDS YP_001388735.1 153936645 5398622 complement(3069820..3070359) 1 NC_009698.1 hypothetical protein 3070359 5398622 CLC_2904 Clostridium botulinum A str. Hall hypothetical protein YP_001388735.1 3069820 R 441771 CDS YP_001388736.1 153936247 5398627 3070785..3071339 1 NC_009698.1 identified by match to protein family HMM PF02567; hypothetical protein 3071339 5398627 CLC_2905 Clostridium botulinum A str. Hall hypothetical protein YP_001388736.1 3070785 D 441771 CDS YP_001388737.1 153935739 5399116 complement(3071398..3071835) 1 NC_009698.1 identified by match to protein family HMM PF01842; hypothetical protein 3071835 pheB 5399116 pheB Clostridium botulinum A str. Hall hypothetical protein YP_001388737.1 3071398 R 441771 CDS YP_001388738.1 153937201 5398859 complement(3071892..3072026) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3072026 5398859 CLC_2907 Clostridium botulinum A str. Hall hypothetical protein YP_001388738.1 3071892 R 441771 CDS YP_001388739.1 153936288 5400449 complement(3072570..3073094) 1 NC_009698.1 identified by match to protein family HMM PF01464; transglycosylase 3073094 5400449 CLC_2909 Clostridium botulinum A str. Hall transglycosylase YP_001388739.1 3072570 R 441771 CDS YP_001388740.1 153936121 5401794 complement(3073133..3073771) 1 NC_009698.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 3073771 coaE 5401794 coaE Clostridium botulinum A str. Hall dephospho-CoA kinase YP_001388740.1 3073133 R 441771 CDS YP_001388741.1 153935166 5399735 complement(3073783..3076410) 1 NC_009698.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 3076410 polA 5399735 polA Clostridium botulinum A str. Hall DNA polymerase I YP_001388741.1 3073783 R 441771 CDS YP_001388742.1 153936981 5399612 complement(3076428..3077552) 1 NC_009698.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 3077552 aroC 5399612 aroC Clostridium botulinum A str. Hall chorismate synthase YP_001388742.1 3076428 R 441771 CDS YP_001388743.1 153935980 5401168 complement(3077694..3078464) 1 NC_009698.1 identified by match to protein family HMM PF01520; match to protein family HMM PF08239; N-acetylmuramoyl-L-alanine amidase 3078464 5401168 CLC_2913 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001388743.1 3077694 R 441771 CDS YP_001388744.1 153935451 5401515 complement(3078611..3078805) 1 NC_009698.1 hypothetical protein 3078805 5401515 CLC_2914 Clostridium botulinum A str. Hall hypothetical protein YP_001388744.1 3078611 R 441771 CDS YP_001388745.1 153936202 5399949 complement(3078824..3079078) 1 NC_009698.1 hypothetical protein 3079078 5399949 CLC_2915 Clostridium botulinum A str. Hall hypothetical protein YP_001388745.1 3078824 R 441771 CDS YP_001388746.1 153937689 5401200 complement(3079234..3080148) 1 NC_009698.1 hypothetical protein 3080148 5401200 CLC_2916 Clostridium botulinum A str. Hall hypothetical protein YP_001388746.1 3079234 R 441771 CDS YP_001388747.1 153934787 5400278 complement(3080222..3081220) 1 NC_009698.1 hypothetical protein 3081220 5400278 CLC_2917 Clostridium botulinum A str. Hall hypothetical protein YP_001388747.1 3080222 R 441771 CDS YP_001388748.1 153935981 5400040 complement(3081317..3082657) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3082657 5400040 CLC_2918 Clostridium botulinum A str. Hall hypothetical protein YP_001388748.1 3081317 R 441771 CDS YP_001388749.1 153936957 5400426 complement(3082671..3084428) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3084428 5400426 CLC_2919 Clostridium botulinum A str. Hall hypothetical protein YP_001388749.1 3082671 R 441771 CDS YP_001388750.1 153934605 5398250 complement(3084526..3085611) 1 NC_009698.1 hypothetical protein 3085611 5398250 CLC_2920 Clostridium botulinum A str. Hall hypothetical protein YP_001388750.1 3084526 R 441771 CDS YP_001388751.1 153935541 5401221 complement(3085623..3086621) 1 NC_009698.1 hypothetical protein 3086621 5401221 CLC_2921 Clostridium botulinum A str. Hall hypothetical protein YP_001388751.1 3085623 R 441771 CDS YP_001388752.1 153936118 5398439 complement(3086633..3086887) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3086887 5398439 CLC_2922 Clostridium botulinum A str. Hall hypothetical protein YP_001388752.1 3086633 R 441771 CDS YP_001388753.1 153937065 5400652 complement(3086893..3088788) 1 NC_009698.1 hypothetical protein 3088788 5400652 CLC_2923 Clostridium botulinum A str. Hall hypothetical protein YP_001388753.1 3086893 R 441771 CDS YP_001388754.1 153935167 5401349 complement(3088803..3090041) 1 NC_009698.1 hypothetical protein 3090041 5401349 CLC_2924 Clostridium botulinum A str. Hall hypothetical protein YP_001388754.1 3088803 R 441771 CDS YP_001388755.1 153935771 5400333 complement(3090064..3091044) 1 NC_009698.1 hypothetical protein 3091044 5400333 CLC_2925 Clostridium botulinum A str. Hall hypothetical protein YP_001388755.1 3090064 R 441771 CDS YP_001388756.1 153936216 5398610 complement(3091046..3092386) 1 NC_009698.1 identified by match to protein family HMM PF00656; hypothetical protein 3092386 5398610 CLC_2926 Clostridium botulinum A str. Hall hypothetical protein YP_001388756.1 3091046 R 441771 CDS YP_001388757.1 153937329 5401277 complement(3092401..3092742) 1 NC_009698.1 hypothetical protein 3092742 5401277 CLC_2927 Clostridium botulinum A str. Hall hypothetical protein YP_001388757.1 3092401 R 441771 CDS YP_001388758.1 153935935 5399449 complement(3092755..3093840) 1 NC_009698.1 hypothetical protein 3093840 5399449 CLC_2928 Clostridium botulinum A str. Hall hypothetical protein YP_001388758.1 3092755 R 441771 CDS YP_001388759.1 153935652 5401645 complement(3093827..3094261) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3094261 5401645 CLC_2929 Clostridium botulinum A str. Hall hypothetical protein YP_001388759.1 3093827 R 441771 CDS YP_001388760.1 153937854 5401375 complement(3094274..3095815) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3095815 5401375 CLC_2930 Clostridium botulinum A str. Hall hypothetical protein YP_001388760.1 3094274 R 441771 CDS YP_001388761.1 153934953 5398709 complement(3095891..3096058) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3096058 5398709 CLC_2931 Clostridium botulinum A str. Hall hypothetical protein YP_001388761.1 3095891 R 441771 CDS YP_001388762.1 153935431 5401516 complement(3096093..3096509) 1 NC_009698.1 hypothetical protein 3096509 5401516 CLC_2932 Clostridium botulinum A str. Hall hypothetical protein YP_001388762.1 3096093 R 441771 CDS YP_001388763.1 153936843 5400626 complement(3096525..3097412) 1 NC_009698.1 hypothetical protein 3097412 5400626 CLC_2933 Clostridium botulinum A str. Hall hypothetical protein YP_001388763.1 3096525 R 441771 CDS YP_001388764.1 153937321 5401356 complement(3097417..3097836) 1 NC_009698.1 hypothetical protein 3097836 5401356 CLC_2934 Clostridium botulinum A str. Hall hypothetical protein YP_001388764.1 3097417 R 441771 CDS YP_001388765.1 153937507 5401190 complement(3097842..3098189) 1 NC_009698.1 hypothetical protein 3098189 5401190 CLC_2935 Clostridium botulinum A str. Hall hypothetical protein YP_001388765.1 3097842 R 441771 CDS YP_001388766.1 153936728 5399520 complement(3098194..3098559) 1 NC_009698.1 hypothetical protein 3098559 5399520 CLC_2936 Clostridium botulinum A str. Hall hypothetical protein YP_001388766.1 3098194 R 441771 CDS YP_001388767.1 153937503 5400329 complement(3098559..3098843) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3098843 5400329 CLC_2937 Clostridium botulinum A str. Hall hypothetical protein YP_001388767.1 3098559 R 441771 CDS YP_001388768.1 153937455 5399573 complement(3099530..3100051) 1 NC_009698.1 hypothetical protein 3100051 5399573 CLC_2938 Clostridium botulinum A str. Hall hypothetical protein YP_001388768.1 3099530 R 441771 CDS YP_001388769.1 153934612 5400412 complement(3100224..3100475) 1 NC_009698.1 hypothetical protein 3100475 5400412 CLC_2939 Clostridium botulinum A str. Hall hypothetical protein YP_001388769.1 3100224 R 441771 CDS YP_001388770.1 153935327 5399654 complement(3100532..3101332) 1 NC_009698.1 hypothetical protein 3101332 5399654 CLC_2940 Clostridium botulinum A str. Hall hypothetical protein YP_001388770.1 3100532 R 441771 CDS YP_001388771.1 153935097 5399461 complement(3102320..3102532) 1 NC_009698.1 DNA-binding protein 3102532 5399461 CLC_2942 Clostridium botulinum A str. Hall DNA-binding protein YP_001388771.1 3102320 R 441771 CDS YP_001388772.1 153937783 5399765 complement(3102594..3102803) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 3102803 5399765 CLC_2943 Clostridium botulinum A str. Hall DNA-binding protein YP_001388772.1 3102594 R 441771 CDS YP_001388773.1 153936433 5399728 3102995..3103405 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 3103405 5399728 CLC_2944 Clostridium botulinum A str. Hall DNA-binding protein YP_001388773.1 3102995 D 441771 CDS YP_001388774.1 153935861 5398730 3103707..3103856 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3103856 5398730 CLC_2945 Clostridium botulinum A str. Hall hypothetical protein YP_001388774.1 3103707 D 441771 CDS YP_001388775.1 153935293 5400112 3104937..3106424 1 NC_009698.1 identified by match to protein family HMM PF03062; alginate O-acetyltransferase AlgI 3106424 5400112 CLC_2948 Clostridium botulinum A str. Hall alginate O-acetyltransferase AlgI YP_001388775.1 3104937 D 441771 CDS YP_001388776.1 153937801 5400450 3106437..3107888 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3107888 5400450 CLC_2949 Clostridium botulinum A str. Hall hypothetical protein YP_001388776.1 3106437 D 441771 CDS YP_001388777.1 153935502 5398844 complement(3108060..3108263) 1 NC_009698.1 identified by match to protein family HMM PF00269; small, acid-soluble spore protein 3108263 5398844 CLC_2950 Clostridium botulinum A str. Hall small, acid-soluble spore protein YP_001388777.1 3108060 R 441771 CDS YP_001388778.1 153934561 5399930 complement(3108448..3108588) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3108588 5399930 CLC_2951 Clostridium botulinum A str. Hall hypothetical protein YP_001388778.1 3108448 R 441771 CDS YP_001388779.1 153937442 5400451 complement(3108827..3108946) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3108946 5400451 CLC_2952 Clostridium botulinum A str. Hall hypothetical protein YP_001388779.1 3108827 R 441771 CDS YP_001388780.1 153934669 5398467 complement(3109003..3109293) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3109293 5398467 CLC_2953 Clostridium botulinum A str. Hall hypothetical protein YP_001388780.1 3109003 R 441771 CDS YP_001388781.1 153937316 5399440 complement(3109434..3109562) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3109562 5399440 CLC_2954 Clostridium botulinum A str. Hall hypothetical protein YP_001388781.1 3109434 R 441771 CDS YP_001388782.1 153936571 5398772 3109734..3110162 1 NC_009698.1 identified by match to protein family HMM PF04246; sigma-E factor regulator 3110162 5398772 CLC_2955 Clostridium botulinum A str. Hall sigma-E factor regulator YP_001388782.1 3109734 D 441771 CDS YP_001388783.1 153936865 5398941 complement(3110197..3111978) 1 NC_009698.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3111978 aspS 5398941 aspS Clostridium botulinum A str. Hall aspartyl-tRNA synthetase YP_001388783.1 3110197 R 441771 CDS YP_001388784.1 153937842 5401734 complement(3112019..3113266) 1 NC_009698.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3113266 hisS 5401734 hisS Clostridium botulinum A str. Hall histidyl-tRNA synthetase YP_001388784.1 3112019 R 441771 CDS YP_001388785.1 153936844 5398679 complement(3113285..3114715) 1 NC_009698.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 3114715 5398679 CLC_2958 Clostridium botulinum A str. Hall coproporphyrinogen III oxidase YP_001388785.1 3113285 R 441771 CDS YP_001388786.1 153935894 5399227 complement(3114753..3115352) 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 3115352 5399227 CLC_2959 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001388786.1 3114753 R 441771 CDS YP_001388787.1 153934993 5401718 complement(3115413..3115862) 1 NC_009698.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 3115862 dtd 5401718 dtd Clostridium botulinum A str. Hall D-tyrosyl-tRNA(Tyr) deacylase YP_001388787.1 3115413 R 441771 CDS YP_001388788.1 153936238 5399715 complement(3115905..3118076) 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 3118076 relA 5399715 relA Clostridium botulinum A str. Hall GTP pyrophosphokinase YP_001388788.1 3115905 R 441771 CDS YP_001388789.1 153935557 5400310 complement(3118200..3118718) 1 NC_009698.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 3118718 apt 5400310 apt Clostridium botulinum A str. Hall adenine phosphoribosyltransferase YP_001388789.1 3118200 R 441771 CDS YP_001388790.1 153935172 5399511 complement(3118827..3119705) 1 NC_009698.1 identified by match to protein family HMM PF01368; DHH domain-containing protein 3119705 5399511 CLC_2963 Clostridium botulinum A str. Hall DHH domain-containing protein YP_001388790.1 3118827 R 441771 CDS YP_001388791.1 153937085 5398519 complement(3119934..3120797) 1 NC_009698.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3120797 secF 5398519 secF Clostridium botulinum A str. Hall preprotein translocase subunit SecF YP_001388791.1 3119934 R 441771 CDS YP_001388792.1 153935196 5401481 complement(3120799..3122067) 1 NC_009698.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3122067 secD 5401481 secD Clostridium botulinum A str. Hall preprotein translocase subunit SecD YP_001388792.1 3120799 R 441771 CDS YP_001388793.1 153935318 5398965 complement(3122161..3123528) 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3123528 5398965 CLC_2966 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001388793.1 3122161 R 441771 CDS YP_001388794.1 153937505 5398688 complement(3123685..3123822) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3123822 5398688 CLC_2967 Clostridium botulinum A str. Hall hypothetical protein YP_001388794.1 3123685 R 441771 CDS YP_001388795.1 153937806 5401009 complement(3123912..3124280) 1 NC_009698.1 hypothetical protein 3124280 5401009 CLC_2968 Clostridium botulinum A str. Hall hypothetical protein YP_001388795.1 3123912 R 441771 CDS YP_001388796.1 153936693 5400414 complement(3124335..3124670) 1 NC_009698.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 3124670 yajC 5400414 yajC Clostridium botulinum A str. Hall preprotein translocase subunit YajC YP_001388796.1 3124335 R 441771 CDS YP_001388797.1 153935906 5399549 complement(3124850..3125980) 1 NC_009698.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3125980 tgt 5399549 tgt Clostridium botulinum A str. Hall queuine tRNA-ribosyltransferase YP_001388797.1 3124850 R 441771 CDS YP_001388798.1 153935623 5400586 complement(3126036..3127061) 1 NC_009698.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3127061 queA 5400586 queA Clostridium botulinum A str. Hall S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001388798.1 3126036 R 441771 CDS YP_001388799.1 153937310 5398375 complement(3127095..3128123) 1 NC_009698.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3128123 ruvB 5398375 ruvB Clostridium botulinum A str. Hall Holliday junction DNA helicase RuvB YP_001388799.1 3127095 R 441771 CDS YP_001388800.1 153936604 5401784 complement(3128143..3128736) 1 NC_009698.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 3128736 ruvA 5401784 ruvA Clostridium botulinum A str. Hall Holliday junction DNA helicase RuvA YP_001388800.1 3128143 R 441771 CDS YP_001388801.1 153935446 5399245 complement(3128918..3129529) 1 NC_009698.1 hypothetical protein 3129529 5399245 CLC_2974 Clostridium botulinum A str. Hall hypothetical protein YP_001388801.1 3128918 R 441771 CDS YP_001388802.1 153935126 5401081 complement(3129906..3130646) 1 NC_009698.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 3130646 5401081 CLC_2975 Clostridium botulinum A str. Hall hypothetical protein YP_001388802.1 3129906 R 441771 CDS YP_001388803.1 153935411 5398720 complement(3130797..3131447) 1 NC_009698.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257; hypothetical protein 3131447 5398720 CLC_2976 Clostridium botulinum A str. Hall hypothetical protein YP_001388803.1 3130797 R 441771 CDS YP_001388804.1 153934476 5398268 complement(3131463..3132125) 1 NC_009698.1 identified by match to protein family HMM PF03130; PBS lyase 3132125 5398268 CLC_2977 Clostridium botulinum A str. Hall PBS lyase YP_001388804.1 3131463 R 441771 CDS YP_001388805.1 153937430 5400291 complement(3132213..3133631) 1 NC_009698.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392; GntR family transcriptional regulator 3133631 5400291 CLC_2978 Clostridium botulinum A str. Hall GntR family transcriptional regulator YP_001388805.1 3132213 R 441771 CDS YP_001388806.1 153936451 5398648 complement(3133917..3134810) 1 NC_009698.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 3134810 5398648 CLC_2979 Clostridium botulinum A str. Hall nucleotidyltransferase domain-containing protein YP_001388806.1 3133917 R 441771 CDS YP_001388807.1 153937475 5398384 complement(3134960..3135181) 1 NC_009698.1 hypothetical protein 3135181 5398384 CLC_2980 Clostridium botulinum A str. Hall hypothetical protein YP_001388807.1 3134960 R 441771 CDS YP_001388808.1 153936481 5400603 complement(3135354..3135512) 1 NC_009698.1 identified by match to protein family HMM PF00301; rubredoxin 3135512 5400603 CLC_2981 Clostridium botulinum A str. Hall rubredoxin YP_001388808.1 3135354 R 441771 CDS YP_001388809.1 153935967 5398421 complement(3135641..3137425) 1 NC_009698.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156; GTP-binding protein 3137425 5398421 CLC_2982 Clostridium botulinum A str. Hall GTP-binding protein YP_001388809.1 3135641 R 441771 CDS YP_001388810.1 153935027 5400341 3137567..3138091 1 NC_009698.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 3138091 hpt-1 5400341 hpt-1 Clostridium botulinum A str. Hall hypoxanthine phosphoribosyltransferase YP_001388810.1 3137567 D 441771 CDS YP_001388811.1 153936276 5400221 complement(3138128..3138682) 1 NC_009698.1 identified by match to protein family HMM TIGR02832; hypothetical protein 3138682 5400221 CLC_2984 Clostridium botulinum A str. Hall hypothetical protein YP_001388811.1 3138128 R 441771 CDS YP_001388812.1 153935583 5401037 3138954..3141446 1 NC_009698.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 3141446 5401037 CLC_2985 Clostridium botulinum A str. Hall 1A family penicillin-binding protein YP_001388812.1 3138954 D 441771 CDS YP_001388813.1 153934940 5399496 complement(3141476..3141832) 1 NC_009698.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839; SpoVA family protein 3141832 5399496 CLC_2986 Clostridium botulinum A str. Hall SpoVA family protein YP_001388813.1 3141476 R 441771 CDS YP_001388814.1 153935904 5399944 complement(3141848..3142855) 1 NC_009698.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845; stage V sporulation protein AD 3142855 5399944 CLC_2987 Clostridium botulinum A str. Hall stage V sporulation protein AD YP_001388814.1 3141848 R 441771 CDS YP_001388815.1 153934965 5398344 complement(3142878..3143333) 1 NC_009698.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838; SpoVA family protein 3143333 5398344 CLC_2988 Clostridium botulinum A str. Hall SpoVA family protein YP_001388815.1 3142878 R 441771 CDS YP_001388816.1 153935896 5398373 complement(3143535..3144290) 1 NC_009698.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 3144290 sigF 5398373 sigF Clostridium botulinum A str. Hall sporulation sigma factor SigF YP_001388816.1 3143535 R 441771 CDS YP_001388817.1 153936982 5398298 complement(3144309..3144731) 1 NC_009698.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 3144731 spoIIAB 5398298 spoIIAB Clostridium botulinum A str. Hall anti-sigma F factor YP_001388817.1 3144309 R 441771 CDS YP_001388818.1 153937077 5399717 complement(3144748..3145083) 1 NC_009698.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886; anti-sigma F factor antagonist 3145083 spoIIAA 5399717 spoIIAA Clostridium botulinum A str. Hall anti-sigma F factor antagonist YP_001388818.1 3144748 R 441771 CDS YP_001388819.1 153934578 5401169 complement(3145384..3147117) 1 NC_009698.1 modification methylase 3147117 5401169 CLC_2992 Clostridium botulinum A str. Hall modification methylase YP_001388819.1 3145384 R 441771 CDS YP_001388820.1 153935641 5401351 3147184..3148158 1 NC_009698.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884; polysaccharide deacetylase 3148158 5401351 CLC_2993 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001388820.1 3147184 D 441771 CDS YP_001388821.1 153937523 5401781 complement(3148247..3148963) 1 NC_009698.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase 3148963 5401781 CLC_2994 Clostridium botulinum A str. Hall WecB/TagA/CpsF family glycosyl transferase YP_001388821.1 3148247 R 441771 CDS YP_001388822.1 153937311 5399885 complement(3149291..3149944) 1 NC_009698.1 identified by match to protein family HMM PF02397; sugar transferase 3149944 5399885 CLC_2995 Clostridium botulinum A str. Hall sugar transferase YP_001388822.1 3149291 R 441771 CDS YP_001388823.1 153935999 5398240 complement(3149965..3151389) 1 NC_009698.1 identified by match to protein family HMM PF01943; polysaccharide transporter 3151389 5398240 CLC_2996 Clostridium botulinum A str. Hall polysaccharide transporter YP_001388823.1 3149965 R 441771 CDS YP_001388824.1 153936791 5399246 complement(3151787..3153343) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 3153343 mviN 5399246 mviN Clostridium botulinum A str. Hall integral membrane protein MviN YP_001388824.1 3151787 R 441771 CDS YP_001388825.1 153937547 5398910 complement(3153362..3154465) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3154465 5398910 CLC_2998 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388825.1 3153362 R 441771 CDS YP_001388826.1 153934751 5401029 complement(3154575..3155702) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3155702 5401029 CLC_2999 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388826.1 3154575 R 441771 CDS YP_001388827.1 153935601 5399380 complement(3155817..3157049) 1 NC_009698.1 identified by match to protein family HMM PF04932; exopolysaccharide biosynthesis family protein 3157049 5399380 CLC_3000 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis family protein YP_001388827.1 3155817 R 441771 CDS YP_001388828.1 153934593 5399002 complement(3157127..3158353) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3158353 5399002 CLC_3001 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388828.1 3157127 R 441771 CDS YP_001388829.1 153935332 5401451 complement(3158372..3159430) 1 NC_009698.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 3159430 5401451 CLC_3002 Clostridium botulinum A str. Hall UDP-N-acetylglucosamine 2-epimerase YP_001388829.1 3158372 R 441771 CDS YP_001388830.1 153937357 5399152 complement(3159430..3160524) 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3160524 5399152 CLC_3003 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001388830.1 3159430 R 441771 CDS YP_001388831.1 153935128 5400011 complement(3160547..3161650) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3161650 5400011 CLC_3004 Clostridium botulinum A str. Hall hypothetical protein YP_001388831.1 3160547 R 441771 CDS YP_001388832.1 153936102 5400169 complement(3161640..3163058) 1 NC_009698.1 hypothetical protein 3163058 5400169 CLC_3005 Clostridium botulinum A str. Hall hypothetical protein YP_001388832.1 3161640 R 441771 CDS YP_001388833.1 153937191 5398270 complement(3163073..3164167) 1 NC_009698.1 identified by match to protein family HMM PF00560; internalin 3164167 5398270 CLC_3006 Clostridium botulinum A str. Hall internalin YP_001388833.1 3163073 R 441771 CDS YP_001388834.1 153935170 5399489 complement(3164204..3165511) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; polysaccharide biosynthesis protein 3165511 5399489 CLC_3007 Clostridium botulinum A str. Hall polysaccharide biosynthesis protein YP_001388834.1 3164204 R 441771 CDS YP_001388835.1 153936094 5400921 complement(3165542..3166288) 1 NC_009698.1 identified by match to protein family HMM PF00132; acetyltransferase 3166288 5400921 CLC_3008 Clostridium botulinum A str. Hall acetyltransferase YP_001388835.1 3165542 R 441771 CDS YP_001388836.1 153936670 5400336 complement(3166388..3167497) 1 NC_009698.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding Rossmann fold family oxidoreductase 3167497 5400336 CLC_3009 Clostridium botulinum A str. Hall NAD-binding Rossmann fold family oxidoreductase YP_001388836.1 3166388 R 441771 CDS YP_001388837.1 153937645 5398973 complement(3167560..3168876) 1 NC_009698.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose/GDP-mannose dehydrogenase 3168876 5398973 CLC_3010 Clostridium botulinum A str. Hall UDP-glucose/GDP-mannose dehydrogenase YP_001388837.1 3167560 R 441771 CDS YP_001388838.1 153935280 5399771 complement(3169006..3170871) 1 NC_009698.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; exopolysaccharide biosynthesis protein 3170871 5399771 CLC_3011 Clostridium botulinum A str. Hall exopolysaccharide biosynthesis protein YP_001388838.1 3169006 R 441771 CDS YP_001388839.1 153936078 5401537 complement(3171052..3173943) 1 NC_009698.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495; N-acetylmuramoyl-L-alanine amidase 3173943 5401537 CLC_3012 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001388839.1 3171052 R 441771 CDS YP_001388840.1 153936707 5398457 complement(3174138..3177041) 1 NC_009698.1 identified by match to protein family HMM PF01520; match to protein family HMM PF07495; N-acetylmuramoyl-L-alanine amidase 3177041 5398457 CLC_3013 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001388840.1 3174138 R 441771 CDS YP_001388841.1 153937646 5400684 complement(3177110..3177244) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3177244 5400684 CLC_3014 Clostridium botulinum A str. Hall hypothetical protein YP_001388841.1 3177110 R 441771 CDS YP_001388842.1 153935676 5399021 complement(3177225..3180380) 1 NC_009698.1 identified by match to protein family HMM PF01832; match to protein family HMM PF07495; beta-N-acetylglucosaminidase 3180380 5399021 CLC_3015 Clostridium botulinum A str. Hall beta-N-acetylglucosaminidase YP_001388842.1 3177225 R 441771 CDS YP_001388843.1 153936051 5401538 complement(3180479..3181375) 1 NC_009698.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 3181375 galU 5401538 galU Clostridium botulinum A str. Hall UTP-glucose-1-phosphate uridylyltransferase YP_001388843.1 3180479 R 441771 CDS YP_001388844.1 153937282 5399218 complement(3181425..3182501) 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3182501 5399218 CLC_3017 Clostridium botulinum A str. Hall hypothetical protein YP_001388844.1 3181425 R 441771 CDS YP_001388845.1 153935099 5398656 complement(3182646..3184373) 1 NC_009698.1 identified by match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 3184373 5398656 CLC_3018 Clostridium botulinum A str. Hall phosphoglucomutase/phosphomannomutase YP_001388845.1 3182646 R 441771 CDS YP_001388846.1 153935360 5401113 complement(3185359..3185895) 1 NC_009698.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 3185895 5401113 CLC_3019 Clostridium botulinum A str. Hall 50S ribosomal protein L25 YP_001388846.1 3185359 R 441771 CDS YP_001388847.1 153936506 5399133 3186102..3187562 1 NC_009698.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711; match to protein family HMM PF05889; Orn/Lys/Arg decarboxylase 3187562 5399133 CLC_3020 Clostridium botulinum A str. Hall Orn/Lys/Arg decarboxylase YP_001388847.1 3186102 D 441771 CDS YP_001388848.1 153934680 5401468 complement(3187747..3188580) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3188580 5401468 CLC_3021 Clostridium botulinum A str. Hall hypothetical protein YP_001388848.1 3187747 R 441771 CDS YP_001388849.1 153935377 5398506 complement(3188778..3189680) 1 NC_009698.1 identified by match to protein family HMM PF01515; phosphate acetyl/butyryl transferase 3189680 5398506 CLC_3022 Clostridium botulinum A str. Hall phosphate acetyl/butyryl transferase YP_001388849.1 3188778 R 441771 CDS YP_001388850.1 153936151 5400022 complement(3190124..3191137) 1 NC_009698.1 identified by match to protein family HMM PF01070; dehydrogenase, FMN-dependent 3191137 5400022 CLC_3023 Clostridium botulinum A str. Hall dehydrogenase, FMN-dependent YP_001388850.1 3190124 R 441771 CDS YP_001388851.1 153936933 5400606 complement(3191373..3191843) 1 NC_009698.1 identified by match to protein family HMM PF04463; hypothetical protein 3191843 5400606 CLC_3024 Clostridium botulinum A str. Hall hypothetical protein YP_001388851.1 3191373 R 441771 CDS YP_001388852.1 153936995 5400960 complement(3192031..3194397) 1 NC_009698.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 3194397 5400960 CLC_3025 Clostridium botulinum A str. Hall recombination and DNA strand exchange inhibitor protein YP_001388852.1 3192031 R 441771 CDS YP_001388853.1 153937807 5401147 complement(3194530..3196896) 1 NC_009698.1 identified by match to protein family HMM PF01136; U32 family peptidase 3196896 5401147 CLC_3026 Clostridium botulinum A str. Hall U32 family peptidase YP_001388853.1 3194530 R 441771 CDS YP_001388854.1 153935767 5399724 complement(3197470..3198348) 1 NC_009698.1 hypothetical protein 3198348 5399724 CLC_3027 Clostridium botulinum A str. Hall hypothetical protein YP_001388854.1 3197470 R 441771 CDS YP_001388855.1 153935699 5399550 3198554..3200380 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3200380 5399550 CLC_3028 Clostridium botulinum A str. Hall hypothetical protein YP_001388855.1 3198554 D 441771 CDS YP_001388856.1 153937777 5399376 complement(3200551..3200703) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3200703 5399376 CLC_3029 Clostridium botulinum A str. Hall hypothetical protein YP_001388856.1 3200551 R 441771 CDS YP_001388857.1 153936884 5401205 complement(3200883..3201149) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3201149 5401205 CLC_3030 Clostridium botulinum A str. Hall hypothetical protein YP_001388857.1 3200883 R 441771 CDS YP_001388858.1 153934539 5399393 complement(3202000..3202590) 1 NC_009698.1 identified by match to protein family HMM PF05164; hypothetical protein 3202590 5399393 CLC_3032 Clostridium botulinum A str. Hall hypothetical protein YP_001388858.1 3202000 R 441771 CDS YP_001388859.1 153937460 5399746 complement(3202795..3205176) 1 NC_009698.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 3205176 pheT 5399746 pheT Clostridium botulinum A str. Hall phenylalanyl-tRNA synthetase subunit beta YP_001388859.1 3202795 R 441771 CDS YP_001388860.1 153936441 5398323 complement(3205337..3206356) 1 NC_009698.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 3206356 pheS 5398323 pheS Clostridium botulinum A str. Hall phenylalanyl-tRNA synthetase subunit alpha YP_001388860.1 3205337 R 441771 CDS YP_001388861.1 153936028 5398444 complement(3206704..3207483) 1 NC_009698.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 3207483 5398444 CLC_3035 Clostridium botulinum A str. Hall RNA methyltransferase YP_001388861.1 3206704 R 441771 CDS YP_001388862.1 153935089 5399978 complement(3207574..3208236) 1 NC_009698.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; TrkA family potassium uptake protein 3208236 5399978 CLC_3036 Clostridium botulinum A str. Hall TrkA family potassium uptake protein YP_001388862.1 3207574 R 441771 CDS YP_001388863.1 153936828 5400720 complement(3208247..3209590) 1 NC_009698.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933; TrkH family potassium uptake protein 3209590 5400720 CLC_3037 Clostridium botulinum A str. Hall TrkH family potassium uptake protein YP_001388863.1 3208247 R 441771 CDS YP_001388864.1 153937482 5399129 complement(3209714..3210073) 1 NC_009698.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3210073 rplT 5399129 rplT Clostridium botulinum A str. Hall 50S ribosomal protein L20 YP_001388864.1 3209714 R 441771 CDS YP_001388865.1 153937318 5399237 complement(3210103..3210300) 1 NC_009698.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 3210300 rpmI 5399237 rpmI Clostridium botulinum A str. Hall 50S ribosomal protein L35 YP_001388865.1 3210103 R 441771 CDS YP_001388866.1 153934650 5398943 complement(3210322..3210876) 1 NC_009698.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 3210876 infC 5398943 infC Clostridium botulinum A str. Hall translation initiation factor IF-3 YP_001388866.1 3210322 R 441771 CDS YP_001388867.1 153935084 5400035 complement(3211131..3213038) 1 NC_009698.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 3213038 thrS 5400035 thrS Clostridium botulinum A str. Hall threonyl-tRNA synthetase YP_001388867.1 3211131 R 441771 CDS YP_001388868.1 153937551 5400057 complement(3213386..3214285) 1 NC_009698.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834; hypothetical protein 3214285 5400057 CLC_3042 Clostridium botulinum A str. Hall hypothetical protein YP_001388868.1 3213386 R 441771 CDS YP_001388869.1 153935666 5400589 3214440..3215147 1 NC_009698.1 hypothetical protein 3215147 5400589 CLC_3043 Clostridium botulinum A str. Hall hypothetical protein YP_001388869.1 3214440 D 441771 CDS YP_001388870.1 153935090 5401724 complement(3215355..3216926) 1 NC_009698.1 ABC transporter permease 3216926 5401724 CLC_3044 Clostridium botulinum A str. Hall ABC transporter permease YP_001388870.1 3215355 R 441771 CDS YP_001388871.1 153934715 5400721 complement(3216928..3217623) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3217623 5400721 CLC_3045 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388871.1 3216928 R 441771 CDS YP_001388872.1 153936243 5399456 complement(3218530..3219420) 1 NC_009698.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 3219420 hslO 5399456 hslO Clostridium botulinum A str. Hall Hsp33-like chaperonin YP_001388872.1 3218530 R 441771 CDS YP_001388873.1 153934550 5398279 complement(3219458..3220198) 1 NC_009698.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 3220198 5398279 CLC_3054 Clostridium botulinum A str. Hall hypothetical protein YP_001388873.1 3219458 R 441771 CDS YP_001388874.1 153935227 5401491 complement(3220284..3220556) 1 NC_009698.1 small acid-soluble spore protein 3220556 5401491 CLC_3055 Clostridium botulinum A str. Hall small acid-soluble spore protein YP_001388874.1 3220284 R 441771 CDS YP_001388875.1 153937772 5398579 complement(3220855..3221814) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 3221814 5398579 CLC_3056 Clostridium botulinum A str. Hall oligopeptide/dipeptide ABC transporter ATP-binding protein YP_001388875.1 3220855 R 441771 CDS YP_001388876.1 153936786 5401684 complement(3221814..3222833) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 3222833 5401684 CLC_3057 Clostridium botulinum A str. Hall oligopeptide/dipeptide ABC transporter ATP-binding protein YP_001388876.1 3221814 R 441771 CDS YP_001388877.1 153937158 5398957 complement(3222847..3223764) 1 NC_009698.1 identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 3223764 5398957 CLC_3058 Clostridium botulinum A str. Hall oligopeptide/dipeptide ABC transporter permease YP_001388877.1 3222847 R 441771 CDS YP_001388878.1 153934657 5400676 complement(3223780..3224709) 1 NC_009698.1 identified by match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 3224709 5400676 CLC_3059 Clostridium botulinum A str. Hall oligopeptide/dipeptide ABC transporter permease YP_001388878.1 3223780 R 441771 CDS YP_001388879.1 153935619 5400801 complement(3224790..3226472) 1 NC_009698.1 identified by match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein 3226472 5400801 CLC_3060 Clostridium botulinum A str. Hall oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein YP_001388879.1 3224790 R 441771 CDS YP_001388880.1 153937470 5399265 3226957..3227949 1 NC_009698.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 3227949 asd 5399265 asd Clostridium botulinum A str. Hall aspartate-semialdehyde dehydrogenase YP_001388880.1 3226957 D 441771 CDS YP_001388881.1 153934913 5399068 3227972..3228850 1 NC_009698.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3228850 dapA 5399068 dapA Clostridium botulinum A str. Hall dihydrodipicolinate synthase YP_001388881.1 3227972 D 441771 CDS YP_001388882.1 153934891 5401532 3229073..3229828 1 NC_009698.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3229828 dapB-2 5401532 dapB-2 Clostridium botulinum A str. Hall dihydrodipicolinate reductase YP_001388882.1 3229073 D 441771 CDS YP_001388883.1 153935467 5400993 complement(3230368..3231537) 1 NC_009698.1 identified by match to protein family HMM PF00155; aminotransferase, classes I and II 3231537 5400993 CLC_3064 Clostridium botulinum A str. Hall aminotransferase, classes I and II YP_001388883.1 3230368 R 441771 CDS YP_001388884.1 153936442 5399412 3231795..3232505 1 NC_009698.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3232505 5399412 CLC_3065 Clostridium botulinum A str. Hall 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_001388884.1 3231795 D 441771 CDS YP_001388885.1 153935192 5398778 complement(3232621..3233322) 1 NC_009698.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 3233322 5398778 CLC_3066 Clostridium botulinum A str. Hall single-stranded DNA-binding protein YP_001388885.1 3232621 R 441771 CDS YP_001388886.1 153936152 5398289 complement(3233400..3233897) 1 NC_009698.1 hypothetical protein 3233897 5398289 CLC_3067 Clostridium botulinum A str. Hall hypothetical protein YP_001388886.1 3233400 R 441771 CDS YP_001388887.1 153936667 5400962 complement(3234096..3234848) 1 NC_009698.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764; polysaccharide deacetylase 3234848 5400962 CLC_3068 Clostridium botulinum A str. Hall polysaccharide deacetylase YP_001388887.1 3234096 R 441771 CDS YP_001388888.1 153937680 5399768 3235012..3235539 1 NC_009698.1 hypothetical protein 3235539 5399768 CLC_3069 Clostridium botulinum A str. Hall hypothetical protein YP_001388888.1 3235012 D 441771 CDS YP_001388889.1 153934716 5401626 complement(3235542..3236426) 1 NC_009698.1 hypothetical protein 3236426 5401626 CLC_3070 Clostridium botulinum A str. Hall hypothetical protein YP_001388889.1 3235542 R 441771 CDS YP_001388890.1 153935675 5399560 3236566..3236826 1 NC_009698.1 hypothetical protein 3236826 5399560 CLC_3071 Clostridium botulinum A str. Hall hypothetical protein YP_001388890.1 3236566 D 441771 CDS YP_001388891.1 153937356 5398566 complement(3236835..3238124) 1 NC_009698.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 3238124 folC 5398566 folC Clostridium botulinum A str. Hall bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001388891.1 3236835 R 441771 CDS YP_001388892.1 153935830 5400168 complement(3238570..3241215) 1 NC_009698.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3241215 valS 5400168 valS Clostridium botulinum A str. Hall valyl-tRNA synthetase YP_001388892.1 3238570 R 441771 CDS YP_001388893.1 153935038 5398537 complement(3241236..3241742) 1 NC_009698.1 identified by match to protein family HMM PF00583; acetyltransferase 3241742 5398537 CLC_3074 Clostridium botulinum A str. Hall acetyltransferase YP_001388893.1 3241236 R 441771 CDS YP_001388894.1 153937303 5401459 complement(3242196..3242951) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3242951 5401459 CLC_3075 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388894.1 3242196 R 441771 CDS YP_001388897.1 153936970 5401630 3245710..3246738 1 NC_009698.1 identified by match to protein family HMM PF09084; ABC transporter substrate-binding protein 3246738 5401630 CLC_3078 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001388897.1 3245710 D 441771 CDS YP_001388899.1 153935019 5399374 complement(3247099..3251391) 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 3251391 5399374 CLC_3080 Clostridium botulinum A str. Hall CoA-substrate-specific enzyme activase YP_001388899.1 3247099 R 441771 CDS YP_001388900.1 153934788 5399164 3251713..3252474 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3252474 5399164 CLC_3081 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388900.1 3251713 D 441771 CDS YP_001388901.1 153936956 5400041 3252471..3253274 1 NC_009698.1 identified by match to protein family HMM PF00528; ABC transporter permease 3253274 5400041 CLC_3082 Clostridium botulinum A str. Hall ABC transporter permease YP_001388901.1 3252471 D 441771 CDS YP_001388902.1 153937123 5400209 3253418..3253765 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720; hypothetical protein 3253765 5400209 CLC_3083 Clostridium botulinum A str. Hall hypothetical protein YP_001388902.1 3253418 D 441771 CDS YP_001388903.1 153936329 5399008 complement(3253888..3255063) 1 NC_009698.1 identified by match to protein family HMM PF01841; transglutaminase domain-containing protein 3255063 5399008 CLC_3084 Clostridium botulinum A str. Hall transglutaminase domain-containing protein YP_001388903.1 3253888 R 441771 CDS YP_001388904.1 153935983 5400707 complement(3255088..3256023) 1 NC_009698.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 3256023 recX 5400707 recX Clostridium botulinum A str. Hall recombination regulator RecX YP_001388904.1 3255088 R 441771 CDS YP_001388905.1 153935242 5400428 complement(3256045..3257274) 1 NC_009698.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 3257274 5400428 CLC_3086 Clostridium botulinum A str. Hall M16 family peptidase YP_001388905.1 3256045 R 441771 CDS YP_001388906.1 153937480 5399850 3257495..3257998 1 NC_009698.1 identified by match to protein family HMM PF06177; hypothetical protein 3257998 5399850 CLC_3087 Clostridium botulinum A str. Hall hypothetical protein YP_001388906.1 3257495 D 441771 CDS YP_001388907.1 153936772 5399235 3258036..3258623 1 NC_009698.1 identified by match to protein family HMM PF01613; flavin reductase 3258623 5399235 CLC_3088 Clostridium botulinum A str. Hall flavin reductase YP_001388907.1 3258036 D 441771 CDS YP_001388908.1 153934739 5399913 3258680..3259375 1 NC_009698.1 identified by match to protein family HMM PF01471; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 3259375 5399913 CLC_3089 Clostridium botulinum A str. Hall ErfK/YbiS/YcfS/YnhG family protein YP_001388908.1 3258680 D 441771 CDS YP_001388909.1 153937409 5399534 complement(3259410..3260285) 1 NC_009698.1 hypothetical protein 3260285 5399534 CLC_3090 Clostridium botulinum A str. Hall hypothetical protein YP_001388909.1 3259410 R 441771 CDS YP_001388910.1 153934520 5401127 complement(3260327..3260605) 1 NC_009698.1 identified by match to protein family HMM PF06865; hypothetical protein 3260605 5401127 CLC_3091 Clostridium botulinum A str. Hall hypothetical protein YP_001388910.1 3260327 R 441771 CDS YP_001388911.1 153937223 5400629 complement(3260733..3261539) 1 NC_009698.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 3261539 proC 5400629 proC Clostridium botulinum A str. Hall pyrroline-5-carboxylate reductase YP_001388911.1 3260733 R 441771 CDS YP_001388912.1 153935644 5401438 complement(3261651..3264014) 1 NC_009698.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; formate acetyltransferase 3264014 5401438 CLC_3093 Clostridium botulinum A str. Hall formate acetyltransferase YP_001388912.1 3261651 R 441771 CDS YP_001388913.1 153934810 5400247 complement(3264021..3264923) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; match to protein family HMM TIGR02494; glycyl-radical enzyme activating family protein 3264923 5400247 CLC_3094 Clostridium botulinum A str. Hall glycyl-radical enzyme activating family protein YP_001388913.1 3264021 R 441771 CDS YP_001388914.1 153937138 5400464 complement(3264987..3265556) 1 NC_009698.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 3265556 5400464 CLC_3095 Clostridium botulinum A str. Hall DNA-binding protein YP_001388914.1 3264987 R 441771 CDS YP_001388915.1 153936307 5400896 complement(3266191..3266919) 1 NC_009698.1 identified by match to protein family HMM PF00533; hypothetical protein 3266919 5400896 CLC_3096 Clostridium botulinum A str. Hall hypothetical protein YP_001388915.1 3266191 R 441771 CDS YP_001388916.1 153936016 5400199 complement(3266956..3267297) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3267297 5400199 CLC_3097 Clostridium botulinum A str. Hall hypothetical protein YP_001388916.1 3266956 R 441771 CDS YP_001388917.1 153935295 5400578 complement(3267309..3269045) 1 NC_009698.1 identified by match to protein family HMM PF00092; von Willebrand factor A 3269045 5400578 CLC_3098 Clostridium botulinum A str. Hall von Willebrand factor A YP_001388917.1 3267309 R 441771 CDS YP_001388918.1 153937542 5398846 complement(3269068..3270396) 1 NC_009698.1 identified by match to protein family HMM PF07728; ATPase AAA 3270396 5398846 CLC_3099 Clostridium botulinum A str. Hall ATPase AAA YP_001388918.1 3269068 R 441771 CDS YP_001388919.1 153936814 5401819 3271019..3272095 1 NC_009698.1 hypothetical protein 3272095 5401819 CLC_3100 Clostridium botulinum A str. Hall hypothetical protein YP_001388919.1 3271019 D 441771 CDS YP_001388920.1 153934613 5401215 3272164..3273249 1 NC_009698.1 hypothetical protein 3273249 5401215 CLC_3101 Clostridium botulinum A str. Hall hypothetical protein YP_001388920.1 3272164 D 441771 CDS YP_001388921.1 153935336 5398479 complement(3273428..3273622) 1 NC_009698.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 3273622 5398479 CLC_3102 Clostridium botulinum A str. Hall (Fe-S)-binding protein YP_001388921.1 3273428 R 441771 CDS YP_001388922.1 153935015 5399322 3273865..3274758 1 NC_009698.1 hypothetical protein 3274758 5399322 CLC_3103 Clostridium botulinum A str. Hall hypothetical protein YP_001388922.1 3273865 D 441771 CDS YP_001388923.1 153937712 5400949 3274761..3275858 1 NC_009698.1 R-2-hydroxyglutaryl-CoA dehydratase subunit 3275858 5400949 CLC_3104 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit YP_001388923.1 3274761 D 441771 CDS YP_001388924.1 153935642 5401582 3275839..3276813 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 3276813 5401582 CLC_3105 Clostridium botulinum A str. Hall CoA-substrate-specific enzyme activase YP_001388924.1 3275839 D 441771 CDS YP_001388925.1 153934895 5400245 complement(3276882..3278510) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator 3278510 5400245 CLC_3106 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001388925.1 3276882 R 441771 CDS YP_001388926.1 153937149 5400997 complement(3278868..3279875) 1 NC_009698.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 3279875 5400997 CLC_3107 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit alpha/FixB family protein YP_001388926.1 3278868 R 441771 CDS YP_001388927.1 153936298 5399878 complement(3279888..3280667) 1 NC_009698.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 3280667 5399878 CLC_3108 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit beta/FixA family protein YP_001388927.1 3279888 R 441771 CDS YP_001388928.1 153936132 5399707 complement(3280679..3281818) 1 NC_009698.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 3281818 bcd 5399707 bcd Clostridium botulinum A str. Hall butyryl-CoA dehydrogenase YP_001388928.1 3280679 R 441771 CDS YP_001388929.1 153935037 5398355 complement(3282012..3283190) 1 NC_009698.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3283190 5398355 CLC_3110 Clostridium botulinum A str. Hall acetyl-CoA acetyltransferase YP_001388929.1 3282012 R 441771 CDS YP_001388930.1 153937574 5401458 complement(3283215..3284045) 1 NC_009698.1 identified by match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase 3284045 hbd 5401458 hbd Clostridium botulinum A str. Hall 3-hydroxybutyryl-CoA dehydrogenase YP_001388930.1 3283215 R 441771 CDS YP_001388931.1 153935742 5399807 complement(3284076..3284858) 1 NC_009698.1 identified by match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase 3284858 crt 5399807 crt Clostridium botulinum A str. Hall 3-hydroxybutyryl-CoA dehydratase YP_001388931.1 3284076 R 441771 CDS YP_001388932.1 153936793 5399824 complement(3285274..3285492) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3285492 5399824 CLC_3113 Clostridium botulinum A str. Hall hypothetical protein YP_001388932.1 3285274 R 441771 CDS YP_001388933.1 153936066 5401031 complement(3285536..3286633) 1 NC_009698.1 identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein 3286633 5401031 CLC_3114 Clostridium botulinum A str. Hall GIY-YIG domain-containing protein YP_001388933.1 3285536 R 441771 CDS YP_001388934.1 153934831 5398498 complement(3286909..3288201) 1 NC_009698.1 identified by match to protein family HMM PF00860; xanthine/uracil permease 3288201 5398498 CLC_3115 Clostridium botulinum A str. Hall xanthine/uracil permease YP_001388934.1 3286909 R 441771 CDS YP_001388935.1 153937532 5401614 complement(3288603..3289499) 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 3289499 5401614 CLC_3116 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001388935.1 3288603 R 441771 CDS YP_001388936.1 153935057 5398307 complement(3289567..3289719) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3289719 5398307 CLC_3117 Clostridium botulinum A str. Hall hypothetical protein YP_001388936.1 3289567 R 441771 CDS YP_001388937.1 153935910 5399869 complement(3289884..3290003) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3290003 5399869 CLC_3118 Clostridium botulinum A str. Hall hypothetical protein YP_001388937.1 3289884 R 441771 CDS YP_001388938.1 153935381 5399352 complement(3290105..3290869) 1 NC_009698.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3290869 lgt 5399352 lgt Clostridium botulinum A str. Hall prolipoprotein diacylglyceryl transferase YP_001388938.1 3290105 R 441771 CDS YP_001388939.1 153937846 5400610 complement(3291078..3291542) 1 NC_009698.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 3291542 5400610 CLC_3120 Clostridium botulinum A str. Hall phosphodiesterase YP_001388939.1 3291078 R 441771 CDS YP_001388940.1 153934681 5399194 complement(3291585..3291950) 1 NC_009698.1 hypothetical protein 3291950 5399194 CLC_3121 Clostridium botulinum A str. Hall hypothetical protein YP_001388940.1 3291585 R 441771 CDS YP_001388941.1 153935403 5400023 3292081..3292836 1 NC_009698.1 identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 3292836 5400023 CLC_3122 Clostridium botulinum A str. Hall glycerophosphoryl diester phosphodiesterase YP_001388941.1 3292081 D 441771 CDS YP_001388942.1 153935540 5401395 complement(3292932..3294938) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 3294938 5401395 CLC_3123 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001388942.1 3292932 R 441771 CDS YP_001388943.1 153936270 5398438 complement(3295133..3295678) 1 NC_009698.1 identified by match to protein family HMM PF00301; match to protein family HMM PF02915; rubredoxin/rubrerythrin 3295678 5398438 CLC_3124 Clostridium botulinum A str. Hall rubredoxin/rubrerythrin YP_001388943.1 3295133 R 441771 CDS YP_001388944.1 153935264 5400820 complement(3296320..3297018) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493; pyruvate formate-lyase activating enzyme 3297018 pflA 5400820 pflA Clostridium botulinum A str. Hall pyruvate formate-lyase activating enzyme YP_001388944.1 3296320 R 441771 CDS YP_001388945.1 153936050 5401090 complement(3297198..3299426) 1 NC_009698.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255; formate acetyltransferase 1 3299426 pfl 5401090 pfl Clostridium botulinum A str. Hall formate acetyltransferase 1 YP_001388945.1 3297198 R 441771 CDS YP_001388946.1 153936852 5398655 complement(3299938..3300189) 1 NC_009698.1 hypothetical protein 3300189 5398655 CLC_3127 Clostridium botulinum A str. Hall hypothetical protein YP_001388946.1 3299938 R 441771 CDS YP_001388947.1 153937600 5400939 complement(3300617..3301186) 1 NC_009698.1 identified by match to protein family HMM PF01386; match to protein family HMM TIGR00731; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 3301186 5400939 CLC_3128 Clostridium botulinum A str. Hall ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001388947.1 3300617 R 441771 CDS YP_001388948.1 153934942 5399313 complement(3301353..3301967) 1 NC_009698.1 lipoprotein 3301967 5399313 CLC_3129 Clostridium botulinum A str. Hall lipoprotein YP_001388948.1 3301353 R 441771 CDS YP_001388949.1 153935590 5400466 3302193..3302621 1 NC_009698.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 3302621 5400466 CLC_3130 Clostridium botulinum A str. Hall FUR family transcriptional regulator YP_001388949.1 3302193 D 441771 CDS YP_001388950.1 153937714 5398401 complement(3302690..3303925) 1 NC_009698.1 identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein 3303925 5398401 CLC_3131 Clostridium botulinum A str. Hall ABC transporter substrate-binding protein YP_001388950.1 3302690 R 441771 CDS YP_001388951.1 153936980 5400391 3304026..3304961 1 NC_009698.1 hypothetical protein 3304961 5400391 CLC_3132 Clostridium botulinum A str. Hall hypothetical protein YP_001388951.1 3304026 D 441771 CDS YP_001388952.1 153936641 5400505 complement(3305121..3306077) 1 NC_009698.1 identified by match to protein family HMM PF08279; hypothetical protein 3306077 5400505 CLC_3133 Clostridium botulinum A str. Hall hypothetical protein YP_001388952.1 3305121 R 441771 CDS YP_001388953.1 153935633 5401167 complement(3306292..3306702) 1 NC_009698.1 hypothetical protein 3306702 5401167 CLC_3134 Clostridium botulinum A str. Hall hypothetical protein YP_001388953.1 3306292 R 441771 CDS YP_001388954.1 153934684 5398512 complement(3306757..3307002) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3307002 5398512 CLC_3135 Clostridium botulinum A str. Hall hypothetical protein YP_001388954.1 3306757 R 441771 CDS YP_001388955.1 153937230 5400517 complement(3307054..3307482) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3307482 5400517 CLC_3136 Clostridium botulinum A str. Hall hypothetical protein YP_001388955.1 3307054 R 441771 CDS YP_001388956.1 153936209 5400026 complement(3307701..3308426) 1 NC_009698.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 3308426 5400026 CLC_3137 Clostridium botulinum A str. Hall CAAX amino terminal protease YP_001388956.1 3307701 R 441771 CDS YP_001388957.1 153935229 5400546 complement(3308450..3309034) 1 NC_009698.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 3309034 engB 5400546 engB Clostridium botulinum A str. Hall ribosome biogenesis GTP-binding protein YsxC YP_001388957.1 3308450 R 441771 CDS YP_001388958.1 153937677 5398804 complement(3309049..3311370) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 3311370 lon 5398804 lon Clostridium botulinum A str. Hall ATP-dependent protease La YP_001388958.1 3309049 R 441771 CDS YP_001388959.1 153936700 5398581 complement(3311508..3313187) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902; ATP-dependent protease LonB 3313187 lonB 5398581 lonB Clostridium botulinum A str. Hall ATP-dependent protease LonB YP_001388959.1 3311508 R 441771 CDS YP_001388960.1 153935476 5400033 complement(3313315..3314604) 1 NC_009698.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 3314604 clpX 5400033 clpX Clostridium botulinum A str. Hall ATP-dependent protease ATP-binding subunit ClpX YP_001388960.1 3313315 R 441771 CDS YP_001388961.1 153934525 5400447 complement(3314624..3315208) 1 NC_009698.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3315208 clpP 5400447 clpP Clostridium botulinum A str. Hall ATP-dependent Clp protease proteolytic subunit YP_001388961.1 3314624 R 441771 CDS YP_001388962.1 153936080 5400318 complement(3315334..3316626) 1 NC_009698.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 3316626 tig 5400318 tig Clostridium botulinum A str. Hall trigger factor YP_001388962.1 3315334 R 441771 CDS YP_001388963.1 153935132 5399751 complement(3316804..3317589) 1 NC_009698.1 identified by match to protein family HMM PF01261; AP endonuclease 3317589 5399751 CLC_3144 Clostridium botulinum A str. Hall AP endonuclease YP_001388963.1 3316804 R 441771 CDS YP_001388964.1 153934694 5400210 complement(3317696..3318508) 1 NC_009698.1 hypothetical protein 3318508 5400210 CLC_3145 Clostridium botulinum A str. Hall hypothetical protein YP_001388964.1 3317696 R 441771 CDS YP_001388965.1 153937172 5398317 complement(3318722..3319297) 1 NC_009698.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 3319297 pyrE 5398317 pyrE Clostridium botulinum A str. Hall orotate phosphoribosyltransferase YP_001388965.1 3318722 R 441771 CDS YP_001388966.1 153936654 5399787 complement(3319331..3320227) 1 NC_009698.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 3320227 pyrD 5399787 pyrD Clostridium botulinum A str. Hall dihydroorotate dehydrogenase 1B YP_001388966.1 3319331 R 441771 CDS YP_001388967.1 153937641 5400082 complement(3320227..3320982) 1 NC_009698.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 3320982 pyrK 5400082 pyrK Clostridium botulinum A str. Hall dihydroorotate dehydrogenase electron transfer subunit YP_001388967.1 3320227 R 441771 CDS YP_001388968.1 153937661 5400068 complement(3321127..3321978) 1 NC_009698.1 type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 3321978 pyrF 5400068 pyrF Clostridium botulinum A str. Hall orotidine 5'-phosphate decarboxylase YP_001388968.1 3321127 R 441771 CDS YP_001388969.1 153936661 5401636 complement(3322002..3323192) 1 NC_009698.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase, multifunctional complex type 3323192 pyrC 5401636 pyrC Clostridium botulinum A str. Hall dihydroorotase, multifunctional complex type YP_001388969.1 3322002 R 441771 CDS YP_001388970.1 153935188 5401656 complement(3323214..3323654) 1 NC_009698.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 3323654 pyrI 5401656 pyrI Clostridium botulinum A str. Hall aspartate carbamoyltransferase YP_001388970.1 3323214 R 441771 CDS YP_001388971.1 153937659 5401789 complement(3323656..3324579) 1 NC_009698.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 3324579 pyrB 5401789 pyrB Clostridium botulinum A str. Hall aspartate carbamoyltransferase YP_001388971.1 3323656 R 441771 CDS YP_001388972.1 153937219 5399955 complement(3324834..3325592) 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 3325592 5399955 CLC_3153 Clostridium botulinum A str. Hall CoA-substrate-specific enzyme activase YP_001388972.1 3324834 R 441771 CDS YP_001388973.1 153934515 5401654 complement(3325615..3325812) 1 NC_009698.1 hypothetical protein 3325812 5401654 CLC_3154 Clostridium botulinum A str. Hall hypothetical protein YP_001388973.1 3325615 R 441771 CDS YP_001388974.1 153935922 5399407 complement(3326172..3327431) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit 3327431 5399407 CLC_3155 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit YP_001388974.1 3326172 R 441771 CDS YP_001388975.1 153936857 5401261 complement(3327560..3328708) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit 3328708 5401261 CLC_3156 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit YP_001388975.1 3327560 R 441771 CDS YP_001388976.1 153934802 5399935 complement(3328820..3329152) 1 NC_009698.1 hypothetical protein 3329152 5399935 CLC_3157 Clostridium botulinum A str. Hall hypothetical protein YP_001388976.1 3328820 R 441771 CDS YP_001388977.1 153934911 5401555 complement(3329189..3329947) 1 NC_009698.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3329947 5401555 CLC_3158 Clostridium botulinum A str. Hall ABC transporter ATP-binding protein YP_001388977.1 3329189 R 441771 CDS YP_001388978.1 153935107 5401530 complement(3330714..3331250) 1 NC_009698.1 identified by similarity to GB:CAJ69248.1; hypothetical protein 3331250 5401530 CLC_3160 Clostridium botulinum A str. Hall hypothetical protein YP_001388978.1 3330714 R 441771 CDS YP_001388979.1 153935341 5400634 complement(3331302..3331520) 1 NC_009698.1 identified by similarity to GB:CAJ69249.1; hypothetical protein 3331520 5400634 CLC_3161 Clostridium botulinum A str. Hall hypothetical protein YP_001388979.1 3331302 R 441771 CDS YP_001388981.1 153934516 5399781 complement(3331676..3332242) 1 NC_009698.1 hypothetical protein 3332242 5399781 CLC_3163 Clostridium botulinum A str. Hall hypothetical protein YP_001388981.1 3331676 R 441771 CDS YP_001388982.1 153937858 5399413 complement(3332270..3333370) 1 NC_009698.1 lipoprotein 3333370 5399413 CLC_3164 Clostridium botulinum A str. Hall lipoprotein YP_001388982.1 3332270 R 441771 CDS YP_001388983.1 153936904 5401262 complement(3333388..3333852) 1 NC_009698.1 lipoprotein 3333852 5401262 CLC_3165 Clostridium botulinum A str. Hall lipoprotein YP_001388983.1 3333388 R 441771 CDS YP_001388984.1 153935182 5401520 complement(3333868..3334959) 1 NC_009698.1 identified by match to protein family HMM PF03773; permease 3334959 5401520 CLC_3166 Clostridium botulinum A str. Hall permease YP_001388984.1 3333868 R 441771 CDS YP_001388985.1 153937681 5399077 complement(3334959..3335219) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3335219 5399077 CLC_3167 Clostridium botulinum A str. Hall hypothetical protein YP_001388985.1 3334959 R 441771 CDS YP_001388986.1 153937412 5399346 complement(3337777..3338247) 1 NC_009698.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 3338247 5399346 CLC_3203 Clostridium botulinum A str. Hall phosphodiesterase YP_001388986.1 3337777 R 441771 CDS YP_001388987.1 153936447 5401319 complement(3338264..3338863) 1 NC_009698.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 3338863 5401319 CLC_3204 Clostridium botulinum A str. Hall deoxyribonucleotide triphosphate pyrophosphatase YP_001388987.1 3338264 R 441771 CDS YP_001388988.1 153936296 5401454 3338967..3340340 1 NC_009698.1 hypothetical protein 3340340 5401454 CLC_3205 Clostridium botulinum A str. Hall hypothetical protein YP_001388988.1 3338967 D 441771 CDS YP_001388989.1 153935342 5399705 3340453..3340608 1 NC_009698.1 identified by similarity to GB:AAM23887.1; hypothetical protein 3340608 5399705 CLC_3206 Clostridium botulinum A str. Hall hypothetical protein YP_001388989.1 3340453 D 441771 CDS YP_001388990.1 153937767 5399782 complement(3340611..3342173) 1 NC_009698.1 identified by match to protein family HMM PF00496; solute-binding family 5 protein 3342173 5399782 CLC_3207 Clostridium botulinum A str. Hall solute-binding family 5 protein YP_001388990.1 3340611 R 441771 CDS YP_001388991.1 153935297 5401579 complement(3342327..3343757) 1 NC_009698.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3343757 gatB 5401579 gatB Clostridium botulinum A str. Hall aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001388991.1 3342327 R 441771 CDS YP_001388992.1 153936208 5398848 complement(3343793..3345250) 1 NC_009698.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3345250 gatA 5398848 gatA Clostridium botulinum A str. Hall aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001388992.1 3343793 R 441771 CDS YP_001388993.1 153936185 5398803 complement(3345287..3345574) 1 NC_009698.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 3345574 gatC 5398803 gatC Clostridium botulinum A str. Hall aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001388993.1 3345287 R 441771 CDS YP_001388994.1 153937344 5399472 complement(3345709..3346920) 1 NC_009698.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 3346920 5399472 CLC_3211 Clostridium botulinum A str. Hall sodium:dicarboxylate symporter family protein YP_001388994.1 3345709 R 441771 CDS YP_001388995.1 153934864 5399675 complement(3347217..3347486) 1 NC_009698.1 hypothetical protein 3347486 5399675 CLC_3212 Clostridium botulinum A str. Hall hypothetical protein YP_001388995.1 3347217 R 441771 CDS YP_001388996.1 153935840 5399526 complement(3347587..3349581) 1 NC_009698.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 3349581 ligA 5399526 ligA Clostridium botulinum A str. Hall NAD-dependent DNA ligase LigA YP_001388996.1 3347587 R 441771 CDS YP_001388997.1 153936248 5400788 complement(3349593..3351809) 1 NC_009698.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 3351809 pcrA 5400788 pcrA Clostridium botulinum A str. Hall ATP-dependent DNA helicase PcrA YP_001388997.1 3349593 R 441771 CDS YP_001388998.1 153936911 5399117 complement(3351936..3352235) 1 NC_009698.1 identified by match to protein family HMM PF01371; match to protein family HMM TIGR02531; TrpR family protein 3352235 5399117 CLC_3215 Clostridium botulinum A str. Hall TrpR family protein YP_001388998.1 3351936 R 441771 CDS YP_001388999.1 153934698 5400097 complement(3352533..3353249) 1 NC_009698.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase 3353249 5400097 CLC_3216 Clostridium botulinum A str. Hall RNA pseudouridine synthase YP_001388999.1 3352533 R 441771 CDS YP_001389000.1 153934944 5401175 complement(3353333..3354049) 1 NC_009698.1 identified by match to protein family HMM PF01464; Slt family transglycosylase 3354049 5401175 CLC_3217 Clostridium botulinum A str. Hall Slt family transglycosylase YP_001389000.1 3353333 R 441771 CDS YP_001389001.1 153934837 5398403 complement(3354063..3356066) 1 NC_009698.1 identified by match to protein family HMM PF07495; triple tyrosine motif-containing protein 3356066 5398403 CLC_3218 Clostridium botulinum A str. Hall triple tyrosine motif-containing protein YP_001389001.1 3354063 R 441771 CDS YP_001389002.1 153935553 5398749 3356200..3356367 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3356367 5398749 CLC_3219 Clostridium botulinum A str. Hall hypothetical protein YP_001389002.1 3356200 D 441771 CDS YP_001389003.1 153937275 5399416 complement(3356531..3356965) 1 NC_009698.1 identified by match to protein family HMM PF02639; hypothetical protein 3356965 5399416 CLC_3220 Clostridium botulinum A str. Hall hypothetical protein YP_001389003.1 3356531 R 441771 CDS YP_001389004.1 153936549 5400435 complement(3356976..3358328) 1 NC_009698.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3358328 pgi 5400435 pgi Clostridium botulinum A str. Hall glucose-6-phosphate isomerase YP_001389004.1 3356976 R 441771 CDS YP_001389005.1 153934950 5400322 complement(3358412..3358582) 1 NC_009698.1 hypothetical protein 3358582 5400322 CLC_3222 Clostridium botulinum A str. Hall hypothetical protein YP_001389005.1 3358412 R 441771 CDS YP_001389006.1 153937662 5401739 complement(3358891..3359535) 1 NC_009698.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3359535 5401739 CLC_3223 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001389006.1 3358891 R 441771 CDS YP_001389007.1 153936500 5401136 3360843..3361847 1 NC_009698.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 3361847 ldhA-1 5401136 ldhA-1 Clostridium botulinum A str. Hall D-lactate dehydrogenase YP_001389007.1 3360843 D 441771 CDS YP_001389008.1 153937113 5399042 complement(3362034..3363029) 1 NC_009698.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-lactate dehydrogenase 3363029 ldhA-2 5399042 ldhA-2 Clostridium botulinum A str. Hall D-lactate dehydrogenase YP_001389008.1 3362034 R 441771 CDS YP_001389009.1 153937489 5400111 complement(3363843..3365021) 1 NC_009698.1 hypothetical protein 3365021 5400111 CLC_3227 Clostridium botulinum A str. Hall hypothetical protein YP_001389009.1 3363843 R 441771 CDS YP_001389010.1 153936895 5399871 complement(3365239..3366435) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha/FixB family protein 3366435 5399871 CLC_3228 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit alpha/FixB family protein YP_001389010.1 3365239 R 441771 CDS YP_001389011.1 153935977 5400129 complement(3366453..3367247) 1 NC_009698.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta/FixA family protein 3367247 5400129 CLC_3229 Clostridium botulinum A str. Hall electron transfer flavoprotein subunit beta/FixA family protein YP_001389011.1 3366453 R 441771 CDS YP_001389012.1 153935189 5401512 complement(3367260..3368393) 1 NC_009698.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 3368393 5401512 CLC_3230 Clostridium botulinum A str. Hall acyl-CoA dehydrogenase YP_001389012.1 3367260 R 441771 CDS YP_001389013.1 153937627 5399956 complement(3368560..3369684) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-phenyllactate dehydratase subunit C 3369684 fldC 5399956 fldC Clostridium botulinum A str. Hall R-phenyllactate dehydratase subunit C YP_001389013.1 3368560 R 441771 CDS YP_001389014.1 153936470 5398534 complement(3369686..3370909) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-phenyllactate dehydratase subunit B 3370909 fldB 5398534 fldB Clostridium botulinum A str. Hall R-phenyllactate dehydratase subunit B YP_001389014.1 3369686 R 441771 CDS YP_001389015.1 153935573 5398931 complement(3370914..3371708) 1 NC_009698.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; R-phenyllactate dehydratase activator 3371708 fldI 5398931 fldI Clostridium botulinum A str. Hall R-phenyllactate dehydratase activator YP_001389015.1 3370914 R 441771 CDS YP_001389016.1 153934649 5398913 complement(3371708..3372946) 1 NC_009698.1 identified by match to protein family HMM PF02515; E-cinnamoyl-CoA:R-phenyllactate CoA transferase 3372946 fldA 5398913 fldA Clostridium botulinum A str. Hall E-cinnamoyl-CoA:R-phenyllactate CoA transferase YP_001389016.1 3371708 R 441771 CDS YP_001389017.1 153937136 5399098 complement(3373000..3374631) 1 NC_009698.1 identified by match to protein family HMM PF00501; AMP-binding protein 3374631 5399098 CLC_3235 Clostridium botulinum A str. Hall AMP-binding protein YP_001389017.1 3373000 R 441771 CDS YP_001389018.1 153935354 5398529 complement(3375097..3376419) 1 NC_009698.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796; branched-chain amino acid transport system II carrier protein 3376419 5398529 CLC_3236 Clostridium botulinum A str. Hall branched-chain amino acid transport system II carrier protein YP_001389018.1 3375097 R 441771 CDS YP_001389019.1 153935009 5400183 complement(3376878..3378410) 1 NC_009698.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3378410 guaA 5400183 guaA Clostridium botulinum A str. Hall GMP synthase YP_001389019.1 3376878 R 441771 CDS YP_001389020.1 153937299 5398670 complement(3378423..3379877) 1 NC_009698.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 3379877 guaB 5398670 guaB Clostridium botulinum A str. Hall inosine 5'-monophosphate dehydrogenase YP_001389020.1 3378423 R 441771 CDS YP_001389021.1 153937030 5401368 3380317..3381066 1 NC_009698.1 identified by match to protein family HMM PF01171; PP-loop family protein 3381066 5401368 CLC_3239 Clostridium botulinum A str. Hall PP-loop family protein YP_001389021.1 3380317 D 441771 CDS YP_001389022.1 153935823 5399090 complement(3381145..3382770) 1 NC_009698.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 3382770 groEL 5399090 groEL Clostridium botulinum A str. Hall molecular chaperone GroEL YP_001389022.1 3381145 R 441771 CDS YP_001389023.1 153935387 5400312 complement(3382800..3383087) 1 NC_009698.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 3383087 groES 5400312 groES Clostridium botulinum A str. Hall co-chaperonin GroES YP_001389023.1 3382800 R 441771 CDS YP_001389024.1 153934762 5398547 3383403..3384047 1 NC_009698.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906; hypothetical protein 3384047 5398547 CLC_3243 Clostridium botulinum A str. Hall hypothetical protein YP_001389024.1 3383403 D 441771 CDS YP_001389025.1 153934651 5399366 complement(3384042..3384776) 1 NC_009698.1 identified by match to protein family HMM PF09335; hypothetical protein 3384776 5399366 CLC_3242 Clostridium botulinum A str. Hall hypothetical protein YP_001389025.1 3384042 R 441771 CDS YP_001389026.1 153936790 5400036 complement(3385229..3386722) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 3386722 5400036 CLC_3244 Clostridium botulinum A str. Hall [Fe] hydrogenase YP_001389026.1 3385229 R 441771 CDS YP_001389027.1 153936532 5401028 complement(3386895..3387812) 1 NC_009698.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934; 8-oxoguanine DNA glycosylase 3387812 5401028 CLC_3245 Clostridium botulinum A str. Hall 8-oxoguanine DNA glycosylase YP_001389027.1 3386895 R 441771 CDS YP_001389028.1 153934928 5400671 complement(3387962..3389347) 1 NC_009698.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 3389347 gltA-2 5400671 gltA-2 Clostridium botulinum A str. Hall oxidoreductase YP_001389028.1 3387962 R 441771 CDS YP_001389029.1 153936347 5398673 complement(3389347..3390237) 1 NC_009698.1 identified by match to protein family HMM PF00175; ferredoxin-NADP reductase 3390237 5398673 CLC_3247 Clostridium botulinum A str. Hall ferredoxin-NADP reductase YP_001389029.1 3389347 R 441771 CDS YP_001389030.1 153936855 5399649 complement(3390468..3391100) 1 NC_009698.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 3391100 5399649 CLC_3248 Clostridium botulinum A str. Hall redox-sensing transcriptional repressor Rex YP_001389030.1 3390468 R 441771 CDS YP_001389031.1 153935736 5400942 3391300..3393222 1 NC_009698.1 identified by match to protein family HMM PF00005; drug resistance ABC transporter ATP-binding protein 3393222 5400942 CLC_3249 Clostridium botulinum A str. Hall drug resistance ABC transporter ATP-binding protein YP_001389031.1 3391300 D 441771 CDS YP_001389032.1 153934634 5398856 complement(3393563..3394327) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397; LytTr family DNA-binding response regulator 3394327 5398856 CLC_3250 Clostridium botulinum A str. Hall LytTr family DNA-binding response regulator YP_001389032.1 3393563 R 441771 CDS YP_001389033.1 153937267 5399548 complement(3394328..3395962) 1 NC_009698.1 identified by match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 3395962 5399548 CLC_3251 Clostridium botulinum A str. Hall sensor histidine kinase YP_001389033.1 3394328 R 441771 CDS YP_001389034.1 153936598 5400438 3396205..3397623 1 NC_009698.1 identified by match to protein family HMM PF02554; carbon starvation protein CstA 3397623 cstA 5400438 cstA Clostridium botulinum A str. Hall carbon starvation protein CstA YP_001389034.1 3396205 D 441771 CDS YP_001389035.1 153935519 5400352 complement(3397674..3400601) 1 NC_009698.1 identified by match to protein family HMM PF05193; match to protein family HMM PF08367; peptidase 3400601 5400352 CLC_3253 Clostridium botulinum A str. Hall peptidase YP_001389035.1 3397674 R 441771 CDS YP_001389036.1 153934619 5401462 complement(3400982..3404416) 1 NC_009698.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3404416 pyc 5401462 pyc Clostridium botulinum A str. Hall pyruvate carboxylase YP_001389036.1 3400982 R 441771 CDS YP_001389037.1 153937258 5398843 complement(3404876..3405898) 1 NC_009698.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 3405898 5398843 CLC_3255 Clostridium botulinum A str. Hall DNA-binding/iron metalloprotein/AP endonuclease YP_001389037.1 3404876 R 441771 CDS YP_001389038.1 153935629 5399505 3406122..3406745 1 NC_009698.1 identified by match to protein family HMM PF05866; endodeoxyribonuclease RusA 3406745 5399505 CLC_3256 Clostridium botulinum A str. Hall endodeoxyribonuclease RusA YP_001389038.1 3406122 D 441771 CDS YP_001389040.1 153937114 5401084 complement(3407122..3408378) 1 NC_009698.1 identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 3408378 5401084 CLC_3258 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001389040.1 3407122 R 441771 CDS YP_001389041.1 153936818 5400448 complement(3408746..3409132) 1 NC_009698.1 hypothetical protein 3409132 5400448 CLC_3261 Clostridium botulinum A str. Hall hypothetical protein YP_001389041.1 3408746 R 441771 CDS YP_001389042.1 153937771 5401219 complement(3409195..3410085) 1 NC_009698.1 hypothetical protein 3410085 5401219 CLC_3262 Clostridium botulinum A str. Hall hypothetical protein YP_001389042.1 3409195 R 441771 CDS YP_001389043.1 153935298 5401683 complement(3410101..3411009) 1 NC_009698.1 identified by match to protein family HMM PF01297; manganese/zinc/iron chelate ABC transporter substrate-binding protein 3411009 5401683 CLC_3263 Clostridium botulinum A str. Hall manganese/zinc/iron chelate ABC transporter substrate-binding protein YP_001389043.1 3410101 R 441771 CDS YP_001389044.1 153935404 5399186 3411207..3412448 1 NC_009698.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 3412448 5399186 CLC_3264 Clostridium botulinum A str. Hall HDIG domain-containing protein YP_001389044.1 3411207 D 441771 CDS YP_001389045.1 153937225 5401396 3412586..3413044 1 NC_009698.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 3413044 5401396 CLC_3265 Clostridium botulinum A str. Hall hypothetical protein YP_001389045.1 3412586 D 441771 CDS YP_001389046.1 153934756 5401440 3413041..3413754 1 NC_009698.1 identified by match to protein family HMM PF00814; glycoprotease 3413754 5401440 CLC_3266 Clostridium botulinum A str. Hall glycoprotease YP_001389046.1 3413041 D 441771 CDS YP_001389047.1 153935744 5400919 3413747..3414205 1 NC_009698.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 3414205 rimI 5400919 rimI Clostridium botulinum A str. Hall ribosomal-protein-alanine acetyltransferase YP_001389047.1 3413747 D 441771 CDS YP_001389048.1 153934882 5399826 complement(3414563..3415786) 1 NC_009698.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3415786 tyrS-2 5399826 tyrS-2 Clostridium botulinum A str. Hall tyrosyl-tRNA synthetase YP_001389048.1 3414563 R 441771 CDS YP_001389049.1 153935532 5401086 complement(3416019..3416426) 1 NC_009698.1 hypothetical protein 3416426 5401086 CLC_3269 Clostridium botulinum A str. Hall hypothetical protein YP_001389049.1 3416019 R 441771 CDS YP_001389050.1 153936199 5398773 complement(3416562..3417719) 1 NC_009698.1 identified by match to protein family HMM PF04326; ATP-binding protein 3417719 5398773 CLC_3270 Clostridium botulinum A str. Hall ATP-binding protein YP_001389050.1 3416562 R 441771 CDS YP_001389051.1 153934769 5401197 complement(3417867..3418430) 1 NC_009698.1 hypothetical protein 3418430 5401197 CLC_3271 Clostridium botulinum A str. Hall hypothetical protein YP_001389051.1 3417867 R 441771 CDS YP_001389052.1 153935448 5401302 complement(3418513..3418674) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3418674 5401302 CLC_3272 Clostridium botulinum A str. Hall hypothetical protein YP_001389052.1 3418513 R 441771 CDS YP_001389053.1 153936222 5398722 3418937..3419929 1 NC_009698.1 identified by match to protein family HMM PF01569; PAP2 family protein 3419929 5398722 CLC_3273 Clostridium botulinum A str. Hall PAP2 family protein YP_001389053.1 3418937 D 441771 CDS YP_001389054.1 153935243 5401130 complement(3420018..3421607) 1 NC_009698.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; peptide chain release factor 3 3421607 prfC 5401130 prfC Clostridium botulinum A str. Hall peptide chain release factor 3 YP_001389054.1 3420018 R 441771 CDS YP_001389055.1 153935239 5399851 3422112..3422918 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 3422918 5399851 CLC_3275 Clostridium botulinum A str. Hall HAD family hydrolase YP_001389055.1 3422112 D 441771 CDS YP_001389056.1 153935971 5398897 complement(3423037..3424035) 1 NC_009698.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 3424035 trpS 5398897 trpS Clostridium botulinum A str. Hall tryptophanyl-tRNA synthetase YP_001389056.1 3423037 R 441771 CDS YP_001389057.1 153936751 5401501 complement(3424214..3424351) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3424351 5401501 CLC_3277 Clostridium botulinum A str. Hall hypothetical protein YP_001389057.1 3424214 R 441771 CDS YP_001389058.1 153935715 5398494 complement(3424648..3425022) 1 NC_009698.1 identified by match to protein family HMM PF01880; match to protein family HMM PF06397; match to protein family HMM TIGR00319; match to protein family HMM TIGR00320; match to protein family HMM TIGR00332; desulfoferrodoxin 3425022 5398494 CLC_3278 Clostridium botulinum A str. Hall desulfoferrodoxin YP_001389058.1 3424648 R 441771 CDS YP_001389059.1 153937650 5400660 3425205..3425399 1 NC_009698.1 hypothetical protein 3425399 5400660 CLC_3279 Clostridium botulinum A str. Hall hypothetical protein YP_001389059.1 3425205 D 441771 CDS YP_001389060.1 153936689 5401542 complement(3425612..3434260) 1 NC_009698.1 identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205; cyclic beta 1-2 glucan synthetase 3434260 cgs 5401542 cgs Clostridium botulinum A str. Hall cyclic beta 1-2 glucan synthetase YP_001389060.1 3425612 R 441771 CDS YP_001389061.1 153936837 5400992 complement(3434525..3435811) 1 NC_009698.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 3435811 lysA 5400992 lysA Clostridium botulinum A str. Hall diaminopimelate decarboxylase YP_001389061.1 3434525 R 441771 CDS YP_001389062.1 153935924 5399635 complement(3435827..3437029) 1 NC_009698.1 identified by match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00657; aspartokinase 3437029 lysC 5399635 lysC Clostridium botulinum A str. Hall aspartokinase YP_001389062.1 3435827 R 441771 CDS YP_001389063.1 153934568 5399937 complement(3437425..3438723) 1 NC_009698.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 3438723 5399937 CLC_3283 Clostridium botulinum A str. Hall aminopeptidase 2 YP_001389063.1 3437425 R 441771 CDS YP_001389064.1 153937860 5399296 3438872..3440050 1 NC_009698.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 3440050 5399296 CLC_3284 Clostridium botulinum A str. Hall cation efflux family protein YP_001389064.1 3438872 D 441771 CDS YP_001389065.1 153935098 5400760 3440187..3441278 1 NC_009698.1 hypothetical protein 3441278 5400760 CLC_3285 Clostridium botulinum A str. Hall hypothetical protein YP_001389065.1 3440187 D 441771 CDS YP_001389066.1 153937538 5399729 complement(3441543..3443672) 1 NC_009698.1 helicase 3443672 5399729 CLC_3286 Clostridium botulinum A str. Hall helicase YP_001389066.1 3441543 R 441771 CDS YP_001389067.1 153936273 5398999 complement(3443693..3445669) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 3445669 ftsH-1 5398999 ftsH-1 Clostridium botulinum A str. Hall ATP-dependent metalloprotease FtsH YP_001389067.1 3443693 R 441771 CDS YP_001389068.1 153936049 5400823 complement(3446096..3447487) 1 NC_009698.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 3447487 5400823 CLC_3288 Clostridium botulinum A str. Hall dipeptidase PepV YP_001389068.1 3446096 R 441771 CDS YP_001389069.1 153936422 5398236 complement(3447688..3449124) 1 NC_009698.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 3449124 proS 5398236 proS Clostridium botulinum A str. Hall prolyl-tRNA synthetase YP_001389069.1 3447688 R 441771 CDS YP_001389070.1 153937562 5399601 complement(3449551..3449793) 1 NC_009698.1 identified by match to protein family HMM PF01541; GIY-YIG domain-containing protein 3449793 5399601 CLC_3290 Clostridium botulinum A str. Hall GIY-YIG domain-containing protein YP_001389070.1 3449551 R 441771 CDS YP_001389071.1 153934513 5399197 complement(3449811..3449999) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3449999 5399197 CLC_3291 Clostridium botulinum A str. Hall hypothetical protein YP_001389071.1 3449811 R 441771 CDS YP_001389072.1 153935728 5401412 complement(3450378..3452036) 1 NC_009698.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815; SulP family sulfate permease 3452036 5401412 CLC_3292 Clostridium botulinum A str. Hall SulP family sulfate permease YP_001389072.1 3450378 R 441771 CDS YP_001389073.2 532643388 5398925 complement(3452250..3453635) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3453635 5398925 CLC_3293 Clostridium botulinum A str. Hall sensor histidine kinase YP_001389073.2 3452250 R 441771 CDS YP_001389074.1 153937245 5399979 complement(3453619..3454311) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3454311 5399979 CLC_3294 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001389074.1 3453619 R 441771 CDS YP_001389075.1 153935402 5400512 complement(3454576..3455784) 1 NC_009698.1 hypothetical protein 3455784 5400512 CLC_3295 Clostridium botulinum A str. Hall hypothetical protein YP_001389075.1 3454576 R 441771 CDS YP_001389076.1 153936935 5401394 complement(3455789..3456694) 1 NC_009698.1 identified by match to protein family HMM PF00005; bacitracin ABC transporter ATP-binding protein 3456694 5401394 CLC_3296 Clostridium botulinum A str. Hall bacitracin ABC transporter ATP-binding protein YP_001389076.1 3455789 R 441771 CDS YP_001389077.1 153937407 5399762 3457051..3457254 1 NC_009698.1 hypothetical protein 3457254 5399762 CLC_3297 Clostridium botulinum A str. Hall hypothetical protein YP_001389077.1 3457051 D 441771 CDS YP_001389078.1 153934803 5401125 complement(3457381..3458376) 1 NC_009698.1 hypothetical protein 3458376 5401125 CLC_3298 Clostridium botulinum A str. Hall hypothetical protein YP_001389078.1 3457381 R 441771 CDS YP_001389079.1 153935535 5399055 complement(3458743..3459828) 1 NC_009698.1 identified by match to protein family HMM PF05913; hypothetical protein 3459828 5399055 CLC_3299 Clostridium botulinum A str. Hall hypothetical protein YP_001389079.1 3458743 R 441771 CDS YP_001389080.1 153936396 5398776 complement(3460135..3461028) 1 NC_009698.1 identified by match to protein family HMM PF01869; BadF/BadG/BcrA/BcrD ATPase 3461028 5398776 CLC_3300 Clostridium botulinum A str. Hall BadF/BadG/BcrA/BcrD ATPase YP_001389080.1 3460135 R 441771 CDS YP_001389081.1 153936401 5398699 complement(3461088..3461384) 1 NC_009698.1 identified by match to protein family HMM PF02255; PTS system lactose/cellobiose-specific family IIA subunit 3461384 5398699 CLC_3301 Clostridium botulinum A str. Hall PTS system lactose/cellobiose-specific family IIA subunit YP_001389081.1 3461088 R 441771 CDS YP_001389082.1 153935668 5398968 complement(3461626..3461934) 1 NC_009698.1 identified by match to protein family HMM PF02302; PTS system lactose/cellobiose-specific family IIB subunit 3461934 5398968 CLC_3302 Clostridium botulinum A str. Hall PTS system lactose/cellobiose-specific family IIB subunit YP_001389082.1 3461626 R 441771 CDS YP_001389083.1 153937484 5401726 complement(3462054..3464783) 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator 3464783 5401726 CLC_3303 Clostridium botulinum A str. Hall sigma-54 dependent transcriptional regulator YP_001389083.1 3462054 R 441771 CDS YP_001389084.1 153936767 5401108 complement(3464908..3466200) 1 NC_009698.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410; PTS system lactose/cellobiose family transporter subunit IIC 3466200 5401108 CLC_3304 Clostridium botulinum A str. Hall PTS system lactose/cellobiose family transporter subunit IIC YP_001389084.1 3464908 R 441771 CDS YP_001389085.1 153935899 5400002 complement(3466282..3467619) 1 NC_009698.1 identified by match to protein family HMM PF02056; glycosyl hydrolase 3467619 5400002 CLC_3305 Clostridium botulinum A str. Hall glycosyl hydrolase YP_001389085.1 3466282 R 441771 CDS YP_001389086.1 153935193 5400399 complement(3467975..3469288) 1 NC_009698.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3469288 5400399 CLC_3306 Clostridium botulinum A str. Hall diguanylate cyclase YP_001389086.1 3467975 R 441771 CDS YP_001389087.1 153937845 5398290 3469528..3470127 1 NC_009698.1 identified by match to protein family HMM PF00589; phage integrase site specific recombinase 3470127 5398290 CLC_3307 Clostridium botulinum A str. Hall phage integrase site specific recombinase YP_001389087.1 3469528 D 441771 CDS YP_001389088.1 153935048 5399193 complement(3470438..3470788) 1 NC_009698.1 identified by match to protein family HMM PF02675; match to protein family HMM TIGR03330; S-adenosylmethionine decarboxylase 3470788 speD 5399193 speD Clostridium botulinum A str. Hall S-adenosylmethionine decarboxylase YP_001389088.1 3470438 R 441771 CDS YP_001389089.1 153935490 5399292 complement(3470942..3472138) 1 NC_009698.1 hypothetical protein 3472138 5399292 CLC_3309 Clostridium botulinum A str. Hall hypothetical protein YP_001389089.1 3470942 R 441771 CDS YP_001389090.1 153936902 5399060 complement(3472660..3472935) 1 NC_009698.1 hypothetical protein 3472935 5399060 CLC_3310 Clostridium botulinum A str. Hall hypothetical protein YP_001389090.1 3472660 R 441771 CDS YP_001389091.1 153936286 5400476 complement(3473431..3474285) 1 NC_009698.1 identified by match to protein family HMM PF05368; hypothetical protein 3474285 5400476 CLC_3311 Clostridium botulinum A str. Hall hypothetical protein YP_001389091.1 3473431 R 441771 CDS YP_001389092.1 153937212 5401105 complement(3475275..3476660) 1 NC_009698.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 3476660 rumA-2 5401105 rumA-2 Clostridium botulinum A str. Hall 23S rRNA (uracil-5-)-methyltransferase RumA YP_001389092.1 3475275 R 441771 CDS YP_001389093.1 153934758 5399898 complement(3476893..3477246) 1 NC_009698.1 hypothetical protein 3477246 5399898 CLC_3313 Clostridium botulinum A str. Hall hypothetical protein YP_001389093.1 3476893 R 441771 CDS YP_001389094.1 153935708 5399362 complement(3477573..3478583) 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase 3478583 5399362 CLC_3314 Clostridium botulinum A str. Hall aldo/keto reductase YP_001389094.1 3477573 R 441771 CDS YP_001389095.1 153936639 5401025 complement(3478727..3480484) 1 NC_009698.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 3480484 pykA 5401025 pykA Clostridium botulinum A str. Hall pyruvate kinase YP_001389095.1 3478727 R 441771 CDS YP_001389096.1 153937606 5398510 complement(3480518..3481477) 1 NC_009698.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 3481477 pfkA 5398510 pfkA Clostridium botulinum A str. Hall 6-phosphofructokinase YP_001389096.1 3480518 R 441771 CDS YP_001389097.1 153935249 5398395 complement(3481719..3485276) 1 NC_009698.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 3485276 dnaE 5398395 dnaE Clostridium botulinum A str. Hall DNA polymerase III DnaE YP_001389097.1 3481719 R 441771 CDS YP_001389098.1 153936258 5401522 complement(3485439..3486386) 1 NC_009698.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 3486386 5401522 CLC_3318 Clostridium botulinum A str. Hall hypothetical protein YP_001389098.1 3485439 R 441771 CDS YP_001389099.1 153936113 5400344 complement(3486393..3487730) 1 NC_009698.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 3487730 5400344 CLC_3319 Clostridium botulinum A str. Hall hypothetical protein YP_001389099.1 3486393 R 441771 CDS YP_001389100.1 153935149 5400836 complement(3487727..3488611) 1 NC_009698.1 identified by match to protein family HMM PF03668; hypothetical protein 3488611 5400836 CLC_3320 Clostridium botulinum A str. Hall hypothetical protein YP_001389100.1 3487727 R 441771 CDS YP_001389101.1 153934775 5399731 complement(3488731..3489651) 1 NC_009698.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 3489651 murB 5399731 murB Clostridium botulinum A str. Hall UDP-N-acetylenolpyruvoylglucosamine reductase YP_001389101.1 3488731 R 441771 CDS YP_001389102.1 153936816 5399343 complement(3489720..3490451) 1 NC_009698.1 identified by match to protein family HMM PF02811; hydrolase 3490451 5399343 CLC_3322 Clostridium botulinum A str. Hall hydrolase YP_001389102.1 3489720 R 441771 CDS YP_001389103.1 153936269 5401217 complement(3490500..3492356) 1 NC_009698.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 3492356 uvrC 5401217 uvrC Clostridium botulinum A str. Hall excinuclease ABC subunit C YP_001389103.1 3490500 R 441771 CDS YP_001389104.1 153935735 5401271 complement(3492370..3492978) 1 NC_009698.1 identified by match to protein family HMM PF04307; metal-dependent hydrolase, membrane-bound 3492978 5401271 CLC_3324 Clostridium botulinum A str. Hall metal-dependent hydrolase, membrane-bound YP_001389104.1 3492370 R 441771 CDS YP_001389105.1 153934470 5398855 complement(3493165..3494061) 1 NC_009698.1 identified by match to protein family HMM PF01336; match to protein family HMM PF01966; HD domain-containing protein 3494061 5398855 CLC_3325 Clostridium botulinum A str. Hall HD domain-containing protein YP_001389105.1 3493165 R 441771 CDS YP_001389106.1 153937197 5398783 complement(3494089..3495519) 1 NC_009698.1 identified by match to protein family HMM PF00905; penicillin-binding protein 3495519 5398783 CLC_3326 Clostridium botulinum A str. Hall penicillin-binding protein YP_001389106.1 3494089 R 441771 CDS YP_001389107.1 153936998 5400085 complement(3495524..3496753) 1 NC_009698.1 identified by match to protein family HMM PF01098; cell cycle protein FtsW 3496753 5400085 CLC_3327 Clostridium botulinum A str. Hall cell cycle protein FtsW YP_001389107.1 3495524 R 441771 CDS YP_001389108.1 153937307 5398705 complement(3496764..3497201) 1 NC_009698.1 identified by match to protein family HMM PF00498; FHA domain-containing protein 3497201 5398705 CLC_3328 Clostridium botulinum A str. Hall FHA domain-containing protein YP_001389108.1 3496764 R 441771 CDS YP_001389109.1 153937739 5398483 complement(3497300..3500122) 1 NC_009698.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3500122 uvrA 5398483 uvrA Clostridium botulinum A str. Hall excinuclease ABC subunit A YP_001389109.1 3497300 R 441771 CDS YP_001389110.1 153935352 5401333 complement(3500141..3502129) 1 NC_009698.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3502129 uvrB 5401333 uvrB Clostridium botulinum A str. Hall excinuclease ABC subunit B YP_001389110.1 3500141 R 441771 CDS YP_001389111.1 153936341 5401633 complement(3502131..3503426) 1 NC_009698.1 hypothetical protein 3503426 5401633 CLC_3331 Clostridium botulinum A str. Hall hypothetical protein YP_001389111.1 3502131 R 441771 CDS YP_001389112.1 153937062 5399242 complement(3503515..3504720) 1 NC_009698.1 identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 3504720 5399242 CLC_3332 Clostridium botulinum A str. Hall carboxyl-terminal protease YP_001389112.1 3503515 R 441771 CDS YP_001389113.1 153934839 5401403 complement(3504930..3505820) 1 NC_009698.1 identified by match to protein family HMM PF02687; cell division protein FtsX 3505820 5401403 CLC_3333 Clostridium botulinum A str. Hall cell division protein FtsX YP_001389113.1 3504930 R 441771 CDS YP_001389114.1 153935674 5401346 complement(3505810..3506496) 1 NC_009698.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 3506496 5401346 CLC_3334 Clostridium botulinum A str. Hall cell division ATP-binding protein FtsE YP_001389114.1 3505810 R 441771 CDS YP_001389115.1 153936906 5398751 complement(3506652..3507554) 1 NC_009698.1 identified by match to protein family HMM PF02588; hypothetical protein 3507554 5398751 CLC_3335 Clostridium botulinum A str. Hall hypothetical protein YP_001389115.1 3506652 R 441771 CDS YP_001389116.1 153936472 5398565 complement(3507647..3507856) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3507856 5398565 CLC_3336 Clostridium botulinum A str. Hall hypothetical protein YP_001389116.1 3507647 R 441771 CDS YP_001389117.1 153936964 5399079 complement(3508070..3509011) 1 NC_009698.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 3509011 5399079 CLC_3337 Clostridium botulinum A str. Hall transketolase, C-terminal subunit YP_001389117.1 3508070 R 441771 CDS YP_001389118.1 153937280 5401361 complement(3509011..3509835) 1 NC_009698.1 identified by match to protein family HMM PF00456; transketolase 3509835 5401361 CLC_3338 Clostridium botulinum A str. Hall transketolase YP_001389118.1 3509011 R 441771 CDS YP_001389119.1 153936570 5398283 complement(3510098..3510451) 1 NC_009698.1 identified by match to protein family HMM PF02452; PemK family protein 3510451 5398283 CLC_3339 Clostridium botulinum A str. Hall PemK family protein YP_001389119.1 3510098 R 441771 CDS YP_001389120.1 153937328 5401499 complement(3510408..3510731) 1 NC_009698.1 hypothetical protein 3510731 5401499 CLC_3340 Clostridium botulinum A str. Hall hypothetical protein YP_001389120.1 3510408 R 441771 CDS YP_001389121.1 153935067 5401733 complement(3510870..3512030) 1 NC_009698.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 3512030 alr 5401733 alr Clostridium botulinum A str. Hall alanine racemase YP_001389121.1 3510870 R 441771 CDS YP_001389122.1 153935785 5401644 complement(3512058..3512672) 1 NC_009698.1 hypothetical protein 3512672 5401644 CLC_3342 Clostridium botulinum A str. Hall hypothetical protein YP_001389122.1 3512058 R 441771 CDS YP_001389123.1 153936968 5401058 complement(3512872..3514374) 1 NC_009698.1 identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase 3514374 5401058 CLC_3343 Clostridium botulinum A str. Hall carbohydrate kinase YP_001389123.1 3512872 R 441771 CDS YP_001389124.1 153937698 5400539 complement(3514371..3514751) 1 NC_009698.1 identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier-protein) synthase 3514751 acpS 5400539 acpS Clostridium botulinum A str. Hall holo-(acyl-carrier-protein) synthase YP_001389124.1 3514371 R 441771 CDS YP_001389127.1 153937469 5398882 complement(3515624..3516949) 1 NC_009698.1 identified by match to protein family HMM PF03553; match to protein family HMM PF06808; Na+/H+ antiporter family protein 3516949 5398882 CLC_3347 Clostridium botulinum A str. Hall Na+/H+ antiporter family protein YP_001389127.1 3515624 R 441771 CDS YP_001389128.1 153935062 5399889 complement(3517254..3518111) 1 NC_009698.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; hypothetical protein 3518111 5399889 CLC_3348 Clostridium botulinum A str. Hall hypothetical protein YP_001389128.1 3517254 R 441771 CDS YP_001389129.1 153937716 5399067 complement(3518271..3518930) 1 NC_009698.1 hypothetical protein 3518930 5399067 CLC_3349 Clostridium botulinum A str. Hall hypothetical protein YP_001389129.1 3518271 R 441771 CDS YP_001389130.1 153936972 5400196 complement(3519183..3519776) 1 NC_009698.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3519776 rpsD-1 5400196 rpsD-1 Clostridium botulinum A str. Hall 30S ribosomal protein S4 YP_001389130.1 3519183 R 441771 CDS YP_001389131.1 153937781 5400507 3520222..3521397 1 NC_009698.1 identified by match to protein family HMM PF00375; sodium:dicarboxylate symporter family protein 3521397 5400507 CLC_3351 Clostridium botulinum A str. Hall sodium:dicarboxylate symporter family protein YP_001389131.1 3520222 D 441771 CDS YP_001389132.1 153936230 5400598 complement(3521580..3522173) 1 NC_009698.1 identified by match to protein family HMM PF01569; PAP2 family protein 3522173 5400598 CLC_3352 Clostridium botulinum A str. Hall PAP2 family protein YP_001389132.1 3521580 R 441771 CDS YP_001389133.1 153934710 5398946 3523242..3523724 1 NC_009698.1 hypothetical protein 3523724 5398946 CLC_3354 Clostridium botulinum A str. Hall hypothetical protein YP_001389133.1 3523242 D 441771 CDS YP_001389134.1 153937378 5400779 complement(3523930..3525756) 1 NC_009698.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 3525756 glmS 5400779 glmS Clostridium botulinum A str. Hall glucosamine--fructose-6-phosphate aminotransferase YP_001389134.1 3523930 R 441771 CDS YP_001389135.1 153936573 5398753 complement(3526359..3527036) 1 NC_009698.1 identified by match to protein family HMM PF00923; transaldolase 3527036 5398753 CLC_3356 Clostridium botulinum A str. Hall transaldolase YP_001389135.1 3526359 R 441771 CDS YP_001389136.1 153936789 5401053 complement(3527055..3527702) 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; haloacid dehalogenase 3527702 5401053 CLC_3357 Clostridium botulinum A str. Hall haloacid dehalogenase YP_001389136.1 3527055 R 441771 CDS YP_001389137.1 153936351 5399122 complement(3527726..3528511) 1 NC_009698.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 3528511 srlD 5399122 srlD Clostridium botulinum A str. Hall sorbitol-6-phosphate dehydrogenase YP_001389137.1 3527726 R 441771 CDS YP_001389138.1 153935324 5398960 complement(3528531..3528896) 1 NC_009698.1 identified by match to protein family HMM PF03829; PTS system glucitol/sorbitol-specific transporter subunit IIA 3528896 5398960 CLC_3359 Clostridium botulinum A str. Hall PTS system glucitol/sorbitol-specific transporter subunit IIA YP_001389138.1 3528531 R 441771 CDS YP_001389139.1 153936044 5399616 complement(3529112..3530116) 1 NC_009698.1 identified by match to protein family HMM PF03612; match to protein family HMM PF07663; match to protein family HMM TIGR00825; PTS system glucitol/sorbitol-specific transporter subunit IIBC 3530116 5399616 CLC_3360 Clostridium botulinum A str. Hall PTS system glucitol/sorbitol-specific transporter subunit IIBC YP_001389139.1 3529112 R 441771 CDS YP_001389140.1 153936430 5399458 complement(3530129..3530674) 1 NC_009698.1 identified by match to protein family HMM PF03608; match to protein family HMM TIGR00821; PTS system glucitol/sorbitol-specific transporter subunit IIC 3530674 5399458 CLC_3361 Clostridium botulinum A str. Hall PTS system glucitol/sorbitol-specific transporter subunit IIC YP_001389140.1 3530129 R 441771 CDS YP_001389141.1 153937567 5400878 complement(3530717..3531112) 1 NC_009698.1 identified by match to protein family HMM PF06923; glucitol operon activator protein 3531112 gutM 5400878 gutM Clostridium botulinum A str. Hall glucitol operon activator protein YP_001389141.1 3530717 R 441771 CDS YP_001389142.1 153934526 5401044 complement(3531126..3532175) 1 NC_009698.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; L-iditol 2-dehydrogenase 3532175 5401044 CLC_3363 Clostridium botulinum A str. Hall L-iditol 2-dehydrogenase YP_001389142.1 3531126 R 441771 CDS YP_001389143.1 153935724 5401295 complement(3532210..3533181) 1 NC_009698.1 identified by match to protein family HMM PF04198; glucitol operon regulator 3533181 5401295 CLC_3364 Clostridium botulinum A str. Hall glucitol operon regulator YP_001389143.1 3532210 R 441771 CDS YP_001389144.1 153936018 5399752 complement(3533536..3534885) 1 NC_009698.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3534885 glmM 5399752 glmM Clostridium botulinum A str. Hall phosphoglucosamine mutase YP_001389144.1 3533536 R 441771 CDS YP_008472700.1 532643414 16691482 complement(3535020..3535550) 1 NC_009698.1 2-oxoglutarate ferredoxin oxidoreductase subunit gamma 3535550 16691482 CLC_3366A Clostridium botulinum A str. Hall 2-oxoglutarate ferredoxin oxidoreductase subunit gamma YP_008472700.1 3535020 R 441771 CDS YP_008472701.1 532643415 16691473 complement(3535552..3536301) 1 NC_009698.1 2-oxoglutarate oxidoreductase 3536301 16691473 CLC_3366B Clostridium botulinum A str. Hall 2-oxoglutarate oxidoreductase YP_008472701.1 3535552 R 441771 CDS YP_001389145.1 153936478 5400580 complement(3536301..3537371) 1 NC_009698.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 3537371 5400580 CLC_3367 Clostridium botulinum A str. Hall 2-ketoisovalerate ferredoxin reductase YP_001389145.1 3536301 R 441771 CDS YP_001389146.1 153937869 5400319 complement(3537387..3537596) 1 NC_009698.1 identified by match to protein family HMM PF00037; 2-oxoacid:acceptor oxidoreductase subunit delta 3537596 5400319 CLC_3368 Clostridium botulinum A str. Hall 2-oxoacid:acceptor oxidoreductase subunit delta YP_001389146.1 3537387 R 441771 CDS YP_001389147.1 153935241 5400338 complement(3537698..3538360) 1 NC_009698.1 hypothetical protein 3538360 5400338 CLC_3369 Clostridium botulinum A str. Hall hypothetical protein YP_001389147.1 3537698 R 441771 CDS YP_001389148.1 153937755 5398837 complement(3538623..3539693) 1 NC_009698.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 3539693 buk-1 5398837 buk-1 Clostridium botulinum A str. Hall butyrate kinase YP_001389148.1 3538623 R 441771 CDS YP_001389149.1 153934606 5399849 complement(3539722..3540633) 1 NC_009698.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 3540633 ptb 5399849 ptb Clostridium botulinum A str. Hall phosphate butyryltransferase YP_001389149.1 3539722 R 441771 CDS YP_001389150.1 153935792 5401705 complement(3540626..3541720) 1 NC_009698.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 3541720 buk-2 5401705 buk-2 Clostridium botulinum A str. Hall butyrate kinase YP_001389150.1 3540626 R 441771 CDS YP_001389151.1 153937004 5401222 complement(3541821..3543419) 1 NC_009698.1 oxidoreductase, FAD-binding 3543419 5401222 CLC_3373 Clostridium botulinum A str. Hall oxidoreductase, FAD-binding YP_001389151.1 3541821 R 441771 CDS YP_001389152.1 153936727 5400642 complement(3543421..3544701) 1 NC_009698.1 identified by match to protein family HMM PF07949; hypothetical protein 3544701 5400642 CLC_3374 Clostridium botulinum A str. Hall hypothetical protein YP_001389152.1 3543421 R 441771 CDS YP_001389153.1 153937528 5399282 complement(3544671..3545519) 1 NC_009698.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 3545519 5399282 CLC_3375 Clostridium botulinum A str. Hall hypothetical protein YP_001389153.1 3544671 R 441771 CDS YP_001389154.1 153935370 5399572 3545774..3546307 1 NC_009698.1 identified by match to protein family HMM PF07486; cell wall hydrolase 3546307 5399572 CLC_3376 Clostridium botulinum A str. Hall cell wall hydrolase YP_001389154.1 3545774 D 441771 CDS YP_001389155.1 153936161 5398303 complement(3546699..3547562) 1 NC_009698.1 identified by match to protein family HMM PF01134; match to protein family HMM PF07992; pyridine nucleotide-disulfide family oxidoreductase 3547562 5398303 CLC_3377 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide family oxidoreductase YP_001389155.1 3546699 R 441771 CDS YP_001389156.1 153937738 5398792 complement(3547628..3547945) 1 NC_009698.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 3547945 trx 5398792 trx Clostridium botulinum A str. Hall thioredoxin YP_001389156.1 3547628 R 441771 CDS YP_001389157.1 153937037 5400819 complement(3548054..3549229) 1 NC_009698.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01975; isoaspartyl dipeptidase 3549229 iadA 5400819 iadA Clostridium botulinum A str. Hall isoaspartyl dipeptidase YP_001389157.1 3548054 R 441771 CDS YP_001389158.1 153935918 5401632 complement(3549304..3550557) 1 NC_009698.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3550557 5401632 CLC_3380 Clostridium botulinum A str. Hall hypothetical protein YP_001389158.1 3549304 R 441771 CDS YP_001389159.1 153937333 5400736 complement(3550585..3551325) 1 NC_009698.1 lipoprotein 3551325 5400736 CLC_3381 Clostridium botulinum A str. Hall lipoprotein YP_001389159.1 3550585 R 441771 CDS YP_001389160.1 153937384 5399105 complement(3551428..3553047) 1 NC_009698.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase 3553047 ptsI 5399105 ptsI Clostridium botulinum A str. Hall phosphoenolpyruvate-protein phosphotransferase YP_001389160.1 3551428 R 441771 CDS YP_001389161.1 153936184 5400647 3553365..3555374 1 NC_009698.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; sensory box sigma-54 dependent transcriptional regulator 3555374 5400647 CLC_3383 Clostridium botulinum A str. Hall sensory box sigma-54 dependent transcriptional regulator YP_001389161.1 3553365 D 441771 CDS YP_001389162.1 153935656 5401771 complement(3555511..3556218) 1 NC_009698.1 identified by match to protein family HMM PF00515; hypothetical protein 3556218 5401771 CLC_3384 Clostridium botulinum A str. Hall hypothetical protein YP_001389162.1 3555511 R 441771 CDS YP_001389163.1 153934695 5399471 complement(3556288..3556842) 1 NC_009698.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 3556842 5399471 CLC_3385 Clostridium botulinum A str. Hall tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta YP_001389163.1 3556288 R 441771 CDS YP_001389164.1 153936630 5398713 complement(3556943..3557785) 1 NC_009698.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3557785 5398713 CLC_3386 Clostridium botulinum A str. Hall fumarate hydratase YP_001389164.1 3556943 R 441771 CDS YP_001389165.1 153937501 5401172 complement(3557926..3558630) 1 NC_009698.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883; N-acetylmuramoyl-L-alanine amidase 3558630 5401172 CLC_3387 Clostridium botulinum A str. Hall N-acetylmuramoyl-L-alanine amidase YP_001389165.1 3557926 R 441771 CDS YP_001389166.1 153937343 5400831 complement(3558896..3560512) 1 NC_009698.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704; Na/Pi-cotransporter family protein/PhoU family protein 3560512 5400831 CLC_3388 Clostridium botulinum A str. Hall Na/Pi-cotransporter family protein/PhoU family protein YP_001389166.1 3558896 R 441771 CDS YP_001389167.1 153936368 5400410 complement(3560818..3561210) 1 NC_009698.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 3561210 rpsI 5400410 rpsI Clostridium botulinum A str. Hall 30S ribosomal protein S9 YP_001389167.1 3560818 R 441771 CDS YP_001389168.1 153935388 5399674 complement(3561236..3561670) 1 NC_009698.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 3561670 rplM 5399674 rplM Clostridium botulinum A str. Hall 50S ribosomal protein L13 YP_001389168.1 3561236 R 441771 CDS YP_001389169.1 153934471 5398903 complement(3561794..3562534) 1 NC_009698.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3562534 truA 5398903 truA Clostridium botulinum A str. Hall tRNA pseudouridine synthase A YP_001389169.1 3561794 R 441771 CDS YP_001389170.1 153937162 5398548 complement(3562534..3563337) 1 NC_009698.1 identified by match to protein family HMM PF02361; cobalt ABC transporter permease 3563337 5398548 CLC_3392 Clostridium botulinum A str. Hall cobalt ABC transporter permease YP_001389170.1 3562534 R 441771 CDS YP_001389171.1 153936836 5400086 complement(3563334..3564200) 1 NC_009698.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 3564200 cbiO 5400086 cbiO Clostridium botulinum A str. Hall cobalt transporter ATP-binding subunit YP_001389171.1 3563334 R 441771 CDS YP_001389172.1 153935105 5400680 complement(3564185..3565033) 1 NC_009698.1 with CbiNQ forms the ABC transporter for cobalt import; Mycoplasmas have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 3565033 5400680 CLC_3394 Clostridium botulinum A str. Hall cobalt transporter ATP-binding subunit YP_001389172.1 3564185 R 441771 CDS YP_001389173.1 153937663 5399634 complement(3565124..3565465) 1 NC_009698.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 3565465 rplQ 5399634 rplQ Clostridium botulinum A str. Hall 50S ribosomal protein L17 YP_001389173.1 3565124 R 441771 CDS YP_001389174.1 153936668 5400901 complement(3565509..3566456) 1 NC_009698.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 3566456 rpoA 5400901 rpoA Clostridium botulinum A str. Hall DNA-directed RNA polymerase subunit alpha YP_001389174.1 3565509 R 441771 CDS YP_001389175.1 153935510 5401658 complement(3566524..3567144) 1 NC_009698.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3567144 rpsD 5401658 rpsD Clostridium botulinum A str. Hall 30S ribosomal protein S4 YP_001389175.1 3566524 R 441771 CDS YP_001389176.1 153936543 5399769 complement(3567179..3567577) 1 NC_009698.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 3567577 rpsK 5399769 rpsK Clostridium botulinum A str. Hall 30S ribosomal protein S11 YP_001389176.1 3567179 R 441771 CDS YP_001389177.1 153937296 5398230 complement(3567595..3567966) 1 NC_009698.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 3567966 rpsM 5398230 rpsM Clostridium botulinum A str. Hall 30S ribosomal protein S13 YP_001389177.1 3567595 R 441771 CDS YP_001389178.1 153934585 5400708 complement(3568079..3568192) 1 NC_009698.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 3568192 rpmJ 5400708 rpmJ Clostridium botulinum A str. Hall 50S ribosomal protein L36 YP_001389178.1 3568079 R 441771 CDS YP_001389179.1 153935368 5401099 complement(3568209..3568427) 1 NC_009698.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 3568427 infA 5401099 infA Clostridium botulinum A str. Hall translation initiation factor IF-1 YP_001389179.1 3568209 R 441771 CDS YP_001389180.1 153936111 5401314 complement(3568435..3568716) 1 NC_009698.1 hypothetical protein 3568716 5401314 CLC_3402 Clostridium botulinum A str. Hall hypothetical protein YP_001389180.1 3568435 R 441771 CDS YP_001389181.1 153936198 5398790 complement(3568731..3569480) 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 3569480 map-1 5398790 map-1 Clostridium botulinum A str. Hall methionine aminopeptidase YP_001389181.1 3568731 R 441771 CDS YP_001389182.1 153937525 5400834 complement(3569480..3570130) 1 NC_009698.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3570130 adk 5400834 adk Clostridium botulinum A str. Hall adenylate kinase YP_001389182.1 3569480 R 441771 CDS YP_001389183.1 153935277 5401196 complement(3570154..3571431) 1 NC_009698.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 3571431 secY 5401196 secY Clostridium botulinum A str. Hall preprotein translocase subunit SecY YP_001389183.1 3570154 R 441771 CDS YP_001389184.1 153935612 5398242 complement(3571432..3571872) 1 NC_009698.1 late assembly protein; 50S ribosomal protein L15 3571872 rplO 5398242 rplO Clostridium botulinum A str. Hall 50S ribosomal protein L15 YP_001389184.1 3571432 R 441771 CDS YP_001389185.1 153934888 5399301 complement(3571892..3572071) 1 NC_009698.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 3572071 rpmD 5399301 rpmD Clostridium botulinum A str. Hall 50S ribosomal protein L30 YP_001389185.1 3571892 R 441771 CDS YP_001389186.1 153935616 5400456 complement(3572085..3572582) 1 NC_009698.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 3572582 rpsE 5400456 rpsE Clostridium botulinum A str. Hall 30S ribosomal protein S5 YP_001389186.1 3572085 R 441771 CDS YP_001389187.1 153936186 5399743 complement(3572600..3572959) 1 NC_009698.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 3572959 rplR 5399743 rplR Clostridium botulinum A str. Hall 50S ribosomal protein L18 YP_001389187.1 3572600 R 441771 CDS YP_001389188.1 153937770 5400460 complement(3572978..3573520) 1 NC_009698.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 3573520 rplF 5400460 rplF Clostridium botulinum A str. Hall 50S ribosomal protein L6 YP_001389188.1 3572978 R 441771 CDS YP_001389189.1 153935131 5401017 complement(3573544..3573942) 1 NC_009698.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 3573942 rpsH 5401017 rpsH Clostridium botulinum A str. Hall 30S ribosomal protein S8 YP_001389189.1 3573544 R 441771 CDS YP_001389190.1 153936054 5401682 complement(3573972..3574157) 1 NC_009698.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 3574157 rpsN 5401682 rpsN Clostridium botulinum A str. Hall 30S ribosomal protein S14 YP_001389190.1 3573972 R 441771 CDS YP_001389191.1 153936629 5398316 complement(3574174..3574716) 1 NC_009698.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 3574716 rplE 5398316 rplE Clostridium botulinum A str. Hall 50S ribosomal protein L5 YP_001389191.1 3574174 R 441771 CDS YP_001389192.1 153934823 5398659 complement(3574739..3575056) 1 NC_009698.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 3575056 rplX 5398659 rplX Clostridium botulinum A str. Hall 50S ribosomal protein L24 YP_001389192.1 3574739 R 441771 CDS YP_001389193.1 153935678 5400830 complement(3575080..3575448) 1 NC_009698.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 3575448 rplN 5400830 rplN Clostridium botulinum A str. Hall 50S ribosomal protein L14 YP_001389193.1 3575080 R 441771 CDS YP_001389194.1 153936242 5398889 complement(3575483..3575737) 1 NC_009698.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 3575737 rpsQ 5398889 rpsQ Clostridium botulinum A str. Hall 30S ribosomal protein S17 YP_001389194.1 3575483 R 441771 CDS YP_001389195.1 153934906 5399220 complement(3575759..3575971) 1 NC_009698.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 3575971 rpmC 5399220 rpmC Clostridium botulinum A str. Hall 50S ribosomal protein L29 YP_001389195.1 3575759 R 441771 CDS YP_001389196.1 153937859 5398278 complement(3575961..3576404) 1 NC_009698.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 3576404 rplP 5398278 rplP Clostridium botulinum A str. Hall 50S ribosomal protein L16 YP_001389196.1 3575961 R 441771 CDS YP_001389197.1 153935588 5398471 complement(3576422..3577093) 1 NC_009698.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 3577093 rpsC 5398471 rpsC Clostridium botulinum A str. Hall 30S ribosomal protein S3 YP_001389197.1 3576422 R 441771 CDS YP_001389198.1 153934971 5401521 complement(3577111..3577446) 1 NC_009698.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 3577446 rplV 5401521 rplV Clostridium botulinum A str. Hall 50S ribosomal protein L22 YP_001389198.1 3577111 R 441771 CDS YP_001389199.1 153937073 5400389 complement(3577468..3577752) 1 NC_009698.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 3577752 rpsS 5400389 rpsS Clostridium botulinum A str. Hall 30S ribosomal protein S19 YP_001389199.1 3577468 R 441771 CDS YP_001389200.1 153936530 5400013 complement(3577822..3578655) 1 NC_009698.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 3578655 rplB 5400013 rplB Clostridium botulinum A str. Hall 50S ribosomal protein L2 YP_001389200.1 3577822 R 441771 CDS YP_001389201.1 153935766 5400688 complement(3578710..3579003) 1 NC_009698.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 3579003 rplW 5400688 rplW Clostridium botulinum A str. Hall 50S ribosomal protein L23 YP_001389201.1 3578710 R 441771 CDS YP_001389202.1 153934780 5400181 complement(3579003..3579623) 1 NC_009698.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 3579623 rplD 5400181 rplD Clostridium botulinum A str. Hall 50S ribosomal protein L4 YP_001389202.1 3579003 R 441771 CDS YP_001389203.1 153937726 5399375 complement(3579648..3580277) 1 NC_009698.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 3580277 rplC 5399375 rplC Clostridium botulinum A str. Hall 50S ribosomal protein L3 YP_001389203.1 3579648 R 441771 CDS YP_001389204.1 153936753 5400740 complement(3580367..3580675) 1 NC_009698.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 3580675 rpsJ 5400740 rpsJ Clostridium botulinum A str. Hall 30S ribosomal protein S10 YP_001389204.1 3580367 R 441771 CDS YP_001389205.1 153937813 5401647 complement(3581072..3582265) 1 NC_009698.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3582265 tuf-1 5401647 tuf-1 Clostridium botulinum A str. Hall elongation factor Tu YP_001389205.1 3581072 R 441771 CDS YP_001389206.1 153936637 5398496 complement(3582305..3584374) 1 NC_009698.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3584374 fusA-1 5398496 fusA-1 Clostridium botulinum A str. Hall elongation factor G YP_001389206.1 3582305 R 441771 CDS YP_001389207.1 153935931 5401748 complement(3584440..3584910) 1 NC_009698.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 3584910 rpsG 5401748 rpsG Clostridium botulinum A str. Hall 30S ribosomal protein S7 YP_001389207.1 3584440 R 441771 CDS YP_001389208.1 153935598 5398508 complement(3585071..3585448) 1 NC_009698.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 3585448 rpsL 5398508 rpsL Clostridium botulinum A str. Hall 30S ribosomal protein S12 YP_001389208.1 3585071 R 441771 CDS YP_001389209.1 153937336 5398333 complement(3585524..3585763) 1 NC_009698.1 identified by match to protein family HMM PF01248; ribosomal protein L7Ae family protein 3585763 5398333 CLC_3431 Clostridium botulinum A str. Hall ribosomal protein L7Ae family protein YP_001389209.1 3585524 R 441771 CDS YP_001389210.1 153936207 5401448 complement(3585888..3589424) 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 3589424 rpoC 5401448 rpoC Clostridium botulinum A str. Hall DNA-directed RNA polymerase subunit beta' YP_001389210.1 3585888 R 441771 CDS YP_001389211.1 153935474 5400527 complement(3589445..3593143) 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 3593143 rpoB 5400527 rpoB Clostridium botulinum A str. Hall DNA-directed RNA polymerase subunit beta YP_001389211.1 3589445 R 441771 CDS YP_001389212.1 153934485 5398802 complement(3593408..3593779) 1 NC_009698.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 3593779 rplL 5398802 rplL Clostridium botulinum A str. Hall 50S ribosomal protein L7/L12 YP_001389212.1 3593408 R 441771 CDS YP_001389213.1 153937252 5398518 complement(3593826..3594326) 1 NC_009698.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 3594326 rplJ 5398518 rplJ Clostridium botulinum A str. Hall 50S ribosomal protein L10 YP_001389213.1 3593826 R 441771 CDS YP_001389214.1 153935858 5399070 complement(3594528..3595217) 1 NC_009698.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 3595217 rplA 5399070 rplA Clostridium botulinum A str. Hall 50S ribosomal protein L1 YP_001389214.1 3594528 R 441771 CDS YP_001389215.1 153935759 5399146 complement(3595274..3595699) 1 NC_009698.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 3595699 rplK 5399146 rplK Clostridium botulinum A str. Hall 50S ribosomal protein L11 YP_001389215.1 3595274 R 441771 CDS YP_001389216.1 153936508 5401486 complement(3595770..3596294) 1 NC_009698.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 3596294 nusG 5401486 nusG Clostridium botulinum A str. Hall transcription antitermination protein NusG YP_001389216.1 3595770 R 441771 CDS YP_001389217.1 153937292 5400147 complement(3596341..3596568) 1 NC_009698.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 3596568 secE 5400147 secE Clostridium botulinum A str. Hall preprotein translocase subunit SecE YP_001389217.1 3596341 R 441771 CDS YP_001389218.1 153935475 5399420 complement(3596618..3596767) 1 NC_009698.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 3596767 rpmG 5399420 rpmG Clostridium botulinum A str. Hall 50S ribosomal protein L33 YP_001389218.1 3596618 R 441771 CDS YP_001389219.1 153936380 5401095 complement(3596969..3598162) 1 NC_009698.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 3598162 tuf-2 5401095 tuf-2 Clostridium botulinum A str. Hall elongation factor Tu YP_001389219.1 3596969 R 441771 CDS YP_001389220.1 153937099 5399964 complement(3598478..3599119) 1 NC_009698.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 3599119 sigH 5399964 sigH Clostridium botulinum A str. Hall RNA polymerase factor sigma-70 YP_001389220.1 3598478 R 441771 CDS YP_001389221.1 153937756 5398642 complement(3599193..3599702) 1 NC_009698.1 identified by match to protein family HMM PF05991; hypothetical protein 3599702 5398642 CLC_3446 Clostridium botulinum A str. Hall hypothetical protein YP_001389221.1 3599193 R 441771 CDS YP_001389222.1 153937009 5400891 complement(3599705..3600478) 1 NC_009698.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 3600478 5400891 CLC_3447 Clostridium botulinum A str. Hall RNA methyltransferase YP_001389222.1 3599705 R 441771 CDS YP_001389223.1 153937521 5401706 complement(3600481..3601233) 1 NC_009698.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 3601233 thyX 5401706 thyX Clostridium botulinum A str. Hall FAD-dependent thymidylate synthase YP_001389223.1 3600481 R 441771 CDS YP_001389224.1 153934743 5398739 complement(3601223..3601663) 1 NC_009698.1 identified by match to protein family HMM PF00636; RNase3 domain-containing protein 3601663 5398739 CLC_3449 Clostridium botulinum A str. Hall RNase3 domain-containing protein YP_001389224.1 3601223 R 441771 CDS YP_001389225.1 153937063 5401552 complement(3601712..3603109) 1 NC_009698.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 3603109 cysS 5401552 cysS Clostridium botulinum A str. Hall cysteinyl-tRNA synthetase YP_001389225.1 3601712 R 441771 CDS YP_001389226.1 153934948 5399538 complement(3603138..3604355) 1 NC_009698.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01127; threonine dehydratase 3604355 ilvA 5399538 ilvA Clostridium botulinum A str. Hall threonine dehydratase YP_001389226.1 3603138 R 441771 CDS YP_001389227.1 153935851 5401347 complement(3604427..3606064) 1 NC_009698.1 identified by match to protein family HMM PF03129; match to protein family HMM PF04073; prolyl-tRNA synthetase 3606064 5401347 CLC_3452 Clostridium botulinum A str. Hall prolyl-tRNA synthetase YP_001389227.1 3604427 R 441771 CDS YP_001389228.1 153936440 5401737 complement(3606175..3606864) 1 NC_009698.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3606864 ispD 5401737 ispD Clostridium botulinum A str. Hall 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001389228.1 3606175 R 441771 CDS YP_001389229.1 153937424 5401042 complement(3606866..3607966) 1 NC_009698.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 3607966 5401042 CLC_3454 Clostridium botulinum A str. Hall PIN/TRAM domain-containing protein YP_001389229.1 3606866 R 441771 CDS YP_001389230.1 153934529 5399312 3608371..3608769 1 NC_009698.1 hypothetical protein 3608769 5399312 CLC_3455 Clostridium botulinum A str. Hall hypothetical protein YP_001389230.1 3608371 D 441771 CDS YP_001389231.1 153935579 5399170 complement(3608801..3609862) 1 NC_009698.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 3609862 5399170 CLC_3456 Clostridium botulinum A str. Hall DNA integrity scanning protein DisA YP_001389231.1 3608801 R 441771 CDS YP_001389232.1 153935484 5399755 complement(3609881..3611239) 1 NC_009698.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 3611239 radA 5399755 radA Clostridium botulinum A str. Hall DNA repair protein RadA YP_001389232.1 3609881 R 441771 CDS YP_001389233.1 153936468 5398415 complement(3611359..3613794) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence MecB/ClpC 3613794 clpC 5398415 clpC Clostridium botulinum A str. Hall negative regulator of genetic competence MecB/ClpC YP_001389233.1 3611359 R 441771 CDS YP_001389234.1 153937148 5398950 complement(3613796..3614839) 1 NC_009698.1 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 3614839 5398950 CLC_3459 Clostridium botulinum A str. Hall ATP:guanido phosphotransferase YP_001389234.1 3613796 R 441771 CDS YP_001389235.1 153936590 5398929 complement(3614844..3615371) 1 NC_009698.1 identified by match to protein family HMM PF02151; UVR domain-containing protein 3615371 5398929 CLC_3460 Clostridium botulinum A str. Hall UVR domain-containing protein YP_001389235.1 3614844 R 441771 CDS YP_001389236.1 153937768 5399877 complement(3615394..3615858) 1 NC_009698.1 identified by match to protein family HMM PF05848; transciptional repressor CtsR 3615858 ctsR 5399877 ctsR Clostridium botulinum A str. Hall transciptional repressor CtsR YP_001389236.1 3615394 R 441771 CDS YP_001389237.1 153934533 5400770 complement(3616254..3616484) 1 NC_009698.1 hypothetical protein 3616484 5400770 CLC_3462 Clostridium botulinum A str. Hall hypothetical protein YP_001389237.1 3616254 R 441771 CDS YP_001389238.1 153936429 5401680 complement(3616831..3618903) 1 NC_009698.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3618903 fusA-2 5401680 fusA-2 Clostridium botulinum A str. Hall elongation factor G YP_001389238.1 3616831 R 441771 CDS YP_001389239.1 153936485 5401528 complement(3629919..3631295) 1 NC_009698.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 3631295 murD 5401528 murD Clostridium botulinum A str. Hall UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001389239.1 3629919 R 441771 CDS YP_001389240.1 153935948 5401527 complement(3632121..3633512) 1 NC_009698.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 3633512 glyS 5401527 glyS Clostridium botulinum A str. Hall glycyl-tRNA synthetase YP_001389240.1 3632121 R 441771 CDS YP_001389241.1 153936702 5399625 complement(3633832..3635346) 1 NC_009698.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3635346 lysS 5399625 lysS Clostridium botulinum A str. Hall lysyl-tRNA synthetase YP_001389241.1 3633832 R 441771 CDS YP_001389242.1 153937864 5401310 complement(3635365..3635847) 1 NC_009698.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3635847 greA 5401310 greA Clostridium botulinum A str. Hall transcription elongation factor GreA YP_001389242.1 3635365 R 441771 CDS YP_001389243.1 153934551 5399110 complement(3635978..3636805) 1 NC_009698.1 hypothetical protein 3636805 5399110 CLC_3484 Clostridium botulinum A str. Hall hypothetical protein YP_001389243.1 3635978 R 441771 CDS YP_001389244.1 153935504 5400764 complement(3636855..3637826) 1 NC_009698.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; dihydrouridine synthase 3637826 5400764 CLC_3485 Clostridium botulinum A str. Hall dihydrouridine synthase YP_001389244.1 3636855 R 441771 CDS YP_001389245.1 153936406 5401492 complement(3637836..3638612) 1 NC_009698.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 3638612 5401492 CLC_3486 Clostridium botulinum A str. Hall pantothenate kinase YP_001389245.1 3637836 R 441771 CDS YP_001389246.1 153937392 5400453 complement(3638767..3640440) 1 NC_009698.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 3640440 fhs 5400453 fhs Clostridium botulinum A str. Hall formate--tetrahydrofolate ligase YP_001389246.1 3638767 R 441771 CDS YP_001389247.1 153937590 5401272 complement(3640643..3642448) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 3642448 ftsH-2 5401272 ftsH-2 Clostridium botulinum A str. Hall ATP-dependent metalloprotease FtsH YP_001389247.1 3640643 R 441771 CDS YP_001389248.1 153937274 5399984 complement(3642530..3643075) 1 NC_009698.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 3643075 hpt-2 5399984 hpt-2 Clostridium botulinum A str. Hall hypoxanthine phosphoribosyltransferase YP_001389248.1 3642530 R 441771 CDS YP_001389249.1 153936096 5399480 complement(3643059..3644465) 1 NC_009698.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 3644465 tilS 5399480 tilS Clostridium botulinum A str. Hall tRNA(Ile)-lysidine synthetase YP_001389249.1 3643059 R 441771 CDS YP_001389250.1 153935483 5400434 complement(3644614..3647001) 1 NC_009698.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865; stage II sporulation protein E 3647001 spoIIE 5400434 spoIIE Clostridium botulinum A str. Hall stage II sporulation protein E YP_001389250.1 3644614 R 441771 CDS YP_001389251.1 153934848 5398632 complement(3648265..3648669) 1 NC_009698.1 identified by match to protein family HMM PF00575; hypothetical protein 3648669 5398632 CLC_3507 Clostridium botulinum A str. Hall hypothetical protein YP_001389251.1 3648265 R 441771 CDS YP_001389252.1 153937314 5399286 complement(3648731..3649000) 1 NC_009698.1 identified by match to protein family HMM PF04977; cell division protein FtsL 3649000 5399286 CLC_3508 Clostridium botulinum A str. Hall cell division protein FtsL YP_001389252.1 3648731 R 441771 CDS YP_001389253.1 153937634 5399161 complement(3649095..3649493) 1 NC_009698.1 identified by match to protein family HMM TIGR02893; hypothetical protein 3649493 5399161 CLC_3509 Clostridium botulinum A str. Hall hypothetical protein YP_001389253.1 3649095 R 441771 CDS YP_001389254.1 153934687 5398939 complement(3649508..3649798) 1 NC_009698.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892; sporulation protein YabP 3649798 yabP 5398939 yabP Clostridium botulinum A str. Hall sporulation protein YabP YP_001389254.1 3649508 R 441771 CDS YP_001389255.1 153937699 5401569 complement(3649918..3650157) 1 NC_009698.1 identified by match to protein family HMM PF01479; S4 domain-containing protein 3650157 5401569 CLC_3511 Clostridium botulinum A str. Hall S4 domain-containing protein YP_001389255.1 3649918 R 441771 CDS YP_001389256.1 153937038 5399434 complement(3650231..3650509) 1 NC_009698.1 identified by match to protein family HMM PF00216; DNA-binding protein HU 3650509 hup 5399434 hup Clostridium botulinum A str. Hall DNA-binding protein HU YP_001389256.1 3650231 R 441771 CDS YP_001389257.1 153937742 5401591 complement(3650637..3652082) 1 NC_009698.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 3652082 5401591 CLC_3513 Clostridium botulinum A str. Hall MazG family protein YP_001389257.1 3650637 R 441771 CDS YP_001389258.1 153936626 5400737 complement(3652097..3653632) 1 NC_009698.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; stage V sporulation protein B 3653632 spoVB-2 5400737 spoVB-2 Clostridium botulinum A str. Hall stage V sporulation protein B YP_001389258.1 3652097 R 441771 CDS YP_001389259.1 153935884 5399304 complement(3653765..3654316) 1 NC_009698.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851; stage V sporulation protein T 3654316 5399304 CLC_3515 Clostridium botulinum A str. Hall stage V sporulation protein T YP_001389259.1 3653765 R 441771 CDS YP_001389260.1 153935960 5400827 complement(3654515..3655525) 1 NC_009698.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidyl-prolyl isomerase 3655525 prsA 5400827 prsA Clostridium botulinum A str. Hall peptidyl-prolyl isomerase YP_001389260.1 3654515 R 441771 CDS YP_001389261.1 153937373 5399555 complement(3655609..3659115) 1 NC_009698.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 3659115 mfd 5399555 mfd Clostridium botulinum A str. Hall transcription-repair coupling factor YP_001389261.1 3655609 R 441771 CDS YP_001389262.1 153936610 5399037 complement(3659143..3659712) 1 NC_009698.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 3659712 pth 5399037 pth Clostridium botulinum A str. Hall peptidyl-tRNA hydrolase YP_001389262.1 3659143 R 441771 CDS YP_001389263.1 153935374 5400305 complement(3659822..3660994) 1 NC_009698.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00595; protease 3660994 5400305 CLC_3519 Clostridium botulinum A str. Hall protease YP_001389263.1 3659822 R 441771 CDS YP_001389264.1 153934677 5400257 complement(3661029..3662438) 1 NC_009698.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3662438 5400257 CLC_3520 Clostridium botulinum A str. Hall sensor histidine kinase YP_001389264.1 3661029 R 441771 CDS YP_001389265.1 153937839 5399700 complement(3662439..3663125) 1 NC_009698.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3663125 5399700 CLC_3521 Clostridium botulinum A str. Hall DNA-binding response regulator YP_001389265.1 3662439 R 441771 CDS YP_001389266.1 153936921 5399260 complement(3663305..3664264) 1 NC_009698.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 3664264 prs 5399260 prs Clostridium botulinum A str. Hall ribose-phosphate pyrophosphokinase YP_001389266.1 3663305 R 441771 CDS YP_001389267.1 153937100 5399224 complement(3664285..3665658) 1 NC_009698.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 3665658 glmU 5399224 glmU Clostridium botulinum A str. Hall bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001389267.1 3664285 R 441771 CDS YP_001389268.1 153936372 5398429 complement(3665820..3666107) 1 NC_009698.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 3666107 spoVG 5398429 spoVG Clostridium botulinum A str. Hall regulatory protein SpoVG YP_001389268.1 3665820 R 441771 CDS YP_001389269.1 153935566 5400892 complement(3666210..3667025) 1 NC_009698.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743; pur operon repressor 3667025 purR 5400892 purR Clostridium botulinum A str. Hall pur operon repressor YP_001389269.1 3666210 R 441771 CDS YP_001389270.1 153934724 5400532 3667225..3668601 1 NC_009698.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 3668601 murC 5400532 murC Clostridium botulinum A str. Hall UDP-N-acetylmuramate--L-alanine ligase YP_001389270.1 3667225 D 441771 CDS YP_001389271.1 153937220 5401387 3668666..3668974 1 NC_009698.1 hypothetical protein 3668974 5401387 CLC_3527 Clostridium botulinum A str. Hall hypothetical protein YP_001389271.1 3668666 D 441771 CDS YP_001389272.1 153936232 5399331 3669220..3670569 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02906; [Fe] hydrogenase 3670569 5399331 CLC_3530 Clostridium botulinum A str. Hall [Fe] hydrogenase YP_001389272.1 3669220 D 441771 CDS YP_001389273.1 153936036 5401066 3670655..3671299 1 NC_009698.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; haloacid dehalogenase 3671299 5401066 CLC_3531 Clostridium botulinum A str. Hall haloacid dehalogenase YP_001389273.1 3670655 D 441771 CDS YP_001389274.1 153935122 5398948 3671574..3671972 1 NC_009698.1 hypothetical protein 3671972 5398948 CLC_3532 Clostridium botulinum A str. Hall hypothetical protein YP_001389274.1 3671574 D 441771 CDS YP_001389275.1 153937592 5399856 complement(3672039..3672758) 1 NC_009698.1 catalyzes the formation of (2R)-3-sulfolactate from (2R)-2-phospho-3-sulfolactate; 2-phosphosulfolactate phosphatase 3672758 5399856 CLC_3533 Clostridium botulinum A str. Hall 2-phosphosulfolactate phosphatase YP_001389275.1 3672039 R 441771 CDS YP_001389276.1 153936949 5401154 complement(3672803..3673735) 1 NC_009698.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 3673735 5401154 CLC_3534 Clostridium botulinum A str. Hall radical SAM family protein YP_001389276.1 3672803 R 441771 CDS YP_001389277.1 153935689 5399482 complement(3673803..3674939) 1 NC_009698.1 phage head-tail adaptor 3674939 5399482 CLC_3535 Clostridium botulinum A str. Hall phage head-tail adaptor YP_001389277.1 3673803 R 441771 CDS YP_001389278.1 153934725 5400872 3675079..3676125 1 NC_009698.1 hypothetical protein 3676125 5400872 CLC_3536 Clostridium botulinum A str. Hall hypothetical protein YP_001389278.1 3675079 D 441771 CDS YP_001389279.1 153935210 5400807 3676158..3677054 1 NC_009698.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 3677054 5400807 CLC_3537 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001389279.1 3676158 D 441771 CDS YP_001389280.1 153936306 5400852 complement(3677197..3678993) 1 NC_009698.1 identified by match to protein family HMM PF00015; match to protein family HMM PF07700; methyl-accepting chemotaxis protein 3678993 5400852 CLC_3538 Clostridium botulinum A str. Hall methyl-accepting chemotaxis protein YP_001389280.1 3677197 R 441771 CDS YP_001389281.1 153936871 5400725 complement(3679296..3679958) 1 NC_009698.1 identified by match to protein family HMM PF01381; DNA-binding protein 3679958 5400725 CLC_3539 Clostridium botulinum A str. Hall DNA-binding protein YP_001389281.1 3679296 R 441771 CDS YP_001389282.1 153936127 5400198 complement(3679973..3680347) 1 NC_009698.1 hypothetical protein 3680347 5400198 CLC_3540 Clostridium botulinum A str. Hall hypothetical protein YP_001389282.1 3679973 R 441771 CDS YP_001389283.1 153934987 5400269 complement(3680365..3680883) 1 NC_009698.1 identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase 3680883 5400269 CLC_3541 Clostridium botulinum A str. Hall cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001389283.1 3680365 R 441771 CDS YP_001389284.1 153937684 5398350 complement(3681030..3681803) 1 NC_009698.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 3681803 murI 5398350 murI Clostridium botulinum A str. Hall glutamate racemase YP_001389284.1 3681030 R 441771 CDS YP_001389285.1 153936517 5398311 3681996..3683894 1 NC_009698.1 identified by match to protein family HMM PF00120; glutamine synthetase 3683894 5398311 CLC_3543 Clostridium botulinum A str. Hall glutamine synthetase YP_001389285.1 3681996 D 441771 CDS YP_001389286.1 153935789 5401708 complement(3683939..3684487) 1 NC_009698.1 hypothetical protein 3684487 5401708 CLC_3544 Clostridium botulinum A str. Hall hypothetical protein YP_001389286.1 3683939 R 441771 CDS YP_001389287.1 153935056 5400883 3684883..3686136 1 NC_009698.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3686136 murA-2 5400883 murA-2 Clostridium botulinum A str. Hall UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001389287.1 3684883 D 441771 CDS YP_001389288.1 153937263 5400639 3686162..3686947 1 NC_009698.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 3686947 5400639 CLC_3546 Clostridium botulinum A str. Hall metallo-beta-lactamase YP_001389288.1 3686162 D 441771 CDS YP_001389289.1 153936537 5399868 3686964..3687533 1 NC_009698.1 lipoprotein 3687533 5399868 CLC_3547 Clostridium botulinum A str. Hall lipoprotein YP_001389289.1 3686964 D 441771 CDS YP_001389290.1 153935921 5398663 3687548..3688051 1 NC_009698.1 identified by match to protein family HMM PF02810; hypothetical protein 3688051 5398663 CLC_3548 Clostridium botulinum A str. Hall hypothetical protein YP_001389290.1 3687548 D 441771 CDS YP_001389291.1 153936438 5400561 3688230..3688709 1 NC_009698.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3688709 5400561 CLC_3549 Clostridium botulinum A str. Hall rRNA large subunit methyltransferase YP_001389291.1 3688230 D 441771 CDS YP_001389292.1 153934469 5399310 complement(3689528..3690754) 1 NC_009698.1 identified by match to protein family HMM PF07690; major facilitator family protein 3690754 5399310 CLC_3551 Clostridium botulinum A str. Hall major facilitator family protein YP_001389292.1 3689528 R 441771 CDS YP_001389293.1 153936193 5401436 complement(3690790..3691425) 1 NC_009698.1 identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase 3691425 5401436 CLC_3552 Clostridium botulinum A str. Hall NADPH-dependent FMN reductase YP_001389293.1 3690790 R 441771 CDS YP_001389294.1 153937187 5400084 3691718..3692290 1 NC_009698.1 identified by match to protein family HMM PF00440; match to protein family HMM PF02796; TetR family transcriptional regulator 3692290 5400084 CLC_3553 Clostridium botulinum A str. Hall TetR family transcriptional regulator YP_001389294.1 3691718 D 441771 CDS YP_001389295.1 153937720 5398877 3692537..3692923 1 NC_009698.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 3692923 5398877 CLC_3554 Clostridium botulinum A str. Hall AraC family transcriptional regulator YP_001389295.1 3692537 D 441771 CDS YP_001389296.1 153935178 5398852 3692955..3693830 1 NC_009698.1 identified by match to protein family HMM PF00557; match to protein family HMM PF02810; match to protein family HMM TIGR00500; methionine aminopeptidase 3693830 map-2 5398852 map-2 Clostridium botulinum A str. Hall methionine aminopeptidase YP_001389296.1 3692955 D 441771 CDS YP_001389297.1 153936929 5401686 complement(3693920..3694459) 1 NC_009698.1 identified by match to protein family HMM PF00881; nitroreductase 3694459 5401686 CLC_3556 Clostridium botulinum A str. Hall nitroreductase YP_001389297.1 3693920 R 441771 CDS YP_001389298.1 153937481 5399541 3695161..3696657 1 NC_009698.1 hypothetical protein 3696657 5399541 CLC_3557 Clostridium botulinum A str. Hall hypothetical protein YP_001389298.1 3695161 D 441771 CDS YP_001389299.1 153937401 5401143 3696650..3697486 1 NC_009698.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04055; radical SAM domain-containing protein 3697486 5401143 CLC_3558 Clostridium botulinum A str. Hall radical SAM domain-containing protein YP_001389299.1 3696650 D 441771 CDS YP_001389300.1 153934565 5399236 3697902..3698153 1 NC_009698.1 hypothetical protein 3698153 5399236 CLC_3559 Clostridium botulinum A str. Hall hypothetical protein YP_001389300.1 3697902 D 441771 CDS YP_001389301.1 153935870 5401435 3698156..3699202 1 NC_009698.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 3699202 5401435 CLC_3560 Clostridium botulinum A str. Hall biotin synthase YP_001389301.1 3698156 D 441771 CDS YP_001389302.1 153936420 5399293 3699203..3700579 1 NC_009698.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 3700579 thiH 5399293 thiH Clostridium botulinum A str. Hall thiamine biosynthesis protein ThiH YP_001389302.1 3699203 D 441771 CDS YP_001389303.1 153934957 5401237 3700588..3701787 1 NC_009698.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein 3701787 5401237 CLC_3562 Clostridium botulinum A str. Hall GTP-binding protein YP_001389303.1 3700588 D 441771 CDS YP_001389304.1 153935933 5399599 3702102..3703475 1 NC_009698.1 identified by match to protein family HMM PF00474; sodium:solute symporter family protein 3703475 5399599 CLC_3563 Clostridium botulinum A str. Hall sodium:solute symporter family protein YP_001389304.1 3702102 D 441771 CDS YP_001389305.1 153935463 5398368 3703775..3705019 1 NC_009698.1 identified by match to protein family HMM PF00534; glycoside hydrolase family protein 3705019 5398368 CLC_3564 Clostridium botulinum A str. Hall glycoside hydrolase family protein YP_001389305.1 3703775 D 441771 CDS YP_001389306.1 153937841 5401373 complement(3705181..3705858) 1 NC_009698.1 identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 3705858 5401373 CLC_3565 Clostridium botulinum A str. Hall phosphotransferase domain-containing protein YP_001389306.1 3705181 R 441771 CDS YP_001389307.1 153936245 5401063 3706154..3706639 1 NC_009698.1 identified by match to protein family HMM PF08761; hypothetical protein 3706639 5401063 CLC_3566 Clostridium botulinum A str. Hall hypothetical protein YP_001389307.1 3706154 D 441771 CDS YP_001389308.1 153937251 5399226 3706746..3707177 1 NC_009698.1 identified by match to protein family HMM PF04657; hypothetical protein 3707177 5399226 CLC_3567 Clostridium botulinum A str. Hall hypothetical protein YP_001389308.1 3706746 D 441771 CDS YP_001389309.1 153937828 5398281 3707358..3708263 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3708263 5398281 CLC_3568 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001389309.1 3707358 D 441771 CDS YP_001389310.1 153936881 5399145 3708351..3709547 1 NC_009698.1 identified by match to protein family HMM PF00082; subtilase 3709547 5399145 CLC_3569 Clostridium botulinum A str. Hall subtilase YP_001389310.1 3708351 D 441771 CDS YP_001389311.1 153935427 5400554 complement(3709582..3710463) 1 NC_009698.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 3710463 5400554 CLC_3570 Clostridium botulinum A str. Hall LysR family transcriptional regulator YP_001389311.1 3709582 R 441771 CDS YP_001389312.1 153934478 5399390 complement(3710492..3711439) 1 NC_009698.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase 3711439 5399390 CLC_3571 Clostridium botulinum A str. Hall D-isomer specific 2-hydroxyacid dehydrogenase YP_001389312.1 3710492 R 441771 CDS YP_001389313.1 153936461 5400018 complement(3711639..3712478) 1 NC_009698.1 identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3712478 accA 5400018 accA Clostridium botulinum A str. Hall acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_001389313.1 3711639 R 441771 CDS YP_001389314.1 153935465 5401602 complement(3712525..3713394) 1 NC_009698.1 identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 3713394 accD 5401602 accD Clostridium botulinum A str. Hall acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_001389314.1 3712525 R 441771 CDS YP_001389315.1 153935939 5401178 complement(3713414..3714760) 1 NC_009698.1 identified by match to protein family HMM PF00289; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM PF08443; match to protein family HMM TIGR00514; biotin carboxylase 3714760 accC 5401178 accC Clostridium botulinum A str. Hall biotin carboxylase YP_001389315.1 3713414 R 441771 CDS YP_001389316.1 153934998 5399410 complement(3714792..3715226) 1 NC_009698.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3715226 fabZ 5399410 fabZ Clostridium botulinum A str. Hall (3R)-hydroxymyristoyl-ACP dehydratase YP_001389316.1 3714792 R 441771 CDS YP_001389317.1 153934511 5398569 complement(3715246..3715722) 1 NC_009698.1 identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein 3715722 accB 5398569 accB Clostridium botulinum A str. Hall acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001389317.1 3715246 R 441771 CDS YP_001389318.1 153937832 5399841 complement(3715726..3716964) 1 NC_009698.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 3716964 fabF 5399841 fabF Clostridium botulinum A str. Hall 3-oxoacyl-ACP synthase YP_001389318.1 3715726 R 441771 CDS YP_001389319.1 153936263 5401410 complement(3716984..3717730) 1 NC_009698.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 3717730 fabG 5401410 fabG Clostridium botulinum A str. Hall 3-ketoacyl-ACP reductase YP_001389319.1 3716984 R 441771 CDS YP_001389320.1 153937434 5398978 complement(3717748..3718692) 1 NC_009698.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 3718692 fabD 5398978 fabD Clostridium botulinum A str. Hall malonyl CoA-acyl carrier protein transacylase YP_001389320.1 3717748 R 441771 CDS YP_001389321.1 153934946 5400349 complement(3718713..3719639) 1 NC_009698.1 identified by match to protein family HMM PF03060; match to protein family HMM TIGR03151; 2-nitropropane dioxygenase 3719639 5400349 CLC_3580 Clostridium botulinum A str. Hall 2-nitropropane dioxygenase YP_001389321.1 3718713 R 441771 CDS YP_001389322.1 153935883 5398388 complement(3719765..3719989) 1 NC_009698.1 identified by match to protein family HMM PF00550; acyl carrier protein 3719989 acpP-2 5398388 acpP-2 Clostridium botulinum A str. Hall acyl carrier protein YP_001389322.1 3719765 R 441771 CDS YP_001389323.1 153937617 5401735 complement(3720030..3721010) 1 NC_009698.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase 3721010 fabH 5401735 fabH Clostridium botulinum A str. Hall 3-oxoacyl-ACP synthase YP_001389323.1 3720030 R 441771 CDS YP_001389324.1 153937291 5399554 complement(3721003..3721479) 1 NC_009698.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965; MarR family transcriptional regulator 3721479 5399554 CLC_3583 Clostridium botulinum A str. Hall MarR family transcriptional regulator YP_001389324.1 3721003 R 441771 CDS YP_001389325.1 153934532 5399995 complement(3721495..3722553) 1 NC_009698.1 identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 3722553 5399995 CLC_3584 Clostridium botulinum A str. Hall 2-nitropropane dioxygenase YP_001389325.1 3721495 R 441771 CDS YP_001389326.1 153935479 5399760 complement(3722650..3723585) 1 NC_009698.1 identified by match to protein family HMM PF01551; peptidase 3723585 5399760 CLC_3585 Clostridium botulinum A str. Hall peptidase YP_001389326.1 3722650 R 441771 CDS YP_001389327.1 153937218 5400480 3723766..3724752 1 NC_009698.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 3724752 5400480 CLC_3586 Clostridium botulinum A str. Hall DNA replication protein DnaD YP_001389327.1 3723766 D 441771 CDS YP_001389328.1 153935133 5400393 3724745..3725722 1 NC_009698.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3725722 5400393 CLC_3587 Clostridium botulinum A str. Hall DNA replication protein DnaC YP_001389328.1 3724745 D 441771 CDS YP_001389332.1 153935609 5398898 complement(3726968..3727777) 1 NC_009698.1 identified by match to protein family HMM PF03618; hypothetical protein 3727777 5398898 CLC_3610 Clostridium botulinum A str. Hall hypothetical protein YP_001389332.1 3726968 R 441771 CDS YP_001389333.1 153934808 5401307 complement(3727790..3728164) 1 NC_009698.1 identified by match to protein family HMM PF02629; CoA-binding protein 3728164 5401307 CLC_3611 Clostridium botulinum A str. Hall CoA-binding protein YP_001389333.1 3727790 R 441771 CDS YP_001389334.1 153936648 5400551 3728345..3729574 1 NC_009698.1 identified by match to protein family HMM PF03486; match to protein family HMM TIGR00275; pyridine nucleotide-disulfide oxidoreductase 3729574 5400551 CLC_3612 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001389334.1 3728345 D 441771 CDS YP_001389335.1 153936157 5400462 complement(3729676..3730425) 1 NC_009698.1 identified by match to protein family HMM PF01643; acyl-ACP thioesterase 3730425 5400462 CLC_3613 Clostridium botulinum A str. Hall acyl-ACP thioesterase YP_001389335.1 3729676 R 441771 CDS YP_001389336.1 153935121 5398630 complement(3730528..3730713) 1 NC_009698.1 hypothetical protein 3730713 5398630 CLC_3614 Clostridium botulinum A str. Hall hypothetical protein YP_001389336.1 3730528 R 441771 CDS YP_001389337.1 153937203 5400815 complement(3730839..3732125) 1 NC_009698.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3732125 purA 5400815 purA Clostridium botulinum A str. Hall adenylosuccinate synthetase YP_001389337.1 3730839 R 441771 CDS YP_001389338.1 153936189 5401153 complement(3732357..3733742) 1 NC_009698.1 identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 3733742 5401153 CLC_3616 Clostridium botulinum A str. Hall pyridine nucleotide-disulfide oxidoreductase YP_001389338.1 3732357 R 441771 CDS YP_001389339.1 153937239 5400637 complement(3733908..3734123) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3734123 5400637 CLC_3617 Clostridium botulinum A str. Hall hypothetical protein YP_001389339.1 3733908 R 441771 CDS YP_001389340.1 153936275 5401020 complement(3734316..3736037) 1 NC_009698.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 3736037 5401020 CLC_3618 Clostridium botulinum A str. Hall phosphoglucomutase/phosphomannomutase YP_001389340.1 3734316 R 441771 CDS YP_001389341.1 153935825 5399789 complement(3736279..3737616) 1 NC_009698.1 unwinds double stranded DNA; replicative DNA helicase 3737616 dnaB 5399789 dnaB Clostridium botulinum A str. Hall replicative DNA helicase YP_001389341.1 3736279 R 441771 CDS YP_001389342.1 153936586 5400825 complement(3737647..3739566) 1 NC_009698.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR02903; ATP-dependent protease 3739566 5400825 CLC_3620 Clostridium botulinum A str. Hall ATP-dependent protease YP_001389342.1 3737647 R 441771 CDS YP_001389343.1 153937697 5400314 complement(3739577..3740020) 1 NC_009698.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3740020 rplI 5400314 rplI Clostridium botulinum A str. Hall 50S ribosomal protein L9 YP_001389343.1 3739577 R 441771 CDS YP_001389344.1 153935011 5398336 complement(3740020..3742005) 1 NC_009698.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH family protein 3742005 5398336 CLC_3622 Clostridium botulinum A str. Hall DHH family protein YP_001389344.1 3740020 R 441771 CDS YP_001389345.1 153936501 5399399 complement(3742006..3743010) 1 NC_009698.1 hypothetical protein 3743010 5399399 CLC_3623 Clostridium botulinum A str. Hall hypothetical protein YP_001389345.1 3742006 R 441771 CDS YP_001389346.1 153937428 5400368 complement(3743022..3743339) 1 NC_009698.1 hypothetical protein 3743339 5400368 CLC_3624 Clostridium botulinum A str. Hall hypothetical protein YP_001389346.1 3743022 R 441771 CDS YP_001389347.1 153934477 5399043 complement(3743487..3743729) 1 NC_009698.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3743729 rpsR 5399043 rpsR Clostridium botulinum A str. Hall 30S ribosomal protein S18 YP_001389347.1 3743487 R 441771 CDS YP_001389348.1 153935512 5399174 complement(3743748..3744194) 1 NC_009698.1 identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 3744194 ssb 5399174 ssb Clostridium botulinum A str. Hall single-strand binding protein YP_001389348.1 3743748 R 441771 CDS YP_001389349.1 153934983 5398649 complement(3744210..3744494) 1 NC_009698.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3744494 rpsF 5398649 rpsF Clostridium botulinum A str. Hall 30S ribosomal protein S6 YP_001389349.1 3744210 R 441771 CDS YP_001389350.1 153935994 5400159 complement(3744600..3745748) 1 NC_009698.1 identified by match to protein family HMM PF06050; R-2-hydroxyglutaryl-CoA dehydratase subunit 3745748 5400159 CLC_3628 Clostridium botulinum A str. Hall R-2-hydroxyglutaryl-CoA dehydratase subunit YP_001389350.1 3744600 R 441771 CDS YP_001389351.1 153934912 5399567 complement(3746022..3746219) 1 NC_009698.1 identified by match to protein family HMM PF06107; hypothetical protein 3746219 5399567 CLC_3629 Clostridium botulinum A str. Hall hypothetical protein YP_001389351.1 3746022 R 441771 CDS YP_001389352.1 153935837 5399047 complement(3746235..3747104) 1 NC_009698.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein 3747104 5399047 CLC_3630 Clostridium botulinum A str. Hall mechanosensitive ion channel family protein YP_001389352.1 3746235 R 441771 CDS YP_001389353.1 153937021 5401531 complement(3747111..3747356) 1 NC_009698.1 hypothetical protein 3747356 5401531 CLC_3631 Clostridium botulinum A str. Hall hypothetical protein YP_001389353.1 3747111 R 441771 CDS YP_001389354.1 153937780 5398382 3747547..3748701 1 NC_009698.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977; cysteine desulfurase 3748701 5398382 CLC_3632 Clostridium botulinum A str. Hall cysteine desulfurase YP_001389354.1 3747547 D 441771 CDS YP_001389355.1 153934624 5400119 3748715..3749770 1 NC_009698.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872; sporulation integral membrane protein YtvI 3749770 ytvI 5400119 ytvI Clostridium botulinum A str. Hall sporulation integral membrane protein YtvI YP_001389355.1 3748715 D 441771 CDS YP_001389356.1 153935338 5398727 3749828..3750409 1 NC_009698.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841; hypothetical protein 3750409 5398727 CLC_3634 Clostridium botulinum A str. Hall hypothetical protein YP_001389356.1 3749828 D 441771 CDS YP_001389357.1 153936495 5401761 complement(3750411..3750656) 1 NC_009698.1 identified by Glimmer3; hypothetical protein 3750656 5401761 CLC_3635 Clostridium botulinum A str. Hall hypothetical protein YP_001389357.1 3750411 R 441771 CDS YP_001389358.1 153937259 5399778 complement(3750709..3751218) 1 NC_009698.1 hypothetical protein 3751218 5399778 CLC_3636 Clostridium botulinum A str. Hall hypothetical protein YP_001389358.1 3750709 R 441771 CDS YP_001389359.1 153936521 5401827 complement(3751256..3752104) 1 NC_009698.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 3752104 5401827 CLC_3637 Clostridium botulinum A str. Hall stage 0 sporulation protein J YP_001389359.1 3751256 R 441771 CDS YP_001389360.1 153937312 5399506 complement(3752120..3752884) 1 NC_009698.1 identified by match to protein family HMM PF01656; sporulation initiation inhibitor protein soj 3752884 soj 5399506 soj Clostridium botulinum A str. Hall sporulation initiation inhibitor protein soj YP_001389360.1 3752120 R 441771 CDS YP_001389361.1 153935202 5401587 complement(3753011..3753790) 1 NC_009698.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; parB family protein 3753790 5401587 CLC_3639 Clostridium botulinum A str. Hall parB family protein YP_001389361.1 3753011 R 441771 CDS YP_001389362.1 153936099 5399247 complement(3753890..3754609) 1 NC_009698.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3754609 gidB 5399247 gidB Clostridium botulinum A str. Hall 16S rRNA methyltransferase GidB YP_001389362.1 3753890 R 441771 CDS YP_001389363.1 153936277 5401000 complement(3754633..3756510) 1 NC_009698.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3756510 gidA-2 5401000 gidA-2 Clostridium botulinum A str. Hall tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001389363.1 3754633 R 441771 CDS YP_001389364.1 153937169 5399485 complement(3756519..3757904) 1 NC_009698.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3757904 trmE 5399485 trmE Clostridium botulinum A str. Hall tRNA modification GTPase TrmE YP_001389364.1 3756519 R 441771 CDS YP_001389365.1 153935750 5399497 complement(3757952..3758578) 1 NC_009698.1 identified by match to protein family HMM PF01424; jag protein 3758578 jag 5399497 jag Clostridium botulinum A str. Hall jag protein YP_001389365.1 3757952 R 441771 CDS YP_001389366.1 153936249 5400079 complement(3758596..3759249) 1 NC_009698.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 3759249 oxaA 5400079 oxaA Clostridium botulinum A str. Hall inner membrane protein translocase component YidC YP_001389366.1 3758596 R 441771 CDS YP_001389367.1 153936782 5399958 complement(3759275..3759484) 1 NC_009698.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 3759484 5399958 CLC_3645 Clostridium botulinum A str. Hall hypothetical protein YP_001389367.1 3759275 R 441771 CDS YP_001389368.1 153934757 5399118 complement(3759481..3759816) 1 NC_009698.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3759816 rnpA 5399118 rnpA Clostridium botulinum A str. Hall ribonuclease P YP_001389368.1 3759481 R 441771 CDS YP_001389369.1 153937692 5401123 complement(3759871..3760005) 1 NC_009698.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3760005 rpmH 5401123 rpmH Clostridium botulinum A str. Hall 50S ribosomal protein L34 YP_001389369.1 3759871 R 441771 CDS