-- dump date 20140619_041148 -- class Genbank::CDS -- table cds_note -- id note YP_001958471.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001958472.1 KEGG: pvi:Cvib_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_001958473.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: plt:Plut_0002 RecF protein YP_001958474.1 KEGG: cte:CT2287 hypothetical protein YP_001958475.1 PFAM: peptidase M50; KEGG: acl:ACL_1148 membrane-associated metallopeptidase, M50 family YP_001958476.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: pvi:Cvib_0005 beta-lactamase domain protein YP_001958477.1 PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cte:CT2284 DNA polymerase family B protein YP_001958478.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001958479.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0008 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit YP_001958480.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: pvi:Cvib_0009 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_001958481.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001958482.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001958483.1 KEGG: bvu:BVU_0426 hypothetical protein YP_001958484.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001958485.1 KEGG: plt:Plut_0010 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001958487.1 PFAM: protein of unknown function UPF0102; KEGG: pvi:Cvib_0014 hypothetical protein YP_001958488.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001958489.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: plt:Plut_0012 ribonuclease E and G YP_001958490.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_001958491.1 KEGG: cte:CT2258 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001958492.1 KEGG: cte:CT2257 hypothetical protein YP_001958493.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cte:CT2256 geranylgeranyl hydrogenase YP_001958494.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001958496.1 KEGG: pvi:Cvib_0850 hypothetical protein YP_001958497.1 PFAM: aminotransferase class V; KEGG: saq:Sare_2039 aminotransferase class V YP_001958498.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cte:CT2237 hypothetical protein YP_001958499.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cte:CT2236 muramoyltetrapeptide carboxypeptidase YP_001958500.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: plt:Plut_0020 ATP synthase F1, epsilon subunit YP_001958501.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001958502.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_0022 thiol:disulfide interchange protein, thioredoxin family protein YP_001958503.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_001958504.1 KEGG: dau:Daud_0760 hypothetical protein YP_001958505.1 PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein YP_001958507.1 KEGG: plt:Plut_0031 hypothetical protein YP_001958508.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: chy:CHY_1834 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC YP_001958509.1 KEGG: gbe:GbCGDNIH1_2299 ABC transporter permease protein YP_001958510.1 PFAM: sodium:neurotransmitter symporter; KEGG: pvi:Cvib_1274 sodium:neurotransmitter symporter YP_001958511.1 PFAM: RNA methylase; DNA methylase N-4/N-6 domain protein; KEGG: cch:Cag_1099 DNA modification methylase-like YP_001958512.1 KEGG: sat:SYN_02435 hypothetical cytosolic protein YP_001958513.1 PFAM: transposase IS4 family protein; KEGG: plt:Plut_0436 transposase-like YP_001958515.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001958516.1 PFAM: CHAP domain containing protein; KEGG: ssp:SSP0609 secretory antigen precursor YP_001958517.1 KEGG: gfo:GFO_2191 TonB-dependent outer membrane receptor YP_001958519.1 PFAM: cytochrome c class I; KEGG: cte:CT0075 cytochrome c-555 YP_001958521.1 PFAM: Integrase catalytic region; KEGG: plt:Plut_1830 transposase subunit YP_001958522.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: plt:Plut_1831 ATPase YP_001958523.1 KEGG: sco:SCO3294 transferase YP_001958524.1 KEGG: dar:Daro_1853 hypothetical protein YP_001958525.1 KEGG: syn:slr1767 hypothetical protein YP_001958526.1 PFAM: protein of unknown function DUF433; KEGG: ava:Ava_3038 protein of unknown function DUF433 YP_001958527.1 PFAM: PilT protein domain protein; KEGG: rpa:RPA1992 possible NtrR protein YP_001958528.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mba:Mbar_A1661 hypothetical protein YP_001958531.1 KEGG: aeh:Mlg_2346 ATPase (AAA+ superfamily)-like protein YP_001958532.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: cau:Caur_2869 nucleotidyltransferase substrate binding protein, HI0074 family YP_001958533.1 PFAM: DNA polymerase beta domain protein region; KEGG: cau:Caur_2868 DNA polymerase beta domain protein region YP_001958534.1 KEGG: lch:Lcho_4189 hypothetical protein YP_001958535.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sus:Acid_6997 ErfK/YbiS/YcfS/YnhG YP_001958536.1 KEGG: pvi:Cvib_1453 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_001958537.1 PFAM: Radical SAM domain protein; KEGG: cch:Cag_1591 hypothetical protein YP_001958538.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_001958539.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001958540.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001958541.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pvi:Cvib_1260 NADH dehydrogenase (quinone) YP_001958542.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001958543.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pvi:Cvib_1262 multiple resistance and pH regulation protein F YP_001958544.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pvi:Cvib_1263 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_001958545.1 KEGG: pvi:Cvib_0746 hypothetical protein YP_001958547.1 PFAM: protein of unknown function nitrogen fixation YP_001958549.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: gvi:glr1342 probable NADP(H) oxidoreductase YP_001958550.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: gvi:glr1343 glutathione-regulated potassium efflux system protein KefC homolog YP_001958551.1 PFAM: cation transporter; KEGG: dps:DP0723 trk system potassium uptake protein (TrkH) YP_001958552.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001958554.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: cte:CT0103 PilB-related protein YP_001958555.1 KEGG: cte:CT0116 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001958557.1 KEGG: cte:CT0121 potassium channel protein YP_001958558.1 PFAM: Ion transport 2 domain protein; KEGG: cte:CT0121 potassium channel protein YP_001958559.1 KEGG: pvi:Cvib_0135 hypothetical protein YP_001958560.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001958561.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: cte:CT0124 membrane-associated zinc metalloprotease YP_001958562.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001958563.1 PFAM: acylphosphatase; KEGG: cte:CT0126 acylphosphatase YP_001958564.1 KEGG: pvi:Cvib_0139 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001958565.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cte:CT0129 orotidine-5'-phosphate decarboxylase YP_001958566.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001958567.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; domain of unknown function DUF1731; KEGG: cte:CT0131 hypothetical protein YP_001958568.1 PFAM: Ferritin Dps family protein; KEGG: pvi:Cvib_1194 ferritin, Dps family protein YP_001958569.1 KEGG: vco:VC0395_0417 hypothetical protein YP_001958570.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cte:CT0132 RNA-binding protein YP_001958571.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_0089 ammonium transporter YP_001958572.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT0134 P-II family protein YP_001958573.1 PFAM: peptidase C1A papain; KEGG: pvi:Cvib_0165 peptidase C1A, papain YP_001958574.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0092 TPR repeat YP_001958575.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cte:CT0136 segregation and condensation protein A YP_001958576.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: mtp:Mthe_1530 methyltransferase type 11 YP_001958577.1 KEGG: mgi:Mflv_4523 hypothetical protein YP_001958578.1 KEGG: bcl:ABC1230 hypothetical protein YP_001958579.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mbn:Mboo_2337 DNA methylase N-4/N-6 domain protein YP_001958580.1 PFAM: restriction endonuclease XhoI; KEGG: dvu:DVUA0020 type II restriction endonuclease YP_001958581.1 KEGG: swo:Swol_0159 hypothetical protein YP_001958582.1 PFAM: conserved hypothetical protein; KEGG: plt:Plut_0094 hypothetical protein YP_001958583.1 PFAM: protein of unknown function UPF0079; KEGG: cte:CT0138 nucleotide-binding protein YP_001958584.1 PFAM: peptidase M22 glycoprotease; KEGG: plt:Plut_0096 protease YP_001958585.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pvi:Cvib_0171 iojap-like protein YP_001958586.1 KEGG: cch:Cag_0088 DNA gyrase, subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_001958587.1 SMART: zinc finger CDGSH-type domain protein; KEGG: plt:Plut_0099 Zn-finger, CDGSH type YP_001958588.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001958589.1 PFAM: ferrochelatase; KEGG: pvi:Cvib_1664 ferrochelatase YP_001958590.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pvi:Cvib_1006 PHP C-terminal domain protein YP_001958591.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: gur:Gura_2103 DNA topoisomerase, type IA, zn finger domain protein YP_001958592.1 KEGG: bmu:Bmul_2660 catalase/peroxidase HPI YP_001958593.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cch:Cag_1129 hypothetical protein YP_001958594.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase, catalytic region YP_001958595.1 PFAM: IstB domain protein ATP-binding protein; KEGG: gur:Gura_0558 IstB domain protein ATP-binding protein YP_001958596.1 KEGG: cch:Cag_1130 hypothetical protein YP_001958597.1 KEGG: plt:Plut_1918 hypothetical protein YP_001958598.1 KEGG: ppd:Ppro_0140 transposase, IS4 family protein YP_001958599.1 KEGG: tva:TVAG_110290 viral A-type inclusion protein, Pfam: XLF HSBP1 Baculo_PEP_C Ribosomal_LX EzrA Syntaxin Syntaxin-6_N TSC22 Rad50_zn_hook Spectrin Laminin_I Prefoldin THOC7 TBPIP Seryl_tRNA_N DUF593 DUF148 TACC PspA_IM30 Rab5-bind M Myosin_tail_1 Troponin Filament Tektin Tup_N Phage_GP20 GBP_C DUF827 MAP65_ASE1 Alpha-2-MRAP_C Fez1 BRE1 Prefoldin_2 FlgM Ribosomal_L30_N Laminin_II Microtub_assoc PROSITE: GLN_RICH GLU_RICH LYS_RICH YP_001958600.1 KEGG: plt:Plut_0979 hypothetical protein YP_001958601.1 PFAM: plasmid stabilization system; KEGG: plt:Plut_0980 protein of the plasmid stabilization system YP_001958602.1 PFAM: protein of unknown function DUF45; KEGG: ava:Ava_1155 metal-dependent hydrolase-like YP_001958603.1 KEGG: bmn:BMA10247_1541 hypothetical protein YP_001958604.1 KEGG: plt:Plut_1857 hypothetical protein YP_001958605.1 PFAM: Integrase catalytic region; KEGG: plt:Plut_1830 transposase subunit YP_001958606.1 KEGG: cch:Cag_1372 hypothetical protein YP_001958608.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: ppd:Ppro_1387 catalase/peroxidase HPI YP_001958609.1 PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins YP_001958610.1 KEGG: noc:Noc_1786 hypothetical protein YP_001958611.1 PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ppr:PBPRB0594 hypothetical protein YP_001958612.1 KEGG: pgi:PG0423 hypothetical protein YP_001958613.1 PFAM: protein of unknown function DUF1105; KEGG: pgi:PG0424 hypothetical protein YP_001958614.1 PFAM: thioesterase superfamily protein; KEGG: cte:CT2140 hypothetical protein YP_001958615.1 KEGG: cte:CT2138 hypothetical protein YP_001958616.1 PFAM: glycosyl transferase family 9; KEGG: plt:Plut_0112 heptosyltransferase YP_001958617.1 KEGG: cte:CT2136 AP (apurinic or apyrimidinic) endonuclease, Xth family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_001958618.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001958619.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pvi:Cvib_0182 single-strand binding protein YP_001958620.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001958621.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001958623.1 KEGG: pvi:Cvib_0185 hypothetical protein YP_001958624.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001958625.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001958626.1 PFAM: ribosomal protein L35; KEGG: cte:CT2128 50S ribosomal protein L35 YP_001958627.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001958628.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001958629.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: plt:Plut_0124 chlorophyllide reductase subunit Z YP_001958630.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT2124 beta-N-acetylglucosaminidase YP_001958631.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pvi:Cvib_0193 HNH endonuclease YP_001958632.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cte:CT2119 ribonuclease III YP_001958633.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: plt:Plut_0129 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001958634.1 carries the fatty acid chain in fatty acid biosynthesis YP_001958635.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein) reductase YP_001958636.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cte:CT2115 malonyl CoA-acyl carrier protein transacylase YP_001958637.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001958638.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001958639.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001958640.1 PFAM: protein of unknown function DUF177; KEGG: cte:CT2111 hypothetical protein YP_001958642.1 KEGG: bte:BTH_I2738 hypothetical protein YP_001958643.1 PFAM: restriction modification system DNA specificity domain; RNA methylase; N-6 DNA methylase; KEGG: mgi:Mflv_0805 N-6 DNA methylase YP_001958644.1 PFAM: helix-turn-helix domain protein; KEGG: ckl:CKL_2012 hypothetical protein YP_001958646.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: yen:YE3259 lipoprotein involved with copper homeostasis and adhesion YP_001958647.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cte:CT2107 2-isopropylmalate synthase YP_001958648.1 PFAM: ferric-uptake regulator; KEGG: gur:Gura_0045 ferric uptake regulator, Fur family YP_001958649.1 PFAM: periplasmic solute binding protein; KEGG: cte:CT2106 adhesion protein YP_001958650.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT2105 ABC transporter, ATP-binding protein YP_001958651.1 PFAM: ABC-3 protein; KEGG: plt:Plut_0141 ABC 3 transport family protein YP_001958652.1 KEGG: plt:Plut_1311 hypothetical protein YP_001958653.1 KEGG: plt:Plut_2041 hypothetical protein YP_001958654.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001958655.1 PFAM: protein of unknown function DUF190; KEGG: cte:CT2101 hypothetical protein YP_001958656.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001958657.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: pvi:Cvib_1680 DNA repair protein RecO YP_001958658.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: plt:Plut_2036 hypothetical protein YP_001958659.1 KEGG: cte:CT2096 hypothetical protein YP_001958660.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cte:CT2095 UDP-N-acetylglucosamine 2-epimerase YP_001958661.1 KEGG: mba:Mbar_A3002 hypothetical protein YP_001958662.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_3188 radical SAM domain protein YP_001958664.1 KEGG: rba:RB6865 hypothetical protein YP_001958665.1 PFAM: integrase family protein; KEGG: spc:Sputcn32_4000 phage integrase family protein YP_001958667.1 KEGG: son:SO_4046 hypothetical protein YP_001958669.1 KEGG: pdi:BDI_2985 excisionase YP_001958671.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: fps:FP0387 hypothetical protein YP_001958673.1 TIGRFAM: phage terminase, small subunit, , P27 family; PFAM: terminase small subunit P27; KEGG: sgl:SG0725 hypothetical protein YP_001958675.1 KEGG: dau:Daud_1704 hypothetical protein YP_001958676.1 PFAM: protein of unknown function DUF169; KEGG: mba:Mbar_A0516 hypothetical protein YP_001958677.1 KEGG: pin:Ping_0885 hypothetical protein YP_001958678.1 KEGG: mmw:Mmwyl1_0849 domain of unknown function DUF1814 YP_001958679.1 KEGG: plt:Plut_1790 hypothetical protein YP_001958680.1 PFAM: NLP/P60 protein; KEGG: plt:Plut_0897 NLP/P60 family protein YP_001958681.1 KEGG: csc:Csac_1518 hypothetical protein YP_001958682.1 PFAM: PilT protein domain protein; KEGG: gvi:gll2899 hypothetical protein YP_001958683.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bte:BTH_II0030 radical SAM domain/B12 binding domain protein YP_001958684.1 KEGG: pfa:PF10_0351 hypothetical protein YP_001958686.1 PFAM: Peptidase M23; KEGG: plt:Plut_2033 membrane proteins related to metalloendopeptidase-like YP_001958687.1 PFAM: metallophosphoesterase; KEGG: cte:CT2092 hypothetical protein YP_001958688.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: plt:Plut_2031 peptide chain release factor 2 YP_001958689.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT2089 alpha-amylase family protein YP_001958690.1 KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_001958691.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mta:Moth_0887 ATPase, E1-E2 type YP_001958692.1 KEGG: cte:CT2087 esterase/lipase YP_001958694.1 PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_1667 DNA polymerase, beta domain protein region YP_001958695.1 PFAM: protein of unknown function DUF86; KEGG: gme:Gmet_3258 protein of unknown function DUF86 YP_001958696.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_001958697.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT2085 oxidoreductase, short-chain dehydrogenase/reductase family YP_001958698.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001958699.1 KEGG: cte:CT1012 hypothetical protein YP_001958700.1 KEGG: cte:CT1935 holo-[acyl-carrier protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase YP_001958701.1 KEGG: maq:Maqu_2212 hypothetical protein YP_001958702.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: plt:Plut_2019 rare lipoprotein A YP_001958703.1 KEGG: cte:CT2070 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001958704.1 KEGG: pvi:Cvib_1658 hypothetical protein YP_001958705.1 KEGG: pvi:Cvib_1657 hypothetical protein YP_001958706.1 PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein YP_001958707.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0259 protein of unknown function DUF6 transmembrane YP_001958708.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cte:CT2065 hypothetical protein YP_001958709.1 PFAM: UbiE/COQ5 methyltransferase; Radical SAM domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_2089 methyltransferase YP_001958710.1 PFAM: bacteriochlorophyll C binding protein; KEGG: pvi:Cvib_0366 bacteriochlorophyll C binding protein YP_001958711.1 PFAM: Na+/solute symporter; KEGG: plt:Plut_2009 sodium:solute symporter family protein YP_001958712.1 PFAM: conserved hypothetical protein; KEGG: cte:CT2057 hypothetical protein YP_001958713.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT2056 mannose-1-phosphate guanylyltransferase YP_001958714.1 PFAM: aminoglycoside phosphotransferase; KEGG: cte:CT2055 hypothetical protein YP_001958715.1 KEGG: pvi:Cvib_0367 chlorosome envelope protein B YP_001958716.1 KEGG: pvi:Cvib_0368 hypothetical protein YP_001958717.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pvi:Cvib_0369 radical SAM domain protein YP_001958718.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: pvi:Cvib_0370 2-vinyl bacteriochlorophyllide hydratase YP_001958719.1 KEGG: pvi:Cvib_0371 hypothetical protein YP_001958720.1 KEGG: rpa:RPA2614 hypothetical protein YP_001958721.1 KEGG: dsy:DSY0169 hypothetical protein YP_001958722.1 KEGG: plt:Plut_1700 hypothetical protein YP_001958723.1 KEGG: cte:CT2051 hypothetical protein YP_001958724.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pvi:Cvib_0372 short-chain dehydrogenase/reductase SDR YP_001958725.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mac:MA2698 hypothetical protein YP_001958726.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_1587 alpha/beta hydrolase fold YP_001958727.1 PFAM: protein of unknown function DUF156; KEGG: cte:CT2050 hypothetical protein YP_001958728.1 PFAM: outer membrane efflux protein; KEGG: cch:Cag_0122 LipD protein YP_001958729.1 KEGG: pvi:Cvib_1643 hypothetical protein YP_001958730.1 PFAM: acriflavin resistance protein; KEGG: cch:Cag_0123 AcrB/AcrD/AcrF family protein YP_001958731.1 KEGG: plt:Plut_1998 hypothetical protein YP_001958732.1 PFAM: beta-lactamase domain protein; KEGG: plt:Plut_1997 hydroxyacylglutathione hydrolase YP_001958733.1 PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS YP_001958734.1 KEGG: cte:CT2042 succinate/fumarate oxidoreductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001958735.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: pvi:Cvib_1637 succinate dehydrogenase subunit B YP_001958736.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: plt:Plut_1993 succinate/fumarate oxidoreductase YP_001958737.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001958738.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: plt:Plut_1991 potassium channel protein YP_001958739.1 PFAM: UspA domain protein; KEGG: fjo:Fjoh_1627 UspA domain protein YP_001958740.1 TIGRFAM: phosphoheptose isomerase; KEGG: plt:Plut_1990 phosphoheptose isomerase YP_001958741.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001958742.1 KEGG: rso:RSc0451 probable transmembrane protein YP_001958743.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: stp:Strop_2703 alkylhydroperoxidase like protein, AhpD family YP_001958744.1 KEGG: cte:CT2036 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_001958745.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001958746.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001958747.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001958748.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_001958749.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_001958750.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cte:CT2029 competence/damage-inducible protein CinA YP_001958752.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: plt:Plut_1981 DNA mismatch repair protein YP_001958753.1 KEGG: pvi:Cvib_1623 cytochrome c, class I YP_001958754.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001958755.1 KEGG: plt:Plut_1976 photosystem P840 reaction center, large subunit YP_001958756.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1975 photosystem P840 reaction center iron-sulfur protein YP_001958757.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_1974 dolichyl-phosphate beta-D-mannosyltransferase YP_001958758.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001958759.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001958760.1 PFAM: Septum formation initiator; KEGG: plt:Plut_1971 hypothetical protein YP_001958761.1 KEGG: cte:CT0147 GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_001958762.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_1969 oxidoreductase, short-chain dehydrogenase/reductase family YP_001958763.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001958764.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: plt:Plut_1967 NusG antitermination factor YP_001958765.1 binds directly to 23S ribosomal RNA YP_001958766.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001958767.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001958768.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001958769.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001958770.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001958771.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cch:Cag_0359 acetyl-CoA carboxylase, biotin carboxylase YP_001958772.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pvi:Cvib_1602 biotin carboxyl carrier protein YP_001958773.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001958774.1 PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0160 DNA-binding protein HU-beta YP_001958775.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001958776.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_001958777.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cte:CT0163 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit YP_001958778.1 KEGG: cch:Cag_0367 hypothetical protein YP_001958779.1 KEGG: pvi:Cvib_1065 hypothetical protein YP_001958780.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001958781.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_1592 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001958782.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1895 hypothetical protein YP_001958783.1 PFAM: N-6 DNA methylase; KEGG: ava:Ava_1159 N-6 DNA methylase YP_001958784.1 PFAM: restriction modification system DNA specificity domain; KEGG: pab:PAB2150 type I restriction-modification enzyme, S subunit YP_001958785.1 KEGG: gsu:GSU1360 hypothetical protein YP_001958786.1 KEGG: gsu:GSU1361 Piwi domain protein YP_001958787.1 KEGG: ava:Ava_1156 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; protein of unknown function DUF1568; SMART: DEAD-like helicases YP_001958788.1 PFAM: protein of unknown function DUF45; KEGG: ava:Ava_1155 metal-dependent hydrolase-like YP_001958789.1 PFAM: helix-turn-helix domain protein; KEGG: ccr:CC_2771 transcriptional regulator, Cro/CI family YP_001958790.1 KEGG: cte:CT0173 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3 YP_001958791.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001958792.1 KEGG: pvi:Cvib_1588 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_001958793.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0177 proline iminopeptidase YP_001958794.1 PFAM: transcription activator effector binding; KEGG: cte:CT0179 hypothetical protein YP_001958795.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0180 lycopene cyclase YP_001958796.1 KEGG: cch:Cag_1575 hypothetical protein YP_001958797.1 KEGG: cte:CT0182 hypothetical protein YP_001958798.1 KEGG: cte:CT0188 C-type cytochrome YP_001958799.1 PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: pvi:Cvib_1582 NAD-dependent epimerase/dehydratase YP_001958800.1 KEGG: cte:CT0471 hypothetical protein YP_001958801.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pvi:Cvib_0809 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) YP_001958802.1 KEGG: cte:CT0190 hypothetical protein YP_001958803.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cte:CT0191 ATP-dependent Clp protease, ATP-binding subunit ClpC YP_001958804.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_001958805.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: plt:Plut_1796 lipopolysaccharide heptosyltransferase II YP_001958806.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: cte:CT0199 thiamine-monophosphate kinase YP_001958807.1 KEGG: cch:Cag_1212 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001958808.1 KEGG: cch:Cag_1211 hypothetical protein YP_001958809.1 KEGG: cte:CT0202 protein-L-isoaspartate (D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001958810.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pvi:Cvib_1572 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001958811.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cte:CT0204 phosphoenolpyruvate-protein phosphotransferase YP_001958812.1 KEGG: cte:CT0205 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_001958813.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cte:CT0206 DNA polymerase bacteriophage-type YP_001958814.1 KEGG: cte:CT0207 pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_001958815.1 KEGG: plt:Plut_1902 hypothetical protein YP_001958816.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: pvi:Cvib_1565 RfaE bifunctional protein YP_001958817.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase YP_001958818.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: sbm:Shew185_2902 lipopolysaccharide biosynthesis protein YP_001958819.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: pol:Bpro_3983 polysaccharide biosynthesis protein CapD YP_001958820.1 KEGG: plt:Plut_1857 hypothetical protein YP_001958821.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1383 ATPase YP_001958822.1 KEGG: ter:Tery_1487 hypothetical protein YP_001958823.1 PFAM: glycosyl transferase group 1; KEGG: gvi:gll2465 probable glycosyltransferase YP_001958824.1 KEGG: pdi:BDI_2217 hypothetical protein YP_001958825.1 PFAM: transposase IS4 family protein; KEGG: pth:PTH_2026 transposase and inactivated derivatives YP_001958826.1 KEGG: pdi:BDI_2217 hypothetical protein YP_001958827.1 PFAM: glycosyl transferase family 2; KEGG: sgl:SG0982 hypothetical protein YP_001958828.1 PFAM: glycosyl transferase group 1; KEGG: lsl:LSL_0988 glycosyltransferase YP_001958829.1 KEGG: esi:Exig_2572 hypothetical protein YP_001958830.1 PFAM: glycosyl transferase group 1; KEGG: swd:Swoo_1663 glycosyl transferase group 1 YP_001958831.1 PFAM: sugar transferase; KEGG: gur:Gura_1698 undecaprenyl-phosphate galactose phosphotransferase YP_001958832.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sme:SMb21227 carbamoyl phosphate synthase large subunit YP_001958833.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: reu:Reut_B5377 DegT/DnrJ/EryC1/StrS aminotransferase:aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001958834.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0672 ABC transporter related YP_001958835.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_1798 hypothetical protein YP_001958836.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_1799 hypothetical protein YP_001958837.1 PFAM: glycosyl transferase family 9; KEGG: plt:Plut_1800 LPS heptosyltransferase-like YP_001958838.1 PFAM: O-antigen polymerase; KEGG: plt:Plut_1804 hypothetical protein YP_001958839.1 PFAM: Abortive infection protein; KEGG: cte:CT0232 hypothetical protein YP_001958841.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pvi:Cvib_0694 phosphatidate cytidylyltransferase YP_001958842.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: plt:Plut_1787 PTS IIA-like nitrogen-regulatory protein PtsN YP_001958843.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001958844.1 PFAM: glutaredoxin 2; KEGG: pvi:Cvib_0697 glutaredoxin 2 YP_001958846.1 PFAM: protein of unknown function DUF150; KEGG: plt:Plut_1781 hypothetical protein YP_001958847.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001958848.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: cte:CT0241 translation initiation factor IF-2 YP_001958849.1 PFAM: ribosome-binding factor A; KEGG: cte:CT0242 ribosome-binding factor A YP_001958850.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cte:CT0243 tRNA pseudouridine synthase B YP_001958851.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: pvi:Cvib_1558 FMN adenylyltransferase / riboflavin kinase YP_001958852.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001958853.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cte:CT0246 hypothetical protein YP_001958854.1 Essential for recycling GMP and indirectly, cGMP YP_001958855.1 KEGG: plt:Plut_1772 hypothetical protein YP_001958856.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cte:CT0249 glutathione S-transferase, fosfomycin resistance protein YP_001958857.1 PFAM: Nucleotidyl transferase; KEGG: pvi:Cvib_1552 UDP-N-acetylglucosamine pyrophosphorylase YP_001958858.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001958859.1 PFAM: protein of unknown function DUF1239; KEGG: pvi:Cvib_1550 protein of unknown function DUF1239 YP_001958860.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pvi:Cvib_1549 outer membrane chaperone Skp (OmpH) YP_001958861.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cte:CT0255 DprA/SMF protein, DNA processing factor YP_001958862.1 PFAM: Polyprenyl synthetase; KEGG: pvi:Cvib_1546 geranyltranstransferase YP_001958863.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001958864.1 PFAM: protein of unknown function DUF214; KEGG: cch:Cag_0371 ABC transporter, integral membrane protein YP_001958865.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0259 ABC transporter, ATP-binding protein YP_001958866.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0260 phosphoglucomutase/phosphomannomutase family protein YP_001958867.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001958868.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001958869.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pvi:Cvib_1538 FolC bifunctional protein YP_001958870.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001958872.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter, DctQ component YP_001958873.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component YP_001958874.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pvi:Cvib_1536 electron transfer flavoprotein beta-subunit YP_001958875.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pvi:Cvib_1535 electron transfer flavoprotein, alpha subunit YP_001958876.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: plt:Plut_1753 hypothetical protein YP_001958877.1 KEGG: pvi:Cvib_1533 porin, opacity type YP_001958878.1 KEGG: plt:Plut_1752 hypothetical protein YP_001958879.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cte:CT0266 bacterial surface antigen family protein YP_001958880.1 KEGG: pvi:Cvib_1531 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_001958881.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001958882.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: pvi:Cvib_1529 succinyl-CoA synthetase (ADP-forming) alpha subunit YP_001958883.1 KEGG: pvi:Cvib_1528 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_001958884.1 KEGG: cte:CT0272 hypothetical protein YP_001958885.1 PFAM: polysaccharide biosynthesis protein; KEGG: pvi:Cvib_1526 polysaccharide biosynthesis protein YP_001958886.1 KEGG: pvi:Cvib_1525 hypothetical protein YP_001958887.1 KEGG: pvi:Cvib_1524 hypothetical protein YP_001958888.1 KEGG: cte:CT0277 hypothetical protein YP_001958889.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cte:CT0278 RNA polymerase sigma-70 factor, ECF subfamily YP_001958890.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU2792 hypothetical protein YP_001958891.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: bsu:BSU31500 hypothetical protein YP_001958892.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0279 phosphoglucomutase/phosphomannomutase family protein YP_001958893.1 KEGG: plt:Plut_1739 glycosyl transferase, family 19; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_001958894.1 KEGG: cch:Cag_0476 hypothetical protein YP_001958896.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: abu:Abu_0012 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001958897.1 PFAM: TOBE domain protein; KEGG: sun:SUN_2104 hypothetical protein YP_001958898.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: abu:Abu_0010 molybdenum ABC transporter, permease protein YP_001958899.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ccv:CCV52592_0582 sulfate/thiosulfate import ATP-binding protein CysA (sulfate-transporting ATPase) YP_001958900.1 these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase YP_001958901.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001958902.1 KEGG: cte:CT1769 hypothetical protein YP_001958903.1 KEGG: cte:CT1768 hypothetical protein YP_001958904.1 KEGG: plt:Plut_1714 hypothetical protein YP_001958905.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cte:CT1766 3-oxoacyl-(acyl-carrier-protein) reductase YP_001958906.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0264 ATPase YP_001958907.1 KEGG: pvi:Cvib_1484 hypothetical protein YP_001958908.1 KEGG: cte:CT0457 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase YP_001958909.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0458 hypothetical protein YP_001958910.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pvi:Cvib_1482 demethylmenaquinone methyltransferase YP_001958911.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_001958912.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT0464 membrane fusion protein YP_001958914.1 PFAM: Auxin Efflux Carrier; KEGG: pvi:Cvib_1479 auxin efflux carrier YP_001958915.1 PFAM: protein of unknown function DUF1499; KEGG: amr:AM1_3805 hypothetical protein YP_001958916.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tko:TK1614 NADH dehydrogenase subunit E YP_001958917.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_0620 NADH dehydrogenase (quinone) YP_001958918.1 PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: csc:Csac_0621 molybdopterin oxidoreductase YP_001958919.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001958920.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001958921.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pvi:Cvib_1474 condensin subunit ScpB YP_001958922.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B YP_001958923.1 KEGG: cte:CT0480 hypothetical protein YP_001958924.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cps:CPS_0780 exonuclease YP_001958925.1 PFAM: Domain of unknown function DUF1801; KEGG: mms:mma_2441 hypothetical protein YP_001958926.1 KEGG: cch:Cag_0272 hypothetical protein YP_001958928.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1236 phosphatase YP_001958929.1 PFAM: cell wall hydrolase SleB; KEGG: pla:Plav_0730 cell wall hydrolase SleB YP_001958931.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cte:CT1715 SUA5/YciO/YrdC family protein YP_001958932.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pvi:Cvib_1470 phosphatidate cytidylyltransferase YP_001958933.1 PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; KEGG: pvi:Cvib_1469 Ppx/GppA phosphatase YP_001958934.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: pvi:Cvib_1468 para-aminobenzoate synthase, subunit I YP_001958936.1 KEGG: pvi:Cvib_1467 hypothetical protein YP_001958937.1 KEGG: cte:CT1710 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_001958938.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001958939.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_1680 serine/threonine protein phosphatase YP_001958940.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: plt:Plut_1679 NusB antitermination factor YP_001958941.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1463 haloacid dehalogenase domain protein hydrolase YP_001958942.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cte:CT1707 Smc family protein YP_001958943.1 KEGG: cte:CT1706 dihydropteroate pyrophosphorylase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_001958944.1 PFAM: peptidase M50; KEGG: pvi:Cvib_1460 peptidase M50 YP_001958945.1 KEGG: plt:Plut_1674 cytochrome c YP_001958946.1 PFAM: Methyltransferase type 12; KEGG: pvi:Cvib_1458 methyltransferase type 11 YP_001958947.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cte:CT1702 hypothetical protein YP_001958948.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein YP_001958949.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1491 TPR repeat YP_001958950.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_001958951.1 PFAM: permease; KEGG: cte:CT1726 hypothetical protein YP_001958952.1 TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2 YP_001958953.1 PFAM: regulatory protein ArsR; KEGG: cte:CT1728 transcriptional regulator, ArsR family YP_001958954.1 PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein YP_001958955.1 KEGG: plt:Plut_0316 hypothetical protein YP_001958956.1 PFAM: Alkaline phosphatase; KEGG: pvi:Cvib_1725 alkaline phosphatase YP_001958957.1 PFAM: YibE/F family protein; KEGG: dde:Dde_1217 multitransmembrane protein-like YP_001958958.1 KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein YP_001958959.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1697 BchE/P-methylase family protein YP_001958960.1 PFAM: DNA alkylation repair enzyme; KEGG: amr:AM1_5660 hypothetical protein YP_001958961.1 PFAM: regulatory protein ArsR; KEGG: cte:CT0812 transcriptional regulator, ArsR family YP_001958962.1 PFAM: permease; KEGG: pvi:Cvib_1265 permease YP_001958963.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rso:RSc0827 hypothetical protein YP_001958964.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT1696 hydrolase, haloacid dehalogenase-like family YP_001958965.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cte:CT1689 excinuclease ABC, subunit A YP_001958967.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001958968.1 PFAM: inner-membrane translocator; KEGG: cte:CT1681 ABC transporter, permease protein YP_001958969.1 PFAM: ThiJ/PfpI domain protein; KEGG: cte:CT1680 es1 family protein YP_001958971.1 PFAM: Silent information regulator protein Sir2; KEGG: pis:Pisl_0793 NAD-dependent deacetylase YP_001958972.1 KEGG: plt:Plut_1657 hypothetical protein YP_001958973.1 PFAM: isochorismatase hydrolase; KEGG: cch:Cag_0168 hydrolase, isochorismatase family YP_001958974.1 KEGG: cch:Cag_0169 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_001958975.1 PFAM: protein of unknown function DUF374; KEGG: cte:CT1675 hypothetical protein YP_001958976.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001958977.1 KEGG: pvi:Cvib_1441 hypothetical protein YP_001958978.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: cte:CT1672 carbamoyl-phosphate synthase, medium subunit YP_001958979.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001958980.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pvi:Cvib_1438 ribulose-5-phosphate 3-epimerase YP_001958981.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: plt:Plut_1648 hypothetical protein YP_001958982.1 KEGG: plt:Plut_1647 hypothetical protein YP_001958983.1 PFAM: Peptidase M23; KEGG: plt:Plut_1646 membrane proteins related to metalloendopeptidase-like YP_001958984.1 KEGG: cte:CT1667 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001958985.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cte:CT1666 prephenate dehydratase YP_001958986.1 PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein YP_001958987.1 KEGG: cch:Cag_0164 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_001958988.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: plt:Plut_1641 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001958989.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_001958990.1 PFAM: inositol monophosphatase; KEGG: plt:Plut_1639 inositol-1(or 4)-monophosphatase YP_001958991.1 PFAM: TspO/MBR family protein; KEGG: cte:CT1660 CrtK protein YP_001958992.1 KEGG: cte:CT1658 hypothetical protein YP_001958993.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001958994.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001958995.1 KEGG: cte:CT1649 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_001958996.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001958997.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT1646 tetrapyrrole methylase family protein YP_001958998.1 PFAM: protein of unknown function DUF81; KEGG: dde:Dde_0598 hypothetical protein YP_001958999.1 KEGG: ppd:Ppro_1113 conserved hypothetical cytosolic protein YP_001959000.1 PFAM: helix-turn-helix domain protein; KEGG: cbf:CLI_3781 DNA-binding protein YP_001959001.1 KEGG: cte:CT1645 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001959002.1 KEGG: plt:Plut_1631 protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_001959004.1 KEGG: plt:Plut_0855 hypothetical protein YP_001959007.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dol:Dole_2882 arsenical-resistance protein YP_001959008.1 KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase YP_001959009.1 PFAM: regulatory protein ArsR; KEGG: rru:Rru_A1450 transcriptional regulator, ArsR family YP_001959011.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891 YP_001959012.1 TIGRFAM: addiction module antidote protein; PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family YP_001959013.1 KEGG: noc:Noc_2542 transcriptional regulator, XRE family YP_001959014.1 PFAM: transposase IS4 family protein; KEGG: plt:Plut_0436 transposase-like YP_001959015.1 TIGRFAM: addiction module antidote protein; KEGG: pvi:Cvib_0663 transcriptional regulator YP_001959017.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cte:CT1640 phosphoenolpyruvate carboxylase YP_001959018.1 KEGG: cte:CT1639 photosystem P840 reaction center cytochrome c-551 YP_001959019.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001959020.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1626 hypothetical protein YP_001959021.1 KEGG: cte:CT1636 hypothetical protein YP_001959022.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cte:CT1635 site-specific recombinase, phage/XerD family YP_001959023.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cch:Cag_1763 hypothetical protein YP_001959024.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001959025.1 PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1632 peptide ABC transporter, periplasmic peptide-binding protein YP_001959026.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_1410 binding-protein-dependent transport systems inner membrane component YP_001959027.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001959028.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1629 TPR domain protein YP_001959029.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cch:Cag_1730 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_001959030.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cch:Cag_1731 RNA methyltransferase TrmH, group 3 YP_001959031.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pvi:Cvib_1405 glycine cleavage system H protein YP_001959032.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001959033.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001959034.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cte:CT1618 recombination/replication protein RecN YP_001959035.1 KEGG: sru:SRU_1396 hypothetical protein YP_001959036.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cch:Cag_1748 twin-arginine translocation protein TatA/E YP_001959037.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_001959038.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cch:Cag_1746 MesJ protein YP_001959039.1 KEGG: plt:Plut_1608 hypothetical protein YP_001959040.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001959041.1 required for 70S ribosome assembly YP_001959042.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cte:CT1610 bacteriochlorophyll a synthase YP_001959043.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001959044.1 PFAM: creatinase; peptidase M24; KEGG: cte:CT1608 aminopeptidase P YP_001959045.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cte:CT1607 periplasmic divalent cation tolerance protein CutA YP_001959046.1 KEGG: pvi:Cvib_1392 DNA-directed DNA polymerase YP_001959047.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001959048.1 PFAM: phosphofructokinase; KEGG: cte:CT1603 phosphofructokinase YP_001959049.1 PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system YP_001959050.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001959051.1 KEGG: plt:Plut_1597 hypothetical protein YP_001959052.1 PFAM: protein of unknown function DUF805; KEGG: sfr:Sfri_1774 protein of unknown function DUF805 YP_001959053.1 PFAM: Protein of unknown function DUF1810; KEGG: psa:PST_1645 hypothetical protein YP_001959054.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cte:CT1597 dihydroorotate dehydrogenase YP_001959055.1 KEGG: plt:Plut_1595 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_001959056.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein YP_001959057.1 PFAM: Ferritin Dps family protein; KEGG: sth:STH544 ferritin YP_001959059.1 KEGG: plt:Plut_0619 hypothetical protein YP_001959060.1 PFAM: FeoA family protein; KEGG: cte:CT1744 hypothetical protein YP_001959061.1 PFAM: FeoA family protein; KEGG: pvi:Cvib_0520 FeoA family protein YP_001959062.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: pvi:Cvib_0521 ferrous iron transport protein B YP_001959063.1 KEGG: mag:amb2730 hypothetical protein YP_001959064.1 KEGG: pvi:Cvib_1384 hypothetical protein YP_001959065.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: deb:DehaBAV1_0363 Rieske (2Fe-2S) domain protein YP_001959066.1 KEGG: sru:SRU_1567 hypothetical protein YP_001959067.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pvi:Cvib_1383 carbamoyl-phosphate synthase large subunit YP_001959068.1 KEGG: plt:Plut_1591 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_001959069.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001959070.1 KEGG: pvi:Cvib_1380 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_001959072.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_001959073.1 KEGG: plt:Plut_1587 hypothetical protein YP_001959074.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cte:CT1584 hypothetical protein YP_001959075.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like YP_001959076.1 KEGG: cte:CT0366 hypothetical protein YP_001959077.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_001959079.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_1582 NADH dehydrogenase YP_001959080.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: wsu:WS0691 LIN1550 protein YP_001959081.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mta:Moth_1706 cysteine synthase YP_001959082.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: chy:CHY_2688 thiamine biosynthesis protein ThiS YP_001959083.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: wsu:WS1012 O-acetylhomoserine sulfhydrylase YP_001959084.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: gme:Gmet_1568 UBA/ThiF-type NAD/FAD binding fold:MoeZ/MoeB YP_001959085.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: gme:Gmet_1569 Mov34/MPN/PAD-1 YP_001959086.1 KEGG: csc:Csac_2303 hypothetical protein YP_001959087.1 PFAM: SirA family protein; KEGG: mta:Moth_1968 SirA-like YP_001959088.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959089.1 KEGG: scl:sce2897 conserved secreted protein YP_001959090.1 PFAM: pentapeptide repeat protein; KEGG: amr:AM1_1834 pentapeptide repeat protein YP_001959091.1 KEGG: cte:CT1560 hypothetical protein YP_001959092.1 PFAM: cytochrome c assembly protein; KEGG: cte:CT1559 cytochrome c biogenesis protein YP_001959094.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sru:SRU_2108 TonB dependent receptor YP_001959095.1 PFAM: protein of unknown function DUF985; KEGG: cch:Cag_0287 hypothetical protein YP_001959096.1 KEGG: cte:CT0371 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_001959097.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001959098.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: plt:Plut_0330 uridine kinase-like YP_001959099.1 PFAM: nitroreductase; KEGG: cch:Cag_0586 hypothetical protein YP_001959100.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0375 ABC transporter, ATP-binding protein YP_001959101.1 KEGG: atc:AGR_L_1419 hypothetical protein YP_001959102.1 KEGG: gfo:GFO_1740 hypothetical protein YP_001959103.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001959104.1 KEGG: atc:AGR_L_1417 hypothetical protein YP_001959105.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001959106.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001959107.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cch:Cag_0190 cytosine deaminase YP_001959108.1 KEGG: cte:CT0397 hypothetical protein YP_001959109.1 PFAM: dihydroorotate dehydrogenase; 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD YP_001959110.1 KEGG: cte:CT0399 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_001959111.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin) YP_001959112.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001959113.1 KEGG: cte:CT0403 hypothetical protein YP_001959114.1 binds and unfolds substrates as part of the ClpXP protease YP_001959115.1 PFAM: integrase family protein; KEGG: bfs:BF1685 bacteriophage integrase YP_001959116.1 KEGG: cyt:cce_2607 L-cysteine/cystine lyase YP_001959117.1 KEGG: dsy:DSY0169 hypothetical protein YP_001959118.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY0170 hypothetical protein YP_001959119.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: chu:CHU_1463 excisionase YP_001959120.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: swi:Swit_5120 cobyrinic acid a,c-diamide synthase YP_001959121.1 KEGG: met:M446_6985 hypothetical protein YP_001959123.1 KEGG: nar:Saro_0362 conjugal transfer protein precursor YP_001959124.1 KEGG: mlo:mlr6191 hypothetical protein YP_001959125.1 type IV secretion VirD4 coupling protein family YP_001959126.1 KEGG: bbt:BBta_7439 hypothetical protein YP_001959127.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: oan:Oant_3212 P-type conjugative transfer ATPase TrbB YP_001959129.1 KEGG: plt:Plut_0817 hypothetical protein YP_001959130.1 KEGG: pgi:PG0872 mobilizable transposon, xis protein YP_001959131.1 KEGG: cte:CT2071 hypothetical protein YP_001959133.1 KEGG: hch:HCH_01953 serine/threonine protein phosphatase YP_001959135.1 stimulates methylation of MCP proteins YP_001959136.1 PFAM: inner-membrane translocator; KEGG: mes:Meso_4481 inner-membrane translocator YP_001959137.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_1259 inner-membrane translocator YP_001959138.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cyt:cce_3417 ATP-binding protein of ABC transporter YP_001959139.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: kcr:Kcr_0800 ABC-type branched-chain amino acid transport system, ATPase component YP_001959140.1 PFAM: Extracellular ligand-binding receptor; KEGG: cbf:CLI_0539 high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein YP_001959141.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959143.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959144.1 PFAM: protein of unknown function DUF1016; KEGG: mac:MA2994 hypothetical protein YP_001959145.1 PFAM: type III restriction protein res subunit; KEGG: eba:ebA675 conserved hypothetical protein, potential type III restriction enzyme YP_001959146.1 KEGG: sat:SYN_01823 hypothetical cytosolic protein YP_001959147.1 PFAM: protein of unknown function DUF87; KEGG: sat:SYN_01822 ATPase YP_001959149.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_001959150.1 PFAM: Domain of unknown function DUF1814; KEGG: mmw:Mmwyl1_0849 domain of unknown function DUF1814 YP_001959151.1 KEGG: pvi:Cvib_1738 hypothetical protein YP_001959152.1 PFAM: Domain of unknown function DUF1814; KEGG: pvi:Cvib_1737 hypothetical protein YP_001959153.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plt:Plut_1784 fic family protein YP_001959154.1 PFAM: DNA primase small subunit; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like YP_001959155.1 KEGG: eba:ebA4606 hypothetical protein YP_001959157.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family YP_001959158.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: ppd:Ppro_1115 addiction module toxin, RelE/StbE family YP_001959159.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001959160.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0827 transcriptional regulator, XRE family YP_001959161.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related YP_001959163.1 PFAM: PilT protein domain protein; KEGG: eba:ebB17 hypothetical protein YP_001959164.1 PFAM: SpoVT/AbrB domain protein; KEGG: rrs:RoseRS_3906 SpoVT/AbrB domain protein YP_001959165.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bja:blr5799 hypothetical protein YP_001959166.1 KEGG: fjo:Fjoh_4910 hypothetical protein YP_001959167.1 KEGG: plt:Plut_1918 hypothetical protein YP_001959168.1 PFAM: PemK family protein; KEGG: plt:Plut_1919 transcriptional modulator of MazE/toxin, MazF YP_001959169.1 KEGG: plt:Plut_0515 hypothetical protein YP_001959170.1 KEGG: plt:Plut_0516 hypothetical protein YP_001959171.1 KEGG: plt:Plut_0517 hypothetical protein YP_001959172.1 KEGG: plt:Plut_0518 hypothetical protein YP_001959173.1 KEGG: hne:HNE_3258 lipoprotein YP_001959175.1 KEGG: pvi:Cvib_1216 protein of unknown function DUF1568 YP_001959176.1 TIGRFAM: mobile mystery protein A; PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1905 transcriptional regulator, XRE family YP_001959177.1 TIGRFAM: mobile mystery protein B; PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU1391 Fic family protein YP_001959178.1 KEGG: abu:Abu_1172 conserved hypothetical protein, DNA helicase YP_001959179.1 KEGG: acr:Acry_2421 hypothetical protein YP_001959180.1 KEGG: pvi:Cvib_1140 hypothetical protein YP_001959181.1 PFAM: Eco57I restriction endonuclease; KEGG: acr:Acry_2422 site-specific DNA-methyltransferase (adenine-specific) YP_001959182.1 KEGG: cte:CT1159 type III restriction system methylase YP_001959183.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: mba:Mbar_A1014 type I restriction-modification system restriction subunit YP_001959184.1 KEGG: chu:CHU_2939 probable type I restriction-modification system YP_001959185.1 PFAM: N-6 DNA methylase; KEGG: mba:Mbar_A1016 type I restriction-modification system methyltransferase subunit YP_001959186.1 KEGG: plt:Plut_0507 hypothetical protein YP_001959187.1 KEGG: gvi:gll3694 hypothetical protein YP_001959188.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT2121 methyltransferase YP_001959189.1 KEGG: eli:ELI_01410 hypothetical protein YP_001959190.1 KEGG: rme:Rmet_4006 hypothetical protein YP_001959191.1 KEGG: cte:CT1080 hypothetical protein YP_001959192.1 PFAM: methyltransferase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sfu:Sfum_0266 methyltransferase type 11 YP_001959193.1 KEGG: rpe:RPE_3904 anti-sigma regulatory factor, serine/threonine protein kinase YP_001959194.1 KEGG: mag:amb2391 hypothetical protein YP_001959195.1 KEGG: plt:Plut_1444 hypothetical protein YP_001959196.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ana:alr1722 probable oxidoreductase YP_001959197.1 KEGG: ppd:Ppro_0186 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase YP_001959198.1 KEGG: pvi:Cvib_0574 RNAse R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein YP_001959199.1 PFAM: sodium/hydrogen exchanger; KEGG: sde:Sde_2015 sodium/hydrogen antiporter YP_001959200.1 KEGG: cch:Cag_0876 DNA photolyase, class 2; TIGRFAM: deoxyribodipyrimidine photolyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein YP_001959201.1 PFAM: glutamine amidotransferase class-I; KEGG: plt:Plut_0523 glutamine amidotransferase, class I YP_001959202.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959203.1 KEGG: ppr:PBPRB1749 hypothetical protein YP_001959204.1 PFAM: Integrase catalytic region; KEGG: pvi:Cvib_1308 integrase, catalytic region YP_001959205.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_1307 transposase IS3/IS911 family protein YP_001959206.1 KEGG: bxe:Bxe_C0016 hypothetical protein YP_001959207.1 PFAM: Rhodanese domain protein; KEGG: pvi:Cvib_0577 rhodanese domain protein YP_001959208.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001959209.1 KEGG: cte:CT0523 hypothetical protein YP_001959210.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_0581 alpha/beta hydrolase fold YP_001959211.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pvi:Cvib_0582 transcriptional regulator, BadM/Rrf2 family YP_001959212.1 KEGG: pvi:Cvib_0583 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001959213.1 KEGG: pvi:Cvib_0584 hypothetical protein YP_001959214.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001959215.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001959216.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cte:CT0532 ExsB protein YP_001959217.1 PFAM: Abortive infection protein; KEGG: cch:Cag_1314 hypothetical protein YP_001959218.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001959219.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0536 glycosyl transferase YP_001959220.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: plt:Plut_0547 nucleoside-diphosphate-sugar epimerase-like YP_001959221.1 PFAM: cyclase/dehydrase; KEGG: cte:CT0537 hypothetical protein YP_001959222.1 PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein YP_001959223.1 PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein YP_001959224.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pvi:Cvib_0500 alpha amylase, catalytic region YP_001959225.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: psp:PSPPH_3532 pterin-4-alpha-carbinolamine dehydratase YP_001959226.1 PFAM: UvrD/REP helicase; KEGG: pvi:Cvib_0501 ATP-dependent DNA helicase PcrA YP_001959227.1 KEGG: pvi:Cvib_0502 hypothetical protein YP_001959228.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_001959229.1 KEGG: plt:Plut_0457 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001959230.1 KEGG: plt:Plut_0458 enoyl-(acyl-carrier protein) reductase (NADH) YP_001959231.1 KEGG: cch:Cag_1410 isocitrate dehydrogenase NADP-dependent, monomeric type; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_001959232.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001959234.1 KEGG: ter:Tery_4957 hypothetical protein YP_001959235.1 KEGG: nmu:Nmul_A1374 hypothetical protein YP_001959236.1 KEGG: nmu:Nmul_A1374 hypothetical protein YP_001959237.1 KEGG: plt:Plut_0979 hypothetical protein YP_001959238.1 PFAM: plasmid stabilization system; KEGG: plt:Plut_0980 protein of the plasmid stabilization system YP_001959239.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_1198 cell division ATP-binding protein FtsE YP_001959240.1 KEGG: cte:CT0591 pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_001959241.1 KEGG: pvi:Cvib_1196 hypothetical protein YP_001959242.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cch:Cag_1115 3-deoxy-D-manno-octulosonic-acid transferase YP_001959243.1 KEGG: ttj:TTHA1662 hypothetical protein YP_001959244.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: plt:Plut_0587 DEAD/DEAH box helicase-like YP_001959245.1 KEGG: net:Neut_0977 hypothetical protein YP_001959246.1 KEGG: cte:CT0599 hypothetical protein YP_001959247.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rde:RD1_1589 hypothetical protein YP_001959248.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cte:CT0598 metallo-beta-lactamase family protein YP_001959249.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: plt:Plut_0590 tyrosine recombinase XerD YP_001959250.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pvi:Cvib_1185 sun protein YP_001959251.1 KEGG: cte:CT0604 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_001959252.1 KEGG: cte:CT0605 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_001959253.1 KEGG: eba:ebA2608 DNA-binding protein YP_001959254.1 KEGG: fnu:FN0417 type III restriction-modification system restriction subunit YP_001959255.1 KEGG: plt:Plut_1211 hypothetical protein YP_001959256.1 PFAM: sulfotransferase; KEGG: rxy:Rxyl_2693 hypothetical protein YP_001959257.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001959258.1 KEGG: cte:CT0607 hypothetical protein YP_001959260.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pvi:Cvib_1180 short-chain dehydrogenase/reductase SDR YP_001959261.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_001959262.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: plt:Plut_0597 cold-shock DNA-binding domain protein YP_001959263.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001959264.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001959265.1 involved in the peptidyltransferase reaction during translation YP_001959266.1 PFAM: ribosomal protein L21; KEGG: cch:Cag_0864 50S ribosomal protein L21 YP_001959267.1 KEGG: cte:CT1504 hypothetical protein YP_001959269.1 This protein performs the mismatch recognition step during the DNA repair process YP_001959270.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: plt:Plut_1503 elongator protein 3/MiaB/NifB YP_001959271.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1501 ABC transporter, ATP-binding protein YP_001959272.1 PFAM: regulatory protein MerR; KEGG: cte:CT1500 transcriptional regulator, MerR family YP_001959273.1 PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein YP_001959274.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: plt:Plut_1499 apolipoprotein N-acyltransferase YP_001959275.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cte:CT1497 sigma-54-dependent transcriptional regulator YP_001959276.1 PFAM: Sporulation domain protein; KEGG: pvi:Cvib_1322 sporulation domain protein YP_001959277.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001959278.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1494 carbon-nitrogen hydrolase family protein YP_001959279.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cch:Cag_1074 xanthine/uracil permease family protein YP_001959280.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_1493 thiolredoxin peroxidase YP_001959281.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001959282.1 KEGG: cte:CT1489 hypothetical protein YP_001959283.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: RNA methylase; O-methyltransferase family 3; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1487 hemK protein YP_001959284.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: plt:Plut_1489 negative regulator of class I heat shock protein YP_001959285.1 PFAM: GrpE protein; KEGG: plt:Plut_1488 GrpE protein YP_001959286.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001959287.1 PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: plt:Plut_1486 hypothetical protein YP_001959289.1 KEGG: pvi:Cvib_1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_001959290.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: plt:Plut_1484 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase YP_001959291.1 PFAM: major facilitator superfamily MFS_1; KEGG: pvi:Cvib_1297 major facilitator superfamily MFS_1 YP_001959292.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1474 ABC transporter, ATP-binding protein YP_001959293.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001959295.1 PFAM: outer membrane efflux protein; KEGG: pca:Pcar_1716 outer membrane protein YP_001959296.1 KEGG: ppd:Ppro_2928 efflux transporter, RND family, MFP subunit YP_001959297.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_2437 heavy metal efflux pump, CzcA family YP_001959298.1 KEGG: mxa:MXAN_0342 hypothetical protein YP_001959299.1 KEGG: mxa:MXAN_0342 hypothetical protein YP_001959300.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein YP_001959301.1 PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0835 conserved hypothetical protein, phage-related YP_001959302.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0834 transcriptional regulator, XRE family YP_001959303.1 PFAM: DNA polymerase beta domain protein region; KEGG: cau:Caur_2099 DNA polymerase beta domain protein region YP_001959304.1 PFAM: protein of unknown function DUF86; KEGG: lch:Lcho_0358 protein of unknown function DUF86 YP_001959305.1 KEGG: cch:Cag_1737 hypothetical protein YP_001959306.1 PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cau:Caur_2526 D12 class N6 adenine-specific DNA methyltransferase YP_001959308.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_1307 transposase IS3/IS911 family protein YP_001959309.1 PFAM: Integrase catalytic region; KEGG: pvi:Cvib_1308 integrase, catalytic region YP_001959310.1 KEGG: cch:Cag_1200 hypothetical protein YP_001959311.1 KEGG: abu:Abu_1680 hypothetical protein YP_001959313.1 KEGG: rrs:RoseRS_2538 hypothetical protein YP_001959314.1 KEGG: cch:Cag_1259 hypothetical protein YP_001959315.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1260 transcriptional regulator, XRE family YP_001959316.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rpc:RPC_1039 filamentation induced by cAMP protein Fic YP_001959317.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein YP_001959319.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bpl:BURPS1106A_A0033 B12-binding/radical SAM domain protein YP_001959320.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001959321.1 PFAM: sodium/hydrogen exchanger; KEGG: rci:RRC456 Na(+)/H(+) antiporter YP_001959322.1 PFAM: ferric-uptake regulator; KEGG: plt:Plut_1474 ferric uptake regulator, FUR family YP_001959323.1 PFAM: MscS Mechanosensitive ion channel; KEGG: fps:FP0890 probable small-conductance mechanosensitive ionchannel MscS1 YP_001959324.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001959325.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0487 methionyl-tRNA formyltransferase YP_001959326.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001959328.1 KEGG: cch:Cag_0491 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_001959329.1 KEGG: plt:Plut_1469 hypothetical protein YP_001959330.1 KEGG: plt:Plut_1468 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like YP_001959331.1 KEGG: plt:Plut_1467 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_001959332.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001959333.1 KEGG: cch:Cag_0496 hypothetical protein YP_001959334.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001959335.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001959336.1 PFAM: Transglycosylase-associated protein; KEGG: gme:Gmet_1208 transglycosylase-associated protein YP_001959337.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: plt:Plut_1461 PucC protein YP_001959338.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: plt:Plut_1460 elongator protein 3/MiaB/NifB YP_001959342.1 KEGG: pca:Pcar_0670 hypothetical protein YP_001959343.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: plt:Plut_0987 DEAD/DEAH box helicase-like YP_001959344.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: plt:Plut_1438 6-pyruvoyl tetrahydrobiopterin synthase YP_001959345.1 PFAM: peptidase S24 and S26 domain protein; KEGG: plt:Plut_1201 SOS-response transcriptional repressors (RecA-mediated autopeptidase)-like YP_001959346.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pvi:Cvib_0129 DNA-directed DNA polymerase YP_001959347.1 KEGG: cte:CT1436 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_001959348.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001959349.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001959350.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cte:CT1358 sensor histidine kinase/response regulator YP_001959351.1 KEGG: cte:CT1356 hypothetical protein YP_001959352.1 PFAM: amine oxidase; KEGG: cte:CT1357 hypothetical protein YP_001959353.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cte:CT1358 sensor histidine kinase/response regulator YP_001959355.1 KEGG: cte:CT1430 myo-inositol-1(or 4)-monophosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase YP_001959356.1 PFAM: protein of unknown function DUF195; KEGG: dsy:DSY2067 hypothetical protein YP_001959358.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cte:CT1428 uroporphyrinogen-III synthase YP_001959359.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001959360.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001959361.1 PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein YP_001959362.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cte:CT1424 GTP-binding elongation factor family protein, TypA subfamily YP_001959363.1 KEGG: cte:CT1423 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2 YP_001959364.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1422 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide YP_001959365.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: pvi:Cvib_1239 2-vinyl bacteriochlorophyllide hydratase YP_001959366.1 PFAM: extracellular solute-binding protein family 5; KEGG: cte:CT1420 peptide ABC transporter, periplasmic peptide-binding protein YP_001959367.1 PFAM: glucose-inhibited division protein A; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_500 thioredoxin reductase YP_001959368.1 PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein YP_001959369.1 KEGG: cte:CT1418 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_001959370.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: plt:Plut_1417 two component transcriptional regulator, fis family YP_001959371.1 KEGG: cte:CT1417 chlorosome envelope protein H YP_001959373.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1416 glycosyl transferase YP_001959374.1 KEGG: cte:CT1415 hypothetical protein YP_001959375.1 PFAM: amine oxidase; KEGG: cte:CT1414 zeta-carotene desaturase YP_001959378.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; regulatory protein Crp; KEGG: cte:CT1412 transcriptional regulator, AsnC family YP_001959379.1 PFAM: glutamine synthetase catalytic region; KEGG: pvi:Cvib_1230 glutamine synthetase, catalytic region YP_001959380.1 KEGG: ppp:PHYPADRAFT_100784 hypothetical protein PROSITE: ASP_RICH GLY_RICH TRP_RICH YP_001959381.1 PFAM: protein of unknown function UPF0047; KEGG: plt:Plut_1410 hypothetical protein YP_001959382.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959383.1 KEGG: cte:CT1409 hypothetical protein YP_001959384.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001959385.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001959386.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001959387.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cte:CT0185 glycerol kinase YP_001959388.1 KEGG: cte:CT1398 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001959389.1 KEGG: pvi:Cvib_1223 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_001959390.1 PFAM: NGN domain protein; KEGG: cte:CT0622 transcriptional regulator, NusG/RfaH family YP_001959391.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_1219 NAD-dependent epimerase/dehydratase YP_001959392.1 PFAM: AAA-4 family protein; KEGG: plt:Plut_1398 transcriptional regulator YP_001959393.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001959394.1 PFAM: Squalene/phytoene synthase; KEGG: cte:CT1386 phytoene desaturase YP_001959395.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cte:CT1384 GTP-binding protein HflX YP_001959396.1 PFAM: protein of unknown function UPF0054; KEGG: cte:CT1383 hypothetical protein YP_001959397.1 PFAM: protein of unknown function DUF456; KEGG: cte:CT0321 hypothetical protein YP_001959398.1 PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein YP_001959399.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001959400.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cte:CT1371 diaminopimelate decarboxylase YP_001959401.1 KEGG: pvi:Cvib_0706 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_001959402.1 PFAM: ComEC/Rec2-related protein; KEGG: plt:Plut_1346 ComEC/Rec2-related protein YP_001959404.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: pca:Pcar_2292 hypothetical protein YP_001959405.1 KEGG: plt:Plut_1345 hypothetical protein YP_001959406.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_1344 hypothetical protein YP_001959407.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1364 peptide ABC transporter, permease protein YP_001959408.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001959409.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001959410.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: plt:Plut_1340 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD YP_001959411.1 PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: scl:sce8050 glycosyl hydrolase YP_001959412.1 PFAM: conserved hypothetical protein; KEGG: aha:AHA_3790 OB-fold nucleic acid binding domain protein YP_001959413.1 KEGG: plt:Plut_1211 hypothetical protein YP_001959414.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cch:Cag_0440 two component transcriptional regulator, winged helix family YP_001959415.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase YP_001959416.1 KEGG: cch:Cag_1145 hypothetical protein YP_001959417.1 KEGG: lch:Lcho_1136 hypothetical protein YP_001959418.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_1623 cytochrome c, class I YP_001959419.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein YP_001959420.1 KEGG: cte:CT1352 hypothetical protein YP_001959421.1 KEGG: hch:HCH_01698 predicted membrane protein YP_001959422.1 PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214 YP_001959423.1 PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0717 protein of unknown function DUF214 YP_001959424.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1349 ABC transporter, ATP-binding protein YP_001959425.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD YP_001959426.1 KEGG: cte:CT1346 hypothetical protein YP_001959427.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001959428.1 PFAM: CoA-binding domain protein; KEGG: cte:CT1344 hypothetical protein YP_001959429.1 KEGG: cte:CT1519 hypothetical protein YP_001959430.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: plt:Plut_1329 lipoate-protein ligase A-like YP_001959431.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001959432.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1340 CDP-diacylglycerol-serine O-phosphatidyltransferase YP_001959433.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: plt:Plut_1326 phosphoribosylformylglycinamidine synthetase PurS YP_001959434.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001959435.1 PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1324 MFS transporter family protein YP_001959436.1 PFAM: ribonuclease BN; KEGG: cte:CT1325 ribonuclease BN YP_001959437.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001959438.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit YP_001959439.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001959440.1 TIGRFAM: PAS sensor protein; SMART: PAS domain containing protein; KEGG: cch:Cag_0562 PAS/PAC sensor protein YP_001959441.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959442.1 KEGG: cte:CT1257 hypothetical protein YP_001959443.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC2798 NADH:flavin oxidoreductase YP_001959444.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: xac:XAC0815 methyltransferase YP_001959445.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0931 elongator protein 3/MiaB/NifB YP_001959446.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein YP_001959447.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cte:CT1317 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001959448.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: plt:Plut_1313 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001959449.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1047 beta-phosphoglucomutase family hydrolase YP_001959450.1 KEGG: cte:CT1314 hypothetical protein YP_001959451.1 PFAM: thymidylate kinase; KEGG: cte:CT1313 thymidylate kinase YP_001959452.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1312 lipase YP_001959453.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pvi:Cvib_1044 short-chain dehydrogenase/reductase SDR YP_001959455.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: plt:Plut_1072 2-oxoacid:ferredoxin oxidoreductase, alpha subunit YP_001959456.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate YP_001959457.1 KEGG: ppd:Ppro_2335 hypothetical protein YP_001959459.1 KEGG: xcb:XC_0351 hypothetical protein YP_001959460.1 KEGG: mbu:Mbur_0505 hypothetical protein YP_001959461.1 PFAM: nuclease (SNase domain protein); KEGG: dvl:Dvul_2575 nuclease (SNase domain protein) YP_001959462.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1303 ABC transporter, ATP-binding protein YP_001959463.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: pvi:Cvib_1063 prolyl oligopeptidase YP_001959464.1 KEGG: pvi:Cvib_1062 hypothetical protein YP_001959465.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: cte:CT1300 hypothetical protein YP_001959466.1 KEGG: plt:Plut_0783 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_001959467.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: plt:Plut_0784 dihydrolipoamide dehydrogenase YP_001959468.1 KEGG: plt:Plut_0785 magnesium chelatase ATPase subunit I; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase YP_001959469.1 KEGG: plt:Plut_0786 magnesium chelatase ATPase subunit D; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A YP_001959470.1 KEGG: pvi:Cvib_1057 hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001959471.1 KEGG: plt:Plut_0788 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_001959472.1 PFAM: penicillin-binding protein transpeptidase; KEGG: bcl:ABC0265 methicillin resistance protein MecR1 YP_001959473.1 KEGG: cte:CT0820 hypothetical protein YP_001959474.1 PFAM: protein of unknown function DUF497; KEGG: cte:CT0821 hypothetical protein YP_001959475.1 KEGG: cch:Cag_0159 hypothetical protein YP_001959476.1 KEGG: lbi:LEPBI_I2248 conserved hypothetical protein with PIN domain YP_001959477.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: lbi:LEPBI_I2247 helix-turn-helix protein CopG YP_001959479.1 PFAM: RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; KEGG: cte:CT0383 methlytransferase YP_001959480.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein YP_001959481.1 PFAM: plasmid stabilization system; KEGG: scl:sce1165 hypothetical protein YP_001959482.1 TIGRFAM: nitrogenase-associated protein; PFAM: arsenate reductase and related; KEGG: rru:Rru_A1007 nitrogenase-associated protein YP_001959483.1 TIGRFAM: DNA binding domain protein, excisionase family; PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sth:STH334 DNA modification methylase M.SthI YP_001959485.1 PFAM: pentapeptide repeat protein; KEGG: cch:Cag_1295 MCBG protein (microcin resistance protein)-like YP_001959486.1 PFAM: acriflavin resistance protein; KEGG: vok:COSY_0334 cation/multidrug efflux pump YP_001959487.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_4299 efflux transporter, RND family, MFP subunit YP_001959488.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cte:CT1287 multidrug resistance protein, AcrB/AcrD family YP_001959489.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_0734 RND efflux system, outer membrane lipoprotein, NodT family YP_001959490.1 KEGG: cte:CT1280 hypothetical protein YP_001959491.1 KEGG: plt:Plut_0810 hypothetical protein YP_001959492.1 PFAM: protein of unknown function DUF255; KEGG: cte:CT1279 hypothetical protein YP_001959494.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_001959496.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: pvi:Cvib_0741 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_001959497.1 KEGG: cch:Cag_2018 hypothetical protein YP_001959498.1 PFAM: acid phosphatase (Class B); KEGG: xom:XOO_0225 acid phosphatase YP_001959499.1 PFAM: beta-lactamase domain protein; KEGG: cte:CT0187 hypothetical protein YP_001959500.1 PFAM: surface antigen msp4 family protein; KEGG: plt:Plut_0302 outer surface protein YP_001959501.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959502.1 PFAM: protein of unknown function DUF86; KEGG: mma:MM_1164 hypothetical nucleotidyltransferase YP_001959503.1 TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mca:MCA0775 alcohol dehydrogenase, zinc-containing YP_001959504.1 KEGG: cyt:cce_0300 hypothetical protein YP_001959505.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1272 hypothetical protein YP_001959506.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1271 glycosyl transferase YP_001959507.1 PFAM: protein of unknown function UPF0047; KEGG: rci:RRC22 hypothetical protein YP_001959508.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cch:Cag_1105 bacteriochlorophyll/chlorophyll a synthase YP_001959510.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1261 ferredoxin, 4Fe-4S YP_001959511.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1260 ferredoxin, 4Fe-4S YP_001959512.1 PFAM: PhoH family protein; SMART: AAA ATPase; KEGG: cte:CT1259 PhoH family protein YP_001959513.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cch:Cag_1084 ADP-L-glycero-D-manno-heptose-6-epimerase YP_001959514.1 KEGG: plt:Plut_1207 sigma-24 (FecI-like) YP_001959515.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: cte:CT1256 histidinol-phosphate aminotransferase YP_001959516.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pvi:Cvib_0755 tRNA/rRNA methyltransferase (SpoU) YP_001959517.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1253 hydrolase, alpha/beta hydrolase fold family YP_001959518.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001959520.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001959521.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: plt:Plut_1196 hypothetical protein YP_001959522.1 KEGG: plt:Plut_1195 hypothetical protein YP_001959523.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0838 protein of unknown function DUF6 transmembrane YP_001959524.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001959525.1 PFAM: SNARE associated Golgi protein; KEGG: plt:Plut_1193 DedA family protein YP_001959526.1 PFAM: Transketolase domain protein; KEGG: cte:CT0963 transketolase, N-terminal subunit YP_001959527.1 PFAM: Protein of unknown function methylase KEGG: cch:Cag_1438 hypothetical protein YP_001959528.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001959529.1 PFAM: aminotransferase class I and II; KEGG: cch:Cag_1440 aspartate aminotransferase YP_001959530.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein YP_001959531.1 PFAM: PSP1 domain protein; KEGG: plt:Plut_1187 hypothetical protein YP_001959532.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001959533.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0970 hypothetical protein YP_001959534.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_001959535.1 PFAM: fatty acid hydroxylase; KEGG: rde:RD1_1450 sterol desaturase YP_001959536.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cte:CT0972 anti-anti-sigma factor YP_001959537.1 KEGG: cte:CT0973 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_001959538.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cte:CT0974 Maf protein YP_001959539.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_0778 Na+/solute symporter YP_001959540.1 PFAM: PfkB domain protein; KEGG: pvi:Cvib_0779 PfkB domain protein YP_001959541.1 KEGG: cte:CT0977 alpha-amylase family protein YP_001959542.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001959543.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cch:Cag_1379 peptidoglycan-binding LysM YP_001959544.1 KEGG: plt:Plut_1173 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001959545.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_001959546.1 KEGG: cte:CT0982 hypothetical protein YP_001959547.1 KEGG: cte:CT0983 hypothetical protein YP_001959549.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_4291 ABC transporter related YP_001959550.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dol:Dole_2020 cobalt ABC transporter, inner membrane subunit CbiQ YP_001959551.1 KEGG: dvl:Dvul_1922 hypothetical protein YP_001959552.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dvu:DVU1058 cobalt transport protein CbiM YP_001959553.1 KEGG: dol:Dole_2023 hypothetical protein YP_001959554.1 PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: dps:DP0092 hypothetical protein YP_001959555.1 KEGG: pvi:Cvib_0787 hypothetical protein YP_001959556.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_0788 nitrogen regulatory protein P-II YP_001959557.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_1163 ammonium transporter YP_001959558.1 KEGG: plt:Plut_1162 anti-sigma regulatory factor (serine/threonine protein kinase) YP_001959559.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001959563.1 PFAM: ApbE family lipoprotein; KEGG: plt:Plut_1160 membrane-associated lipoprotein involved in thiamine biosynthesis-like YP_001959564.1 TIGRFAM: integron integrase; PFAM: integrase family protein; KEGG: aeh:Mlg_1799 integron integrase YP_001959565.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sat:SYN_01827 SNF2-related:helicase, C-terminal:type III restriction enzyme YP_001959566.1 KEGG: det:DET1110 hypothetical protein YP_001959567.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pth:PTH_0151 adenine specific DNA methylase Mod YP_001959568.1 PFAM: type III restriction protein res subunit; KEGG: pth:PTH_0152 restriction endonuclease YP_001959569.1 PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: gtn:GTNG_0160 hypothetical protein YP_001959570.1 KEGG: pmo:Pmob_1533 hypothetical protein YP_001959571.1 KEGG: cch:Cag_1077 hypothetical protein YP_001959572.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: dol:Dole_1697 transcriptional regulator, AbrB family YP_001959574.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959575.1 PFAM: HNH endonuclease; protein of unknown function DUF262; SMART: HNH nuclease; KEGG: cha:CHAB381_0063 hypothetical protein YP_001959576.1 KEGG: rle:RL1102 hypothetical protein YP_001959577.1 TIGRFAM: addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: fjo:Fjoh_4526 transcriptional regulators, CopG/Arc/MetJ family YP_001959578.1 PFAM: plasmid stabilization system; KEGG: fjo:Fjoh_4525 plasmid stabilization system YP_001959579.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pin:Ping_0307 glucose sorbosone dehydrogenase YP_001959581.1 PFAM: UspA domain protein; KEGG: shw:Sputw3181_0409 UspA domain protein YP_001959582.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: shw:Sputw3181_0408 sulphate transporter YP_001959583.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: pvi:Cvib_1043 peptidase, membrane zinc metallopeptidase YP_001959584.1 PFAM: peptidase S14 ClpP; protein of unknown function DUF107; KEGG: cte:CT0795 NfeD protein YP_001959585.1 PFAM: band 7 protein; KEGG: cte:CT0796 band 7 family protein YP_001959586.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_1041 UspA domain protein YP_001959587.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: cch:Cag_1237 arginine/ornithine transport system ATPase YP_001959588.1 KEGG: cch:Cag_1223 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_001959589.1 KEGG: cch:Cag_1127 acetyl-CoA carboxylase alpha subunit-like YP_001959590.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cch:Cag_1126 hypothetical protein YP_001959591.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1125 propionate--CoA ligase YP_001959592.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001959593.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: plt:Plut_1286 transketolase-like YP_001959594.1 PFAM: conserved hypothetical protein; KEGG: cch:Cag_1190 hypothetical protein YP_001959595.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001959596.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1188 phytoene desaturase YP_001959597.1 KEGG: mlo:mlr0961 probable glycosyltransferase YP_001959598.1 KEGG: plt:Plut_1429 hypothetical protein YP_001959599.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_001959600.1 PFAM: aldo/keto reductase; KEGG: cch:Cag_1232 aldo/keto reductase YP_001959601.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cch:Cag_0946 peptide chain release factor 3 YP_001959602.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_001959603.1 PFAM: Inorganic pyrophosphatase; KEGG: plt:Plut_1277 inorganic diphosphatase YP_001959604.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: gfo:GFO_1808 fumarate hydratase class II YP_001959605.1 PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344 YP_001959606.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001959607.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein YP_001959608.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cte:CT0453 molybdenum transport system protein ModD YP_001959609.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pvi:Cvib_1026 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family YP_001959610.1 molecular chaperone YP_001959611.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: plt:Plut_1272 hypothetical protein YP_001959612.1 KEGG: cte:CT0831 hypothetical protein YP_001959613.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_1021 UspA domain protein YP_001959614.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: pvi:Cvib_1019 sodium pump decarboxylase, gamma subunit YP_001959615.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: plt:Plut_1267 oxaloacetate decarboxylase, alpha subunit YP_001959616.1 KEGG: plt:Plut_1266 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_001959617.1 KEGG: cch:Cag_0892 internalin-related protein YP_001959618.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cte:CT0838 glycosyl hydrolase, family 65 YP_001959619.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0839 glycosyl transferase, group 1 family protein YP_001959620.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: pvi:Cvib_1012 thioredoxin YP_001959621.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_1011 thioredoxin reductase YP_001959624.1 KEGG: pha:PSHAb0433 hypothetical protein YP_001959625.1 KEGG: plt:Plut_1256 hypothetical protein YP_001959626.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pvi:Cvib_1007 tRNA guanosine-2'-O-methyltransferase YP_001959627.1 KEGG: bfs:BF0908 outer membrane protein YP_001959628.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_1253 hypothetical protein YP_001959629.1 KEGG: syg:sync_2689 hypothetical protein YP_001959630.1 PFAM: surface antigen (D15); KEGG: afw:Anae109_3731 hypothetical protein YP_001959631.1 KEGG: gfo:GFO_0037 membrane protein containing adenylate/guanylate cyclase catalytic domain YP_001959632.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: chu:CHU_3753 hypothetical protein YP_001959634.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: gfo:GFO_3394 secreted PAP2 superfamily protein YP_001959635.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0889 phosphoglycolate phosphatase YP_001959636.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1251 methyltransferase YP_001959637.1 KEGG: noc:Noc_2446 sodium/sulphate symporter YP_001959638.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pvi:Cvib_1002 phospholipid/glycerol acyltransferase YP_001959639.1 KEGG: pvi:Cvib_1001 hypothetical protein YP_001959640.1 KEGG: pvi:Cvib_1000 hypothetical protein YP_001959641.1 KEGG: pvi:Cvib_0104 hypothetical protein YP_001959642.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pvi:Cvib_0998 phosphate binding protein YP_001959643.1 KEGG: dps:DP1881 similar to phosphate ABC transporter, periplasmic binding protein YP_001959644.1 KEGG: dps:DP1880 phosphate ABC transporter, ATP-binding protein (PstB); TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_001959645.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein PstC YP_001959646.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP1882 phosphate ABC transporter, permease protein (PstA) YP_001959647.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_0996 phosphate ABC transporter, inner membrane subunit PstC YP_001959648.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_0995 phosphate ABC transporter, inner membrane subunit PstA YP_001959649.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001959650.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cte:CT0900 phosphate transport system regulatory protein YP_001959651.1 PFAM: PhoU family protein; KEGG: cte:CT0903 transcriptional regulator YP_001959652.1 KEGG: pvi:Cvib_0991 hypothetical protein YP_001959653.1 KEGG: plt:Plut_1238 hypothetical protein YP_001959654.1 PFAM: pentapeptide repeat protein; KEGG: pvi:Cvib_0989 pentapeptide repeat protein YP_001959655.1 PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0988 glycosyl transferase, family 2 YP_001959656.1 KEGG: dsy:DSY0169 hypothetical protein YP_001959657.1 KEGG: pvi:Cvib_1218 hypothetical protein YP_001959659.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sat:SYN_02042 DNA modification methylase YP_001959660.1 KEGG: sat:SYN_02041 hypothetical cytosolic protein YP_001959662.1 KEGG: fjo:Fjoh_1833 hypothetical protein YP_001959663.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: mja:MJ1672 hypothetical protein YP_001959664.1 KEGG: mma:MM_3344 transposase YP_001959665.1 KEGG: mma:MM_3343 transposase YP_001959666.1 TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: csc:Csac_0076 CRISPR-associated protein, Csm2 family YP_001959667.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: chy:CHY_2142 CRISPR-associated RAMP protein, Csm3 family YP_001959668.1 TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: mac:MA1934 hypothetical protein YP_001959669.1 TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: tme:Tmel_1674 CRISPR-associated RAMP protein, Csm5 family YP_001959670.1 KEGG: sfu:Sfum_1350 conserved hypothetical cytosolic protein YP_001959671.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959672.1 KEGG: cte:CT1522 hypothetical protein YP_001959673.1 KEGG: cch:Cag_0685 hypothetical protein YP_001959674.1 KEGG: maq:Maqu_2675 hypothetical protein YP_001959675.1 KEGG: maq:Maqu_2676 hypothetical protein YP_001959676.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: plt:Plut_1235 oxidoreductase, FAD-binding YP_001959678.1 KEGG: afw:Anae109_4161 hypothetical protein YP_001959679.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain protein YP_001959680.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001959681.1 KEGG: cte:CT1004 hypothetical protein YP_001959682.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: ljo:LJ0730 hypothetical protein YP_001959684.1 KEGG: pvi:Cvib_1578 hypothetical protein YP_001959685.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cte:CT1241 YjeF family protein YP_001959686.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001959687.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_001959688.1 PFAM: phosphoesterase RecJ domain protein; KEGG: pvi:Cvib_0948 phosphoesterase, RecJ domain protein YP_001959689.1 KEGG: plt:Plut_0955 hypothetical protein YP_001959690.1 KEGG: cch:Cag_0822 hypothetical protein YP_001959691.1 PFAM: sodium:dicarboxylate symporter; KEGG: noc:Noc_1770 sodium/dicarboxylate symporter YP_001959692.1 KEGG: plt:Plut_0956 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_001959693.1 KEGG: cch:Cag_0817 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1 YP_001959694.1 KEGG: cte:CT1175 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_001959695.1 PFAM: thiamine monophosphate synthase; KEGG: plt:Plut_0959 thiamine-phosphate pyrophosphorylase YP_001959697.1 PFAM: Endoribonuclease L-PSP; KEGG: cte:CT1173 hypothetical protein YP_001959698.1 PFAM: protein of unknown function DUF192; KEGG: afw:Anae109_3391 protein of unknown function DUF192 YP_001959699.1 KEGG: cte:CT1171 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001959700.1 PFAM: cyclase/dehydrase; KEGG: pvi:Cvib_0939 cyclase/dehydrase YP_001959701.1 KEGG: plt:Plut_0963 hypothetical protein YP_001959702.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pvi:Cvib_0937 RfaE bifunctional protein YP_001959703.1 KEGG: cte:CT1167 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_001959704.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001959705.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cte:CT1165 16S rRNA processing protein RimM YP_001959706.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001959707.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001959708.1 PFAM: HhH-GPD family protein; KEGG: cte:CT1162 A/G-specific adenine glycosylase YP_001959710.1 PFAM: AMP-dependent synthetase and ligase; KEGG: plt:Plut_0972 long-chain fatty-acid-CoA ligase YP_001959711.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pvi:Cvib_0908 cobyrinic acid a,c-diamide synthase YP_001959712.1 PFAM: CHAD domain containing protein; KEGG: cte:CT0884 hypothetical protein YP_001959713.1 PFAM: basic membrane lipoprotein; KEGG: cch:Cag_0792 basic membrane protein A YP_001959714.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: plt:Plut_1008 3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001959715.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: pvi:Cvib_0904 cyclic nucleotide-binding protein YP_001959716.1 KEGG: plt:Plut_1010 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001959717.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pvi:Cvib_0902 methyltransferase type 11 YP_001959718.1 KEGG: pvi:Cvib_0901 hypothetical protein YP_001959719.1 PFAM: Rhodanese domain protein; KEGG: sru:SRU_0931 thiosulfate sulfurtransferase YP_001959720.1 TIGRFAM: methyltransferase; KEGG: bte:BTH_II1712 hypothetical protein YP_001959721.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sse:Ssed_0525 nitrilase YP_001959722.1 KEGG: plt:Plut_0607 hypothetical protein YP_001959723.1 KEGG: ppd:Ppro_0503 hypothetical protein YP_001959724.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: rfr:Rfer_3404 death-on-curing protein YP_001959725.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: vei:Veis_2467 SpoVT/AbrB domain protein YP_001959726.1 KEGG: dol:Dole_2271 hypothetical protein YP_001959727.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cch:Cag_1049 hypothetical protein YP_001959728.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_001959729.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: plt:Plut_1014 fumarylacetoacetate hydrolase family protein YP_001959731.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase YP_001959732.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001959733.1 KEGG: cch:Cag_0901 ribose/galactose isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_001959734.1 PFAM: CBS domain containing protein; KEGG: cch:Cag_0902 transcriptional regulator, XRE family YP_001959735.1 KEGG: cte:CT1052 peptidase, M20/M25/M40 family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001959736.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_001959737.1 KEGG: plt:Plut_1022 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_001959738.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001959739.1 KEGG: hch:HCH_03615 hypothetical protein YP_001959740.1 KEGG: hch:HCH_03616 hypothetical protein YP_001959741.1 KEGG: hch:HCH_03617 hypothetical protein YP_001959742.1 KEGG: ana:all0050 unknown protein YP_001959743.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001959744.1 PFAM: arginine repressor; KEGG: cch:Cag_0776 arginine repressor YP_001959745.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001959746.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001959747.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001959748.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001959749.1 KEGG: cte:CT1106 phosphate-binding protein YP_001959750.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: plt:Plut_1051 diguanylate cyclase (GGDEF domain) YP_001959751.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1103 conserved hypothetical protein YP_001959752.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1102 probable ABC transporter permease protein YP_001959753.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pvi:Cvib_1621 rubredoxin-type Fe(Cys)4 protein YP_001959754.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cch:Cag_0895 hypothetical protein YP_001959755.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: cte:CT1096 outer membrane lipoprotein Blc YP_001959756.1 PFAM: protein of unknown function UPF0016; KEGG: cch:Cag_0794 hypothetical protein YP_001959757.1 KEGG: cte:CT1094 hypothetical protein YP_001959758.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1092 ABC transporter, ATP-binding protein YP_001959759.1 PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0870 conserved hypothetical protein 245 YP_001959760.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001959761.1 PFAM: ATP-grasp domain protein; KEGG: cte:CT1089 citrate lyase, subunit 1 YP_001959762.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cte:CT1088 citrate lyase, subunit 2 YP_001959763.1 KEGG: pvi:Cvib_0103 integrase, catalytic region YP_001959764.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_001959765.1 KEGG: pvi:Cvib_0103 integrase, catalytic region YP_001959766.1 KEGG: fph:Fphi_0778 hypothetical protein YP_001959767.1 PFAM: alpha-acetolactate decarboxylase; KEGG: mca:MCA1838 alpha-acetolactate decarboxylase YP_001959768.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959769.1 KEGG: rba:RB3779 histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001959770.1 KEGG: cte:CT1122 hypothetical protein YP_001959771.1 KEGG: dol:Dole_3091 transposase IS4 family protein YP_001959773.1 PFAM: Integrase catalytic region; KEGG: gur:Gura_0559 integrase, catalytic region YP_001959774.1 PFAM: IstB domain protein ATP-binding protein; KEGG: gur:Gura_0558 IstB domain protein ATP-binding protein YP_001959776.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1471 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001959777.1 KEGG: sfu:Sfum_1326 hypothetical protein YP_001959778.1 KEGG: cch:Cag_0470 hypothetical protein YP_001959779.1 PFAM: carbonic anhydrase; KEGG: aha:AHA_0375 carbonic anhydrase YP_001959780.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001959781.1 KEGG: pvi:Cvib_0856 hypothetical protein YP_001959782.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cch:Cag_1016 hypothetical protein YP_001959783.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family YP_001959784.1 PFAM: ferredoxin; KEGG: cte:CT1382 chlorosome envelope protein I YP_001959786.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: plt:Plut_0999 5-oxoprolinase (ATP-hydrolyzing) YP_001959788.1 PFAM: protein of unknown function DUF218; KEGG: cte:CT1146 hypothetical protein YP_001959789.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: pvi:Cvib_0527 NmrA family protein YP_001959790.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: lch:Lcho_3187 tetratricopeptide TPR_2 repeat protein YP_001959791.1 PFAM: Patatin; KEGG: azo:azo3762 hypothetical patatin-like protein YP_001959792.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001959794.1 PFAM: Radical SAM domain protein; KEGG: csc:Csac_2182 radical SAM domain protein YP_001959795.1 PFAM: Radical SAM domain protein; KEGG: mba:Mbar_A1458 heme biosynthesis protein YP_001959796.1 KEGG: cte:CT1058 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_001959797.1 KEGG: plt:Plut_0524 hypothetical protein YP_001959798.1 KEGG: cch:Cag_1184 hypothetical protein YP_001959799.1 KEGG: cte:CT1653 hypothetical protein YP_001959800.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: pca:Pcar_2839 predicted metal-regulated homodimeric transcriptional regulator YP_001959801.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif) YP_001959802.1 KEGG: cte:CT1463 hypothetical protein YP_001959803.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT0920 7-alpha-hydroxysteroid dehydrogenase YP_001959804.1 KEGG: aba:Acid345_0803 hypothetical protein YP_001959805.1 PFAM: Radical SAM domain protein; KEGG: tte:TTE1166 arylsulfatase regulator (Fe-S oxidoreductase) YP_001959807.1 PFAM: AMP-dependent synthetase and ligase; KEGG: plt:Plut_2064 long-chain fatty-acid-CoA ligase YP_001959808.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pth:PTH_2271 xanthine/uracil permeases YP_001959809.1 PFAM: Cache type 2 domain protein; KEGG: gur:Gura_3066 cache, type 2 domain protein YP_001959810.1 KEGG: gur:Gura_1404 PilT protein domain protein YP_001959811.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1405 transcriptional regulator, AbrB family YP_001959813.1 KEGG: ote:Oter_0373 radical SAM domain protein YP_001959814.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cte:CT0996 8-oxoguanine DNA glycosylase YP_001959815.1 PFAM: peptidase M48 Ste24p; KEGG: ppd:Ppro_3278 peptidase M48, Ste24p YP_001959816.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cte:CT0995 hypothetical protein YP_001959817.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: lbl:LBL_0797 membrane alanyl aminopeptidase YP_001959818.1 KEGG: bfs:BF3448 hypothetical protein YP_001959819.1 KEGG: mem:Memar_1824 flavodoxin YP_001959820.1 PFAM: HpcH/HpaI aldolase; KEGG: nis:NIS_0713 citrate lyase beta chain YP_001959821.1 TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: sfu:Sfum_3854 DNA mismatch endonuclease vsr YP_001959822.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: aoe:Clos_1897 DNA-cytosine methyltransferase YP_001959823.1 KEGG: aoe:Clos_2031 conserved hypothetical protein YP_001959824.1 PFAM: helicase domain protein; KEGG: sgr:SGR_4668 DNA helicase YP_001959825.1 PFAM: NERD domain protein; KEGG: aoe:Clos_2030 NERD domain protein YP_001959828.1 PFAM: protein of unknown function DUF477; KEGG: lbi:LEPBI_I3031 hypothetical protein YP_001959829.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1771 hypothetical protein YP_001959830.1 KEGG: aoe:Clos_0418 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001959831.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_2018 hypothetical protein YP_001959832.1 PFAM: protein of unknown function DUF1568; KEGG: pvi:Cvib_1567 protein of unknown function DUF1568 YP_001959834.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cte:CT0995 hypothetical protein YP_001959835.1 KEGG: pvi:Cvib_0949 transcriptional regulator YP_001959836.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cte:CT1183 florfenicol resistance protein YP_001959837.1 KEGG: cte:CT1184 hypothetical protein YP_001959838.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001959839.1 KEGG: cte:CT1187 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001959840.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001959841.1 PFAM: DoxX family protein; KEGG: pvi:Cvib_0956 DoxX family protein YP_001959842.1 KEGG: cte:CT1189 hypothetical protein YP_001959843.1 KEGG: plt:Plut_0302 outer surface protein YP_001959844.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001959845.1 PFAM: protein of unknown function UPF0005; KEGG: spe:Spro_1325 protein of unknown function UPF0005 YP_001959846.1 heat shock protein involved in degradation of misfolded proteins YP_001959847.1 heat shock protein involved in degradation of misfolded proteins YP_001959848.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cte:CT1193 RNA polymerase sigma-54 factor YP_001959849.1 KEGG: cte:CT1194 hypothetical protein YP_001959850.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001959851.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001959852.1 PFAM: membrane protein of unknown function; KEGG: cte:CT1196 hypothetical protein YP_001959853.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: pvi:Cvib_0966 alcohol dehydrogenase GroES domain protein YP_001959854.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase YP_001959855.1 PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein YP_001959856.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: pvi:Cvib_0969 Cl-channel, voltage-gated family protein YP_001959858.1 KEGG: plt:Plut_0918 hypothetical protein YP_001959859.1 KEGG: cte:CT1202 hypothetical protein YP_001959860.1 PFAM: PASTA domain containing protein; KEGG: cte:CT1205 hypothetical protein YP_001959861.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959862.1 PFAM: Polyprenyl synthetase; KEGG: cte:CT1206 polyprenyl synthetase YP_001959863.1 PFAM: transposase IS4 family protein; KEGG: pth:PTH_2026 transposase and inactivated derivatives YP_001959865.1 KEGG: aba:Acid345_0125 NADP oxidoreductase, coenzyme F420-dependent YP_001959866.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pvi:Cvib_0974 sec-independent protein translocase TatC YP_001959867.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001959868.1 KEGG: cch:Cag_0966 hypothetical protein YP_001959869.1 PFAM: manganese and iron superoxide dismutase; KEGG: plt:Plut_1224 superoxide dismutase YP_001959870.1 KEGG: cte:CT1212 hypothetical protein YP_001959871.1 KEGG: cte:CT1213 hypothetical protein YP_001959872.1 KEGG: gme:Gmet_3000 conserved hypothetical protein-signal peptide prediction YP_001959873.1 KEGG: pvi:Cvib_0981 hypothetical protein YP_001959874.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: plt:Plut_1229 thioredoxin YP_001959876.1 KEGG: plt:Plut_1117 hypothetical protein YP_001959877.1 KEGG: cte:CT1723 hypothetical protein YP_001959878.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1722 hypothetical protein YP_001959879.1 KEGG: cte:CT1721 hypothetical protein YP_001959882.1 KEGG: cch:Cag_1112 hypothetical protein YP_001959883.1 PFAM: HI0933 family protein; KEGG: pvi:Cvib_0829 HI0933 family protein YP_001959884.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cte:CT1221 HlyD family secretion protein YP_001959885.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1222 conserved hypothetical protein YP_001959886.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0953 ABC transporter, ATP-binding protein YP_001959887.1 KEGG: eli:ELI_06985 hypothetical protein YP_001959888.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: sru:SRU_2392 mercuric reductase YP_001959889.1 PFAM: nuclear protein SET; KEGG: cte:CT0952 hypothetical protein YP_001959890.1 KEGG: cps:CPS_2960 hypothetical protein YP_001959891.1 KEGG: bld:BLi03623 hypothetical protein YP_001959892.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cte:CT0951 alcohol dehydrogenase, iron-containing YP_001959893.1 PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 KWG leptospira repeat protein YP_001959894.1 PFAM: protein of unknown function DUF134; KEGG: pvi:Cvib_0826 protein of unknown function DUF134 YP_001959895.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pvi:Cvib_0825 C4-dicarboxylate transporter/malic acid transport protein YP_001959896.1 PFAM: OsmC family protein; KEGG: plt:Plut_1130 hypothetical protein YP_001959897.1 PFAM: cobalamin-5-phosphate synthase CobS; KEGG: plt:Plut_1131 cobalamin 5'-phosphate synthase YP_001959898.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0947 hydrolase, alpha/beta hydrolase fold family YP_001959899.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_001959900.1 PFAM: cobalbumin biosynthesis protein; KEGG: cte:CT0945 cobalamin biosynthesis protein CobP YP_001959902.1 KEGG: pvi:Cvib_0850 hypothetical protein YP_001959904.1 KEGG: plt:Plut_1104 hypothetical protein YP_001959905.1 KEGG: plt:Plut_1105 hypothetical protein YP_001959906.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein YP_001959908.1 PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein YP_001959910.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gfo:GFO_2194 hypothetical protein YP_001959911.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein YP_001959912.1 PFAM: UbiA prenyltransferase; KEGG: mem:Memar_1715 prenyltransferase YP_001959913.1 PFAM: protein of unknown function DUF1568; KEGG: pvi:Cvib_1216 protein of unknown function DUF1568 YP_001959914.1 PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein YP_001959915.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nmu:Nmul_A1554 glyoxalase/bleomycin resistance protein/dioxygenase YP_001959916.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA2781 hypothetical protein YP_001959917.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pca:Pcar_1356 NADPH:quinone reductase/Zn-dependent oxidoreductase YP_001959918.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pdi:BDI_1239 ATP:cob(I)alamin adenosyltransferase YP_001959919.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1135 ATPase YP_001959920.1 PFAM: transport system permease protein; KEGG: pvi:Cvib_0818 transport system permease protein YP_001959921.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_001959922.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: pvi:Cvib_0815 L-threonine O-3-phosphate decarboxylase YP_001959923.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_001959924.1 KEGG: cte:CT0937 nitroreductase family protein; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_001959925.1 KEGG: pvi:Cvib_0813 hypothetical protein YP_001959926.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0935 TonB-dependent receptor-related protein YP_001959927.1 KEGG: cte:CT0933 hypothetical protein YP_001959928.1 KEGG: plt:Plut_1857 hypothetical protein YP_001959929.1 PFAM: NUDIX hydrolase; KEGG: cch:Cag_0727 NUDIX/MutT family protein YP_001959930.1 PFAM: periplasmic binding protein; KEGG: pvi:Cvib_0804 periplasmic binding protein YP_001959931.1 PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1149 drug resistance protein YP_001959932.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cte:CT0990 polyA polymerase family protein YP_001959933.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001959934.1 KEGG: pvi:Cvib_0799 hypothetical protein YP_001959935.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_001959936.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pvi:Cvib_0797 electron transport complex, RnfABCDGE type, C subunit YP_001959937.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pvi:Cvib_0796 electron transport complex, RnfABCDGE type, D subunit YP_001959938.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pvi:Cvib_0795 electron transport complex, RnfABCDGE type, G subunit YP_001959939.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_001959940.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pvi:Cvib_0793 electron transport complex, RnfABCDGE type, A subunit YP_001959941.1 PFAM: Inorganic pyrophosphatase; KEGG: sru:SRU_2022 inorganic pyrophosphatase YP_001959942.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfs:BF4328 TonB-dependent outer membrane receptor protein YP_001959943.1 PFAM: phytase; KEGG: fjo:Fjoh_1367 phytase YP_001959945.1 KEGG: pmo:Pmob_1533 hypothetical protein YP_001959946.1 KEGG: cth:Cthe_1161 hypothetical protein YP_001959948.1 PFAM: restriction endonuclease; KEGG: bat:BAS2162 Mrr restriction protein-related YP_001959949.1 KEGG: pha:PSHAa0675 hypothetical protein YP_001959950.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: plt:Plut_1831 ATPase YP_001959952.1 KEGG: lch:Lcho_3128 response regulator receiver protein YP_001959954.1 KEGG: pin:Ping_1394 hypothetical protein YP_001959955.1 KEGG: dol:Dole_0898 hypothetical protein YP_001959956.1 PFAM: phosphatidylserine decarboxylase-related; KEGG: sun:SUN_0883 phosphatidylserine decarboxylase YP_001959957.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: art:Arth_2725 peptidase C14, caspase catalytic subunit P20 YP_001959958.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_0131 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001959959.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cte:CT0699 ThiS protein YP_001959960.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001959961.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center YP_001959962.1 KEGG: cte:CT1238 hypothetical protein YP_001959963.1 KEGG: hch:HCH_04190 hypothetical protein YP_001959964.1 PFAM: UvrD/REP helicase; KEGG: ppg:PputGB1_3118 UvrD/REP helicase YP_001959965.1 KEGG: ppg:PputGB1_3117 hypothetical protein YP_001959966.1 KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain YP_001959967.1 KEGG: cch:Cag_0884 Fibrobacter succinogenes major paralogous domain YP_001959968.1 KEGG: plt:Plut_1000 hypothetical protein YP_001959970.1 PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: mem:Memar_2259 methyltransferase type 11 YP_001959971.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_1124 alpha/beta hydrolase fold YP_001959972.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001959973.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rma:Rmag_0627 D-3-phosphoglycerate dehydrogenase YP_001959974.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gme:Gmet_1630 haloacid dehalogenase-like hydrolase YP_001959975.1 PFAM: plasmid stabilization system; KEGG: neu:NE1591 hypothetical protein YP_001959976.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: neu:NE1592 hypothetical protein YP_001959977.1 KEGG: cch:Cag_1371 hypothetical protein YP_001959978.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cch:Cag_1370 cytochrome oxidase maturation protein cbb3-type YP_001959979.1 KEGG: cch:Cag_1369 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein YP_001959980.1 KEGG: cch:Cag_1368 hypothetical protein YP_001959981.1 KEGG: cch:Cag_1367 hypothetical protein YP_001959982.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001959984.1 KEGG: cch:Cag_1359 polyferredoxin-like YP_001959985.1 PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III YP_001959986.1 KEGG: afw:Anae109_1221 hypothetical protein YP_001959987.1 CcoO; FixO YP_001959988.1 PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I YP_001959989.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cte:CT0782 6-pyruvoyltetrahydropterin synthase YP_001959990.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001959991.1 PFAM: protein of unknown function UPF0118; KEGG: dno:DNO_0651 hypothetical protein YP_001959992.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: plt:Plut_1449 peptidase M52, hydrogen uptake protein YP_001959993.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: plt:Plut_1448 nickel-dependent hydrogenase b-type cytochrome subunit YP_001959994.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: plt:Plut_1447 hydrogenase large chain YP_001959995.1 KEGG: plt:Plut_1446 Ni-Fe hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_001959996.1 KEGG: rba:RB7682 hypothetical protein YP_001959997.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; KEGG: sun:SUN_0712 hypothetical protein YP_001959999.1 KEGG: plt:Plut_0753 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001960000.1 KEGG: cch:Cag_0643 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_001960001.1 KEGG: cte:CT0774 NADH dehydrogenase I subunit 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_001960002.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: plt:Plut_0750 NADH dehydrogenase I subunit 4L YP_001960003.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: pvi:Cvib_1087 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_001960004.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_0748 NADH dehydrogenase I, 23 kDa subunit YP_001960005.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: plt:Plut_0747 NADH dehydrogenase I chain H YP_001960006.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: plt:Plut_0746 NADH dehydrogenase (ubiquinone) YP_001960007.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cch:Cag_0636 NADH (or F420H2) dehydrogenase, subunit C YP_001960008.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_001960009.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: cte:CT0766 NADH dehydrogenase I, subunit 3 YP_001960010.1 KEGG: cte:CT0765 hypothetical protein YP_001960011.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0741 TPR repeat YP_001960012.1 KEGG: pvi:Cvib_1097 hypothetical protein YP_001960013.1 PFAM: histidine triad (HIT) protein; KEGG: plt:Plut_0735 Hit family protein YP_001960014.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein YP_001960015.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: csa:Csal_1095 sodium/hydrogen exchanger YP_001960016.1 PFAM: UspA domain protein; KEGG: lpf:lpl2306 hypothetical protein YP_001960017.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: plt:Plut_0947 ATPase, E1-E2 type YP_001960018.1 PFAM: outer membrane efflux protein; KEGG: plt:Plut_0733 outer membrane efflux protein YP_001960019.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cte:CT0757 ATPase, AAA family YP_001960020.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001960021.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001960022.1 PFAM: DoxX family protein; KEGG: plt:Plut_0728 hypothetical protein YP_001960023.1 KEGG: bav:BAV1041 outer membrane porin protein YP_001960024.1 KEGG: cch:Cag_0623 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_001960025.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0746 deoxycytidylate deaminase YP_001960026.1 PFAM: protein of unknown function DUF814; KEGG: cte:CT0745 fibronectin-binding protein YP_001960027.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0621 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_001960028.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cte:CT0740 hypothetical protein YP_001960029.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: cch:Cag_1531 preprotein translocase subunit SecG YP_001960030.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001960031.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001960032.1 KEGG: cte:CT0732 hypothetical protein YP_001960033.1 KEGG: cch:Cag_1543 hypothetical protein YP_001960034.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001960035.1 PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_1116 outer membrane efflux protein YP_001960036.1 PFAM: acriflavin resistance protein; KEGG: plt:Plut_0709 RND family efflux transporter YP_001960037.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: plt:Plut_0708 secretion protein HlyD YP_001960038.1 PFAM: regulatory protein MarR; KEGG: dsy:DSY3432 hypothetical protein YP_001960039.1 PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_1119 NUDIX hydrolase YP_001960040.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: plt:Plut_0673 glucose-1-phosphate thymidylyltransferase YP_001960041.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001960042.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001960043.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cte:CT0718 N-(5'-phosphoribosyl)-anthranilate isomerase YP_001960044.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_1124 alpha/beta hydrolase fold YP_001960045.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pca:Pcar_1772 protein-tyrosine-phosphatase YP_001960046.1 PFAM: Rubrerythrin; KEGG: cte:CT1327 rubrerythrin YP_001960047.1 KEGG: cte:CT1059 hypothetical protein YP_001960048.1 PFAM: regulatory protein MarR; KEGG: plt:Plut_1577 transcriptional regulator, MarR family YP_001960049.1 KEGG: plt:Plut_1576 protein of unknown function DUF160; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_001960050.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pvi:Cvib_1366 SSS sodium solute transporter superfamily YP_001960051.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1365 GCN5-related N-acetyltransferase YP_001960052.1 PFAM: sodium/hydrogen exchanger; KEGG: sil:SPO2079 Na(+)/H(+) antiporter, homolog YP_001960053.1 KEGG: cch:Cag_1554 hypothetical protein YP_001960054.1 KEGG: plt:Plut_0666 hypothetical protein YP_001960055.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: maq:Maqu_3521 multi antimicrobial extrusion protein MatE YP_001960057.1 PFAM: DoxX family protein; KEGG: gme:Gmet_3019 methylamine utilization protein MauE YP_001960058.1 PFAM: Rhodanese domain protein; KEGG: gsu:GSU0505 rhodanese-like domain protein YP_001960059.1 KEGG: cte:CT0707 hypothetical protein YP_001960060.1 KEGG: cch:Cag_0581 hypothetical protein YP_001960061.1 PFAM: protein of unknown function DUF45; KEGG: pvi:Cvib_1130 protein of unknown function DUF45 YP_001960062.1 PFAM: major facilitator superfamily MFS_1; KEGG: atc:AGR_C_4286 hypothetical protein YP_001960063.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA1805 HlyD family secretion protein YP_001960064.1 KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001960065.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: azo:azo0654 outer membrane efflux protein YP_001960066.1 PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: pfo:PflO1_1463 VCBS YP_001960068.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0957 hypothetical protein YP_001960069.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cch:Cag_0956 prevent-host-death protein YP_001960070.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: pvi:Cvib_0091 ADP-ribosylation/crystallin J1 YP_001960071.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: esa:ESA_pESA3p05523 hypothetical protein YP_001960072.1 KEGG: esa:ESA_pESA3p05522 hypothetical protein YP_001960073.1 KEGG: esa:ESA_pESA3p05521 hypothetical protein YP_001960074.1 PFAM: restriction endonuclease; KEGG: dde:Dde_1858 restriction endonuclease-like YP_001960075.1 KEGG: dvu:DVU2019 hypothetical protein YP_001960076.1 PFAM: PglZ domain protein; KEGG: dvu:DVU2020 hypothetical protein YP_001960077.1 KEGG: dvu:DVU2022 hypothetical protein YP_001960078.1 KEGG: dvu:DVU2023 hypothetical protein YP_001960079.1 KEGG: dvu:DVU2024 hypothetical protein YP_001960080.1 KEGG: dvu:DVU2025 hypothetical protein YP_001960081.1 PFAM: Domain of unknown function DUF1788; KEGG: dvu:DVU2026 hypothetical protein YP_001960082.1 PFAM: Protein of unkown function DUF1819 inner membrane; KEGG: maq:Maqu_0555 hypothetical protein YP_001960083.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: dno:DNO_0183 conserved hypothetical protein VrlI YP_001960084.1 PFAM: AIG2 family protein; KEGG: dno:DNO_0184 conserved hypothetical protein VrlH YP_001960085.1 KEGG: dde:Dde_1864 glucosamine 6-phosphate synthetase-like YP_001960086.1 KEGG: sfu:Sfum_3841 hypothetical protein YP_001960088.1 PFAM: protein of unknown function DUF179; KEGG: cte:CT0663 transcriptional regulator YP_001960089.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: plt:Plut_0636 bacterioferritin comigratory protein, thiol peroxidase YP_001960090.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_0635 NUDIX/MutT family protein YP_001960091.1 KEGG: xau:Xaut_3311 conserved hypothetical protein, possilbly involved in molybdenum cofactor biosynthesis YP_001960092.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_1145 MscS mechanosensitive ion channel YP_001960093.1 KEGG: pvi:Cvib_1146 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein YP_001960094.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pvi:Cvib_1147 two component transcriptional regulator, winged helix family YP_001960095.1 KEGG: cte:CT0655 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_001960096.1 KEGG: cte:CT0653 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_001960097.1 PFAM: ferredoxin; KEGG: cte:CT0651 chlorosome envelope protein J YP_001960098.1 KEGG: tth:TTC1089 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_001960099.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: plt:Plut_0627 alanine dehydrogenase YP_001960100.1 PFAM: Rab GTPase activator; amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0649 carotenoid isomerase YP_001960101.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001960102.1 KEGG: pvi:Cvib_1155 transmembrane anti-sigma factor YP_001960103.1 PFAM: regulatory protein ArsR; KEGG: pvi:Cvib_1156 transcriptional regulator, ArsR family YP_001960105.1 PFAM: heat shock protein Hsp20; KEGG: plt:Plut_0622 heat shock protein, HSP20 family YP_001960106.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001960107.1 KEGG: cch:Cag_1894 photosystem P840 reaction center protein PscD YP_001960108.1 TIGRFAM: tol-pal system protein YbgF; KEGG: pvi:Cvib_1161 tetratricopeptide domain protein YP_001960109.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein YP_001960110.1 PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller YP_001960111.1 KEGG: cte:CT0635 hypothetical protein YP_001960112.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein YP_001960113.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT0633 ExbB/TolQ family protein YP_001960114.1 PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: plt:Plut_0610 membrane protein YP_001960115.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001960116.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: plt:Plut_0608 acetolactate synthase, large subunit, biosynthetic type YP_001960117.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001960118.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001960119.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001960120.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001960121.1 KEGG: cch:Cag_1900 3-isopropylmalate dehydratase; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_001960122.1 PFAM: aconitate hydratase domain protein; KEGG: cte:CT0613 3-isopropylmalate dehydratase small subunit YP_001960123.1 KEGG: cte:CT0612 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_001960124.1 PFAM: proteinase inhibitor I4 serpin; KEGG: mem:Memar_0460 proteinase inhibitor I4, serpin YP_001960125.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: plt:Plut_0528 exonuclease YP_001960126.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cte:CT1508 hypothetical protein YP_001960127.1 PFAM: peptidase M48 Ste24p; KEGG: cte:CT1509 CAAX prenyl protease 1 YP_001960128.1 KEGG: tva:TVAG_053080 hypothetical protein Pfam: Myosin_tail_1 Filament bZIP_1 PROSITE: GLU_RICH LYS_RICH YP_001960129.1 PFAM: Na+/Picotransporter; KEGG: rba:RB11050 NptA protein YP_001960130.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1510 carbon-nitrogen hydrolase family protein YP_001960131.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_001960132.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cte:CT1512 thioredoxin reductase YP_001960133.1 KEGG: cte:CT1513 hypothetical protein YP_001960134.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001960135.1 KEGG: pvi:Cvib_0837 hypothetical protein YP_001960136.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cte:CT2083 hypothetical protein YP_001960137.1 PFAM: conserved hypothetical protein; KEGG: cte:CT2200 hypothetical protein YP_001960138.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: msm:MSMEG_5593 pyruvate dehydrogenase YP_001960139.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: mma:MM_2640 magnesium and cobalt transport protein CorA YP_001960140.1 PFAM: conserved hypothetical protein; KEGG: hne:HNE_0896 hypothetical protein YP_001960141.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rca:Rcas_3954 Na+/Ca+ antiporter, CaCA family YP_001960143.1 KEGG: bid:Bind_3565 hypothetical protein YP_001960144.1 KEGG: hch:HCH_01503 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase YP_001960145.1 KEGG: cte:CT1527 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_001960146.1 PFAM: pyruvate carboxyltransferase; KEGG: cch:Cag_1229 homocitrate synthase YP_001960147.1 KEGG: cte:CT1529 nitrogen fixation specific regulatory protein NifA; TIGRFAM: Nif-specific regulatory protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001960148.1 KEGG: cak:Caul_0779 hypothetical protein YP_001960149.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: psa:PST_0946 large conductance mechanosensitive channel protein YP_001960150.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_001960151.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II YP_001960152.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II YP_001960153.1 KEGG: cte:CT1536 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001960154.1 KEGG: plt:Plut_1532 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_001960155.1 KEGG: plt:Plut_1533 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_001960156.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cch:Cag_1250 nitrogenase iron-molybdenum cofactor biosynthesis protein NifN YP_001960157.1 KEGG: cte:CT1540 NifB protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001960158.1 KEGG: cch:Cag_1252 ferredoxin, 2Fe-2S YP_001960159.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator YP_001960160.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cte:CT1792 hydrogenase expression/formation protein HypE YP_001960161.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: cte:CT1794 hydrogenase expression/formation protein HypD YP_001960162.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cte:CT1795 hydrogenase assembly chaperone HypC/HupF YP_001960163.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cch:Cag_0533 hydrogenase maturation protein HypF YP_001960164.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1798 hydrogenase accessory protein HypB YP_001960165.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: cte:CT1799 hydrogenase expression/formation protein HupA YP_001960166.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001960167.1 KEGG: cte:CT1801 hypothetical protein YP_001960168.1 KEGG: pvi:Cvib_0545 hypothetical protein YP_001960169.1 KEGG: cte:CT1805 hypothetical protein YP_001960170.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_0542 Na+/solute symporter YP_001960171.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001960172.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT1808 TPR domain protein YP_001960173.1 KEGG: cte:CT1809 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein YP_001960174.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001960175.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cch:Cag_1347 TatD-related deoxyribonuclease YP_001960176.1 SMART: Tetratricopeptide domain protein; KEGG: cte:CT1812 hypothetical protein YP_001960177.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cte:CT1813 peptidyl-prolyl cis-trans isomerase, cyclophilin-type YP_001960178.1 PFAM: alanine racemase domain protein; KEGG: cch:Cag_1350 hypothetical protein YP_001960180.1 PFAM: aminotransferase class I and II; KEGG: aba:Acid345_1458 aminotransferase, class I and II YP_001960181.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001960182.1 KEGG: cch:Cag_1355 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_001960184.1 PFAM: Hpt domain protein; KEGG: dde:Dde_0544 periplasmic sensor hybrid histidine kinase YP_001960185.1 KEGG: cte:CT1821 ABC transporter, ATP-binding protein CydD; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_001960186.1 KEGG: cte:CT1822 ABC transporter, ATP-binding protein CydC; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_001960187.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: pvi:Cvib_0516 lipocalin family protein YP_001960188.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001960189.1 PFAM: glycosyl transferase family 39; KEGG: plt:Plut_1792 hypothetical protein YP_001960190.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related YP_001960191.1 PFAM: glycosyl transferase family 39; KEGG: cch:Cag_0606 hypothetical protein YP_001960192.1 PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0512 glycosyl transferase, family 2 YP_001960193.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0361 hypothetical protein YP_001960194.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: pvi:Cvib_0510 single-stranded-DNA-specific exonuclease RecJ YP_001960195.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_001960196.1 PFAM: metallophosphoesterase; KEGG: pvi:Cvib_0508 metallophosphoesterase YP_001960197.1 PFAM: Pirin domain protein; KEGG: sat:SYN_02006 pirin YP_001960198.1 KEGG: cte:CT0352 hypothetical protein YP_001960199.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001960200.1 PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa YP_001960201.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mxa:MXAN_3382 cation efflux family protein YP_001960202.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001960203.1 TIGRFAM: rod shape-determining protein MreD; KEGG: cte:CT0567 hypothetical protein YP_001960204.1 KEGG: plt:Plut_0571 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_001960205.1 PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0565 oxidoreductase, FAD-binding YP_001960206.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001960207.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001960208.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_001960209.1 PFAM: SNARE associated Golgi protein; KEGG: plt:Plut_0566 DedA family protein YP_001960210.1 PFAM: protein of unknown function DUF368; KEGG: pin:Ping_0693 inner membrane protein DUF368 YP_001960211.1 KEGG: pvi:Cvib_1210 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_001960212.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001960213.1 PFAM: Peptidase M23; KEGG: plt:Plut_0562 membrane-bound metallopeptidase-like YP_001960214.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001960215.1 KEGG: nmn:NMCC_1381 Ag473 YP_001960216.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_001960217.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: cte:CT0545 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_001960218.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001960219.1 KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein YP_001960220.1 PFAM: glycosyl transferase group 1; KEGG: plt:Plut_0552 glycosyl transferase YP_001960221.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_001960222.1 PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein YP_001960223.1 KEGG: cte:CT2270 hypothetical protein YP_001960224.1 PFAM: protein of unknown function UPF0047; KEGG: cch:Cag_1417 hypothetical protein YP_001960225.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001960226.1 PFAM: phosphatidylglycerophosphatase A; KEGG: pvi:Cvib_0497 phosphatidylglycerophosphatase YP_001960227.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT0335 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001960228.1 PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cte:CT0334 DNA mismatch binding protein MutS2 YP_001960229.1 PFAM: DsrE family protein; KEGG: cch:Cag_1216 hypothetical protein YP_001960230.1 PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein YP_001960231.1 KEGG: cch:Cag_1214 hypothetical protein YP_001960233.1 KEGG: cch:Cag_1582 heterodisulfide reductase YP_001960234.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; FAD dependent oxidoreductase; KEGG: cte:CT0867 heterodisulfide reductase, subunit A/hydrogenase, delta subunit YP_001960235.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite YP_001960236.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_1586 adenylylsulfate reductase, beta subunit YP_001960237.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_001960238.1 KEGG: plt:Plut_0031 hypothetical protein YP_001960239.1 KEGG: cte:CT0860 hypothetical protein YP_001960240.1 PFAM: protein of unknown function DUF81; KEGG: cch:Cag_1963 hypothetical protein YP_001960241.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: plt:Plut_0050 uroporphyrin-III C-methyltransferase-like YP_001960242.1 TIGRFAM: siroheme synthase; KEGG: cte:CT2239 porphyrin biosynthesis protein YP_001960243.1 PFAM: Polysulphide reductase NrfD; KEGG: cte:CT2240 polysulfide reductase, subunit C YP_001960244.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT2241 polysulfide reductase, subunit B YP_001960245.1 KEGG: mta:Moth_1605 cytochrome c family protein YP_001960246.1 KEGG: cch:Cag_1947 DsrK protein YP_001960247.1 PFAM: Nitrate reductase gamma subunit; KEGG: cte:CT2244 DsrM protein YP_001960248.1 KEGG: cte:CT2245 hypothetical protein YP_001960249.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cte:CT0857 DsrH protein YP_001960250.1 TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cte:CT0856 DsrF protein YP_001960251.1 TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cch:Cag_1952 DsrE protein YP_001960252.1 KEGG: plt:Plut_0039 hypothetical protein YP_001960253.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT2247 iron-sulfur cluster-binding protein, GltD family YP_001960254.1 KEGG: plt:Plut_0037 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_001960255.1 KEGG: pvi:Cvib_0039 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_001960256.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: cch:Cag_1957 sulfite reductase, dissimilatory-type, gamma subunit YP_001960257.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: pvi:Cvib_0037 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) YP_001960258.1 PFAM: SirA family protein; KEGG: pvi:Cvib_0036 SirA family protein YP_001960259.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0845 hypothetical protein YP_001960260.1 PFAM: Rhodanese domain protein; KEGG: cte:CT0843 hypothetical protein YP_001960261.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: plt:Plut_2042 twin-arginine translocation pathway signal YP_001960262.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_2043 polysulfide reductase, subunit B YP_001960263.1 PFAM: Polysulphide reductase NrfD; KEGG: plt:Plut_2044 polysulfide reductase, subunit C YP_001960264.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: pvi:Cvib_1688 cytoplasmic chaperone TorD family protein YP_001960265.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001960266.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001960267.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001960268.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cch:Cag_0481 phosphoesterase PHP-like YP_001960269.1 PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140 YP_001960270.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0326 ABC transporter, ATP-binding protein YP_001960271.1 PFAM: Mammalian cell entry related domain protein; KEGG: cte:CT0325 VpsC protein YP_001960272.1 PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease YP_001960273.1 PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: plt:Plut_0435 gamma-carotene desaturase YP_001960274.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: cte:CT0322 iron-sulfur cluster-binding protein YP_001960275.1 involved in de novo purine biosynthesis YP_001960276.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pvi:Cvib_0482 phosphoribosylglycinamide formyltransferase YP_001960277.1 PFAM: Radical SAM domain protein; KEGG: pvi:Cvib_0481 radical SAM domain protein YP_001960278.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0317 glycosyl transferase YP_001960279.1 KEGG: cnb:CNBG3160 hypothetical protein YP_001960280.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_001960281.1 PFAM: protein of unknown function DUF214; KEGG: cch:Cag_0527 cell division protein YP_001960282.1 KEGG: cch:Cag_0526 hypothetical protein YP_001960283.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cte:CT0313 amidophosphoribosyltransferase YP_001960284.1 KEGG: plt:Plut_0424 transcriptional regulators, TraR/DksA family YP_001960285.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_001960286.1 KEGG: plt:Plut_0422 hypothetical protein YP_001960287.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase YP_001960289.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0515 dTDP-4-dehydrorhamnose reductase YP_001960290.1 KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001960291.1 KEGG: ana:all1091 unknown protein YP_001960292.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cte:CT0305 glucose-1-phosphate thymidylyltransferase YP_001960293.1 KEGG: pvi:Cvib_0835 hypothetical protein YP_001960294.1 KEGG: nar:Saro_2540 hypothetical protein YP_001960296.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pvi:Cvib_0632 3'(2'),5'-bisphosphate nucleotidase YP_001960297.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001960298.1 KEGG: plt:Plut_0421 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_001960299.1 SMART: AAA ATPase; KEGG: cch:Cag_0509 hypothetical protein YP_001960300.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pde:Pden_4824 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_001960302.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: sus:Acid_3350 virulence associated protein C YP_001960303.1 KEGG: rrs:RoseRS_2013 hypothetical protein YP_001960304.1 KEGG: cch:Cag_1231 hypothetical protein YP_001960305.1 PFAM: S23 ribosomal protein; KEGG: ava:Ava_C0039 S23 ribosomal YP_001960306.1 PFAM: adenylylsulfate kinase; KEGG: pvi:Cvib_0635 adenylylsulfate kinase YP_001960307.1 PFAM: protein of unknown function DUF218; KEGG: cch:Cag_0148 hypothetical protein YP_001960308.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase YP_001960310.1 KEGG: pvi:Cvib_0469 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001960311.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cte:CT0305 glucose-1-phosphate thymidylyltransferase YP_001960312.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_0649 NAD-dependent epimerase/dehydratase YP_001960313.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: plt:Plut_0419 dTDP-glucose 4,6-dehydratase YP_001960314.1 KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_001960315.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cte:CT0305 glucose-1-phosphate thymidylyltransferase YP_001960316.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001960317.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pvi:Cvib_0984 transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001960318.1 PFAM: glycosyl transferase family 2; KEGG: bth:BT_1645 glycosyltransferase YP_001960319.1 PFAM: glycosyl transferase family 11; KEGG: gfo:GFO_0559 alpha-1,2-fucosyltransferase YP_001960320.1 PFAM: glycosyl transferase family 2; KEGG: pca:Pcar_2592 glycosyltransferase domain protein YP_001960321.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960322.1 PFAM: cobalamin B12-binding domain protein; KEGG: ppd:Ppro_3338 glycosyl transferase, family 2 YP_001960323.1 PFAM: O-antigen polymerase; KEGG: cac:CAC3067 predicted membrane protein YP_001960324.1 PFAM: polysaccharide biosynthesis protein; KEGG: gka:GK3317 O-antigen transporter YP_001960325.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: pde:Pden_1296 DegT/DnrJ/EryC1/StrS aminotransferase YP_001960326.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: cps:CPS_4200 NAD-dependent epimerase/dehydratase family protein YP_001960327.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: mma:MM_0659 GDP-mannose 4,6 dehydratase YP_001960328.1 KEGG: sfu:Sfum_0777 polysaccharide biosynthesis protein YP_001960329.1 KEGG: fjo:Fjoh_1181 S23 ribosomal protein YP_001960330.1 PFAM: YcfA family protein; KEGG: gme:Gmet_1322 YcfA-like YP_001960331.1 KEGG: gme:Gmet_1321 hypothetical protein YP_001960332.1 KEGG: cch:Cag_0660 hypothetical protein YP_001960333.1 KEGG: ana:asl3973 unknown protein YP_001960334.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein YP_001960335.1 KEGG: cyt:cce_3112 hypothetical protein YP_001960336.1 KEGG: cyb:CYB_1721 hypothetical protein YP_001960337.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: chu:CHU_0210 hypothetical protein YP_001960338.1 PFAM: protein of unknown function UPF0150; KEGG: cch:Cag_0609 hypothetical protein YP_001960339.1 KEGG: dsy:DSY3469 hypothetical protein YP_001960340.1 PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein YP_001960341.1 PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1379 hypothetical protein YP_001960342.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein YP_001960343.1 KEGG: cch:Cag_0858 hypothetical protein YP_001960344.1 PFAM: YcfA family protein; KEGG: gme:Gmet_1322 YcfA-like YP_001960345.1 KEGG: gme:Gmet_1321 hypothetical protein YP_001960346.1 KEGG: cch:Cag_0660 hypothetical protein YP_001960347.1 KEGG: ana:asl3973 unknown protein YP_001960348.1 KEGG: cyt:cce_3112 hypothetical protein YP_001960349.1 KEGG: cyb:CYB_1721 hypothetical protein YP_001960350.1 PFAM: protein of unknown function UPF0150; KEGG: cch:Cag_0609 hypothetical protein YP_001960351.1 PFAM: protein of unknown function DUF86; KEGG: chy:CHY_2535 hypothetical protein YP_001960352.1 PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1379 hypothetical protein YP_001960353.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein YP_001960354.1 PFAM: PilT protein domain protein; KEGG: rpa:RPA3449 PilT protein, N-terminal YP_001960355.1 KEGG: tde:TDE0220 hypothetical protein YP_001960356.1 KEGG: cch:Cag_0858 hypothetical protein YP_001960357.1 PFAM: PilT protein domain protein; KEGG: plt:Plut_1876 plasmid stabilization protein StbB-like YP_001960358.1 KEGG: plt:Plut_1877 hypothetical protein YP_001960359.1 KEGG: plt:Plut_1874 hypothetical protein YP_001960360.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960361.1 KEGG: syp:SYNPCC7002_C0014 hypothetical protein YP_001960362.1 KEGG: mhu:Mhun_3224 hypothetical protein YP_001960363.1 PFAM: protein of unknown function DUF86; KEGG: plt:Plut_1815 hypothetical protein YP_001960364.1 PFAM: DNA polymerase beta domain protein region; KEGG: plt:Plut_1816 hypothetical protein YP_001960365.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_0834 S23 ribosomal protein YP_001960366.1 PFAM: glycosyl transferase family 4; KEGG: hch:HCH_02401 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_001960367.1 KEGG: plt:Plut_1886 glycosyl transferase, family 4 YP_001960368.1 KEGG: plt:Plut_1887 hypothetical protein YP_001960369.1 KEGG: pvi:Cvib_1075 lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_001960370.1 KEGG: plt:Plut_0763 hypothetical protein YP_001960373.1 KEGG: dre:322522 alpha-2-HS-glycoprotein YP_001960374.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pvi:Cvib_1499 alpha amylase, catalytic region YP_001960376.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: mmr:Mmar10_2352 excinuclease ABC, C subunit domain protein YP_001960378.1 PFAM: Cytochrome b/b6 domain; KEGG: cch:Cag_0395 cytochrome b-c complex, cytochrome b subunit YP_001960379.1 PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: plt:Plut_1719 plastoquinol--plastocyanin reductase YP_001960380.1 PFAM: hydroxyneurosporene synthase; KEGG: pvi:Cvib_1502 hydroxyneurosporene synthase YP_001960381.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001960382.1 KEGG: cte:CT0297 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_001960383.1 KEGG: cte:CT0296 hypothetical protein YP_001960384.1 PFAM: histone family protein DNA-binding protein; KEGG: pvi:Cvib_1506 histone family protein DNA-binding protein YP_001960385.1 KEGG: cte:CT0487 hypothetical protein YP_001960386.1 KEGG: pvi:Cvib_1508 hypothetical protein YP_001960387.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001960388.1 KEGG: pvi:Cvib_1510 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001960389.1 KEGG: pvi:Cvib_1511 hypothetical protein YP_001960390.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: plt:Plut_1730 rod shape-determining protein RodA YP_001960391.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001960392.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001960393.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001960394.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001960395.1 KEGG: cte:CT1770 hypothetical protein YP_001960397.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_1639 oxidoreductase, short-chain dehydrogenase/reductase family YP_001960398.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: pvi:Cvib_0464 ribulose 1,5-bisphosphate carboxylase large subunit YP_001960399.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: plt:Plut_0411 aldolase YP_001960400.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_0410 short chain dehydrogenase YP_001960401.1 PFAM: regulatory protein RecX; KEGG: cte:CT1778 regulatory protein RecX YP_001960402.1 Catalyzes the phosphorylation of UMP to UDP YP_001960403.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001960404.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001960405.1 forms a direct contact with the tRNA during translation YP_001960406.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001960407.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001960408.1 PFAM: protein of unknown function DUF59; KEGG: pvi:Cvib_0454 protein of unknown function DUF59 YP_001960409.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein YP_001960410.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: pvi:Cvib_0452 cell divisionFtsK/SpoIIIE YP_001960411.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001960414.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28641 hypothetical protein YP_001960415.1 KEGG: cch:Cag_0710 hypothetical protein YP_001960416.1 PFAM: protein of unknown function DUF477; KEGG: pvi:Cvib_0450 protein of unknown function DUF477 YP_001960417.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein YP_001960418.1 PFAM: LemA family protein; KEGG: cch:Cag_1774 LemA family protein YP_001960419.1 KEGG: sru:SRU_1533 hypothetical protein YP_001960420.1 KEGG: plt:Plut_0392 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001960421.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001960422.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1548 peptidase, M16 family YP_001960423.1 PFAM: band 7 protein; KEGG: pvi:Cvib_1667 SPFH domain, band 7 family protein YP_001960424.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pvi:Cvib_0444 permease YjgP/YjgQ family protein YP_001960425.1 PFAM: protein of unknown function DUF62; KEGG: cte:CT1550 hypothetical protein YP_001960426.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pvi:Cvib_0443 RNA polymerase, sigma 32 subunit, RpoH YP_001960427.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001960428.1 KEGG: plt:Plut_0385 peptidase S14, ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_001960429.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_001960430.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cte:CT1555 acetyl-CoA carboxylase carboxyl transferase subunit beta YP_001960431.1 PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15) YP_001960432.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_001960433.1 KEGG: cte:CT1558 hypothetical protein YP_001960434.1 KEGG: gvi:glr3963 thiol-disulfide interchange protein DsbD homolog YP_001960435.1 PFAM: cytochrome c assembly protein; KEGG: pvi:Cvib_1364 cytochrome c assembly protein YP_001960436.1 KEGG: cte:CT1560 hypothetical protein YP_001960437.1 KEGG: pvi:Cvib_0418 transcriptional regulator, fis family YP_001960438.1 PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0416 conserved hypothetical protein 730 YP_001960439.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_001960440.1 KEGG: cch:Cag_0299 hypothetical protein YP_001960441.1 PFAM: diacylglycerol kinase catalytic region; KEGG: cte:CT1567 BmrU protein YP_001960442.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1568 protein-tyrosine-phosphatase YP_001960443.1 KEGG: cte:CT1571 hypothetical protein YP_001960444.1 PFAM: regulatory protein LuxR; KEGG: cte:CT1571 hypothetical protein YP_001960445.1 KEGG: cte:CT1571 hypothetical protein YP_001960446.1 KEGG: cte:CT1571 hypothetical protein YP_001960447.1 PFAM: Aldehyde Dehydrogenase_; KEGG: plt:Plut_0352 aldehyde dehydrogenase family protein YP_001960449.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cch:Cag_0329 GTPase EngC YP_001960450.1 catalyzes branch migration in Holliday junction intermediates YP_001960451.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001960452.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001960453.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cch:Cag_0324 chlorophyllide reductase subunit Y YP_001960454.1 KEGG: cch:Cag_0323 hypothetical protein YP_001960455.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001960456.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001960457.1 PFAM: protein of unknown function DUF167; KEGG: cch:Cag_0319 hypothetical protein YP_001960458.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001960459.1 KEGG: cte:CT1834 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_001960460.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vvy:VV2044 sodium/alanine symporter YP_001960461.1 PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB YP_001960462.1 KEGG: pvi:Cvib_0400 hypothetical protein YP_001960463.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 tetratricopeptide TPR_2 repeat protein YP_001960464.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: cte:CT1838 menaquinone-specific isochorismate synthase YP_001960465.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cch:Cag_1700 menaquinone biosynthesis protein YP_001960466.1 PFAM: alpha/beta hydrolase fold; KEGG: plt:Plut_0329 thioesterase, menaquinone synthesis protein YP_001960467.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_001960468.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pvi:Cvib_0393 O-succinylbenzoate-CoA synthase YP_001960469.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT1848 O-succinylbenzoic acid--CoA ligase YP_001960470.1 PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF849; KEGG: cch:Cag_0981 hypothetical protein YP_001960471.1 PFAM: RimK domain protein ATP-grasp; KEGG: cch:Cag_0947 D-alanine-D-alanine ligase and related ATP-grasp enzyme-like YP_001960472.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_5550 NADH:flavin oxidoreductase/NADH oxidase YP_001960473.1 KEGG: cte:CT1849 hypothetical protein YP_001960474.1 PFAM: dihydrodipicolinate reductase; KEGG: plt:Plut_0324 dihydrodipicolinate reductase YP_001960475.1 KEGG: fjo:Fjoh_0204 hypothetical protein YP_001960476.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pvi:Cvib_0389 chromosome segregation DNA-binding protein YP_001960477.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cte:CT1852 ATPase, ParA family YP_001960478.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cte:CT1853 DNA-3-methyladenine glycosylase YP_001960479.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pvi:Cvib_0386 magnesium transporter YP_001960480.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cch:Cag_1800 electron transfer flavoprotein-ubiquinone oxidoreductase YP_001960481.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001960482.1 PFAM: phospholipase/Carboxylesterase; KEGG: cte:CT1856 serine esterase YP_001960483.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_001960485.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: pvi:Cvib_0380 peptidoglycan-binding domain 1 protein YP_001960486.1 KEGG: pvi:Cvib_0379 hypothetical protein YP_001960487.1 KEGG: plt:Plut_0059 hypothetical protein YP_001960488.1 PFAM: protein of unknown function DUF975; KEGG: cte:CT0738 hypothetical protein YP_001960489.1 PFAM: Rhodanese domain protein; KEGG: ana:alr2407 hypothetical protein YP_001960490.1 KEGG: pvi:Cvib_0377 hypothetical protein YP_001960491.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_0174 MscS mechanosensitive ion channel YP_001960492.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: cte:CT1870 transketolase YP_001960493.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: pvi:Cvib_0376 6-phosphogluconolactonase YP_001960494.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001960495.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001960496.1 KEGG: plt:Plut_0305 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein YP_001960497.1 PFAM: domain of unknown function DUF1745; KEGG: ana:alr4881 unknown protein YP_001960498.1 PFAM: extracellular solute-binding protein family 3; Ion transport 2 domain protein; SMART: ionotropic glutamate receptor; KEGG: pvi:Cvib_0578 extracellular solute-binding protein, family 3 YP_001960499.1 PFAM: protein of unknown function DUF541; KEGG: vpa:VP0374 hypothetical protein YP_001960500.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001960501.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA2316 enoyl-CoA hydratase YP_001960502.1 KEGG: cte:CT1876 hypothetical protein YP_001960503.1 KEGG: cya:CYA_0261 hypothetical protein YP_001960505.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT1882 glycosyl transferase YP_001960506.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: plt:Plut_0303 hypothetical protein YP_001960507.1 PFAM: surface antigen msp4 family protein; KEGG: plt:Plut_0302 outer surface protein YP_001960508.1 KEGG: plt:Plut_0302 outer surface protein YP_001960509.1 PFAM: Patatin; KEGG: plt:Plut_0301 hypothetical protein YP_001960511.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cte:CT1886 aldehyde dehydrogenase YP_001960512.1 PFAM: peptidase S16 lon domain protein; KEGG: plt:Plut_0298 ATP-dependent protease YP_001960513.1 KEGG: plt:Plut_0297 hypothetical protein YP_001960514.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pvi:Cvib_0361 tRNA/rRNA methyltransferase (SpoU) YP_001960515.1 KEGG: cte:CT1889 hypothetical protein YP_001960516.1 PFAM: peptidase U32; KEGG: pvi:Cvib_0359 peptidase U32 YP_001960518.1 KEGG: cte:CT1891 hydrogenase/sulfur reductase, beta subunit YP_001960519.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cch:Cag_1567 hydrogenase/sulfur reductase, gamma subunit YP_001960520.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cte:CT1893 hydrogenase/sulfur reductase, delta subunit YP_001960521.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cte:CT1894 hydrogenase/sulfur reductase, alpha subunit YP_001960522.1 KEGG: tde:TDE2679 hypothetical protein YP_001960523.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mem:Memar_1765 peptidylprolyl isomerase, FKBP-type YP_001960524.1 PFAM: surface antigen msp4 family protein; KEGG: pvi:Cvib_1533 porin, opacity type YP_001960525.1 PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein YP_001960526.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_0248 protoporphyrinogen oxidase YP_001960527.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pvi:Cvib_0355 acetyltransferase, CysE/LacA/LpxA/NodL family YP_001960528.1 PFAM: plasmid stabilization system; KEGG: gsu:GSU0055 hypothetical protein YP_001960529.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein YP_001960531.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960533.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960534.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: nmu:Nmul_A2404 NAD-dependent epimerase/dehydratase YP_001960535.1 PFAM: glycosyl transferase family 2; KEGG: bth:BT_1709 glycosyltransferase YP_001960536.1 KEGG: she:Shewmr4_0050 hypothetical protein YP_001960537.1 KEGG: pvi:Cvib_0645 transposase YP_001960539.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001960540.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: pvi:Cvib_0086 helix-turn-helix, type 11 domain protein YP_001960541.1 KEGG: ppd:Ppro_2346 DNA-directed DNA polymerase; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001960542.1 KEGG: cte:CT1971 hypothetical protein YP_001960543.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001960544.1 TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; KEGG: cte:CT1971 hypothetical protein YP_001960545.1 TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: cte:CT1972 hypothetical protein YP_001960546.1 TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: cte:CT1973 hypothetical protein YP_001960547.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: cte:CT1974 hypothetical protein YP_001960548.1 TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: cte:CT1975 hypothetical protein YP_001960549.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: cte:CT1976 hypothetical protein YP_001960550.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: cte:CT1977 hypothetical protein YP_001960551.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: cte:CT1978 hypothetical protein YP_001960552.1 PFAM: HipA domain protein; KEGG: pvi:Cvib_0660 HipA domain protein YP_001960553.1 TIGRFAM: HipA N-terminal domain protein; KEGG: pvi:Cvib_0661 hypothetical protein YP_001960554.1 TIGRFAM: transcriptional regulator, y4mF family; PFAM: helix-turn-helix domain protein; KEGG: pvi:Cvib_0662 transcriptional regulator, XRE family YP_001960556.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1901 ABC transporter, ATP-binding protein YP_001960557.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1903 BchE/P-methylase family protein YP_001960558.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: pvi:Cvib_0352 metal dependent phosphohydrolase YP_001960559.1 KEGG: cte:CT1907 hypothetical protein YP_001960560.1 PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1627 3-oxoadipate enol-lactonase YP_001960561.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001960562.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001960563.1 KEGG: cte:CT1920 hypothetical protein YP_001960564.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: pvi:Cvib_0346 cysteine synthase YP_001960566.1 KEGG: cte:CT1922 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_001960567.1 KEGG: cte:CT1923 ComEA-related protein YP_001960568.1 KEGG: cte:CT1924 hypothetical protein YP_001960569.1 KEGG: cte:CT1928 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region YP_001960570.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: pvi:Cvib_0341 TIM-barrel protein, nifR3 family YP_001960571.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001960572.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: cte:CT1931 dihydroflavonol 4-reductase family YP_001960573.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960574.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1932 peptidase, M16 family YP_001960575.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; KEGG: cte:CT1934 trigger factor YP_001960576.1 KEGG: plt:Plut_0270 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_001960577.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pvi:Cvib_0334 dihydroneopterin aldolase YP_001960578.1 KEGG: cch:Cag_0230 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_001960579.1 KEGG: cte:CT1939 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001960580.1 KEGG: plt:Plut_0266 hypothetical protein YP_001960581.1 PFAM: bacteriochlorophyll C binding protein; KEGG: pvi:Cvib_0330 bacteriochlorophyll C binding protein YP_001960582.1 KEGG: plt:Plut_0264 chlorosome envelope protein C YP_001960584.1 KEGG: cte:CT1945 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_001960585.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cte:CT1946 dihydroorotate dehydrogenase, electron transfer subunit YP_001960586.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cte:CT1947 single-strand binding protein YP_001960587.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: plt:Plut_0260 DNA polymerase III, delta subunit YP_001960588.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT1949 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_001960589.1 PFAM: glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: pvi:Cvib_0322 8-amino-7-oxononanoate synthase YP_001960590.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pvi:Cvib_0321 TonB-dependent receptor, plug YP_001960591.1 KEGG: cte:CT1955 magnesium-chelatase, bacteriochlorophyll c-specific subunit; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_001960593.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_001960594.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_001960595.1 KEGG: pvi:Cvib_0316 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001960596.1 PFAM: heat shock protein Hsp20; KEGG: pvi:Cvib_0315 heat shock protein HSP20 YP_001960597.1 KEGG: plt:Plut_0249 hypothetical protein YP_001960598.1 KEGG: pca:Pcar_1487 predicted membrane protein YP_001960599.1 PFAM: Peptidase M23; KEGG: pvi:Cvib_0313 peptidase M23B YP_001960600.1 KEGG: plt:Plut_1100 hypothetical protein YP_001960602.1 PFAM: Class I peptide chain release factor; KEGG: vfi:VFA1155 hypothetical protein YP_001960603.1 PFAM: protein of unknown function DUF937; KEGG: sun:SUN_1851 hypothetical protein YP_001960604.1 PFAM: WD-40 repeat protein; KEGG: cte:CT1986 WD-repeat family protein YP_001960606.1 PFAM: PilT protein domain protein; KEGG: rfe:RF_0701 toxin of toxin-antitoxin system YP_001960607.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_2397 prevent-host-death family protein YP_001960608.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1987 glycosyl transferase YP_001960609.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001960610.1 PFAM: metallophosphoesterase; KEGG: cte:CT1989 hypothetical protein YP_001960611.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cte:CT1990 hypothetical protein YP_001960612.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria YP_001960613.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria YP_001960614.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001960617.1 PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: plt:Plut_0236 IscU protein YP_001960618.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pvi:Cvib_0301 aminotransferase, class V YP_001960619.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_0234 cysteine synthase K/M/A YP_001960620.1 SMART: helix-turn-helix domain protein; KEGG: plt:Plut_0233 hypothetical protein YP_001960621.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: plt:Plut_0231 CBS YP_001960622.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001960623.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: pvi:Cvib_0747 serine-type D-Ala-D-Ala carboxypeptidase YP_001960624.1 PFAM: protein of unknown function UPF0118; KEGG: pvi:Cvib_0294 protein of unknown function UPF0118 YP_001960625.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001960626.1 KEGG: pvi:Cvib_0292 phosphoribosyltransferase YP_001960627.1 PFAM: ROK family protein; KEGG: cte:CT2007 glucokinase YP_001960628.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001960629.1 KEGG: plt:Plut_0223 hypothetical protein YP_001960630.1 KEGG: cte:CT2010 oxygen-independent coproporphyrinogen III oxidase, TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001960631.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cte:CT2011 histidinol phosphatase-related protein YP_001960632.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_001960633.1 KEGG: cte:CT2013 hypothetical protein YP_001960634.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase YP_001960635.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dde:Dde_0970 fic family protein YP_001960636.1 PFAM: TfoX domain protein; KEGG: bth:BT_2340 hypothetical protein YP_001960637.1 KEGG: shn:Shewana3_0478 mitomycin resistance protein YP_001960638.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: ret:RHE_PC00002 hypothetical protein YP_001960639.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pin:Ping_2901 L-2-haloalkanoic acid dehalogenase, HAD superfamily protein YP_001960640.1 KEGG: cch:Cag_1130 hypothetical protein YP_001960641.1 KEGG: cch:Cag_1130 hypothetical protein YP_001960642.1 KEGG: cch:Cag_1129 hypothetical protein YP_001960643.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_001960644.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001960645.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_001960646.1 PFAM: protein of unknown function DUF77; KEGG: cte:CT2153 hypothetical protein YP_001960647.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001960648.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001960649.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001960651.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT2159 mannose-1-phosphate guanylyltransferase YP_001960652.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001960653.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001960654.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001960655.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001960656.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001960657.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001960658.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001960659.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001960660.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pvi:Cvib_0267 methionine aminopeptidase, type I YP_001960661.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001960662.1 late assembly protein YP_001960663.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001960664.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001960665.1 binds 5S rRNA along with protein L5 and L25 YP_001960666.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001960667.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001960668.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001960669.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001960670.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001960671.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001960672.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001960673.1 one of the stabilizing components for the large ribosomal subunit YP_001960674.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001960675.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001960676.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001960677.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001960678.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001960679.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001960680.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001960681.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001960682.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001960683.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001960684.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001960685.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001960686.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001960687.1 KEGG: plt:Plut_0174 hypothetical protein YP_001960688.1 KEGG: cte:CT2205 hypothetical protein YP_001960689.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter YP_001960690.1 PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1867 glycosyl transferase YP_001960691.1 PFAM: glycosyl transferase group 1; KEGG: plt:Plut_0168 glycosyl transferase YP_001960692.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pvi:Cvib_0233 phosphotransferase system, phosphocarrier protein HPr YP_001960693.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_001960694.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001960695.1 PFAM: Rhodopirellula transposase family protein; KEGG: eba:ebA5952 hypothetical protein YP_001960696.1 PFAM: Exonuclease VII small subunit; KEGG: plt:Plut_0164 exonuclease VII, small subunit YP_001960697.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001960698.1 KEGG: pvi:Cvib_0228 hypothetical protein YP_001960699.1 PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: plt:Plut_0161 ATPase YP_001960700.1 PFAM: ferredoxin-dependent glutamate synthase; Rieske [2Fe-2S] domain protein; KEGG: jan:Jann_3121 ferredoxin-dependent glutamate synthase YP_001960701.1 KEGG: cte:CT2280 hypothetical protein YP_001960703.1 PFAM: von Willebrand factor type A; KEGG: cte:CT2279 hypothetical protein YP_001960704.1 PFAM: von Willebrand factor type A; KEGG: cte:CT2278 hypothetical protein YP_001960705.1 KEGG: plu:plu3890 hypothetical protein YP_001960706.1 PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein YP_001960708.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_001960709.1 KEGG: plt:Plut_0856 hypothetical protein YP_001960710.1 PFAM: protein of unknown function nitrogen fixation; KEGG: plt:Plut_0887 hypothetical protein YP_001960711.1 KEGG: plt:Plut_0875 hypothetical protein YP_001960712.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0874 ATPase YP_001960713.1 PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: plt:Plut_0873 ATPase YP_001960714.1 KEGG: plt:Plut_0872 outer membrane protein-like YP_001960715.1 PFAM: protein of unknown function DUF1568; KEGG: pvi:Cvib_1216 protein of unknown function DUF1568 YP_001960716.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: ava:Ava_4177 protein of unknown function DUF196 YP_001960717.1 KEGG: rca:Rcas_2681 hypothetical protein YP_001960718.1 PFAM: protein of unknown function DUF1568; KEGG: pvi:Cvib_1216 protein of unknown function DUF1568 YP_001960719.1 KEGG: chy:CHY_0526 hypothetical protein YP_001960721.1 PFAM: PilT protein domain protein; KEGG: gur:Gura_0713 PilT protein domain protein YP_001960722.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: gur:Gura_0714 prevent-host-death family protein YP_001960723.1 KEGG: rha:RHA1_ro06717 hypothetical protein YP_001960724.1 KEGG: cte:CT0061 hypothetical protein YP_001960725.1 SMART: von Willebrand factor type A; KEGG: cte:CT0062 hypothetical protein YP_001960726.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cte:CT0063 magnesium chelatase, subunit I YP_001960727.1 KEGG: pvi:Cvib_0225 hypothetical protein YP_001960728.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001960729.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mag:amb2384 peptidyl-prolyl cis-trans isomerase YP_001960730.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pvi:Cvib_0223 protein translocase subunit YajC YP_001960731.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001960732.1 KEGG: cte:CT0071 hypothetical protein YP_001960733.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT0072 BchE/P-methylase family protein YP_001960734.1 PFAM: cytochrome c class I; KEGG: cch:Cag_0103 cytochrome c-555, membrane-bound YP_001960735.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0219 cytochrome c, class I YP_001960736.1 PFAM: Bile acid:sodium symporter; KEGG: mvn:Mevan_1540 bile acid:sodium symporter YP_001960738.1 KEGG: plt:Plut_0151 hypothetical protein YP_001960739.1 KEGG: cte:CT0077 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_001960740.1 KEGG: cte:CT0078 hypothetical protein YP_001960741.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: tko:TK2115 molybdopterin converting factor, subunit 2 YP_001960742.1 PFAM: thiamineS protein; KEGG: gvi:gsr4366 molybdenum cofactor biosynthesis protein D YP_001960743.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cte:CT1331 molybdopterin biosynthesis protein MoeA YP_001960744.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001960746.1 TIGRFAM: arsenite oxidase, small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: ttj:TTHB128 arsenite oxidase, small subunit YP_001960747.1 TIGRFAM: arsenite oxidase, large subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ttj:TTHB127 arsenite oxidase, large subunit YP_001960748.1 KEGG: cte:CT1333 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001960749.1 PFAM: MOSC domain containing protein; KEGG: plt:Plut_1545 hypothetical protein YP_001960750.1 PFAM: transposase IS4 family protein; KEGG: dar:Daro_2223 transposase, IS4 YP_001960751.1 PFAM: transposase IS4 family protein; KEGG: plt:Plut_0436 transposase-like YP_001960752.1 KEGG: rfr:Rfer_1138 transposase, IS4 YP_001960753.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cte:CT0079 glycerophosphoryl diester phosphodiesterase YP_001960754.1 KEGG: plt:Plut_0146 hypothetical protein YP_001960755.1 KEGG: cte:CT0080 hypothetical protein YP_001960756.1 KEGG: cch:Cag_1677 Ric1 protein YP_001960757.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway YP_001960758.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_0209 UspA domain protein YP_001960759.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001960760.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: csa:Csal_1573 Na(+)-translocating NADH-quinone reductase subunit E YP_001960761.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: dol:Dole_2539 NADH:ubiquinone oxidoreductase, subunit D YP_001960762.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: spe:Spro_0955 NADH:ubiquinone oxidoreductase, subunit C YP_001960763.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001960764.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_001960765.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_0620 twin-arginine translocation pathway signal YP_001960766.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0619 NrfC protein YP_001960767.1 PFAM: Polysulphide reductase NrfD; KEGG: cch:Cag_0618 formate-dependent nitrite reductase membrane component-like YP_001960768.1 PFAM: SOUL heme-binding protein; KEGG: cte:CT1119 hypothetical protein YP_001960769.1 PFAM: conserved hypothetical protein; KEGG: bth:BT_0769 hypothetical protein YP_001960770.1 KEGG: cch:Cag_0608 hypothetical protein YP_001960771.1 KEGG: smu:SMU.591c hypothetical protein YP_001960773.1 converts 1,4-alpha-D-glucans to maltodextrin YP_001960774.1 metalloprotease YP_001960775.1 KEGG: bte:BTH_II0778 hypothetical protein YP_001960776.1 KEGG: ana:alr2190 alpha-amylase YP_001960778.1 KEGG: kpn:KPN_04038 acetyltransferase YP_001960780.1 KEGG: pvi:Cvib_1097 hypothetical protein YP_001960781.1 PFAM: Methyltransferase type 11; KEGG: pvi:Cvib_1055 methyltransferase type 12 YP_001960782.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppd:Ppro_0731 cupin 2, conserved barrel domain protein YP_001960783.1 KEGG: pca:Pcar_0530 methylase YP_001960784.1 KEGG: hch:HCH_07011 hypothetical protein YP_001960785.1 KEGG: ana:alr0722 unknown protein YP_001960786.1 PFAM: transposase IS4 family protein; KEGG: plt:Plut_0436 transposase-like YP_001960787.1 KEGG: sco:SCO5639 hypothetical protein YP_001960788.1 KEGG: ppd:Ppro_3610 hypothetical protein YP_001960789.1 KEGG: she:Shewmr4_3032 hypothetical protein YP_001960790.1 PFAM: Integrase catalytic region; KEGG: pvi:Cvib_1308 integrase, catalytic region YP_001960791.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_1307 transposase IS3/IS911 family protein YP_001960792.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960794.1 KEGG: pvi:Cvib_0835 hypothetical protein YP_001960795.1 PFAM: helix-turn-helix domain protein; KEGG: bth:BT_4035 hypothetical protein YP_001960796.1 KEGG: bth:BT_4036 hypothetical protein YP_001960797.1 PFAM: type III restriction protein res subunit; KEGG: syp:SYNPCC7002_E0035 type III restriction-modification enzyme, R/helicase subunit YP_001960798.1 KEGG: hha:Hhal_0761 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001960800.1 KEGG: cte:CT1679 hypothetical protein YP_001960801.1 PFAM: cytochrome B561; KEGG: plt:Plut_1198 hydrogenase, b-type cytochrome subunit YP_001960802.1 KEGG: pvi:Cvib_0760 cytochrome c family protein YP_001960804.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_1689 sulfide-quinone reductase YP_001960805.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cte:CT0082 Holliday junction resolvase YP_001960806.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001960807.1 PFAM: Prephenate dehydrogenase; KEGG: pvi:Cvib_1692 prephenate dehydrogenase YP_001960808.1 PFAM: ATP-NAD/AcoX kinase; KEGG: plt:Plut_2050 NAD(+) kinase YP_001960809.1 KEGG: cte:CT0086 hypothetical protein YP_001960810.1 KEGG: amr:AM1_6172 transposase, IS5 family YP_001960811.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_20371 hypothetical protein YP_001960812.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cch:Cag_1975 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001960813.1 PFAM: transposase IS4 family protein; KEGG: mes:Meso_4308 transposase, IS4 YP_001960814.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001960815.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: plt:Plut_2054 ATPase YP_001960816.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT0090 glycosyl hydrolase, family 3 YP_001960817.1 PFAM: Phosphoglycerate mutase; KEGG: cte:CT0091 phosphohistidine phosphatase SixA YP_001960818.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001960819.1 PFAM: protein of unknown function DUF205; KEGG: cch:Cag_2025 protein of unknown function DUF205 YP_001960820.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001960821.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_001960822.1 PFAM: NLP/P60 protein; KEGG: cte:CT1145 NLP/P60 family protein YP_001960823.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001960824.1 PFAM: Ppx/GppA phosphatase; KEGG: pvi:Cvib_1704 Ppx/GppA phosphatase YP_001960825.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein YP_001960827.1 KEGG: cte:CT0100 hypothetical protein YP_001960828.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class-III; KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001960829.1 TIGRFAM: dethiobiotin synthase; KEGG: cte:CT0048 dethiobiotin synthase YP_001960830.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0049 biotin synthesis protein YP_001960831.1 PFAM: protein of unknown function DUF452; KEGG: pvi:Cvib_1709 protein of unknown function DUF452 YP_001960832.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: cte:CT0051 8-amino-7-oxononanoate synthase YP_001960833.1 KEGG: cte:CT0052 biotin synthetase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001960834.1 KEGG: cte:CT0053 BirA bifunctional protein; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein YP_001960835.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: gme:Gmet_0668 rubrerythrin YP_001960836.1 PFAM: ferredoxin-dependent glutamate synthase; Rubredoxin-type Fe(Cys)4 protein; KEGG: mbu:Mbur_0092 glutamate synthase (NADPH) GltB2 subunit YP_001960837.1 PFAM: cell wall hydrolase/autolysin; KEGG: cte:CT0054 N-acetylmuramoyl-L-alanine amidase YP_001960838.1 KEGG: cte:CT0055 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_001960839.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: plt:Plut_2074 ferrous iron transport protein B YP_001960840.1 PFAM: FeoA family protein; KEGG: pvi:Cvib_1716 FeoA family protein YP_001960841.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: rxy:Rxyl_0618 aconitate hydratase YP_001960842.1 PFAM: histidine triad (HIT) protein; KEGG: cte:CT0058 Hit family protein YP_001960844.1 KEGG: nar:Saro_2829 hypothetical protein YP_001960845.1 KEGG: nar:Saro_2830 hypothetical protein YP_001960846.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_001960847.1 PFAM: Alkaline phosphatase; KEGG: pvi:Cvib_1725 alkaline phosphatase YP_001960848.1 KEGG: pvi:Cvib_1726 alpha/beta hydrolase fold YP_001960849.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pvi:Cvib_1727 rare lipoprotein A YP_001960850.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: gfo:GFO_0122 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001960851.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001960852.1 KEGG: lch:Lcho_3187 tetratricopeptide TPR_2 repeat protein YP_001960853.1 PFAM: PGAP1 family protein; KEGG: nfa:nfa28820 hypothetical protein YP_001960854.1 PFAM: protein of unknown function DUF323; KEGG: cch:Cag_0037 hypothetical protein YP_001960856.1 KEGG: chy:CHY_0293 PIN domain protein YP_001960857.1 PFAM: protein of unknown function DUF955; KEGG: chy:CHY_0294 hypothetical protein YP_001960859.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine YP_001960860.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001960861.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0014 hydrolase, haloacid dehalogenase-like family YP_001960862.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001960863.1 TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: cte:CT0016 nicotinate-nucleotide adenyltransferase YP_001960864.1 PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cte:CT0017 lipoprotein YP_001960865.1 KEGG: abo:ABO_1656 hypothetical protein YP_001960866.1 KEGG: pvi:Cvib_0912 hypothetical protein YP_001960867.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: cch:Cag_1194 plasmid maintenance system antidote protein, XRE family YP_001960868.1 PFAM: plasmid maintenance system killer; KEGG: cyt:cce_1127 killer suppression protein HigA YP_001960870.1 KEGG: rrs:RoseRS_3563 ATPase (AAA+ superfamily)-like protein YP_001960871.1 PFAM: protein of unknown function DUF1156; KEGG: noc:Noc_0655 protein of unknown function DUF1156 YP_001960872.1 PFAM: protein of unknown function DUF1016; KEGG: psp:PSPPH_0603 hypothetical protein YP_001960873.1 PFAM: helicase domain protein; KEGG: sat:SYN_00017 superfamily II DNA/RNA helicase, SNF2 family YP_001960874.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001960875.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001960876.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: plt:Plut_2097 ATP synthase F0, C subunit YP_001960877.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_001960878.1 KEGG: plt:Plut_2099 hypothetical protein YP_001960879.1 KEGG: cch:Cag_0062 hypothetical protein YP_001960880.1 KEGG: pvi:Cvib_0736 protein of unknown function DUF583 YP_001960881.1 KEGG: plt:Plut_1857 hypothetical protein YP_001960883.1 PFAM: Peptidase M23; KEGG: bfs:BF3493 peptidase YP_001960884.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_0472 UDP-galactose 4-epimerase YP_001960885.1 PFAM: protein of unknown function DUF152; KEGG: cte:CT0026 conserved hypothetical protein YP_001960886.1 KEGG: cte:CT0027 hypothetical protein YP_001960887.1 TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: plt:Plut_2103 CrtF-related protein YP_001960888.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: cte:CT0029 4-hydroxybutyrate coenzyme A transferase YP_001960889.1 KEGG: sru:SRU_0485 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001960890.1 KEGG: sru:SRU_0486 succinate dehydrogenase, membrane subunit YP_001960891.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sru:SRU_0487 succinate dehydrogenase membrane subunit YP_001960892.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001960893.1 PFAM: cell division protein FtsA; KEGG: cte:CT0031 cell division protein FtsA YP_001960894.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cte:CT0032 FtsQ protein YP_001960895.1 KEGG: pth:PTH_1859 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_001960896.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001960897.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001960898.1 PFAM: cell cycle protein; KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family YP_001960899.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pvi:Cvib_1755 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_001960900.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001960901.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_001960902.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0039 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001960903.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cte:CT0040 penicillin-binding protein 3 YP_001960904.1 KEGG: cte:CT0041 hypothetical protein YP_001960905.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cch:Cag_0047 methyltransferase YP_001960906.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001960907.1 KEGG: plt:Plut_2120 hypothetical protein YP_001960908.1 PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase YP_001960909.1 PFAM: aminodeoxychorismate lyase; KEGG: plt:Plut_2122 aminodeoxychorismate lyase YP_001960910.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001960911.1 PFAM: Rhomboid family protein; KEGG: pvi:Cvib_1767 rhomboid family protein YP_001960912.1 PFAM: protein of unknown function DUF1232; KEGG: cte:CT2220 hypothetical protein YP_001960913.1 KEGG: bac:BamMC406_4383 hypothetical protein YP_001960914.1 PFAM: SMC domain protein; KEGG: pvi:Cvib_1131 SMC domain protein YP_001960915.1 KEGG: mla:Mlab_0855 GTP-binding signal recognition particle SRP54, G-domain YP_001960916.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: pvi:Cvib_1133 exodeoxyribonuclease I subunit D YP_001960917.1 PFAM: protein of unknown function DUF45; KEGG: pla:Plav_2343 protein of unknown function DUF45 YP_001960918.1 KEGG: mca:MCA1893 type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_001960919.1 KEGG: ppd:Ppro_1273 hypothetical protein YP_001960920.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dvu:DVU2042 Fic family protein YP_001960921.1 KEGG: nwi:Nwi_3122 hypothetical protein YP_001960922.1 KEGG: ftn:FTN_0708 hypothetical protein YP_001960923.1 PFAM: restriction modification system DNA specificity domain; KEGG: bld:BLi04316 hypothetical protein YP_001960924.1 KEGG: neu:NE2498 hypothetical protein YP_001960925.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: RNA methylase; N-6 DNA methylase; KEGG: mca:MCA1888 type I restriction-modification system, M subunit YP_001960926.1 KEGG: dvu:DVU2021 hypothetical protein YP_001960927.1 KEGG: mca:MCA1886 hypothetical protein YP_001960930.1 KEGG: cte:CT0814 hypothetical protein YP_001960931.1 PFAM: cyclase/dehydrase; KEGG: rha:RHA1_ro06717 hypothetical protein YP_001960932.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001960933.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cte:CT0009 RNA methyltransferase, TrmA family YP_001960934.1 PFAM: ROK family protein; KEGG: cte:CT0008 Rok family protein YP_001960935.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cte:CT0007 PAP2 superfamily protein YP_001960936.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: plt:Plut_2129 Oxa1/60 kDa IMP family protein YP_001960937.1 PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37 YP_001960938.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001960939.1 in Escherichia coli transcription of this gene is enhanced by polyamines