-- dump date 20140619_030907 -- class Genbank::CDS -- table cds_note -- id note YP_665736.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: bja:blr2789 cytochrome c-type biogenesis protein YP_665737.1 PFAM: cell wall hydrolase, SleB; KEGG: mlo:mlr7408 hypothetical protein YP_665738.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mlo:mll4454 nickel-cobalt-cadmium resistance protein NCCN YP_665739.1 PFAM: protein of unknown function DUF204; KEGG: eca:ECA2389 hypothetical protein YP_665740.1 KEGG: tdn:Tmden_1368 hypothetical protein YP_665741.1 PFAM: DSBA oxidoreductase; KEGG: bja:bll4294 outer membrane protein YP_665742.1 TIGRFAM: Twin-arginine translocation pathway signal pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: bme:BMEII0965 pseudoazurin YP_665743.1 KEGG: gka:GK0582 potassium transporter (trk family) YP_665744.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: rpb:RPB_4362 ErfK/YbiS/YcfS/YnhG YP_665745.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mlo:mll3467 similar to cell binding factor 2 precursor YP_665746.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr7525 hypothetical protein YP_665747.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: atc:AGR_C_1542 hypothetical protein YP_665748.1 PFAM: protein of unknown function DUF949; KEGG: atc:AGR_L_2977 hypothetical protein YP_665749.1 PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: sme:SMc00998 conserved hypothetical signal peptide protein YP_665751.1 PFAM: regulatory protein, MerR; KEGG: sme:SMc00109 putative transcription regulator protein YP_665752.1 TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: atc:AGR_C_3186 manganese transport protein XF1015 YP_665754.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: vpa:VPA0486 hypothetical protein YP_665755.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: ppr:PBPRA2178 hypothetical DNA-binding response regulator OmpR YP_665756.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mag:amb3346 signal transduction histidine kinase YP_665757.1 TIGRFAM: cation diffusion facilitator family transporter HflK protein; PFAM: band 7 protein cation efflux protein; KEGG: dde:Dde_2946 HflK protein YP_665758.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: bha:BH3154 protease specific for phage lambda cII repressor YP_665759.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: noc:Noc_2588 HflK-like protein YP_665760.1 KEGG: gme:Gmet_3548 PpiC-type peptidyl-prolyl cis-trans isomerase YP_665761.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: ret:RHE_CH03719 probable heavy metal-transporting ATPase protein YP_665762.1 PFAM: protein of unknown function DUF461; KEGG: mlo:mll3326 hypothetical protein YP_665763.1 PFAM: electron transport protein SCO1/SenC; KEGG: nwi:Nwi_0144 electron transport protein SCO1/SenC YP_665764.1 PFAM: Disulphide bond formation protein DsbB; KEGG: cps:CPS_2701 disulfide bond formation protein, DsbB family YP_665765.1 PFAM: DSBA oxidoreductase; KEGG: cps:CPS_2700 DsbA-like thioredoxin domain protein YP_665766.1 PFAM: protein of unknown function DUF1624; KEGG: bms:BR1178 hypothetical protein YP_665768.1 KEGG: bja:bll0066 hypothetical protein YP_665769.1 PFAM: Domain of unknown function DUF1738; KEGG: mlo:mll9305 replication primases YP_665770.1 KEGG: mca:MCA1926 ChrB domain protein YP_665771.1 KEGG: mlo:mlr2295 probable transporter YP_665773.1 KEGG: nfa:pnf1890 hypothetical protein YP_665774.1 KEGG: sco:SCO4349 hypothetical protein YP_665775.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: nfa:pnf1910 hypothetical protein YP_665776.1 KEGG: bja:bll0066 hypothetical protein YP_665777.1 SMART: ParB-like nuclease; KEGG: rpa:RPA2251 putative plasmid stabilization protein YP_665778.1 KEGG: ret:RHE_PA00144 hypothetical protein YP_665780.1 KEGG: mlo:mll9335 hypothetical protein YP_665781.1 KEGG: ddi:DDB0202950 hypothetical protein YP_665782.1 KEGG: nwi:Nwi_2125 hypothetical protein YP_665785.1 PFAM: protein of unknown function DUF1173; KEGG: sme:SMa0907 hypothetical protein YP_665786.1 KEGG: nar:Saro_0377 putative methylase/helicase YP_665787.1 KEGG: sme:SMa0911 hypothetical protein YP_665788.1 KEGG: sme:SMa0914 hypothetical protein YP_665789.1 KEGG: lin:pli0013 hypothetical protein YP_665790.1 PFAM: protein of unknown function DUF736; KEGG: sme:SMa0922 hypothetical protein YP_665792.1 PFAM: WGR; KEGG: mlo:msr9765 hypothetical protein YP_665795.1 KEGG: sme:SMc01579 hypothetical protein YP_665797.1 KEGG: mlo:mll9292 hypothetical protein YP_665798.1 KEGG: atc:AGR_pTi_103 hypothetical protein YP_665799.1 KEGG: atc:AGR_pTi_104 hypothetical protein YP_665800.1 PFAM: TRAG protein; KEGG: mlo:mlr9261 component of type IV secretion system YP_665801.1 PFAM: type II secretion system protein E; KEGG: mlo:mlr9260 component of type IV secretion system YP_665802.1 PFAM: conjugation TrbI-like protein; KEGG: mlo:mlr9259 conjugal transfer protein YP_665803.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mlo:mlr9258 conjugal transfer protein, trbG YP_665804.1 PFAM: VirB8; KEGG: mlo:mlr9256 conjugal transfer protein YP_665805.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mlr9255 conjugal transfer protein YP_665806.1 KEGG: mlo:mlr9253 conjugal transfer protein YP_665807.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bld:BLi01251 YjbJ YP_665808.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system; KEGG: mlo:mlr9251 conjugal transfer protein YP_665809.1 PFAM: type IV secretory pathway, VirB3-like; KEGG: ccr:CC2418 type IV secretion system protein B3, putative YP_665810.1 PFAM: VIRB2 type IV secretion; KEGG: mlo:mlr9249 conjugal transfer protein, trbC YP_665811.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mlo:mlr9248 lytic transglycosylase homolog YP_665813.1 KEGG: mlo:msl9404 similar to succinoglycan biosynthesis protein exoI YP_665814.1 PFAM: nuclease (SNase-like); KEGG: rpa:RPA2332 rare lipoprotein A:Staphylococcus nuclease (SNase-like) YP_665815.1 KEGG: nha:Nham_4449 hypothetical protein YP_665817.1 PFAM: response regulator receiver; KEGG: rso:RSc2312 probable two-component response regulator transcription regulator protein YP_665818.1 TIGRFAM: methyltransferase FkbM family; KEGG: atc:AGR_L_2665 hypothetical protein YP_665819.1 KEGG: csa:Csal_2668 hypothetical protein YP_665820.1 PFAM: ATP-binding region, ATPase-like; KEGG: pfl:PFL_3537 sensory box histidine kinase/response regulator YP_665821.1 PFAM: regulatory protein, MerR Cobyrinic acid a,c-diamide synthase; KEGG: ret:RHE_PB00163 plasmid partitioning protein RepAb YP_665822.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease RepB plasmid partition; KEGG: ret:RHE_PB00164 plasmid partitioning protein RepBb YP_665823.1 PFAM: replication protein C; KEGG: atc:AGR_pTi_95 replication protein C YP_665824.1 KEGG: mlo:mll9355 hypothetical protein YP_665825.1 PFAM: phage integrase; KEGG: mlo:mll9356 putative integrase YP_665826.1 PFAM: protein of unknown function DUF1403; KEGG: mlo:mlr9360 hypothetical protein YP_665827.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: mlo:mll9345 hypothetical protein YP_665828.1 PFAM: regulatory protein, ArsR; KEGG: sme:SMc02647 hypothetical transcription regulator protein YP_665829.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mlo:mlr3966 arsenate reductase YP_665830.1 PFAM: major intrinsic protein; KEGG: mlo:mll2168 hypothetical protein YP_665831.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: mlo:mll2167 arsenate reductase YP_665832.1 PFAM: regulatory protein, ArsR; KEGG: mlo:mll2166 hypothetical protein YP_665833.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_665834.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: jan:Jann_2398 cytochrome c biogenesis protein, transmembrane protein YP_665835.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_665836.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: mag:amb1012 cation transport ATPase YP_665837.1 KEGG: bcl:ABC3040 fatty acid alpha hydroxylase, cytochrome P450 YP_665838.1 KEGG: ilo:IL1242 Co/Zn/Cd efflux system component YP_665839.1 KEGG: pca:Pcar_1703 coenzyme F390 synthetase-like YP_665840.1 PFAM: regulatory protein, MerR; KEGG: rru:Rru_A1026 transcriptional regulator, MerR family YP_665842.1 KEGG: nwi:Nwi_3129 hypothetical protein YP_665843.1 KEGG: mlo:mlr6275 hypothetical protein YP_665844.1 PFAM: TniB; SMART: ATPase; KEGG: mlo:mlr6274 NTP-binding protein YP_665845.1 PFAM: Integrase, catalytic region; KEGG: mlo:mlr6273 transposase YP_665846.1 KEGG: nar:Saro_0377 putative methylase/helicase YP_665847.1 KEGG: sme:SMa0911 hypothetical protein YP_665848.1 KEGG: sme:SMa0914 hypothetical protein YP_665849.1 KEGG: rru:Rru_A0976 transcriptional modulator of MazE/toxin, MazF YP_665850.1 KEGG: rru:Rru_A0977 hypothetical protein YP_665851.1 PFAM: protein of unknown function DUF736; KEGG: sme:SMa0922 hypothetical protein YP_665852.1 PFAM: phage integrase phage integrase-like SAM-like; KEGG: nfa:pnf1910 hypothetical protein YP_665853.1 KEGG: sco:SCO4349 hypothetical protein YP_665854.1 PFAM: phage integrase; KEGG: sco:SCO4348 hypothetical protein YP_665857.1 PFAM: histone-like DNA-binding protein; KEGG: atc:AGR_pTi_222 DNA-binding protein HU YP_665859.1 KEGG: rru:Rru_A2948 hypothetical protein YP_665861.1 PFAM: helix-turn-helix motif YP_665864.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: sco:SCO1024 hypothetical protein YP_665865.1 VirD4 family YP_665867.1 PFAM: MobA/MobL protein; KEGG: mlo:mll5729 conjugal transfer protein traA YP_665869.1 KEGG: mlo:mlr0883 glycine cleavage system protein T YP_665870.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ret:RHE_CH01024 probable phosphoglycerate dehydrogenase protein YP_665871.1 PFAM: aminotransferase class-III; KEGG: rsp:RSP_0379 putative aminotransferase protein YP_665872.1 PFAM: peptidase S58, DmpA; KEGG: atc:AGR_pAT_343 hypothetical protein YP_665873.1 KEGG: mlo:mlr6965 ABC transporter, ATP-binding component; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase YP_665874.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA0325 spermidine/putrescine transport system permease protein YP_665875.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ava:Ava_5055 binding-protein-dependent transport systems inner membrane component YP_665876.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bba:Bd1418 spermidine/putrescine transport system substrate-binding protein YP_665877.1 KEGG: bja:blr3548 hypothetical protein YP_665878.1 KEGG: bbr:BB2694 large subunit of N,N-dimethylformamidase YP_665879.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: atc:AGR_pAT_716 hypothetical protein YP_665880.1 KEGG: atc:AGR_C_2699 glycine cleavage system protein P2 YP_665881.1 PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mag:amb3963 pyruvate/2-oxoglutarate dehydrogenase complex YP_665882.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain serine dehydratase beta chain; KEGG: jan:Jann_0316 L-serine dehydratase 1 YP_665883.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_665884.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ret:RHE_CH02242 glycine cleavage system H protein YP_665885.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: bja:blr5751 glycine cleavage system component T YP_665886.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region HI0933-like protein; KEGG: mag:amb3963 pyruvate/2-oxoglutarate dehydrogenase complex YP_665887.1 PFAM: glycine hydroxymethyltransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: vvy:VVA0693 serine hydroxymethyltransferase YP_665888.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: hch:HCH_03863 transcriptional regulator YP_665889.1 PFAM: protein of unknown function DUF323; KEGG: ret:RHE_PF00526 nitrate reductase protein YP_665890.1 TIGRFAM: Twin-arginine translocation pathway signal nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: rpa:RPA4145 dissimilatory nitrite reductase YP_665891.1 KEGG: atc:AGR_L_22 hypothetical protein YP_665892.1 PFAM: NnrS; KEGG: rpb:RPB_4037 NnrS YP_665893.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: sme:SMa1243 Azu1 pseudoazurin (blue copper protein) YP_665894.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: rpa:RPA4143 putative nitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family YP_665895.1 KEGG: rpa:RPA4144 hypothetical protein YP_665896.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: nwi:Nwi_2653 protein of unknown function UPF0074 YP_665897.1 KEGG: bme:BMEII0398 SEC-independent protein translocase protein TatC YP_665898.1 PFAM: protein of unknown function DUF59; KEGG: sme:SMa1255 hypothetical protein YP_665899.1 KEGG: sme:SMa1256 hypothetical protein YP_665900.1 KEGG: sme:SMa1259 hypothetical protein YP_665902.1 KEGG: bmb:BruAb2_0820 hypothetical membrane antigen YP_665903.1 KEGG: bmb:BruAb2_0819 hypothetical protein YP_665904.1 PFAM: iron permease FTR1; KEGG: bpe:BP1154 high-affinity iron transporter YP_665905.1 KEGG: bma:BMAA0884 hypothetical protein YP_665906.1 PFAM: NnrS; KEGG: bja:bll7083 putative uncharacterized protein involved in response to NO YP_665907.1 KEGG: sme:SMa1294 hypothetical protein YP_665908.1 KEGG: bte:BTH_I1791 hypothetical protein YP_665909.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: bja:blr3530 probable aromatic acid decarboxylase YP_665910.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rpb:RPB_4478 carboxylyase-related protein YP_665911.1 KEGG: rpb:RPB_4639 hypothetical protein YP_665912.1 KEGG: sme:SMa1289 hypothetical protein YP_665913.1 PFAM: peptidase U32; KEGG: bja:bll7627 probable protease YP_665914.1 PFAM: peptidase U32; KEGG: bja:bll7626 hypothetical protein YP_665915.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_665916.1 TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; KEGG: eba:ebA5678 isopentenyl-diphosphate delta-isomerase YP_665917.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding region; KEGG: gsu:GSU0402 hemerythrin family protein YP_665918.1 KEGG: mag:amb2226 hypothetical protein YP_665919.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding cytochrome b/b6-like; KEGG: mag:amb2225 cytochrome b subunit of the bc complex YP_665920.1 KEGG: mag:amb2224 uncharacterized protein SCO1/SenC/PrrC YP_665921.1 KEGG: mlo:mlr6275 hypothetical protein YP_665922.1 PFAM: TniB; SMART: ATPase; KEGG: mlo:mlr6274 NTP-binding protein YP_665923.1 PFAM: Integrase, catalytic region; KEGG: mlo:mlr6273 transposase YP_665924.1 KEGG: ade:Adeh_3196 bifunctional deaminase-reductase-like YP_665925.1 PFAM: transposase, IS4; KEGG: bja:bll1861 putative transposase YP_665926.1 KEGG: sme:SMa1323 hypothetical protein YP_665927.1 KEGG: mlo:msl9339 hypothetical protein YP_665928.1 KEGG: mlo:mll9338 hypothetical protein YP_665929.1 PFAM: protein of unknown function DUF1419; KEGG: atc:AGR_pTi_186 hypothetical protein YP_665930.1 KEGG: mlo:mll9334 hypothetical protein YP_665931.1 KEGG: atc:AGR_pTi_188 methyltransferase YP_665932.1 PFAM: transposase IS116/IS110/IS902; KEGG: ret:RHE_PA00138 putative insertion sequence transposase protein YP_665933.1 PFAM: helicase-like Methyltransferase type 11; SMART: DEAD/DEAH box helicase-like; KEGG: atc:AGR_pTi_188 methyltransferase YP_665934.1 ParB family YP_665935.1 KEGG: mlo:mll9311 hypothetical protein YP_665936.1 KEGG: mlo:mll9310 hypothetical protein YP_665937.1 KEGG: mlo:mll9309 hypothetical protein YP_665938.1 KEGG: mlo:mll9306 hypothetical protein YP_665939.1 PFAM: Domain of unknown function DUF1738; KEGG: atc:AGR_pAT_151 hypothetical protein YP_665940.1 KEGG: atc:AGR_pTi_207 hypothetical protein YP_665941.1 PFAM: Rv0623-like transcription factor; KEGG: sme:SMb20629 hypothetical protein YP_665942.1 PFAM: PilT protein-like; KEGG: mlo:mll9357 hypothetical protein YP_665943.1 PFAM: protein of unknown function DUF736; KEGG: mlo:mll9301 hypothetical protein YP_665944.1 KEGG: ret:RHE_PA00113 hypothetical protein YP_665945.1 PFAM: WGR; KEGG: atc:AGR_pAT_658 hypothetical protein YP_665946.1 PFAM: protein of unknown function DUF1173; KEGG: sme:SMa0907 hypothetical protein YP_665948.1 VirD4 family YP_665949.1 PFAM: Conjugal transfer TraD; KEGG: sme:SMa0930 probable TraD conjugal transfer protein YP_665950.1 KEGG: sme:SMa0933 probable TraC conjugal transfer protein YP_665951.1 PFAM: MobA/MobL protein; KEGG: sme:SMa0934 probable TraA1 conjugal transfer protein YP_665953.1 PFAM: Zeta toxin; KEGG: xac:XACb0057 hypothetical protein YP_665955.1 PFAM: type II secretion system protein E; KEGG: sme:SMa1302 VirB11 type IV secretion protein YP_665956.1 PFAM: conjugation TrbI-like protein; KEGG: sme:SMa1303 VirB10 transmembrane type IV secretion protein YP_665957.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: sme:SMa1306 VirB9 type IV secretion protein YP_665958.1 PFAM: VirB8; KEGG: atc:AGR_pAT_228 virB8 type IV secretion protein YP_665959.1 KEGG: atc:AGR_pAT_227 putative type IV secretion system protein VirB7 YP_665960.1 PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: sme:SMa1311 VirB6 type IV secretion protein YP_665961.1 KEGG: xcb:XC_2620 conserved plasmid protein YP_665962.1 PFAM: type IV secretion system; KEGG: atc:AGR_pAT_224 conjugal transfer protein YP_665963.1 TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system; KEGG: sme:SMa1315 VirB4 type IV secretion protein YP_665964.1 PFAM: type IV secretory pathway, VirB3-like; KEGG: atc:AGR_pAT_222 virB3 type IV secretion protein YP_665965.1 PFAM: VIRB2 type IV secretion; KEGG: sme:SMa1319 VirB2 type IV secretion protein YP_665966.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sme:SMa1321 virB1 type IV secretion protein YP_665967.1 KEGG: sme:SMa1322 hypothetical protein YP_665968.1 KEGG: sme:SMa1323 hypothetical protein YP_665969.1 PFAM: replication protein C; KEGG: ret:RHE_PA00035 plasmid replication protein RepCa2 YP_665970.1 PFAM: nuclease (SNase-like); KEGG: bqu:BQ10520 hypothetical protein YP_665971.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: atu:Atu3924 replication protein A YP_665972.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease RepB plasmid partition; KEGG: atc:AGR_L_1845 probable replication protein B YP_665973.1 PFAM: replication protein C; KEGG: atc:AGR_pTi_95 replication protein C YP_665974.1 PFAM: Resolvase-like; KEGG: atc:AGR_pTi_97 DNA invertase YP_665975.1 PFAM: phage integrase; KEGG: mlo:mll9356 putative integrase YP_665976.1 KEGG: ret:RHE_PA00133 hypothetical protein YP_665977.1 KEGG: mlo:mll6362 transposase YP_665978.1 KEGG: bmb:BruAb2_0669 hypothetical IS66 family element, orf4 YP_665979.1 PFAM: regulatory protein GntR, HTH; KEGG: rru:Rru_A1143 regulatory protein GntR YP_665980.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:bll7189 hypothetical protein YP_665981.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein YP_665982.1 PFAM: Endoribonuclease L-PSP; KEGG: psp:PSPPH_3321 endoribonuclease L-PSP family protein YP_665983.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: cps:CPS_4888 putative threonine dehydratase, catabolic YP_665984.1 PFAM: alanine racemase-like; KEGG: sil:SPOA0146 threonine aldolase, low-specificity YP_665985.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: jan:Jann_2605 ornithine cyclodeaminase YP_665986.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:blr7198 transcriptional regulatory protein YP_665987.1 PFAM: extracellular solute-binding protein, family 3; KEGG: bja:bll7600 ABC transporter amino-acid-binding protein YP_665988.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7599 amino acid ABC transporter permease protein YP_665989.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll7598 amino acid ABC transporter permease protein YP_665990.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:bll7597 amino acid ABC transporter ATP-binding protein YP_665991.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rso:RSc2588 probable transcription regulator protein YP_665992.1 PFAM: Integrase, catalytic region; KEGG: sme:SMc03248 putative transposase protein YP_665993.1 PFAM: transposase IS3/IS911; KEGG: atc:AGR_L_548 hypothetical protein YP_665994.1 PFAM: transposase Tn3; KEGG: atc:AGR_pAT_506 hypothetical protein YP_665995.1 PFAM: Resolvase-like Resolvase helix-turn-helix region; KEGG: gox:GOX2680 transposon gamma-delta resolvase YP_665996.1 KEGG: ret:RHE_PB00156 hypothetical protein YP_665997.1 KEGG: mlo:mlr6275 hypothetical protein YP_665998.1 PFAM: TniB; SMART: ATPase; KEGG: mlo:mlr6274 NTP-binding protein YP_665999.1 PFAM: Integrase, catalytic region; KEGG: mlo:mlr6273 transposase YP_666000.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: nwi:Nwi_3130 secretion protein HlyD YP_666001.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_3131 heavy metal efflux pump CzcA YP_666003.1 PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: sil:SPO1361 multicopper oxidase domain protein YP_666004.1 PFAM: protein of unknown function DUF411; KEGG: ret:RHE_PE00238 hypothetical protein YP_666006.1 KEGG: mlo:mll9366 hypothetical protein YP_666007.1 PFAM: TniB; KEGG: nfa:pnf1180 putative ATP-binding protein YP_666008.1 PFAM: Integrase, catalytic region; KEGG: mlo:mll9368 transposase YP_666009.1 KEGG: mlo:mlr9369 hypothetical protein YP_666010.1 PFAM: protein of unknown function DUF1612; KEGG: mlo:mlr9369 hypothetical protein YP_666011.1 KEGG: sme:SMa1924 hypothetical protein YP_666012.1 KEGG: rru:Rru_A0402 hypothetical protein YP_666013.1 KEGG: nar:Saro_0346 hypothetical protein YP_666014.1 KEGG: mlo:mll6134 hypothetical protein YP_666015.1 KEGG: mlo:mll6136 hypothetical protein YP_666016.1 KEGG: mlo:mll6137 hypothetical protein YP_666017.1 KEGG: mlo:msl6138 transcriptional regulator YP_666018.1 PFAM: DNA polymerase, beta-like region; KEGG: fra:Francci3_0126 hypothetical protein YP_666019.1 KEGG: fra:Francci3_0125 hypothetical protein YP_666020.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: fra:Francci3_0124 AAA ATPase YP_666021.1 KEGG: rsp:RSP_2045 hypothetical protein YP_666022.1 PFAM: helicase-like type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: rpa:RPA2214 possible helicase YP_666023.1 KEGG: bja:bll8091 hypothetical protein YP_666024.1 KEGG: bja:bll1917 hypothetical protein YP_666027.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: eli:ELI_04470 putative lipoprotein signal peptidase YP_666028.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: sme:SMc01200 hypothetical protein YP_666030.1 PFAM: protein of unknown function DUF1612; KEGG: ret:RHE_PE00001 hypothetical protein YP_666033.1 PFAM: cytochrome c, class II; KEGG: sil:SPO2694 cytochrome c' YP_666034.1 KEGG: nfa:pnf1610 putative metal cation transporter YP_666035.1 PFAM: multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: nfa:pnf1600 putative copper oxidase YP_666036.1 Transcriptional regulator that represses the manganese transporter MntH when manganese is present YP_666037.1 PFAM: cation efflux protein; KEGG: eli:ELI_04420 Co/Zn/Cd efflux system component YP_666039.1 PFAM: regulatory protein, MerR; KEGG: atc:AGR_C_1620 hypothetical protein YP_666040.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sil:SPO0522 glutamate/glutamine/aspartate/asparagine ABC transporter, ATP-binding protein YP_666041.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4446 putative amino acid ABC transporter permease protein YP_666042.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4447 putative amino acid ABC transporter permease protein YP_666043.1 SMART: extracellular solute-binding protein, family 3; KEGG: rru:Rru_A1004 lysine-arginine-ornithine-binding periplasmic protein YP_666044.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: mlo:mll9139 cystathionine beta-lyase YP_666045.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pst:PSPTO0212 transcriptional activator LysR YP_666046.1 KEGG: nfa:pnf1610 putative metal cation transporter YP_666047.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: nar:Saro_2145 heavy metal translocating P-type ATPase YP_666048.1 PFAM: ferric-uptake regulator; KEGG: sme:SMc02510 probable ferric uptake regulation protein YP_666049.1 PFAM: UspA; KEGG: nwi:Nwi_1035 universal stress protein, UspA YP_666050.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: rru:Rru_A2967 peptidase A8, signal peptidase II YP_666051.1 PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll4550 hypothetical protein YP_666052.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpa:RPA0444 putative apolipoprotein N-acyltransferase YP_666054.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: tte:TTE0539 phosphoglycerate dehydrogenase and related dehydrogenase YP_666055.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMb20108 putative ABC transporter periplasmic oligopeptide-binding protein YP_666056.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1437 probable ABC transporter permease YP_666057.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1435 probable ABC transporter permease YP_666058.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bce:BC1182 oligopeptide transport ATP-binding protein oppD YP_666059.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sme:SMb20141 putative oligopeptide ABC transporter ATP-binding protein YP_666060.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rba:RB10004 phosphoglycerate dehydrogenase SerA2-putative NAD-dependent 2-hydroxyacid dehydrogenase YP_666061.1 PFAM: glycoside hydrolase family 2, immunoglobulin-like beta-sandwich glycoside hydrolase family 2, sugar binding; KEGG: xac:XAC3075 beta-mannosidase YP_666062.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll5719 succinate-semialdehyde dehydrogenase YP_666063.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: mlo:mll5720 alcohol dehydrogenase YP_666064.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: sme:SMa0265 putative malate dehydrogenase YP_666065.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PF00381 putative mandelate racemase protein YP_666066.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: sth:STH1145 ABC transporter ATP-binding protein YP_666067.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sth:STH1146 ABC transporter substrate-binding protein YP_666068.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB homolog YP_666069.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: hma:rrnAC3032 mandelate racemase/muconate lactonizing enzyme family protein YP_666070.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: sme:SMb20680 putative hydroxypyruvate isomerase protein YP_666071.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mlo:mlr0254 probable oxidoreductase YP_666072.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr5721 transcriptional regulator YP_666073.1 KEGG: mlo:mlr6301 transposase YP_666074.1 KEGG: sme:SMb20114 hypothetical protein YP_666075.1 PFAM: dihydrodipicolinate synthetase; KEGG: ret:RHE_PF00238 dihydrodipicolinate synthase protein YP_666076.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_666077.1 KEGG: oih:OB2838 putative tricarboxylic transport membrane protein YP_666079.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:blr0382 transcriptional regulatory protein YP_666080.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:blr0382 transcriptional regulatory protein YP_666081.1 KEGG: mlo:mll6430 transposase YP_666083.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll2948 acyl-CoA synthase YP_666084.1 PFAM: amidohydrolase 2; KEGG: mka:MK0426 hypothetical protein YP_666085.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: eba:ebA1321 enoyl-CoA hydratase YP_666086.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: sil:SPOA0288 acyl-CoA dehydrogenase YP_666087.1 PFAM: regulatory protein, MarR; KEGG: pha:PSHAb0339 putative bacterial regulatory protein, MarR family YP_666088.1 KEGG: reu:Reut_B4697 hypothetical protein YP_666089.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ttj:TTHA0694 branched-chain amino acid ABC transporter, ATP-binding protein YP_666090.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG YP_666091.1 PFAM: inner-membrane translocator; KEGG: gka:GK3024 branched amino acid ABC transporter (permease) YP_666092.1 PFAM: inner-membrane translocator; KEGG: gsu:GSU3394 branched-chain amino acid ABC transporter, permease protein YP_666093.1 PFAM: Extracellular ligand-binding receptor; KEGG: sth:STH2361 branched chain amino acid ABC transporter substrate-binding protein YP_666094.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: tma:TM0309 putative oligopeptide transport system substrate-binding protein YP_666095.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: rba:RB6199 dehydrogenase homolog YP_666096.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_PB00152 putative glyoxalase protein YP_666097.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00233 probable oligopeptide ABC transporter, permease protein YP_666098.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0059 putative oligopeptide transport system permease protein YP_666099.1 KEGG: tma:TM1064 putative oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_666100.1 KEGG: tma:TM0057 putative oligopeptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_666101.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: atc:AGR_L_1782 hypothetical protein YP_666102.1 PFAM: oxidoreductase-like; KEGG: atc:AGR_L_1780 hypothetical protein YP_666103.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: atc:AGR_L_1780 hypothetical protein YP_666104.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_666105.1 KEGG: ret:RHE_PB00156 hypothetical protein YP_666106.1 PFAM: PfkB; KEGG: sil:SPO2420 2-dehydro-3-deoxygluconokinase YP_666107.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_666108.1 PFAM: Mannitol dehydrogenase-like Mannitol dehydrogenase rossman-like; KEGG: rsp:RSP_0480 D-mannonate oxidoreductase YP_666109.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_666110.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMa0065 putative GntR-family transcriptional regulator YP_666111.1 KEGG: bpe:BP2512 hypothetical protein YP_666112.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: reu:Reut_C6426 iron-containing alcohol dehydrogenase YP_666113.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: rru:Rru_A3412 amidohydrolase YP_666114.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rso:RSc2510 putative signal peptide protein YP_666117.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2984 hypothetical protein YP_666118.1 KEGG: mlo:mlr6301 transposase YP_666120.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: sme:SMc02474 putative ATP-binding ABC transporter protein YP_666121.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_2831 dimethylmenaquinone methyltransferase YP_666122.1 PFAM: protein of unknown function DUF336; KEGG: sco:SCO2848 hypothetical protein YP_666123.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: ssp:SSP0419 putative short chain dehydrogenase YP_666124.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ttj:TTHA0354 ABC transporter, permease protein, MalFG family YP_666125.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr2327 permease protein of sugar ABC transporter YP_666126.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: atc:AGR_pAT_7 hypothetical protein YP_666127.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_CH02059 probable transcriptional regulator protein, GntR family YP_666128.1 PFAM: Mannonate dehydratase; KEGG: ret:RHE_CH02058 mannonate dehydratase protein YP_666129.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMb21595 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_666130.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sco:SCO3475 putative galactonate dehydratase protein YP_666131.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_3440 putative short chain dehydrogenase YP_666132.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ppu:PP4316 2-hydroxyacid dehydrogenase YP_666133.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: sme:SMc04882 probable transcription regulator protein YP_666134.1 PFAM: extracellular solute-binding protein, family 3; KEGG: bbr:BB3307 probable solute-binding protein YP_666135.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB3308 amino acids ABC transporter, permease protein YP_666136.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB3309 amino acids ABC transporter, permease protein YP_666137.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pst:PSPTO2913 glutamine ABC transporter, ATP-binding protein YP_666138.1 KEGG: reu:Reut_C6350 hypothetical protein YP_666139.1 PFAM: regulatory proteins, IclR; KEGG: sme:SMb20682 putative acetate operon repressor IclR protein YP_666140.1 KEGG: msu:MS2154 hypothetical protein YP_666141.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sme:SMa1351 hypothetical protein YP_666142.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sco:SCO5923 ABC-transporter ATP-binding protein YP_666143.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO5924 probable integral membrane protein YP_666144.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bur:Bcep18194_B1767 ABC Fe3+ siderophore transporter, periplasmic ligand binding protein YP_666145.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: eca:ECA2965 putative mandelate racemase / muconate lactonizing enzyme YP_666146.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: rpb:RPB_3626 tartrate dehydrogenase YP_666147.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: rsp:RSP_3384 mandelate racemase/muconate lactonizing enzyme family protein YP_666148.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: stm:STM0764 transcriptional regulator YP_666149.1 KEGG: rpa:RPA2269 putative flavoprotein involved in K+ transport YP_666150.1 PFAM: regulatory protein, MerR Cobyrinic acid a,c-diamide synthase; KEGG: ret:RHE_PC00232 plasmid partitioning protein RepAc YP_666151.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease RepB plasmid partition; KEGG: sme:SMb20045 probable replication protein B YP_666152.1 PFAM: replication protein C; KEGG: mlo:mll9351 replication protein C YP_666153.1 KEGG: sil:SPOA0142 hypothetical protein YP_666154.1 KEGG: sil:SPOA0141 hypothetical protein YP_666155.1 PFAM: phage integrase; KEGG: mlo:mll9356 putative integrase YP_666156.1 PFAM: protein of unknown function DUF1403; KEGG: mlo:mlr9360 hypothetical protein YP_666157.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: mlo:mlr9362 hypothetical protein YP_666158.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sme:SMc00392 hypothetical protein YP_666159.1 PFAM: PilT protein-like; KEGG: sme:SMc00393 hypothetical/unknown protein YP_666160.1 PFAM: transposase Tn3; KEGG: atc:AGR_pAT_506 hypothetical protein YP_666161.1 PFAM: Resolvase-like Resolvase helix-turn-helix region; KEGG: gox:GOX2680 transposon gamma-delta resolvase YP_666162.1 KEGG: mlo:mlr6301 transposase YP_666163.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: rpb:RPB_3198 carbon-monoxide dehydrogenase YP_666164.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bbr:BB2451 probable GntR-family transcriptional regulator YP_666165.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_666166.1 PFAM: helicase-like; KEGG: sma:SAV2928 DNA repair helicase YP_666167.1 KEGG: ava:Ava_2201 hypothetical protein YP_666169.1 PFAM: protein of unknown function DUF262; KEGG: ana:alr5156 hypothetical protein YP_666170.1 PFAM: protein of unknown function DUF1524 RloF; KEGG: ana:alr5159 unknown protein YP_666171.1 PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfe:RF_0845 cysteine desulfurase IscS YP_666172.1 KEGG: sma:SAV2929 hypothetical protein YP_666173.1 PFAM: SMC protein-like; KEGG: hch:HCH_07044 ATPase involved in DNA repair YP_666174.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: hch:HCH_07043 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme YP_666175.1 KEGG: hch:HCH_07042 hypothetical protein YP_666176.1 PFAM: chromosome segregation and condensation protein ScpB; KEGG: mlo:mll9345 hypothetical protein YP_666177.1 PFAM: protein of unknown function DUF1403; KEGG: mlo:mlr9360 hypothetical protein YP_666179.1 KEGG: plu:plu3890 hypothetical protein YP_666180.1 KEGG: plu:plu3889 hypothetical protein YP_666181.1 PFAM: phage integrase; KEGG: mlo:mll9356 integrase YP_666182.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: bja:bsl2435 hypothetical protein YP_666183.1 PFAM: PilT protein-like; KEGG: bja:bll2434 plasmid stability protein YP_666185.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ret:RHE_PF00214 plasmid partitioning protein RepAf2 YP_666186.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease RepB plasmid partition; KEGG: ret:RHE_PF00213 plasmid partitioning protein RepBf2 YP_666187.1 PFAM: replication protein C; KEGG: mlo:mll9351 replication protein C YP_666188.1 KEGG: mlo:mll6995 hypothetical protein YP_666189.1 KEGG: mlo:msr9401 hypothetical protein YP_666190.1 PFAM: Domain of unknown function DUF1738; KEGG: mlo:mll9305 replication primases YP_666192.1 KEGG: atc:AGR_pTi_207 hypothetical protein YP_666193.1 KEGG: atc:AGR_pTi_207 hypothetical protein YP_666196.1 KEGG: rpa:RPA2251 plasmid stabilization protein YP_666197.1 KEGG: ret:RHE_PA00144 hypothetical protein YP_666201.1 KEGG: atc:AGR_pTi_186 hypothetical protein YP_666202.1 PFAM: Antirestriction protein; KEGG: sme:SMa0900 possible anti-restriction protein YP_666203.1 KEGG: nar:Saro_0377 methylase/helicase YP_666204.1 KEGG: mlo:mlr6275 hypothetical protein YP_666205.1 PFAM: TniB; SMART: ATPase; KEGG: mlo:mlr6274 NTP-binding protein YP_666206.1 PFAM: Integrase, catalytic region; KEGG: mlo:mlr6273 transposase YP_666207.1 PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_3510 hypothetical protein YP_666208.1 PFAM: protein of unknown function DUF861, cupin_3; KEGG: bbr:BB1179 hypothetical protein YP_666209.1 PFAM: aldehyde dehydrogenase; KEGG: sil:SPOA0377 aldehyde dehydrogenase family protein YP_666210.1 PFAM: Hydantoinase/oxoprolinase; KEGG: ape:APE1328 N-methylhydantoinase A YP_666211.1 PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: chy:CHY_0677 transcriptional regulator, MerR family YP_666212.1 KEGG: gvi:glr4337 hypothetical protein YP_666213.1 KEGG: gvi:glr4338 hypothetical protein YP_672571.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_672572.1 binds the polymerase to DNA and acts as a sliding clamp YP_672573.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_672574.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_672575.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: mlo:mlr4760 pentose(ribulose)-5-phosphate-3-epimerase YP_672576.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: mlo:mll5403 hypothetical protein YP_672577.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_672578.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_672579.1 DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_672580.1 PFAM: GcrA cell cycle regulator; KEGG: mlo:mll5645 hypothetical protein YP_672581.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU; KEGG: bmb:BruAb1_2117 PhoU, phosphate transport system regulatory protein PhoU YP_672582.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr5642 phosphate regulon, two-component sensor histidine kinase, phoR YP_672583.1 PFAM: protein of unknown function DUF344; KEGG: mlo:mll5641 hypothetical protein YP_672584.1 KEGG: bmb:BruAb1_0322 glycosyl transferase, group 2 family protein YP_672585.1 PFAM: extracellular solute-binding protein, family 3; KEGG: mlo:mll5636 ABC transporter, periplasmic amino acid-binding protein YP_672586.1 KEGG: bmb:BruAb2_0443 hypothetical protein YP_672587.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_672588.1 PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr5631 repressor protein CI YP_672589.1 PFAM: DSBA oxidoreductase; KEGG: reu:Reut_A2829 DsbA oxidoreductase YP_672590.1 KEGG: mlo:mlr5630 hypothetical protein YP_672591.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5629 enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase YP_672592.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_672593.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: mlo:mlr5624 probable acyl-CoA dehydrogenase YP_672594.1 PFAM: regulatory protein, MerR; KEGG: mlo:mlr5623 transcriptional regulator YP_672595.1 PFAM: Peptidoglycan-binding domain 1 Sel1-like repeat; KEGG: mlo:mll5622 hypothetical protein YP_672596.1 PFAM: protein of unknown function DUF81; KEGG: mlo:mll5620 hypothetical protein YP_672597.1 TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll5621 hypothetical protein YP_672598.1 PFAM: metallophosphoesterase; KEGG: mlo:mlr5611 hypothetical protein YP_672599.1 PFAM: helicase-like DEAD/DEAH box helicase-like DEAD/H associated; KEGG: mlo:mlr5610 probable ATP dependent DNA helicase YP_672600.1 PFAM: Tetratricopeptide TPR_2 Methyltransferase type 11 Methyltransferase type 12; SMART: Tetratricopeptide region; KEGG: mlo:mlr5485 hypothetical protein YP_672601.1 KEGG: mlo:mll5484 putative mRNA 3-end processing factor YP_672602.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_672603.1 KEGG: mlo:mlr5480 hypothetical protein YP_672604.1 PFAM: protein of unknown function DUF1611; KEGG: jan:Jann_0366 protein of unknown function DUF1611 YP_672605.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mlr7600 ABC transporter, ATP-binding protein YP_672606.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1479 ABC oligopeptide transporter, inner membrane subunit OppC YP_672607.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1480 ABC oligopeptide transporter, inner membrane subunit OppB YP_672608.1 PFAM: extracellular solute-binding protein, family 5; KEGG: rsp:RSP_1481 ABC oligopeptide transporter, perplasmic substrate-binding protein OppA YP_672609.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV2984 putative arginine/ornithine transport protein, ATP-binding protein YP_672610.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa2197 putative ABC transporter, permease YP_672611.1 PFAM: extracellular solute-binding protein, family 3; KEGG: cgb:cg1504 ABC-type amino acid transport system, secreted component YP_672612.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: eca:ECA0822 putative carbon-nitrogen hydrolase YP_672613.1 KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase YP_672614.1 PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: sma:SAV7000 putative GntR-family transcriptional regulator YP_672616.1 KEGG: jan:Jann_3574 hypothetical protein YP_672617.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat YP_672618.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat YP_672619.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_3770 TRAP C4-dicarboxylate transport system permease DctM subunit YP_672620.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0661 TRAP dicarboxylate transporter-DctP subunit YP_672621.1 activator of 3-phenylpropionic acid catabolism YP_672622.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bur:Bcep18194_B1886 monooxygenase, FAD-binding YP_672623.1 TIGRFAM: gentisate 1,2-dioxygenase; PFAM: Cupin 2, conserved barrel; KEGG: pae:PA2470 gentisate 1,2-dioxygenase YP_672624.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bte:BTH_II1389 fumarylacetoacetate hydrolase family protein YP_672625.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: bbr:BB3255 putative glutathione-S-transferase YP_672626.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: mlo:mlr6099 fumarate hydratase, class I YP_672627.1 outer membrane protease; involved in virulence in many organisms; OmpT; IcsP; SopA; Pla; PgtE; omptin; in Escherichia coli OmpT can degrade antimicrobial peptides; in Yersinia Pla activates plasminogen during infection; in Shigella flexneria SopA cleaves the autotransporter IcsA YP_672628.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mll1129 carbon-monoxide dehydrogenase small subunit YP_672629.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mll1128 carbon-monoxide dehydrogenase large subunit YP_672630.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMc03103 putative carbon monoxide dehydrogenase medium subunit transmembrane protein YP_672631.1 KEGG: reu:Reut_A1850 hypothetical protein YP_672632.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: mlo:mlr0338 probable integral membrane sugar transporter YP_672633.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sme:SMc00790 probable dipeptide transport ATP-binding ABC transporter protein YP_672634.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mlr5419 ABC transporter ATP-binding component YP_672635.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein YP_672636.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00787 probable dipeptide transport system permease protein YP_672637.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc00786 probable periplasmic dipeptide-binding protein YP_672638.1 PFAM: protein of unknown function DUF924; KEGG: bms:BR1186 hypothetical protein YP_672639.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll5415 long-chain-fatty-acid-CoA-ligase YP_672640.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_672641.1 PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: mlo:mll5410 transcriptional regulator YP_672642.1 protein associated with Co2+ and Mg2+ efflux YP_672643.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sme:SMc02134 hypothetical protein YP_672644.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein YP_672645.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7564 putative oligopeptide ABC transporter integral membrane protein YP_672646.1 KEGG: sil:SPO2552 peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: binding-protein-dependent transport systems inner membrane component ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_672647.1 KEGG: dra:DR1567 peptide transport system ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_672648.1 PFAM: Creatininase; KEGG: nph:NP0414A hypothetical protein YP_672649.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rsp:RSP_3399 carbon-nitrogen hydrolase family protein YP_672650.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: jan:Jann_2571 transcriptional regulator, LysR family YP_672651.1 PFAM: glycosyl transferase, family 2; KEGG: bha:BH3658 hypothetical protein YP_672654.1 PFAM: acyltransferase 3; KEGG: mlo:mll5285 hypothetical protein YP_672655.1 PFAM: Peptidoglycan-binding domain 1; KEGG: ctc:CTC00595 gamma-D-glutamyl-L-diamino acid endopeptidase I YP_672657.1 KEGG: jan:Jann_1113 integrins alpha chain YP_672658.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_672659.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ret:RHE_CH00567 large-conductance mechanosensitive channel transmembrane protein YP_672660.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; KEGG: mlo:mll5691 two-component sensor histidine kinase YP_672661.1 PFAM: regulatory protein, LuxR response regulator receiver Sigma-70, region 4 type 2; KEGG: mlo:mlr5684 two-component system, response regulator YP_672662.1 KEGG: bmb:BruAb1_0339 hypothetical protein YP_672663.1 PFAM: protein of unknown function DUF952; KEGG: mlo:mll5682 hypothetical protein YP_672664.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_672665.1 KEGG: bms:BR0308 hypothetical protein YP_672666.1 KEGG: bms:BRA0423 outer membrane protein, 31 kDa YP_672667.1 Catalyzes the deamination of dCTP to form dUTP YP_672668.1 catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis YP_672669.1 KEGG: bcl:ABC3268 hypothetical protein YP_672671.1 PFAM: Forkhead-associated YP_672674.1 TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF; KEGG: bja:blr1813 nodulation prrotein nolT YP_672677.1 KEGG: dvu:DVUA0119 type III secretion system ATPase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region H+-transporting two-sector ATPase, alpha/beta subunit-like; SMART: ATPase YP_672679.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: cvi:CV2625 surface presentation of antigens; secretory proteins YP_672680.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response YP_672681.1 PFAM: export protein FliQ, family 3; KEGG: dvu:DVUA0103 type III secretion protein, HrpO family YP_672682.1 TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: dvu:DVUA0102 type III secretion inner membrane protein YP_672683.1 PFAM: type III secretion exporter; KEGG: yps:pYV0074 putative type III secretion protein YP_672684.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: bpm:BURPS1710b_2048 putative membrane protein YP_672687.1 KEGG: bpm:BURPS1710b_2040 RhcC2 YP_672688.1 PFAM: NolW-like; KEGG: bte:BTH_II0777 type II/III secretion system protein YP_672689.1 PFAM: type III secretion FHIPEP; KEGG: yps:pYV0060 putative membrane-bound Yop protein YP_672692.1 KEGG: rso:RS05322 putative transmembrane protein YP_672695.1 PFAM: regulatory protein, LysR; KEGG: tbd:Tbd_2651 transcriptional regulator YP_672696.1 PFAM: FAD dependent oxidoreductase; KEGG: bme:BMEII0391 sarcosine oxidase beta subunit YP_672697.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: mlo:mlr4139 peptidyl-dipeptidase YP_672698.1 PFAM: regulatory protein, TetR; KEGG: rru:Rru_A1794 transcriptional regulator, TetR family YP_672699.1 PFAM: secretion protein HlyD; KEGG: ret:RHE_CH03250 probable protein secretion protein, HlyD family YP_672700.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb21206 putative ABC transporter ATP-binding protein, consisting of 2 fused ATP-binding domains YP_672701.1 PFAM: ABC-2 type transporter; KEGG: sme:SMb21205 putative ABC transporter permease protein YP_672702.1 PFAM: ABC-2 type transporter; KEGG: sme:SMb21204 putative ABC transporter permease protein YP_672703.1 PFAM: periplasmic binding protein; KEGG: jan:Jann_2122 periplasmic binding protein YP_672704.1 PFAM: transport system permease protein; KEGG: jan:Jann_2123 transport system permease protein YP_672705.1 PFAM: transport system permease protein; KEGG: jan:Jann_2124 transport system permease protein YP_672706.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bsu:BG14034 putative iron(III) dicitrate transport system ATP-binding protein YP_672707.1 TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain Haemagluttinin; KEGG: bur:Bcep18194_B0758 outer membrane autotransporter barrel YP_672708.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: sme:SMb20655 hypothetical protein YP_672709.1 PFAM: protein of unknown function DUF201; KEGG: mlo:mll1183 hypothetical protein YP_672710.1 PFAM: polysaccharide deacetylase; KEGG: atc:AGR_L_1972 hypothetical protein YP_672711.1 PFAM: Na+/Pi-cotransporter; KEGG: mlo:mlr2470 hypothetical protein YP_672712.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ret:RHE_CH03255 myo-inositol 2-dehydrogenase protein YP_672713.1 PFAM: protein of unknown function DUF1037; KEGG: sme:SMb20329 probable ThuA protein, function YP_672714.1 PFAM: cytochrome B561; KEGG: atc:AGR_C_2735 hypothetical protein YP_672715.1 KEGG: atc:AGR_C_2736 hypothetical protein YP_672716.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: atc:AGR_C_2739 ECF sigma factor YP_672717.1 PFAM: Secreted repeat of unknown function; KEGG: atc:AGR_C_2741 hypothetical protein YP_672718.1 PFAM: YceI; KEGG: sme:SMc01021 hypothetical protein YP_672719.1 KEGG: bja:blr2987 hypothetical protein YP_672720.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; PFAM: purine phosphorylase, family 2; KEGG: bsu:BG11330 purine-nucleoside phosphorylase YP_672721.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_672722.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_672723.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: ret:RHE_CH02716 chromate transporter protein YP_672726.1 KEGG: sme:SMa0773 NoeA host specific nodulation protein YP_672727.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate YP_672728.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: mlo:mll6514 6-phosphogluconolactonase YP_672729.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_672730.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll6520 oxidoreductase YP_672731.1 PFAM: glutamine synthetase, catalytic region; KEGG: bms:BRA0768 glutamine synthetase family protein YP_672732.1 KEGG: mlo:mll6524 two-component system, regulatory protein YP_672733.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mlo:mlr6533 ABC transporter, polyamine transport protein, periplasmic protein YP_672734.1 KEGG: mlo:mlr6534 ABC transporter, polyamine transport protein, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase YP_672735.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bme:BMEI0413 putrescine transport system permease protein PotH YP_672736.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6537 ABC transporter, polyamine transport protein, permease protein YP_672737.1 PFAM: AsmA; KEGG: mlo:mll6538 AsmA protein, assembly of outermembrane proteins YP_672738.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_672739.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein YP_672740.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc00784 putative iron binding protein YP_672741.1 KEGG: mlo:mll6540 two component histidine protein kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS YP_672742.1 TIGRFAM: phasin; KEGG: mlo:mlr6541 hypothetical protein YP_672743.1 KEGG: bja:bll5694 hypothetical protein YP_672744.1 PFAM: protein of unknown function DUF849; KEGG: sme:SMb20275 hypothetical protein YP_672745.1 PFAM: sugar isomerase (SIS); KEGG: sme:SMb20276 putative transcriptional regulator protein YP_672746.1 PFAM: aminotransferase class-III; KEGG: sme:SMb20277 hypothetical protein YP_672747.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: sil:SPO2187 TRAP transporter solute receptor, TAXI family YP_672748.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sil:SPO2186 TRAP transporter, 4TM/12TM fusion protein YP_672749.1 PFAM: UspA; KEGG: rsp:RSP_3802 hypothetical protein YP_672750.1 PFAM: HWE histidine kinase PAS fold-4; KEGG: rsp:RSP_2030 putative sensor histidine kinase YP_672751.1 PFAM: Stress responsive alpha-beta barrel; KEGG: zmo:ZMO0305 hypothetical protein YP_672752.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mlo:mll6896 exodeoxyribonuclease VII large subunit YP_672753.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll6897 transcriptional regulator YP_672754.1 PFAM: protein of unknown function DUF1127 YP_672755.1 PFAM: protein of unknown function DUF329; KEGG: bme:BMEI1673 zinc-binding protein YP_672756.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_672757.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_672758.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sme:SMc02309 putative arsenate reductase protein YP_672759.1 PFAM: Uncharacterised conserved protein UCP032146; KEGG: bmb:BruAb1_0279 hypothetical protein YP_672760.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_672761.1 KEGG: bmb:BruAb1_0281 hypothetical protein YP_672762.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_672763.1 KEGG: bmb:BruAb1_0283 hypothetical protein YP_672764.1 PFAM: phage integrase; KEGG: gox:GOX2318 prophage integrase YP_672769.1 KEGG: jan:Jann_2828 Sel1-like YP_672771.1 PFAM: HNH endonuclease YP_672774.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mlo:mll0743 single-strand DNA-binding protein YP_672775.1 KEGG: pfl:PFL_3787 hypothetical protein YP_672780.1 PFAM: peptidase S24, S26A and S26B; KEGG: nar:Saro_3015 putative prophage repressor YP_672793.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; KEGG: ngo:NGO0495 hypothetical protein, putative phage associated protein YP_672794.1 KEGG: mlo:mll0462 hypothetical protein YP_672796.1 KEGG: mlo:mll0459 hypothetical protein YP_672797.1 KEGG: mlo:mll0458 hypothetical protein YP_672798.1 KEGG: mlo:mll0457 hypothetical protein YP_672800.1 KEGG: mlo:mll0454 hypothetical protein YP_672801.1 KEGG: bbr:BB2205 hypothetical protein YP_672802.1 KEGG: mlo:mll0453 hypothetical protein YP_672803.1 KEGG: mlo:mll0452 hypothetical protein YP_672804.1 KEGG: rso:RSc3232 putative bacteriophage-related protein YP_672805.1 KEGG: ret:RHE_CH01102 hypothetical protein YP_672806.1 KEGG: ret:RHE_CH01103 hypothetical protein YP_672807.1 KEGG: mlo:mlr8538 hypothetical protein YP_672808.1 KEGG: bme:BMEI1691 hypothetical membrane spanning protein YP_672809.1 KEGG: cps:CPS_4424 hypothetical protein YP_672810.1 KEGG: ppu:PP1573 major tail protein, putative YP_672812.1 KEGG: hch:HCH_00681 hypothetical protein YP_672816.1 KEGG: bja:blr3130 serine protease DO-like precursor YP_672820.1 KEGG: mlo:mlr4570 hypothetical protein YP_672821.1 similar to YegS from E. coli YP_672822.1 PFAM: regulatory protein GntR, HTH aminotransferase, class I and II; KEGG: mlo:mlr1139 probable transcriptional regulator YP_672823.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pfl:PFL_2405 hypothetical protein YP_672824.1 PFAM: PrkA serine kinase PrkA AAA; KEGG: sme:SMc01267 serine protein kinase YP_672825.1 PFAM: protein of unknown function DUF444; KEGG: sme:SMc01266 hypothetical protein YP_672826.1 PFAM: SpoVR; KEGG: sme:SMc01265 hypothetical protein YP_672827.1 TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase Penicillin-binding-like; KEGG: sme:SMb21297 probable bifunctional penicillin-binding protein YP_672828.1 PFAM: alpha-2-macroglobulin-like N/apple PAN alpha-2-macroglobulin-like 2; KEGG: mlo:mlr1663 hypothetical protein YP_672829.1 TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll4054 2-deoxy-D-gluconate 3-dehydrogenase YP_672830.1 PFAM: oxidoreductase-like; KEGG: sme:SMb20013 hypothetical protein YP_672831.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20014 putative transcriptional regulator protein YP_672832.1 PFAM: inner-membrane translocator; KEGG: sme:SMb20015 putative sugar ABC transporter permease protein ABC transporter YP_672833.1 PFAM: inner-membrane translocator; KEGG: sme:SMb20016 putative sugar ABC transporter permease protein ABC transporter YP_672834.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20017 putative sugar ABC transporter ATP-binding protein ABC transporter YP_672835.1 KEGG: sme:SMb20018 putative sugar ABC transporter periplasmic sugar-binding protein ABC transporter YP_672836.1 KEGG: mlo:mlr2967 hypothetical protein YP_672837.1 KEGG: mlo:mlr2965 hypothetical protein YP_672838.1 KEGG: mlo:mlr2964 hypothetical protein YP_672839.1 KEGG: mlo:mlr2959 hypothetical protein YP_672840.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_672841.1 membrane protein involved in the flagellar export apparatus YP_672842.1 FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_672843.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_672844.1 post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_672845.1 acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_672846.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella YP_672847.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_672848.1 the hook connects flagellar basal body to the flagellar filament YP_672849.1 PFAM: transcriptional regulatory protein-like; KEGG: mlo:mlr2935 two-component response regulator YP_672850.1 PFAM: Lytic transglycosylase, catalytic; KEGG: sme:SMc03045 hypothetical protein YP_672851.1 PFAM: flagellar hook-length control protein; KEGG: mlo:mlr2933 similar to CHEMOTAXIS MOTD PROTEIN YP_672852.1 a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation YP_672853.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_672854.1 KEGG: mlo:mlr2930 hypothetical protein YP_672855.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_672856.1 PFAM: flagellin-like; KEGG: bmb:BruAb2_1084 flagellin family protein YP_672857.1 PFAM: flagellin-like; KEGG: bme:BMEII0150 flagellin YP_672858.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_672859.1 PFAM: flagellar basal body-associated protein FliL; KEGG: mlo:mlr2923 flagellar FliL protein YP_672860.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod YP_672861.1 KEGG: mlo:mlr2920 hypothetical protein YP_672862.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_672863.1 KEGG: mlo:mlr2917 flagellar protein FlgA YP_672864.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_672865.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_672866.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_672867.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella YP_672868.1 KEGG: mlo:mlr2910 hypothetical protein YP_672869.1 involved in type III protein export during flagellum assembly YP_672870.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella YP_672871.1 PFAM: protein of unknown function DUF1217; KEGG: sme:SMc03023 hypothetical protein YP_672872.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_672873.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2904 flagellar motor switch protein FliM YP_672874.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: mlo:mll2902 flagellar motor switch protein FliN YP_672875.1 One of three proteins involved in switching the direction of the flagellar rotation YP_672876.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_672877.1 KEGG: mlo:mll2898 hypothetical protein YP_672878.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: ret:RHE_CH03537 probable threonine dehydratase protein YP_672879.1 PFAM: helix-turn-helix motif protein of unknown function DUF955; KEGG: mlo:mlr6529 hypothetical protein YP_672880.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sme:SMc00768 isocitrate lyase YP_672881.1 KEGG: atc:AGR_C_1076 hypothetical protein YP_672882.1 PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_75 aldehyde dehydrogenase YP_672883.1 TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: atc:AGR_L_76 putative deoxyribose-phosphate aldolase YP_672884.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: sme:SMb20705 hypothetical protein YP_672885.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: mlo:mll1676 gluconokinase YP_672886.1 PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: mlo:mll2881 hypothetical protein YP_672887.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: mlo:mll9669 hypothetical protein YP_672888.1 blocks the formation of polar Z-ring septums YP_672889.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ret:RHE_PE00408 cell division inhibitor MinD protein YP_672890.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell YP_672891.1 PFAM: glutathione S-transferase-like; KEGG: ret:RHE_PB00095 probable glutathione S-transferase protein YP_672892.1 PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3 YP_672893.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: nwi:Nwi_3125 arsenate reductase YP_672894.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nwi:Nwi_3124 low molecular weight phosphotyrosine protein phosphatase YP_672895.1 SMART: regulatory protein, ArsR; KEGG: rpb:RPB_1970 transcriptional regulator, ArsR family, ArsR1 YP_672896.1 PFAM: luciferase-like; KEGG: mlo:mll2315 alkanal monooxygenase (bacterial liciferase alpha chain) like protein YP_672897.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_672899.1 PFAM: protein of unknown function DUF892; KEGG: sme:SMb20091 hypothetical protein YP_672900.1 KEGG: sil:SPO0259 membrane protein, putative YP_672901.1 PFAM: Asp/Glu racemase; KEGG: bur:Bcep18194_A5279 Asp/Glu racemase YP_672902.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bsu:BG12492 Allantoin permease YP_672903.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: atc:AGR_L_357 hypothetical protein YP_672904.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: bps:BPSL2120 putative transport-related membrane protein YP_672905.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: atc:AGR_C_4456 hypothetical protein YP_672906.1 PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB1600 putative signal transducer or MFS superfamily transporter YP_672907.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: sme:SMc01657 putative ferrichrome-iron receptor precursor protein YP_672908.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rru:Rru_A1846 twin-arginine translocation pathway signal YP_672909.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: bja:bll7016 two-component hybrid sensor and regulator YP_672910.1 PFAM: regulatory protein, LuxR response regulator receiver; KEGG: bja:blr7015 two-component response regulator YP_672912.1 PFAM: Amidase; KEGG: rsp:RSP_3369 Asp-tRNA Asn/Glu-tRNA Gln amidotransferase subunit A YP_672913.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3370 TRAP-T family transporter, DctM (12 TMs) subunit YP_672914.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rsp:RSP_3371 TRAP-T family transporter, small (4 TMs) inner membrane subunit YP_672915.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_3372 TRAP-T family transporter, periplasmic binding protein YP_672916.1 PFAM: FAD linked oxidase-like; KEGG: mbo:Mb1803 probable oxidoreductase YP_672917.1 KEGG: mlo:mll1853 hypothetical protein YP_672918.1 KEGG: dar:Daro_3698 hypothetical protein YP_672919.1 PFAM: GAF pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: reu:Reut_A0055 GAF:pyridoxamine 5'-phosphate oxidase-related, FMN-binding YP_672920.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region; KEGG: atc:AGR_C_680 hypothetical protein YP_672921.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A pyridine nucleotide-disulphide oxidoreductase dimerisation region FAD dependent oxidoreductase; KEGG: sme:SMc01717 putative mercuric reductase protein YP_672922.1 KEGG: sme:SMc01718 hypothetical protein YP_672923.1 PFAM: DoxX; KEGG: mlo:mll8170 hypothetical protein YP_672924.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_672925.1 PFAM: protein of unknown function DUF81; KEGG: sme:SMa2359 hypothetical protein YP_672926.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_672927.1 PFAM: chaperonin Cpn10; KEGG: sme:SMc00912 10 KD chaperonin A protein YP_672928.1 PFAM: methyladenine glycosylase; KEGG: mlo:mlr6925 DNA-3-methyladenine glycosylase I YP_672929.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: mlo:mll6923 hypothetical protein YP_672930.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region; KEGG: mlo:mlr6920 glycolate oxidase subunit, (Fe-S)protein YP_672931.1 KEGG: ade:Adeh_3030 hypothetical protein YP_672932.1 PFAM: FAD linked oxidase-like; KEGG: mlo:mlr6919 glycolate oxidase subunits GlcE YP_672933.1 PFAM: FAD linked oxidase-like; KEGG: mlo:mlr6916 glycolate oxidase subunit GlcD YP_672934.1 KEGG: mlo:mlr6914 hypothetical protein YP_672935.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mll6911 transcriptional regulator YP_672936.1 PFAM: protein of unknown function DUF224, cysteine-rich region; KEGG: eba:ebA3918 predicted Fe-S oxidoreductase YP_672937.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: rru:Rru_A3605 iron-sulfur cluster binding protein YP_672938.1 PFAM: protein of unknown function DUF162; KEGG: rru:Rru_A3603 protein of unknown function DUF162 YP_672939.1 PFAM: metallophosphoesterase; KEGG: mlo:mll6908 serine/threonine protein phosphatase YP_672940.1 KEGG: mlo:mll6904 hypothetical protein YP_672941.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_672942.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: mlo:mll6902 gamma-glutamylcysteine synthetase YP_672943.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_672944.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_672945.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_672946.1 PFAM: transferase hexapeptide repeat; KEGG: mlo:mlr4814 streptogramin A acetyl transferase YP_672947.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_672948.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: sme:SMc01724 hypothetical protein YP_672949.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_672950.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll4839 hypothetical protein YP_672951.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mlo:mlr4841 putative hydrolase, ripening-related protein-like YP_672953.1 PFAM: protein of unknown function DUF461 nuclear export factor GLE1; KEGG: sme:SMc01242 signal peptide protein YP_672955.1 PFAM: conserved hypothetical protein 730; KEGG: bmb:BruAb2_0967 conserved hypothetical protein TIGR00730, hypothetical YP_672956.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_672957.1 PFAM: protein of unknown function DUF805; KEGG: mlo:mlr4846 hypothetical protein YP_672958.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_672959.1 KEGG: mlo:mlr4851 contains weak similarity to transport protein (permease) YP_672960.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_672961.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4853 similar to acetyltransferase YP_672962.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_672963.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_672964.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein YP_672965.1 TIGRFAM: alanine racemase; PFAM: alanine racemase-like; KEGG: mlo:mll3997 alanine racemase YP_672966.1 PFAM: MlrC-like; KEGG: rpa:RPA1213 hypothetical protein YP_672967.1 PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: bja:blr3621 probable hydantoin utilization protein YP_672968.1 KEGG: gme:Gmet_0847 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_672969.1 KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_672970.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein YP_672971.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atu:Atu3036 ABC transporter, membrane spanning protein [dipeptide] YP_672972.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: atc:AGR_L_3525 putative hemin-binding lipoprotein YP_672973.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rsp:RSP_3400 transcriptional regulator, LysR family YP_672974.1 PFAM: Rhodanese-like; KEGG: rpa:RPA3613 putative thiosulfate sulfurtransferase YP_672975.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding protein of unknown function DUF224, cysteine-rich region FAD linked oxidase-like; KEGG: hch:HCH_01266 FAD/FMN-containing dehydrogenase YP_672976.1 PFAM: beta-lactamase; KEGG: bbr:BB4670 hypothetical protein YP_672977.1 PFAM: regulatory proteins, IclR; KEGG: mta:Moth_1780 transcriptional regulator, IclR family YP_672978.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: psp:PSPPH_2974 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_672979.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: ppu:PP2603 hypothetical protein YP_672980.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bja:bll6359 putative oxidoreductase protein YP_672981.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_A3878 alkylhydroperoxidase AhpD core YP_672982.1 PFAM: NIPSNAP domain containing protein; KEGG: bja:bll3657 hypothetical protein YP_672983.1 PFAM: protein of unknown function DUF1468; KEGG: reu:Reut_B3643 protein of unknown function DUF1468 YP_672984.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB2469 probable membrane protein YP_672985.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB0983 hypothetical protein YP_672987.1 PFAM: protein of unknown function DUF195; KEGG: bmb:BruAb2_0976 hypothetical protein YP_672988.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_672989.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_672990.1 KEGG: atu:Atu1660 hypothetical protein YP_672991.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_672992.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: bmb:BruAb2_0194 hydrolase, haloacid dehalogenase-like family YP_672993.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_672994.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_672995.1 KEGG: mlo:mlr8251 hypothetical protein YP_672996.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: sme:SMc00905 putative deaminase protein YP_672997.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: mlo:mlr8253 ribosomal large subunit pseudouridine synthase B YP_672998.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: mlo:mlr8254 hypothetical protein YP_672999.1 PFAM: peptidase M16-like; KEGG: mlo:mlr8255 protease YP_673000.1 PFAM: peptidase M16-like; KEGG: mlo:mlr8256 protease YP_673001.1 PFAM: Patatin; KEGG: mlo:mlr8257 hypothetical protein YP_673002.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N sodium/hydrogen exchanger; KEGG: bms:BRA0210 glutathione-regulated potassium-efflux system protein, putative YP_673003.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mlo:mlr8264 pmbA protein, maturation of antibiotic MccB17 YP_673004.1 PFAM: inositol monophosphatase; KEGG: bme:BMEII1032 myo-inositol-1(or 4)-monophosphatase YP_673005.1 KEGG: sme:SMc00895 hypothetical protein YP_673006.1 PFAM: protein of unknown function DUF374; KEGG: mlo:mlr8268 hypothetical protein YP_673007.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_673008.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; KEGG: mlo:mlr8270 tetraacyldisaccharide 4'-kinase YP_673009.1 KEGG: mlo:msl8272 hypothetical protein YP_673010.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_673011.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_673012.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_673013.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_673014.1 PFAM: protein of unknown function DUF442; KEGG: mlo:mll8311 hypothetical protein YP_673015.1 TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold Ndr; KEGG: sme:SMb20579 putative beta-ketoadipate enol-lactone hydrolase protein YP_673017.1 PFAM: aldo/keto reductase; KEGG: atu:Atu1524 hypothetical protein YP_673018.1 PFAM: AP endonuclease 2-like Xylose isomerase-like TIM barrel; KEGG: mlo:mll3362 hypothetical protein YP_673019.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll3361 hypothetical protein YP_673020.1 PFAM: Aldose 1-epimerase; KEGG: sil:SPO0857 aldose 1-epimerase YP_673021.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase-like amino acid-binding ACT; KEGG: sme:SMa2141 probable formyltetrahydrofolate deformylase YP_673023.1 KEGG: mlo:msl4978 hypothetical protein YP_673024.1 PFAM: Myo-inositol catabolism IolB region; KEGG: atc:AGR_L_719 putative myo-inositol catabolism protein YP_673025.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II Nucleotidyl transferase Cupin 2, conserved barrel; KEGG: bms:BRA0347 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_673026.1 KEGG: mlo:mlr0494 hypothetical protein YP_673027.1 PFAM: OsmC-like protein; KEGG: sme:SMb21303 hypothetical membrane-anchored protein YP_673028.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pac:PPA1277 ABC transporter, substrate binding protein YP_673029.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx19250 ABC transporter, permease protein YP_673030.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cdi:DIP1742 putative oligopeptide ABC transport system membrane protein YP_673031.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: lxx:Lxx19230 ABC transporter, ATP-binding protein YP_673032.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: lxx:Lxx19220 oligopeptide porter YP_673033.1 PFAM: Fmu (Sun); KEGG: mlo:mlr6944 SUN-family protein YP_673034.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll6938 transcriptional regulator YP_673035.1 TIGRFAM: MIP family channel proteins; PFAM: major intrinsic protein; KEGG: mlo:mll6943 aquaporin, nodulin-like intrinsic protein YP_673036.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_673037.1 KEGG: ava:Ava_2290 hypothetical protein YP_673038.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mll8348 multidrug efflux protein YP_673039.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: mlo:mlr8347 cell division protein ftsJ YP_673040.1 PFAM: Ppx/GppA phosphatase; KEGG: mlo:mlr8346 exopolyphosphatase YP_673041.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: pai:PAE1936 carbon monoxide dehydrogenase small subunit, conjectural YP_673042.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: ape:APE2219 292aa long hypothetical nicotine dehydrogenase chain A YP_673043.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mbo:Mb0380c probable carbon monoxyde dehydrogenase (large chain) YP_673044.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: smu:SMU.1665 putative branched chain amino acid ABC transporter, ATP-binding protein YP_673045.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: dps:DP2487 probable high-affinity branched-chain amino acid ABC transporter, ATP-binding protein YP_673046.1 PFAM: inner-membrane translocator; KEGG: dvu:DVU0549 high-affinity branched-chain amino acid ABC transporter, permease protein YP_673047.1 PFAM: inner-membrane translocator; KEGG: dar:Daro_0367 inner-membrane translocator YP_673048.1 PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB1151 putative branched-chain amino acid-binding protein YP_673049.1 PFAM: putative cyclase; KEGG: bur:Bcep18194_C7460 putative cyclase YP_673050.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: ana:alr4455 6-oxocamphor hydrolase YP_673051.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein-like FAD dependent oxidoreductase; KEGG: gme:Gmet_1533 fumarate reductase/succinate dehydrogenase flavoprotein-like YP_673052.1 PFAM: regulatory protein, TetR; KEGG: jan:Jann_2034 transcriptional regulator, TetR family YP_673053.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: mlo:mlr5265 UDP-glucose dehydrogenase YP_673054.1 PFAM: acyltransferase 3; KEGG: tfu:Tfu_1701 hypothetical protein YP_673055.1 KEGG: pca:Pcar_0625 hypothetical protein YP_673056.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ret:RHE_PE00044 probable UDP-glucose 6-dehydrogenase/GDP-mannose 6-dehydrogenase protein YP_673057.1 PFAM: glycosyl transferase, family 2; KEGG: bha:BH3658 hypothetical protein YP_673058.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: cjk:jk2037 ABC-type polysaccharide/polyol phosphate transport system ATPase component YP_673059.1 PFAM: ABC-2 type transporter; KEGG: cef:CE0178 putative O-antigen export system permease protein YP_673060.1 PFAM: glycosyl transferase, group 1; KEGG: pmi:PMT9312_1301 glycosyltransferase-like YP_673061.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily; KEGG: mlo:mlr6946 hypothetical protein YP_673062.1 Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_673063.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_673064.1 PFAM: phage integrase; KEGG: mlo:mlr6952 CP4-like integrase YP_673065.1 PFAM: Prophage CP4-57 regulatory; KEGG: nwi:Nwi_2141 prophage CP4-57 regulatory YP_673066.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family YP_673067.1 KEGG: mlo:msl9602 hypothetical protein YP_673068.1 PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI YP_673069.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein YP_673070.1 PFAM: Conjugal transfer protein; KEGG: mlo:mll9605 conjugal transfer protein trbF YP_673071.1 type IV secretion VirB6 family YP_673072.1 KEGG: nar:Saro_0313 hypothetical protein YP_673073.1 KEGG: mlo:mll9607 conjugal transfer protein trbJ YP_673074.1 type IV secretion system VirB4 family YP_673075.1 KEGG: mlo:mll9611 conjugal transfer protein trbB YP_673076.1 PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC YP_673077.1 PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB YP_673078.1 PFAM: helix-turn-helix motif; KEGG: nwi:Nwi_0830 transcriptional regulator, XRE family YP_673079.1 PFAM: HipA-like-like; KEGG: neu:NE1310 possible HipA protein YP_673080.1 KEGG: fnu:FN2100 hypothetical protein YP_673081.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: reu:Reut_C6418 AAA ATPase, central region YP_673082.1 KEGG: rru:Rru_A0811 helix-turn-helix protein, CopG YP_673083.1 type IV secretion VirD4 coupling protein family YP_673084.1 KEGG: rru:Rru_A0816 hypothetical protein YP_673085.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase YP_673086.1 PFAM: protein of unknown function DUF736; KEGG: bja:bll0046 hypothetical protein YP_673087.1 KEGG: bja:bll0047 conjugal transfer protein precursor YP_673088.1 KEGG: bja:bll0048 hypothetical protein YP_673089.1 KEGG: bja:bsl0049 hypothetical protein YP_673090.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bja:bll0050 putative partition protein YP_673091.1 KEGG: bja:bll0051 replication protein A YP_673092.1 PFAM: Prophage CP4-57 regulatory; KEGG: mlo:msr9739 hypothetical protein YP_673093.1 KEGG: mlo:mlr9734 hypothetical protein YP_673094.1 KEGG: mlo:msr9733 hypothetical protein YP_673095.1 KEGG: nwi:Nwi_0844 hypothetical protein YP_673096.1 KEGG: rru:Rru_A0163 transcriptional regulator, XRE family YP_673097.1 PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein YP_673098.1 KEGG: nwi:Nwi_2132 hypothetical protein YP_673099.1 KEGG: mlo:msr9708 hypothetical protein YP_673101.1 KEGG: nwi:Nwi_2130 hypothetical protein YP_673102.1 KEGG: bja:bll0064 hypothetical protein YP_673103.1 KEGG: mlo:mlr9704 probably methylase/helicase YP_673104.1 KEGG: ecc:c0271 hypothetical protein YP_673105.1 KEGG: nwi:Nwi_2126 hypothetical protein YP_673106.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: bja:blr1932 hypothetical protein YP_673107.1 PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC YP_673108.1 KEGG: ret:RHE_PF00561 hypothetical protein YP_673109.1 PFAM: SNF2-related helicase-like type III restriction enzyme, res subunit; SMART: DEAD/DEAH box helicase-like; KEGG: ecc:c5378 hypothetical protein YP_673110.1 KEGG: bbr:BB0909 hypothetical protein YP_673111.1 PFAM: DNA methylase N-4/N-6; KEGG: bbr:BB0912 type III restriction-modification system methyltransferase YP_673112.1 PFAM: type III restriction enzyme, res subunit; KEGG: bbr:BB0913 type III restriction enzyme YP_673113.1 KEGG: bja:bll4632 predicted ATP-dependent endonuclease of the OLD family YP_673114.1 PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase YP_673115.1 KEGG: nfa:pnf2190 hypothetical protein YP_673116.1 PFAM: Patatin; KEGG: reu:Reut_C6025 patatin YP_673117.1 KEGG: bja:blr0073 hypothetical protein YP_673118.1 KEGG: bja:blr0072 hypothetical protein YP_673119.1 PFAM: helix-turn-helix motif; KEGG: bja:bll1669 hypothetical protein YP_673120.1 PFAM: protein of unknown function DUF955; KEGG: bja:bll1668 hypothetical protein YP_673122.1 KEGG: mlo:mlr6952 CP4-like integrase YP_673124.1 KEGG: bmb:BruAb1_1333 DedA family protein YP_673125.1 PFAM: protein of unknown function DUF156; KEGG: psb:Psyr_2932 protein of unknown function DUF156 YP_673126.1 PFAM: high-affinity nickel-transporter; KEGG: ppu:PP2968 hypothetical protein YP_673127.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bja:bll1209 ABC transporter ATP-binding protein YP_673128.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB1882 putative integral membrane transport protein YP_673129.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpb:RPB_1650 binding-protein-dependent transport systems inner membrane component YP_673130.1 PFAM: extracellular solute-binding protein, family 5; KEGG: bpa:BPP2435 putative solute-binding transport protein (periplasmic) YP_673131.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mac:MA1318 argininosuccinate lyase YP_673132.1 PFAM: GCN5-related N-acetyltransferase YP_673133.1 PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C6645 aldehyde dehydrogenase YP_673134.1 PFAM: FAD dependent oxidoreductase; KEGG: sil:SPOA0380 hypothetical protein YP_673135.1 PFAM: GCN5-related N-acetyltransferase regulatory protein GntR, HTH GntR-like; KEGG: reu:Reut_B5875 regulatory protein GntR, HTH:GntR, C-terminal YP_673136.1 KEGG: bja:blr6348 hypothetical protein YP_673137.1 KEGG: gvi:glr4338 hypothetical protein YP_673138.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: jan:Jann_1319 hypothetical protein YP_673139.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: bur:Bcep18194_A5985 transcriptional regulator, AraC family YP_673140.1 PFAM: helix-turn-helix, AraC type; KEGG: sme:SMa2163 hypothetical protein YP_673141.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldo/keto reductase; KEGG: sme:SMa2157 probable oxidoreductase YP_673142.1 PFAM: protein of unknown function DUF323; KEGG: sme:SMa2159 hypothetical protein YP_673143.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: ppu:PP2383 transcriptional regulator, AraC family YP_673144.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: gvi:glr2986 LysR family transcriptional regulatory protein YP_673145.1 KEGG: gvi:gll2985 unknown protein YP_673146.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: reu:Reut_B4507 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead:aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_673147.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bja:blr2218 putative xanthine dehydrogenase YP_673148.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ferredoxin [2Fe-2S]-binding; KEGG: mlo:mlr1925 oxidoreductase, iron-sulphur binding subunit YP_673149.1 KEGG: bte:BTH_II1747 isoquinoline 1-oxidoreductase, beta subunit YP_673150.1 TIGRFAM: autotransporter-associated beta strand repeat protein; KEGG: bms:BRA1148 outer membrane autotransporter YP_673151.1 TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain Haemagluttinin; KEGG: bme:BMEII0148 extracellular serine protease YP_673152.1 PFAM: Invasion associated locus B; KEGG: mlo:mll2844 invasion-like protein YP_673153.1 PFAM: Invasion associated locus B; KEGG: mlo:mll2844 invasion-like protein YP_673154.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: sme:SMb20753 putative acyl-CoA dehydrogenase protein YP_673155.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: atc:AGR_L_1109 hypothetical protein YP_673156.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; KEGG: atc:AGR_L_1106 sarcosine oxidase beta subunit YP_673157.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; KEGG: atc:AGR_L_1105 sarcosine oxidase, subunit delta YP_673158.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase) FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: atc:AGR_L_1103 sarcosine oxidase alpha subunit YP_673159.1 PFAM: Sarcosine oxidase, gamma subunit; KEGG: atc:AGR_L_1101 sarcosine oxidase gamma subunit YP_673160.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL CHASE4; KEGG: sme:SMa0137 putative kinase/esterase YP_673161.1 PFAM: regulatory protein, LuxR response regulator receiver sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: sme:SMa1550 putative response regulator of two-component system YP_673162.1 PFAM: MCP methyltransferase, CheR-type Methyltransferase type 12; KEGG: sme:SMa1552 putative methyltransferase - chemotaxis YP_673163.1 PFAM: CheW-like protein; KEGG: sme:SMa1554 putative purine-binding chemotaxis protein CheW YP_673164.1 PFAM: histidine kinase, HAMP region chemotaxis sensory transducer; KEGG: sme:SMa1556 putative methyl-accepting chemotaxis protein YP_673165.1 PFAM: response regulator receiver CheW-like protein ATP-binding region, ATPase-like Hpt; KEGG: sme:SMa1558 putative histidine kinase, chemotaxis YP_673166.1 PFAM: CheB methylesterase response regulator receiver; KEGG: sme:SMa1561 probable CheB2 chemotaxis methylesterase YP_673167.1 PFAM: type II secretion system protein; KEGG: sme:SMa1562 hypothetical protein YP_673168.1 PFAM: type II secretion system protein; KEGG: sme:SMa1564 hypothetical protein YP_673169.1 PFAM: type II secretion system protein E; KEGG: sme:SMa1568 probable CpaF2 pilus assembly protein YP_673170.1 PFAM: Flp/Fap pilin component; KEGG: sme:SMa1570 probable PilA2 pilus assembly protein YP_673171.1 KEGG: sme:SMa1580 hypothetical protein YP_673172.1 PFAM: TadE-like; KEGG: sme:SMa1572 hypothetical protein YP_673173.1 PFAM: TadE-like; KEGG: sme:SMa1573 probable CpaE2 pilus assembly protein YP_673174.1 KEGG: sme:SMa1576 probable CpaB2 pilus assembly protein YP_673175.1 PFAM: peptidase A24A, prepilin type IV; KEGG: sme:SMa1578 prepilin peptidase CpaA YP_673176.1 KEGG: sme:SMa1579 hypothetical protein YP_673177.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: sme:SMa0166 hypothetical protein YP_673178.1 KEGG: sme:SMa0164 hypothetical protein YP_673179.1 PFAM: type II and III secretion system protein transport-associated; KEGG: sme:SMa0163 probable PilQ pilus assembly protein YP_673180.1 KEGG: sme:SMa0031 hypothetical protein YP_673181.1 PFAM: Hemolysin-type calcium-binding region peptidase M10A and M12B, matrixin and adamalysin peptidase, metallopeptidases; SMART: Peptidase, metallopeptidases; KEGG: sme:SMa0034 possible protease YP_673182.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: mlo:mll2582 metalloprotease transporter YP_673183.1 KEGG: nwi:Nwi_0962 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase YP_673184.1 KEGG: ccr:CC3094 sensory box/GGDEF family protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-4 PAS fold; SMART: PAS YP_673185.1 KEGG: sme:SMa0113 putative sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif YP_673186.1 PFAM: response regulator receiver; KEGG: ccr:CC3015 response regulator YP_673187.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family YP_673188.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bja:bll2645 hypothetical protein YP_673189.1 PFAM: homocysteine S-methyltransferase; KEGG: jan:Jann_3671 homocysteine S-methyltransferase YP_673190.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ppu:PP2743 acetyltransferase, GNAT family YP_673191.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: rpa:RPA0429 catalase/peroxidase YP_673192.1 KEGG: ret:RHE_CH02427 hypothetical protein YP_673193.1 KEGG: sme:SMb21005 hypothetical protein YP_673194.1 KEGG: sme:SMb21006 hypothetical membrane protein YP_673195.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: mlo:mll2253 hypothetical protein YP_673196.1 PFAM: regulatory protein, ArsR; KEGG: ret:RHE_CH02431 probable transcriptional regulator protein, ArsR family YP_673197.1 PFAM: FAD dependent oxidoreductase; KEGG: rpa:RPA3344 possible oxidoreductase YP_673198.1 KEGG: mag:amb4178 hydrolase of the alpha/beta superfamily YP_673199.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: mlo:mlr4960 penicillin-binding protein YP_673200.1 PFAM: glycoside hydrolase, family 25; KEGG: sme:SMb21091 putative cell-wall lytic enzyme, similar to muramidase (lysozyme, 3.2.1.17) protein YP_673201.1 TIGRFAM: conserved hypothetical protein; KEGG: sme:SMa0287 hypothetical protein YP_673202.1 TIGRFAM: putative integral membrane protein TIGR02587; KEGG: atc:AGR_L_1426 hypothetical protein YP_673203.1 KEGG: atc:AGR_C_1551 hypothetical protein YP_673204.1 KEGG: atc:AGR_C_1550 hypothetical protein YP_673205.1 PFAM: Uncharacterised conserved protein UCP028101; KEGG: bpe:BP1558 hypothetical protein YP_673206.1 KEGG: bbr:BB1723 hypothetical protein YP_673207.1 PFAM: protein of unknown function DUF1111; KEGG: bbr:BB1722 hypothetical protein YP_673208.1 KEGG: bbr:BB1721 putative iron-regulated protein YP_673209.1 PFAM: protein of unknown function DUF900, hydrolase-like; KEGG: mlo:mll0159 hypothetical protein YP_673210.1 PFAM: NUDIX hydrolase; KEGG: sme:SMb20988 hypothetical protein YP_673211.1 PFAM: glycosyl transferase, family 2 YP_673212.1 PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_2551 glycosyl transferase, family 2 YP_673213.1 PFAM: glycoside hydrolase, family 16; KEGG: mlo:mlr5264 endo-1,3-1,4-beta-glycanase ExoK YP_673214.1 PFAM: polysaccharide biosynthesis protein; KEGG: ret:RHE_PE00198 putative succinoglycan biosynthesis transport protein YP_673215.1 KEGG: ret:RHE_CH03215 ketal pyruvate transferase protein YP_673216.1 PFAM: O-antigen polymerase; KEGG: rsp:RSP_2549 putative polysaccharide polymerase YP_673217.1 PFAM: polysaccharide export protein; KEGG: mlo:mll5251 exopolysaccharide production protein exoF YP_673218.1 PFAM: sugar transferase; KEGG: mlo:mll5252 exopolysaccharide production protein exoY YP_673219.1 KEGG: mlo:mlr5253 exopolysaccharide production repressor exoX protein YP_673220.1 KEGG: mlo:mlr5262 hypothetical protein YP_673221.1 KEGG: mlo:mlr5271 glycosyltransferase, SUCCINOGLYCAN BIOSYNTHESIS PROTEIN EXOL YP_673222.1 PFAM: glycosyl transferase, family 2; KEGG: mlo:mlr5272 glycosyltransferase, SUCCINOGLYCAN BIOSYNTHESIS PROTEIN EXOA YP_673223.1 PFAM: glycosyl transferase, family 2; KEGG: mlo:mlr5273 glycosyltransferase, SUCCINOGLYCAN BIOSYNTHESIS PROTEIN EXOM YP_673224.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mlo:mlr5275 UTP-glucose-1-phosphate uridylyltransferase exoN YP_673225.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: mlo:mlr5276 exopolysaccharide polymerization protein, succinoglycan biosynthesis transport protein ExoP YP_673226.1 PFAM: metallophosphoesterase; KEGG: ret:RHE_CH03362 probable serine/threonine specific protein phosphatase protein YP_673227.1 TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase, middle region; KEGG: mlo:mlr5076 folylpolyglutamate synthase / dihydrofolate synthase YP_673228.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_673229.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_673230.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: xcv:XCV0568 periplasmic divalent cation tolerance protein YP_673231.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_673232.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_673233.1 PFAM: protein of unknown function DUF45; KEGG: mlo:mlr5068 hypothetical protein YP_673234.1 KEGG: ret:RHE_CH00018 hypothetical protein YP_673235.1 KEGG: mlo:mlr5063 hypothetical protein YP_673236.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_673237.1 KEGG: mlo:mll5060 nickel-cobalt-cadmium resistance protein NCCN YP_673238.1 PFAM: ribosomal protein L35; KEGG: bmb:BruAb1_2094 RpmI, ribosomal protein L35 YP_673239.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_673240.1 KEGG: bmb:BruAb1_2096 hypothetical protein YP_673241.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_673242.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_673243.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll5047 hypothetical protein YP_673244.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_673245.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_673246.1 SMART: Ribosomal RNA adenine methylase transferase; KEGG: mlo:mll4753 phospholipid N-methyltransferase YP_673247.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: mlo:mll4752 hypothetical protein YP_673248.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_673249.1 PFAM: protein of unknown function DUF1330; KEGG: ret:RHE_CH00313 hypothetical protein YP_673250.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase-like; KEGG: mlo:mll4552 intracellular PHB depolymerase YP_673251.1 PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll4550 hypothetical protein YP_673253.1 PFAM: Integral membrane protein TerC; KEGG: rpb:RPB_1430 integral membrane protein TerC YP_673254.1 KEGG: ret:RHE_CH03847 hypothetical protein YP_673255.1 KEGG: mlo:mll7402 hypothetical protein YP_673256.1 KEGG: mlo:mlr7403 hypothetical protein YP_673257.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_673258.1 PFAM: OsmC-like protein; KEGG: bja:blr0920 hypothetical protein YP_673259.1 PFAM: cell wall hydrolase, SleB; KEGG: mlo:mlr7408 hypothetical protein YP_673260.1 KEGG: mlo:mlr7410 FoF1 ATP synthase, subunit I YP_673261.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_673262.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_673263.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel. YP_673264.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_673266.1 PFAM: regulatory protein, TetR; KEGG: tfu:Tfu_1913 putative transcriptional regulator YP_673267.1 PFAM: NnrU; KEGG: sme:SMb20997 putative membrane protein, similar to periplasmic nitrate reductase NnuR YP_673268.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_673269.1 PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: bms:BR0387 hypothetical protein YP_673270.1 TIGRFAM: molybdenum cofactor synthesis domain molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: mlo:mll7421 molybdopterin biosynthesis, protein B YP_673271.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_673272.1 KEGG: mlo:msl7423 hypothetical protein YP_673273.1 PFAM: peptidase S49; KEGG: mlo:mll7424 probable proteinase YP_673274.1 PFAM: methyltransferase small; KEGG: bme:BMEI1534 methyltransferase YP_673275.1 KEGG: sme:SMc00859 hypothetical/unknown protein YP_673276.1 PFAM: Polyprenyl synthetase; KEGG: mlo:mlr7426 octaprenyl-diphosphate synthase YP_673277.1 PFAM: TPR repeat Peptidoglycan-binding LysM Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7432 hypothetical protein YP_673278.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_673279.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_673280.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 SUA5/yciO/yrdC-like; KEGG: mlo:mlr7439 putative translation factor YP_673281.1 PFAM: FAD linked oxidase-like; KEGG: mlo:mlr7440 putative oxidoreductase YP_673282.1 KEGG: mlo:mlr7441 hypothetical protein YP_673283.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin YP_673284.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_673285.1 PFAM: protein of unknown function DUF1326; KEGG: sme:SMc02860 hypothetical protein YP_673286.1 KEGG: sme:SMc02859 hypothetical protein YP_673287.1 KEGG: mlo:msl7451 hypothetical protein YP_673288.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: mlo:mlr7452 probable acyl-CoA dehydrogenase YP_673289.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_673290.1 KEGG: bmb:BruAb1_0440 hypothetical protein YP_673291.1 PFAM: heat shock protein DnaJ-like chaperone DnaJ-like; KEGG: mlo:mlr7456 heat shock protein DnaJ YP_673292.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_673293.1 PFAM: Phosphoglycerate mutase; KEGG: mlo:mlr7459 hypothetical protein YP_673294.1 KEGG: bmb:BruAb1_0449 hypothetical protein YP_673295.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_673296.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase GTP cyclohydrolase II; KEGG: mlo:mlr7463 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase) YP_673297.1 PFAM: histone deacetylase superfamily; KEGG: mlo:mlr7469 similar to histone deacetylase YP_673298.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_673299.1 PFAM: Pirin-like; KEGG: mlo:mlr7473 pirin-related protein YP_673300.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_673301.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ RNA-binding S4; KEGG: bmb:BruAb1_0459 TlyA, hemolysin A YP_673302.1 PFAM: deoxyribonuclease/rho motif-related TRAM (Uracil-5)-methyltransferase; KEGG: mlo:mlr7480 RNA methyltransferase YP_673303.1 KEGG: hch:HCH_02792 putative aminotransferase YP_673304.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mlo:mll7487 TldD protein, suppresses inhibitory activity of CsrA YP_673305.1 PFAM: Invasion associated locus B; KEGG: mlo:mll7488 hypothetical protein YP_673306.1 PFAM: cytochrome c oxidase, subunit II cytochrome C oxidase subunit II, transmembrane region; KEGG: mlo:mlr7490 cytochrome c oxidase subunit II YP_673307.1 PFAM: cytochrome c oxidase, subunit I; KEGG: bmb:BruAb1_0490 CoxA, cytochrome c oxidase, subunit I YP_673308.1 converts protoheme IX and farnesyl diphosphate to heme O YP_673309.1 KEGG: bms:BR0470 hypothetical protein YP_673310.1 involved in the insertion of copper into subunit I of cytochrome C oxidase YP_673311.1 PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr7496 cytochrome c oxidase subunit III YP_673312.1 PFAM: Surfeit locus 1; KEGG: bms:BR0474 SurF1 family protein YP_673313.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_673314.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine YP_673315.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_673316.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: mlo:mll7508 peroxiredoxin-like protein YP_673317.1 KEGG: mlo:mll7509 hypothetical protein YP_673318.1 PFAM: protein of unknown function DUF179; KEGG: mlo:mlr7511 putative transcriptional regulator YP_673319.1 PFAM: protein of unknown function DUF1232; KEGG: ret:RHE_CH01706 hypothetical protein YP_673320.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein YP_673321.1 PFAM: protein of unknown function DUF156; KEGG: sme:SMc04168 hypothetical protein YP_673322.1 KEGG: bms:BR0481 sensory box/GGDEF domain/EAL domain protein; TIGRFAM: PAS sensor protein diguanylate cyclase; PFAM: conserved hypothetical protein EAL Diverse 7TM receptor, extracellular region 2 Diverse 7TM receptor, transmembrane region PAS fold-3; SMART: PAC motif YP_673323.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll7514 ribosomal-protein-alanine N-acetyltransferase YP_673324.1 PFAM: peptidase M16-like; KEGG: mlo:mll7516 processing proteinase YP_673325.2 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_673326.1 KEGG: bmb:BruAb1_0508 lipoprotein, hypothetical YP_673327.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mlo:mll7519 hypothetical protein YP_673328.1 PFAM: DNA methylase N-4/N-6; KEGG: mlo:mlr7520 adenine DNA methyltransferase YP_673329.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: atc:AGR_C_1458 conserved hypothetical protein VC1645 YP_673330.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif HhH-GPD; KEGG: mlo:mll7523 adenine glycosylase YP_673331.1 PFAM: protein of unknown function DUF1159; KEGG: mlo:mlr7524 hypothetical protein YP_673332.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr7525 hypothetical protein YP_673333.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC protein-like SMCs flexible hinge; KEGG: mlo:mlr7527 chromosome segregation SMC protein YP_673334.1 KEGG: sme:SMc01535 hypothetical protein YP_673336.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll7529 hypothetical protein YP_673337.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_673338.1 KEGG: mlo:mll7536 hypothetical protein YP_673339.1 KEGG: mlo:mlr7539 hypothetical protein YP_673340.1 PFAM: beta-lactamase-like; KEGG: mlo:mll7547 hypothetical protein YP_673341.1 PFAM: BioY protein; KEGG: mlo:mlr7548 probable biotin synthase YP_673342.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: mlo:mlr5697 UDP-galactose 4-epimerase YP_673343.1 PFAM: sugar transferase; KEGG: mlo:mlr7570 glycosyltransferase YP_673344.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD Male sterility-like; KEGG: bms:BR0510 epimerase/dehydratase, putative YP_673345.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: rsp:RSP_4197 antisigma-factor antagonist, STAS YP_673346.1 PFAM: UspA; KEGG: syn:slr1230 hypothetical protein YP_673347.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase Xylose isomerase-like TIM barrel; KEGG: ret:RHE_PC00215 putative 4-hydroxyphenylpyruvate dioxygenase protein YP_673348.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: bja:bll6916 hypothetical protein YP_673349.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll5243 3-oxoacyl-(acyl carrier protein) reductase YP_673350.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: bja:blr3666 nucleoside-diphosphate-sugar epimerase YP_673351.1 KEGG: atc:AGR_L_563 hypothetical protein YP_673352.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bcl:ABC3355 C4-dicarboxylate transport system permease large protein YP_673353.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bcl:ABC4078 C4-dicarboxylate transport system permease small protein YP_673354.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMb21438 putative C4-dicarboxylate transport system, C4-dicarboxylate-binding protein precursor signal peptide YP_673355.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:blr7971 transcriptional regulatory protein YP_673356.1 PFAM: Hemolysin-type calcium-binding region Animal haem peroxidase; KEGG: ppu:PP2561 secreted hemolysin-type calcium-binding bacteriocin, putative YP_673357.1 KEGG: mlo:mll1027 rhizobiocin secretion protein rspD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase YP_673358.1 PFAM: Hemolysin-type calcium-binding region; KEGG: bja:bll7673 hypothetical protein YP_673359.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: sme:SMc04208 putative toxin secretion transmembrane protein YP_673360.1 PFAM: ATP-binding region, ATPase-like; KEGG: sme:SMb21519 putative two-component sensor histidine kinase protein YP_673361.1 PFAM: regulatory protein, LuxR Helix-turn-helix, type 11; KEGG: ttj:TTHA1352 response regulator YP_673362.1 PFAM: response regulator receiver; KEGG: ret:RHE_CH01734 probable two-component response regulator protein YP_673363.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bbr:BB0351 LysR family regulatory protein YP_673364.1 PFAM: polysaccharide deacetylase; KEGG: son:SO4151 polysaccharide deacetylase family protein YP_673365.1 PFAM: regulatory protein, LuxR; KEGG: bur:Bcep18194_B1172 transcriptional regulator, LuxR family YP_673366.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bur:Bcep18194_A5914 thiamine pyrophosphate-requiring enzyme (putative benzoylformatedecarboxylase) YP_673367.1 KEGG: bbr:BB3568 putative decarboxylase YP_673368.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bbr:BB3569 hypothetical protein YP_673369.1 PFAM: aldehyde dehydrogenase; KEGG: pfo:Pfl_3233 aldehyde dehydrogenase YP_673370.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B1956 hypothetical protein YP_673371.1 KEGG: mlo:mll6979 ABC transporter, periplasmic substrate-binding protein YP_673372.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH874 sulfate ABC transporter ATP-binding protein YP_673373.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02345 putative transport system permease ABC transporter protein YP_673374.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02345 putative transport system permease ABC transporter protein YP_673375.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein, MarR; KEGG: bja:blr2971 transcriptional regulatory protein YP_673376.1 PFAM: Siderophore-interacting protein FAD-binding 9, siderophore-interacting; KEGG: fra:Francci3_2810 FAD-binding 9, siderophore-interacting YP_673377.1 KEGG: bpa:BPP0387 4,5-dihydroxyphthalate decarboxylase YP_673378.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: reu:Reut_B3601 salicylate 1-monooxygenase YP_673379.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA3512 putative sulfonate transport system permease protein YP_673380.1 KEGG: pae:PA3513 putative sulfonate transport system substrate-binding protein YP_673381.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pae:PA3514 putative sulfonate transport system ATP-binding protein YP_673383.1 PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B3600 regulatory protein, IclR YP_673384.1 PFAM: Cupin 2, conserved barrel; KEGG: aci:ACIAD0993 hypothetical protein YP_673385.1 PFAM: alpha/beta hydrolase fold; KEGG: bte:BTH_II1498 hydrolase, alpha/beta fold family YP_673386.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sco:SCO6304 oxidoreductase YP_673387.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pae:PA3507 short chain dehydrogenase YP_673388.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: thiamine pyrophosphate-requiring enzyme YP_673389.1 PFAM: aspartate dehydrogenase homoserine dehydrogenase, NAD-binding; KEGG: rso:RS01727 putative L-aspartate dehydrogenase YP_673390.1 PFAM: aldehyde dehydrogenase; KEGG: bte:BTH_II1493 aldehyde dehydrogenase family protein YP_673391.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_3896 ABC transporter, ATP-binding protein YP_673392.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4775 putative iron(III)-transport system permease YP_673393.1 KEGG: bbr:BB4774 putative iron(III)-binding periplasmic protein precursor YP_673394.1 PFAM: peptidase M24; KEGG: rsp:RSP_3444 putative Xaa-Pro aminopeptidase YP_673395.1 PFAM: regulatory protein GntR, HTH; KEGG: mlo:mlr4749 transcriptional regulator YP_673396.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: pca:Pcar_1779 phosphomannomutase YP_673397.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mlo:mll7579 probable aminotransferase YP_673398.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_673399.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis YP_673400.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: mlo:mlr7577 pssB protein, exopolysaccharide production YP_673401.1 PFAM: PfkB; KEGG: rsp:RSP_2257 putative fructokinase YP_673402.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atc:AGR_C_4269 probable transcriptional regulator YP_673403.1 KEGG: sme:SMb20895 probable sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_673404.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atu:Atu2347 ABC transporter, nucleotide binding/ATPase protein [sugar] YP_673405.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_C_4262 membrane-spanning permease YP_673406.1 PFAM: protein of unknown function DUF1238; KEGG: mlo:mll5655 hypothetical protein YP_673407.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_673408.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: sme:SMc00588 putative D-galactose 1-dehydrogenase protein YP_673409.1 PFAM: aldehyde dehydrogenase; KEGG: sme:SMb20262 putative semialdehyde dehydrogenase protein YP_673410.1 PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: atc:AGR_C_1271 2-dehydro-3-deoxygalactonokinase YP_673411.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism YP_673412.1 PFAM: Calcium-binding EF-hand; KEGG: mlo:mlr9645 hypothetical protein YP_673413.1 KEGG: mlo:mll0147 hypothetical protein YP_673415.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc00260 putative oxidoreductase protein YP_673416.1 PFAM: L-asparaginase II; KEGG: mlo:mlr7616 hypothetical protein YP_673417.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: bms:BR0557 death-on-curing family protein YP_673418.1 TIGRFAM: putative addiction module antidote; PFAM: SpoVT/AbrB-like; KEGG: bmb:BruAb1_0580 transcriptional regulator, AbrB family YP_673419.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sme:SMc00431 hypothetical protein YP_673420.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA-like; KEGG: bmb:BruAb1_0581 transporter YP_673421.1 MDM; functions in conversion of succinate to propionate YP_673422.1 PFAM: methylmalonyl-CoA mutase; KEGG: mlo:mll7621 methylmalonyl-CoA small subunit YP_673423.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: mlo:mlr7622 hypothetical protein YP_673424.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bmb:BruAb1_0586 hypothetical protein YP_673425.1 TIGRFAM: haloacid dehalogenase, type II HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mlo:mll7634 2-haloacid halidohydrolase Iva YP_673426.1 PFAM: manganese and iron superoxide dismutase; KEGG: mlo:mlr7636 superoxide dismutase YP_673427.1 PFAM: peptidase S9, prolyl oligopeptidase active site region peptidase S9A, prolyl oligopeptidase-like beta-propeller; KEGG: mlo:mll7643 putative protease II YP_673428.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: sme:SMc00117 peptide methionine sulfoxide reductase YP_673429.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_673430.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport YP_673431.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_673432.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_673433.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_673434.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_673435.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_673436.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mlr7645 transcriptional regulator YP_673437.1 KEGG: bme:BMEI1363 hypothetical cytosolic protein YP_673438.1 PFAM: Chromosomal replication initiator, DnaA-like; KEGG: bmb:BruAb1_0593 hypothetical protein YP_673439.1 KEGG: bme:BMEI1361 hypothetical cytosolic protein YP_673440.1 PFAM: Fe-S metabolism associated SufE; KEGG: bmb:BruAb1_0596 hypothetical protein YP_673441.1 KEGG: mlo:mll7648 hypothetical protein YP_673442.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: mlo:mlr7649 two component histidine sensor kinase YP_673443.1 PFAM: Peptidoglycan-binding domain 1; KEGG: mlo:mlr7650 hypothetical protein YP_673444.1 PFAM: protein of unknown function DUF1491; KEGG: mlo:mlr7652 hypothetical protein YP_673445.1 KEGG: mlo:mll7653 hypothetical protein YP_673446.1 KEGG: mlo:mll7655 hypothetical protein YP_673447.1 PFAM: protein of unknown function DUF1214; KEGG: mlo:mll7656 hypothetical protein YP_673448.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll7657 penicillin-binding protein YP_673450.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix motif; KEGG: bja:bll3011 virulence-associated protein I YP_673452.1 PFAM: protein of unknown function DUF955; KEGG: mag:amb3753 predicted Zn peptidase YP_673454.1 KEGG: bmb:BruAb1_0621 hypothetical protein YP_673455.1 KEGG: mlo:msr7683 hypothetical protein YP_673456.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mlr7684 two-component system, regulatory protein YP_673457.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mlr7686 two-component system, sensor histidine kinase YP_673458.1 KEGG: mlo:mlr7687 hypothetical protein YP_673459.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr7688 cytochrome c-type biogenesis protein cycH YP_673460.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_673461.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: mlo:mlr7690 cytochrome c-type synthesis protein cycK YP_673462.1 PFAM: cytochrome C biogenesis protein; KEGG: mlo:mlr7691 cytochrome C-type biogenesis protein CycL YP_673463.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: mlo:mlr7692 serine protease YP_673464.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mlr7695 two-component response regulator YP_673465.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mlr7697 two-component, sensor histidine kinase YP_673466.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_673467.1 KEGG: bmb:BruAb1_0635 histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3; SMART: PAS PAC motif YP_673468.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: mlo:mll7701 aminopeptidase N YP_673469.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mlr7702 putative dehydrogenase YP_673470.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr7703 hypothetical protein YP_673471.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll7705 putative DNA polymerase bacteriophage-type YP_673472.1 KEGG: mlo:mll4965 hypothetical protein YP_673473.1 PFAM: FAD dependent oxidoreductase electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: mlo:mlr7709 electron transfer flavoprotein dehydrogenase YP_673474.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: cac:CAC0537 acetylxylan esterase, acyl-CoA esterase or GDSL lipase family, strong similarity to C-terminal region of endoglucanase E precursor YP_673475.1 PFAM: acyltransferase 3; KEGG: atc:AGR_C_4279 hypothetical protein YP_673476.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mlo:mll7713 hypothetical protein YP_673477.1 PFAM: Methyltransferase type 12; SMART: Ribosomal RNA adenine methylase transferase; KEGG: ret:RHE_CH00448 phospholipid N-methyltransferase protein YP_673478.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_673479.1 KEGG: mlo:msr7720 hypothetical protein YP_673480.1 PFAM: biotin/lipoyl attachment ATP-dependent carboxylate-amine ligase-like, ATP-grasp Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like RimK-like ATP-grasp; KEGG: mlo:mll7727 3-methylcrotonyl-CoA carboxylase biotin-containing subunit YP_673482.1 PFAM: protein of unknown function DUF922; KEGG: sme:SMb21492 hypothetical protein YP_673485.1 PFAM: Appr-1-p processing; KEGG: mlo:mll7730 hypothetical protein YP_673486.1 PFAM: Curlin associated; KEGG: ret:RHE_PE00164 hypothetical protein YP_673487.1 KEGG: ret:RHE_PE00163 hypothetical protein YP_673488.1 KEGG: ret:RHE_PE00162 hypothetical protein YP_673492.1 PFAM: carboxyl transferase; KEGG: mlo:mll7731 3-methylcrotonyl-CoA carboxylase, beta subunit YP_673493.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: mlo:mll7732 isovaleryl-CoA-dehydrogenase YP_673494.1 KEGG: ret:RHE_CH01243 hypothetical protein YP_673495.1 catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate YP_673496.1 PFAM: DoxX; KEGG: atc:AGR_C_4242 hypothetical protein YP_673497.1 TIGRFAM: conserved hypothetical protein; KEGG: bur:Bcep18194_B2349 hypothetical protein YP_673498.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bba:Bd0314 hypothetical protein YP_673500.1 KEGG: sye:Syncc9902_2113 hypothetical protein YP_673501.1 PFAM: porin; KEGG: sme:SMc02400 probable outer membrane protein YP_673502.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mlo:mll7744 probable soluble lytic murein transglycosylase precursor YP_673503.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_673504.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_673505.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll7751 hypothetical protein YP_673506.1 PFAM: protein of unknown function DUF88; KEGG: mlo:mll7752 hypothetical protein YP_673507.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_673508.1 KEGG: mlo:mlr7755 putative guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT TGS metal-dependent phosphohydrolase, HD subdomain RelA/SpoT; SMART: Metal-dependent phosphohydrolase, HD region YP_673509.1 KEGG: mlo:mlr7760 hypothetical protein YP_673510.1 TIGRFAM: holo-acyl-carrier-protein synthase Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ret:RHE_CH01388 holo-[acyl-carrier-protein] synthase protein YP_673511.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: mlo:mlr7763 signal peptidase I YP_673512.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_673513.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_673514.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_673515.1 PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc02603 putative transport transmembrane protein YP_673516.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF839; KEGG: sme:SMc02634 hypothetical transmembrane protein YP_673517.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mlo:mlr4006 hypothetical protein YP_673518.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr7776 hypothetical protein YP_673519.1 PFAM: RimK-like ATP-grasp; KEGG: mlo:mlr7777 similar to ribosomal protein S6-glutamic acid ligase YP_673520.1 PFAM: metal-dependent phosphohydrolase, HD subdomain; KEGG: sme:SMc02559 hypothetical protein YP_673521.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: mlo:mll7789 hypothetical protein YP_673522.1 KEGG: mlo:mll7791 hypothetical protein YP_673523.1 KEGG: mlo:mll7792 hypothetical protein YP_673524.1 TIGRFAM: conserved hypothetical protein; KEGG: mlo:mll7793 hypothetical protein YP_673525.1 PFAM: NUDIX hydrolase; KEGG: mlo:mll7794 mutator MutT protein YP_673526.1 PFAM: protein of unknown function DUF159; KEGG: atc:AGR_C_1954 hypothetical protein YP_673527.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_673528.1 PFAM: protein of unknown function DUF559; KEGG: ret:RHE_CH01424 hypothetical protein YP_673529.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr7800 hypothetical protein YP_673530.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: mlo:mlr7801 hypothetical protein YP_673531.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: mlo:mlr7805 homocitrate synthase nifV candidate YP_673532.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr7806 RarD protein, chloamphenicol sensitive YP_673533.1 PFAM: conserved hypothetical protein 730; KEGG: mlo:mll7812 hypothetical protein YP_673534.1 PFAM: Peptidoglycan-binding LysM; KEGG: mlo:mlr7813 hypothetical protein YP_673535.1 KEGG: mlo:mll1459 hypothetical protein YP_673536.1 PFAM: regulatory protein, ArsR; KEGG: mlo:mlr7816 transcriptional regulator YP_673537.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: bms:BR0442 ABC transporter, ATP-binding/permease protein YP_673538.1 PFAM: aldo/keto reductase; KEGG: mlo:mll3531 hypothetical protein YP_673539.1 KEGG: sme:SMb21456 hypothetical protein YP_673540.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_673541.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bmb:BruAb1_0466 PssA, CDP-diacylglycerol--serine O-phosphatidyltransferase YP_673542.1 KEGG: mlo:mll7824 2-acylglycerophosphoethanolamine acyl transferase/acyl carrier protein synthetase YP_673543.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll7832 probable oxidoreductase YP_673544.1 PFAM: small multidrug resistance protein; KEGG: gvi:gll2987 sugE protein YP_673545.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_673546.1 PFAM: Colicin V production protein; KEGG: mlo:mll7834 colicin V production protein YP_673547.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_673548.1 TIGRFAM: alanine racemase; PFAM: alanine racemase-like; KEGG: sme:SMc00557 putative alanine racemase protein YP_673549.1 unwinds double stranded DNA YP_673550.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mll7842 cyclopropane-fatty-acyl-phospholipid synthase YP_673551.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_673552.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ-like phosphoesterase, DHHA1; KEGG: mlo:mll0927 single-strand DNA-specific exonuclease YP_673553.1 KEGG: sme:SMc00805 hypothetical protein YP_673554.1 PFAM: Tetratricopeptide TPR_4; KEGG: bja:blr6641 hypothetical protein YP_673555.1 KEGG: ret:RHE_CH02673 hypothetical protein YP_673556.1 PFAM: protein of unknown function DUF899, thioredoxin-like; KEGG: rso:RSc1113 hypothetical protein YP_673557.1 PFAM: Xylose isomerase-like TIM barrel; KEGG: sme:SMc03130 hypothetical protein YP_673558.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sme:SMc03129 putative glycerophosphoryl diester phosphodiesterase YP_673559.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03128 putative transport system permease ABC transporter protein YP_673560.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03127 putative transport system permease ABC transporter protein YP_673561.1 KEGG: sme:SMc03126 putative transport system ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_673562.1 KEGG: sme:SMc03125 putative transport system ATP-binding ABC transporter protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_673563.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMc03124 putative periplasmic binding ABC transporter protein YP_673564.1 PFAM: Patatin; KEGG: mlo:mlr0925 hypothetical protein YP_673565.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: mlo:mlr0923 phosphoribosyl c-AMP cyclohydrolase YP_673566.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_673567.1 KEGG: mlo:mll0920 hypothetical protein YP_673568.1 PFAM: protein of unknown function DUF37; KEGG: mlo:mll0918 hypothetical protein YP_673569.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_673570.1 KEGG: mag:amb4432 hypothetical protein YP_673571.1 KEGG: mag:amb4433 hypothetical protein YP_673572.1 KEGG: mlo:mlr0912 hypothetical protein YP_673573.1 PFAM: nitroreductase; KEGG: mlo:mll0911 hypothetical protein YP_673574.1 PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr0906 citrate lyase beta chain YP_673575.1 PFAM: MaoC-like dehydratase; KEGG: mlo:mlr0905 probable monoamine oxidase regulatory protein YP_673576.1 KEGG: atc:AGR_C_3197 hypothetical protein YP_673577.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_673578.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_673579.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_673580.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_673581.1 PFAM: protein of unknown function DUF188; KEGG: mlo:mlr0875 hypothetical protein YP_673582.1 PFAM: biotin/lipoyl attachment Carbamoyl-phosphate synthase L chain, ATP-binding Carbamoyl-phosphate synthetase large chain-like biotin carboxylase-like RimK-like ATP-grasp; KEGG: mlo:mll0871 propionyl-CoA carboxylase alpha chain precursor YP_673583.1 PFAM: protein of unknown function DUF1006; KEGG: mlo:mlr1373 hypothetical protein YP_673584.1 Catalyzes the transfer of electrons from NADH to quinone YP_673585.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_673586.1 Catalyzes the transfer of electrons from NADH to quinone YP_673587.1 Catalyzes the transfer of electrons from NADH to quinone YP_673588.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: atc:AGR_C_2348 NADH dehydrogenase I chain E YP_673589.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_673590.1 Catalyzes the transfer of electrons from NADH to quinone YP_673591.1 Catalyzes the transfer of electrons from NADH to quinone YP_673592.1 Catalyzes the transfer of electrons from NADH to quinone YP_673593.1 Catalyzes the transfer of electrons from NADH to quinone YP_673594.1 Catalyzes the transfer of electrons from NADH to quinone YP_673595.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_673596.1 Catalyzes the transfer of electrons from NADH to quinone YP_673597.1 Catalyzes the transfer of electrons from NADH to quinone YP_673598.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase-like biotin/lipoate A/B protein ligase; KEGG: mlo:mll1351 biotin-protein ligase birA YP_673599.1 PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: mlo:mll1350 hypothetical protein YP_673600.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01621 putative lactoylglutathione lyase protein YP_673601.1 PFAM: protein of unknown function DUF1467; KEGG: mlo:msl1345 hypothetical protein YP_673602.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_673603.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mlo:mll1342 ABC transporter, permease protein YP_673604.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ret:RHE_CH01625 probable lipoprotein ABC transporter, ATP-binding protein YP_673605.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bur:Bcep18194_B0660 glyoxalase/bleomycin resistance protein/dioxygenase YP_673606.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: rsp:RSP_3272 gamma-glutamyltranspeptidase YP_673607.1 lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism YP_673608.1 PFAM: Cl- channel, voltage gated; KEGG: mlo:mll4356 chloride channel protein YP_673609.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein YP_673610.1 PFAM: protein of unknown function DUF453; KEGG: bba:Bd2841 hypothetical protein YP_673611.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein YP_673612.1 PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein YP_673613.1 KEGG: bja:bll6809 hypothetical protein YP_673614.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:blr2858 probable sulfopyruvate decarboxylase YP_673615.1 PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_2660 hypothetical protein YP_673616.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fra:Francci3_1239 short-chain dehydrogenase/reductase SDR YP_673617.1 KEGG: eba:p2A115 hypothetical protein, potential permease subunit YP_673618.1 PFAM: NHL repeat; KEGG: bja:bll1368 hypothetical protein YP_673619.1 PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase YP_673620.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bbr:BB1050 putative dehydrogenase YP_673621.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein YP_673622.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:blr5325 hypothetical protein YP_673623.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:bll2319 transcriptional regulatory protein YP_673624.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: bme:BMEII0351 acetolactate synthase large subunit YP_673625.1 KEGG: mka:MK1449 demethylmenaquinone methyltransferase YP_673626.1 catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica YP_673627.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bpe:BP2780 putative malate dehydrogenase YP_673629.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: sme:SMc00500 putative tricarboxylic transport membrane protein YP_673630.1 KEGG: bja:bll3172 putative sulfopyruvate decarboxylase subunit alpha YP_673631.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding; KEGG: bja:bll3171 hypothetical protein YP_673632.1 KEGG: bur:Bcep18194_A4907 hypothetical protein YP_673633.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein YP_673634.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein YP_673635.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein YP_673636.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: bja:blr6118 hypothetical protein YP_673637.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase YP_673638.1 PFAM: Hydratase/decarboxylase; KEGG: reu:Reut_B5691 4-oxalocrotonate decarboxylase YP_673639.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1535 hypothetical protein YP_673640.1 PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase YP_673641.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: sme:SMc00501 hypothetical protein YP_673642.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bur:Bcep18194_B0500 D-isomer specific 2-hydroxyacid dehydrogenase YP_673643.1 PFAM: FAD dependent oxidoreductase; KEGG: rpb:RPB_1451 FAD dependent oxidoreductase YP_673644.1 PFAM: amidohydrolase; KEGG: bja:blr3165 putative adenine deaminase YP_673645.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein MgtE integral membrane region MgtE intracellular region; KEGG: mlo:mll1318 magnesium transporter YP_673646.1 PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: bmb:BruAb1_1257 RNA methyltransferase, TrmH family, group 3 YP_673647.1 TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bja:bll4069 exodeoxyribonuclease III YP_673648.1 KEGG: ret:RHE_PE00063 putative hydrolase protein YP_673650.1 PFAM: protein of unknown function DUF305; KEGG: tbd:Tbd_2305 hypothetical protein YP_673651.1 PFAM: regulatory protein, MarR; KEGG: reu:Reut_B3774 regulatory protein, MarR YP_673652.1 TIGRFAM: Twin-arginine translocation pathway signal TRAP transporter solute receptor, TAXI family; KEGG: bha:BH2947 immunogenic protein YP_673653.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmu:PM1580 hypothetical A. fulgidus YP_673654.1 TIGRFAM: conserved hypothetical protein; KEGG: rru:Rru_A2729 hypothetical protein YP_673655.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: sth:STH770 LacI family transcriptional repressor YP_673656.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sco:SCO7028 putative sugar-binding lipoprotein. YP_673657.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0435 sugar ABC transporter permease YP_673658.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3682 multiple sugar transport system permease protein YP_673659.1 KEGG: sma:SAV1919 hypothetical protein YP_673660.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_PF00090 probable sugar ABC transporter, ATP-binding protein YP_673661.1 PFAM: ETC complex I subunit conserved region; KEGG: sme:SMc00287 putative oxidoreductase protein YP_673664.1 KEGG: bja:bll3691 hypothetical protein YP_673669.1 KEGG: rpb:RPB_2922 hypothetical protein YP_673670.1 KEGG: ret:RHE_CH01272 hypothetical protein YP_673672.1 KEGG: dra:DR0691 hypothetical protein YP_673673.1 catalyzes the formation of L-homocysteine from cystathionine YP_673674.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: sme:SMc02118 probable general L-amino acid-binding periplasmic ABC transporter protein YP_673675.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02119 probable general L-amino acid transport permease ABC transporter protein YP_673676.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2562 polar amino acid ABC transport permease protein aapM-1 YP_673677.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bmb:BruAb1_0762 amino acid ABC transporter, ATP-binding protein YP_673678.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: mlo:mll8158 salicylate hydroxylase YP_673679.1 KEGG: sme:SMc02115 hypothetical unknown protein YP_673680.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_673681.1 PFAM: Ppx/GppA phosphatase; KEGG: mlo:mlr8162 exopolyphosphatase YP_673682.1 TIGRFAM: ribonuclease D; PFAM: HRDC 3'-5' exonuclease; KEGG: mlo:mll8354 ribonuclease D YP_673683.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_673684.1 KEGG: mlo:mll8359 hypothetical protein YP_673685.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_673686.1 KEGG: ade:Adeh_1548 hypothetical protein YP_673687.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sme:SMc01149 hypothetical protein YP_673688.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_673689.1 PFAM: RDD domain containing protein; KEGG: mlo:mll8365 hypothetical protein YP_673690.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_673691.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_673692.1 KEGG: mlo:mlr8393 hypothetical protein YP_673693.1 PFAM: regulatory protein, MarR; KEGG: mlo:mlr8394 transcriptional regulator YP_673694.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Peptidoglycan-binding domain 1; KEGG: mlo:mlr8397 hypothetical protein YP_673695.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_673696.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone; KEGG: mlo:mlr8403 ATP-cone domain protein YP_673697.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding bifunctional deaminase-reductase-like; KEGG: mlo:mlr8405 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_673698.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_673699.1 PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: atc:AGR_C_2165 riboflavin synthase YP_673700.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_673701.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8412 hypothetical protein YP_673702.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_673703.1 PFAM: SmpA/OmlA; KEGG: mlo:mll8419 hypothetical protein YP_673704.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mlo:mlr8420 hypothetical protein YP_673705.1 KEGG: bmb:BruAb1_0790 hypothetical protein YP_673706.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_673707.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_673708.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_673709.1 PFAM: regulatory protein, MerR; KEGG: mlo:mlr8426 hypothetical protein YP_673710.1 PFAM: Ku domain containing protein; KEGG: ret:RHE_PE00249 hypothetical protein YP_673711.1 PFAM: ATP dependent DNA ligase-like ATP dependent DNA ligase; KEGG: atc:AGR_L_502 probable ATP-dependent DNA ligase PA2138 YP_673712.1 PFAM: Ku domain containing protein; KEGG: ret:RHE_PE00250 hypothetical protein YP_673713.1 PFAM: Integral membrane protein TerC; KEGG: sme:SMc04175 putative transmembrane protein YP_673714.1 KEGG: mlo:mll8434 hypothetical protein YP_673715.1 PFAM: sugar transferase; KEGG: mlo:mll8435 probable glycosyl transferase YP_673716.1 PFAM: glycosyl transferase, group 1; KEGG: mlo:mll8436 putative transferase YP_673717.1 PFAM: polysaccharide export protein; KEGG: bmb:BruAb1_0798 capsule polysaccharide export protein, hypothetical YP_673718.1 TIGRFAM: exopolysaccharide transport protein family; PFAM: lipopolysaccharide biosynthesis; KEGG: mlo:mlr8439 succinoglycan transport protein ExoP YP_673719.1 KEGG: mlo:mll8447 hypothetical protein YP_673720.1 KEGG: mlo:msl8449 hypothetical protein YP_673721.1 PFAM: cytochrome oxidase assembly; KEGG: mlo:mlr8450 cytochrome c oxidase assembly protein YP_673722.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_673723.1 catalyzes the formation of putrescine from agmatine YP_673724.1 forms a direct contact with the tRNA during translation YP_673725.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_673726.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr8462 hypothetical protein YP_673727.1 PFAM: CoA-binding; KEGG: mlo:mlr8464 hypothetical protein YP_673728.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_673730.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_673731.1 binds and unfolds substrates as part of the ClpXP protease YP_673732.1 KEGG: mlo:mlr8476 ATP-dependent protease Lon; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon-like AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_673733.1 PFAM: histone-like DNA-binding protein; KEGG: mlo:msr8478 DNA-binding protein HRm YP_673734.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA1310 putative NADH:flavin oxidoreductase YP_673736.1 PFAM: sodium/calcium exchanger membrane region; KEGG: sme:SMb21369 hypothetical protein YP_673737.1 PFAM: protein of unknown function DUF1206; KEGG: psb:Psyr_2236 protein of unknown function DUF1206 YP_673738.1 KEGG: mlo:mlr2577 hypothetical protein YP_673739.1 PFAM: Ion transport protein Ion transport 2; KEGG: mlo:mll0869 ion transporter YP_673740.1 PFAM: NUDIX hydrolase; KEGG: hch:HCH_06993 ADP-ribose pyrophosphatase YP_673746.1 PFAM: HNH endonuclease; KEGG: mlo:mll7975 hypothetical protein YP_673747.1 PFAM: heat shock protein DnaJ-like YP_673748.1 KEGG: sty:STY2074 hypothetical protein YP_673749.1 KEGG: ecj:JW1344 exonuclease VIII, 5' -> 3' specific dsDNA exonuclease YP_673752.1 PFAM: protein of unknown function DUF955; KEGG: mag:amb3753 predicted Zn peptidase YP_673754.1 PFAM: peptidase S24, S26A and S26B; KEGG: bja:blr6135 hypothetical protein YP_673757.1 KEGG: bmb:BruAb1_0975 hypothetical protein YP_673760.1 PFAM: helicase-like; SMART: DEAD/DEAH box helicase-like; KEGG: sas:SAS0928 hypothetical protein YP_673761.1 PFAM: DNA methylase N-4/N-6; KEGG: tth:TTC0041 methyltransferase YP_673765.1 PFAM: DnaB-like helicase-like; KEGG: atc:AGR_C_2006 replicative DNA helicase YP_673769.1 PFAM: phage integrase; KEGG: nwi:Nwi_1633 phage integrase YP_673773.1 TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; KEGG: xft:PD0992 phage-related protein YP_673774.1 TIGRFAM: phage-associated protein, HI1409 family; KEGG: mlo:mlr8004 hypothetical protein YP_673776.1 KEGG: mlo:mlr8006 hypothetical protein YP_673777.1 KEGG: mca:MCA2924 hypothetical protein YP_673778.1 KEGG: bhe:BH03290 phage protein GP20 YP_673780.1 PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like YP_673781.1 KEGG: mlo:mlr8011 hypothetical protein YP_673782.1 KEGG: mlo:mlr8012 hypothetical protein YP_673784.1 KEGG: mlo:mlr8013 hypothetical protein YP_673785.1 KEGG: mlo:mlr8014 hypothetical protein YP_673786.1 KEGG: bmb:BruAb2_0094 hypothetical protein YP_673787.1 KEGG: mlo:mlr8015 hypothetical protein YP_673789.1 KEGG: rsp:RSP_3787 hypothetical protein YP_673792.1 KEGG: rsp:RSP_2351 hypothetical protein YP_673799.1 KEGG: bms:BRA0423 outer membrane protein, 31 kDa YP_673800.1 KEGG: bmf:BAB2_0084 hypothetical protein YP_673801.1 KEGG: mlo:msl0440 hypothetical protein YP_673804.1 member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_673805.1 PFAM: blue (type 1) copper domain; KEGG: hma:pNG6030 putative copper binding protein YP_673806.1 KEGG: tth:TT_P0163 hypothetical protein YP_673807.1 PFAM: protein of unknown function DUF1696; KEGG: son:SO3796 hypothetical protein YP_673808.1 KEGG: rsp:RSP_3768 hypothetical protein YP_673809.1 PFAM: protein of unknown function DUF159; KEGG: mlo:mll8062 hypothetical protein YP_673810.1 KEGG: mlo:mlr7388 hypothetical protein YP_673811.1 PFAM: nuclease (SNase-like); KEGG: nha:Nham_3090 nuclease (SNase-like) YP_673813.1 KEGG: syn:slr1396 hypothetical protein YP_673814.1 Converts glucose to D-glucono-1,5 lactone YP_673815.1 KEGG: mlo:msl9673 hypothetical protein YP_673816.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_673817.1 KEGG: bms:BRA0357 disulfide bond formation protein DsbB, putative YP_673818.1 KEGG: bms:BRA0356 hypothetical protein YP_673819.1 PFAM: protein of unknown function DUF218; KEGG: rpa:RPA3160 DUF218 YP_673820.1 PFAM: regulatory protein, MerR; KEGG: mlo:mll1317 probable transcriptional regulator YP_673821.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: mlo:mlr1316 hypothetical protein YP_673822.1 PFAM: protein of unknown function DUF1624; KEGG: mlo:mlr1315 hypothetical protein YP_673823.1 PFAM: OmpA/MotB 17 kDa surface antigen; KEGG: ret:RHE_CH02810 outer membrane lipoprotein YP_673824.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_673825.1 PFAM: PfkB; KEGG: mlo:mll0029 carbohydrate kinase YP_673826.1 PFAM: Indigoidine synthase A like protein; KEGG: mlo:mll0028 hypothetical protein YP_673827.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_673828.1 Converts isocitrate to alpha ketoglutarate YP_673829.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mlo:mlr0038 RNA methyltransferase YP_673830.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_673831.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_673832.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs YP_673833.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH02305 probable drug resistance transporter protein, Bcr/CflA family YP_673834.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mlo:mll0053 monothiol glutaredoxin YP_673835.1 PFAM: BioY protein; KEGG: mlo:mlr7429 bioY protein YP_673836.1 KEGG: mlo:mlr7430 hypothetical protein YP_673837.1 PFAM: BolA-like protein; KEGG: mlo:msl0055 hypothetical protein YP_673838.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_673839.1 KEGG: mlo:mll0062 hypothetical protein YP_673840.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_673841.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_673842.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_673843.1 PFAM: protein of unknown function DUF1476; KEGG: mlo:mlr0071 hypothetical protein YP_673844.1 PFAM: protein of unknown function DUF1234; KEGG: mlo:mll0076 hypothetical protein YP_673845.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr0078 hypothetical protein YP_673846.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_673847.1 KEGG: mlo:mll0081 hypothetical protein YP_673848.1 PFAM: peptidase S58, DmpA; KEGG: mlo:mll0085 hypothetical protein YP_673849.1 PFAM: Extracellular ligand-binding receptor; KEGG: mlo:mll0086 amino acid binding protein YP_673850.1 PFAM: flavin reductase-like, FMN-binding; KEGG: mlo:mlr0087 putative 4-hydroxyphenylacetate 3-monooxygenase YP_673851.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: mlo:mlr0088 hypothetical protein YP_673852.1 PFAM: VWA containing CoxE-like; SMART: von Willebrand factor, type A; KEGG: mlo:mlr0089 hypothetical protein YP_673853.1 PFAM: protein of unknown function DUF182; KEGG: mlo:mlr0091 hypothetical protein YP_673854.1 PFAM: protein of unknown function DUF182; KEGG: mlo:mlr0092 xanthine dehydrogenase accessory factor YP_673855.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mlo:mlr0093 hypothetical protein YP_673856.1 PFAM: phospholipase/Carboxylesterase; KEGG: mlo:mlr0094 hypothetical protein YP_673857.1 KEGG: mlo:mll0095 hypothetical protein YP_673858.1 KEGG: mlo:msr0099 hypothetical protein YP_673859.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mlo:mll4906 multidrug efflux protein (NorM) YP_673860.1 PFAM: protein of unknown function DUF1194; KEGG: mlo:mll1257 hypothetical protein YP_673861.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll1248 probable transcriptional regulator YP_673862.1 KEGG: sme:SMc03959 hypothetical protein YP_673863.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: ccr:CC3598 hypothetical protein YP_673864.1 PFAM: Entericidin EcnAB; KEGG: sme:SMc04332 putative entericidin B signal peptide protein YP_673865.1 KEGG: mlo:mlr3184 hypothetical protein YP_673867.1 KEGG: mlo:mlr3183 hypothetical protein YP_673869.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mlo:mlr1203 3-hydroxyisobutyrate dehydrogenase YP_673870.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1197 hypothetical protein YP_673871.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr1190 probable ATP-binding component of ABC transporter YP_673872.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr1189 permease protein of oligopeptide ABC transporter YP_673873.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr1187 permease protein of oligopeptide ABC transporter YP_673874.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr1186 dipeptide-binding protein of ABC transporter YP_673875.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: mlo:mll1184 hypothetical protein YP_673876.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_673878.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mlr1178 alcohol dehydrogenase YP_673879.1 FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_673880.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_673881.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_673882.1 PFAM: Phosphoglycerate mutase; KEGG: mlo:mlr1171 hypothetical protein YP_673883.1 PFAM: Auxin Efflux Carrier; KEGG: mlo:mll1169 probable MdcF malonate transporter YP_673884.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mlo:mll1168 succinate-semialdehyde dehydrogenase YP_673885.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr1161 proline dehydrogenase transcriptional activator YP_673886.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain YP_673887.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: bps:BPSS0489 hypothetical protein YP_673888.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: hch:HCH_03320 hypothetical protein YP_673889.1 PFAM: Excinuclease ABC, C subunit-like; KEGG: mlo:msr4424 putative endonuclease YP_673893.1 Catalyzes the rate-limiting step in dNTP synthesis YP_673894.1 PFAM: phosphate transporter; KEGG: sil:SPO0967 phosphate transporter family protein YP_673895.1 PFAM: NUDIX hydrolase; KEGG: mlo:mll0140 hypothetical protein YP_673896.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively YP_673897.1 PFAM: peptidase S14, ClpP; KEGG: pae:PA3326 probable Clp-family ATP-dependent protease YP_673899.1 PFAM: protein of unknown function DUF305; KEGG: sme:SMa1024 hypothetical protein YP_673900.1 PFAM: UspA; KEGG: mlo:mll0142 hypothetical protein YP_673901.1 PFAM: molybdopterin binding domain; KEGG: mlo:mll0144 hypothetical protein YP_673902.1 stationary phase protein that binds TrpR repressor YP_673903.1 PFAM: TadE-like; KEGG: mlo:mll7596 hypothetical protein YP_673904.1 KEGG: mlo:mll7595 hypothetical protein YP_673905.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_673906.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_CH01630 putative acetyltransferase protein YP_673907.1 KEGG: mlo:mlr0862 hypothetical protein YP_673908.1 PFAM: response regulator receiver; KEGG: mlo:mll0861 response regulator YP_673909.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP YP_673911.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_673912.1 PFAM: NUDIX hydrolase; KEGG: mlo:mlr0843 hypothetical protein YP_673913.1 PFAM: protein of unknown function DUF983; KEGG: mlo:mlr0842 hypothetical protein YP_673914.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases ribonuclease R; PFAM: ribonuclease II RNA binding S1; KEGG: mlo:mlr0841 ribonuclease R YP_673915.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_673917.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF protein; KEGG: mlo:mlr0689 DNA processing chain A YP_673918.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_673919.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_673920.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_673921.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: mlo:mll0685 probable acyl-CoA dehydrogenase YP_673922.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H-like fold; KEGG: ret:RHE_CH01852 probable Holliday junction resolvase protein YP_673923.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_673924.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: mlo:msl0677 Glu-tRNA(Gln) amidotransferase subunit C YP_673925.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll0676 acetyl transferase YP_673926.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_673927.1 PFAM: protein of unknown function DUF218; KEGG: mlo:mll0674 hypothetical protein YP_673928.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain serine dehydratase beta chain; KEGG: mlo:mll0670 L-serine dehydratase YP_673929.1 PFAM: Uncharacterised conserved protein UCP032025; KEGG: mlo:mll0669 hypothetical protein YP_673930.1 KEGG: rpa:RPA3152 hypothetical protein YP_673931.1 PFAM: heat shock protein DnaJ-like; KEGG: mlo:mll0667 hypothetical protein YP_673932.1 PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Sporulation related; KEGG: mlo:mlr0666 penicillin-binding protein YP_673933.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: mlo:mll0664 hypothetical protein YP_673934.1 KEGG: mlo:mll0663 endopeptidase Clp ATP-binding chain A; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase YP_673935.1 PFAM: O-antigen polymerase; KEGG: ret:RHE_CH00790 hypothetical protein YP_673936.1 PFAM: glycosyl transferase, family 25; KEGG: atc:AGR_C_3310 glycosyl transferase, family 25 YP_673937.1 PFAM: histidine triad (HIT) protein; KEGG: mlo:mlr0662 probable Hit-like protein involved in cell-cycle regulation YP_673938.1 PFAM: protein of unknown function DUF482; KEGG: mlo:mlr0661 hypothetical protein YP_673939.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: mlo:mlr0660 probable phosphodiesterase YP_673940.1 PFAM: Endoribonuclease L-PSP; KEGG: mlo:mlr0658 hypothetical protein YP_673941.1 KEGG: mlo:mll0656 hypothetical protein YP_673942.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_673943.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_673944.1 Catalyzes the phosphorylation of UMP to UDP YP_673945.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_673946.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: bms:BR1158 undecaprenyl diphosphate synthase YP_673947.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mlo:mll0639 phosphatidate cytidylyltransferase YP_673948.1 KEGG: mlo:mll0638 hypothetical zinc metalloprotease; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF YP_673949.1 PFAM: surface antigen (D15) surface antigen variable number Polypeptide-transport-associated, FtsQ-type; KEGG: mlo:mll0636 outer membrane protein YP_673950.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_673951.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_673952.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_673953.1 PFAM: protein of unknown function DUF1009; KEGG: mlo:mll0631 hypothetical protein YP_673954.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_673955.1 PFAM: protein of unknown function DUF72; KEGG: mlo:mlr0752 hypothetical protein YP_673956.1 KEGG: bja:blr1415 hypothetical glutathione S-transferase like protein YP_673957.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_673958.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: mlo:mll0743 single-strand DNA-binding protein YP_673959.1 KEGG: sme:SMb21440 hypothetical protein YP_673960.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: mlo:mlr0740 putative multiple antibiotic resistance protein YP_673961.1 negatively supercoils closed circular double-stranded DNA YP_673962.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mlr3188 hypothetical protein YP_673963.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_673964.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: mlo:mll0728 peptidyl prolyl cis-trans isomerase YP_673965.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: sme:SMc01208 putative peptidyl-prolyl cis-trans isomerase B protein YP_673966.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_673967.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_673968.1 PFAM: regulatory protein, LuxR Autoinducer-binding; KEGG: ret:RHE_CH02915 autoinducer transcriptional regulator protein YP_673969.1 KEGG: bmf:BAB1_1043 hypothetical protein YP_673970.1 KEGG: atc:AGR_C_2493 hypothetical protein YP_673971.1 PFAM: ferredoxin; KEGG: mlo:msl0793 ferredoxin YP_673972.1 PFAM: protein of unknown function DUF922; KEGG: mlo:mlr0789 hypothetical protein YP_673973.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: mlo:mll0788 dihydropteroate synthase YP_673974.1 TIGRFAM: dihydroneopterin aldolase; KEGG: mlo:mll0787 dihydroneopterin aldolase YP_673975.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: mlo:mll0786 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_673976.1 KEGG: bmb:BruAb1_1037 hypothetical protein YP_673977.1 PFAM: conserved hypothetical protein 1620; KEGG: mlo:mlr0776 hypothetical protein YP_673978.1 PFAM: protein of unknown function DUF463, YcjX-like protein; KEGG: mlo:mlr0775 hypothetical protein YP_673979.1 PFAM: Phosphoglycerate mutase; KEGG: mlo:mlr0774 hypothetical protein YP_673980.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: mlo:mll0773 DnaK suppressor protein YP_673982.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_673983.1 PFAM: protein of unknown function DUF1697; KEGG: mlo:mlr0163 hypothetical protein YP_673984.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: mlo:mlr0349 ATP-dependent RNA helicase YP_673985.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_673986.1 PFAM: secretory lipase; KEGG: nfa:nfa31360 hypothetical protein YP_673987.1 PFAM: Rhodanese-like; KEGG: mlo:mlr0355 thiosulfate sulfurtransferase YP_673988.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr0356 hypothetical protein YP_673989.1 TIGRFAM: alanine dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding alanine dehydrogenase/PNT-like; KEGG: mlo:mll9089 alanine dehydrogenase YP_673990.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr0363 leucine-responsive regulator YP_673991.1 PFAM: Stress responsive alpha-beta barrel; KEGG: bja:bll2093 hypothetical protein YP_673992.1 PFAM: glycosyl transferase, family 51; KEGG: sme:SMa1905 putative MrcB penicillin binding protein B YP_673993.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_673994.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ret:RHE_CH03262 hypothetical protein YP_673996.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sme:SMc01515 TonB protein YP_673997.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: jan:Jann_2128 hypothetical protein YP_673998.1 KEGG: jan:Jann_2129 biopolymer transport protein ExbD/TolR YP_673999.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel YP_674000.1 KEGG: mlo:mlr1156 hypothetical protein YP_674001.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: mlo:mlr1155 heme acquisition protein hasR YP_674002.1 KEGG: ret:RHE_CH03267 hemin transport system, hemin uptake protein YP_674003.1 PFAM: periplasmic binding protein; KEGG: sme:SMc01512 putative hemin binding periplasmic transmembrane protein YP_674004.1 PFAM: transport system permease protein; KEGG: mlo:mll1150 permease protein of ABC transporter YP_674005.1 with HmuTU is involved in the transport of hemin YP_674006.1 rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons YP_674007.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr4162 hypothetical protein YP_674008.1 PFAM: sigma-70 region 2 sigma-70 region 4 Sigma-70, region 4 type 2; KEGG: rsp:RSP_2681 sigma factor, RpoE YP_674009.1 PFAM: response regulator receiver ANTAR; KEGG: mlo:mlr2855 two-component response regulator YP_674010.1 KEGG: mlo:mlr2856 nitrate transporter component, nrtA YP_674011.1 PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_CH01783 probable nitrate transporter protein YP_674012.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region BFD-like [2Fe-2S]-binding region; KEGG: nwi:Nwi_0719 BFD-like (2Fe-2S)-binding region YP_674013.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] region; KEGG: mlo:mlr2863 nitrite reductase small subunit YP_674014.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region BFD-like [2Fe-2S]-binding region; KEGG: mlo:mlr2864 nitrate reductase large subunit YP_674015.1 PFAM: DNA repair protein RadC; KEGG: atc:AGR_C_2959 DNA repair protein RadC homolog YP_674016.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_674017.1 Regulatory factor involved in maltose metabolism YP_674018.1 PFAM: MscS Mechanosensitive ion channel; KEGG: rsp:RSP_1895 small-conductance mechanosensitive ion channel YP_674019.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_674020.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_674021.1 KEGG: mlo:mll0525 hypothetical protein YP_674022.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_674023.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; KEGG: mlo:mll0826 phospho-2-dehydro-3-deoxyheptonate aldolase YP_674024.1 NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_674025.1 synthesizes RNA primers at the replication forks YP_674026.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_674027.1 KEGG: sme:SMc01562 hypothetical protein YP_674028.1 PFAM: protein of unknown function UPF0047; KEGG: sme:SMc01559 hypothetical protein YP_674029.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nwi:Nwi_0688 3-demethylubiquinone-9 3-methyltransferase YP_674030.1 PFAM: glutathione S-transferase-like; KEGG: ret:RHE_CH01001 glutathione S-transferase protein YP_674031.1 KEGG: bmb:BruAb1_1473 hypothetical protein YP_674032.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sil:SPOA0438 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_674033.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH04090 hypothetical protein YP_674034.1 PFAM: sigma-70 region 2 Tetratricopeptide TPR_2 Sigma-70, region 4 type 2; KEGG: mlo:mll2869 probable sigma-70 factor, ECF subfamily YP_674035.1 PFAM: DGPFAETKE; KEGG: sme:SMc01151 conserved hypothetical protein YP_674036.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_674037.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_674038.1 PFAM: protein of unknown function DUF378; KEGG: xcb:XC_1493 hypothetical protein YP_674039.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: ret:RHE_CH01204 probable phosphatase protein YP_674040.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: mlo:mlr1282 aspartate transaminase YP_674041.1 PFAM: helix-turn-helix motif Cupin 2, conserved barrel; KEGG: mlo:mlr1279 probable transcriptional regulator YP_674042.1 PFAM: nitroreductase; KEGG: mlo:mll1278 nitroreductase YP_674043.1 KEGG: bmb:BruAb1_1334 hypothetical acid-shock protein YP_674044.1 PFAM: GAF HWE histidine kinase; KEGG: sme:SMa1696 hypothetical protein YP_674045.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI; KEGG: bja:bll8044 proteinase YP_674046.1 PFAM: cyclic nucleotide-binding; KEGG: ret:RHE_CH02940 probable transcriptional regulator protein, Fnr/CRP family YP_674047.1 PFAM: protein of unknown function DUF87; KEGG: mlo:mlr1445 hypothetical protein YP_674048.1 KEGG: lpp:lpp0258 hypothetical protein YP_674049.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: mlo:mll1433 acetolactate synthase large subunit YP_674050.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_674051.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mll1430 hypothetical protein YP_674052.1 KEGG: mlo:mll1421 exodeoxyribonuclease V YP_674053.1 KEGG: bms:BR1386 hypothetical protein YP_674054.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_674056.1 PFAM: regulatory protein, TetR; KEGG: ret:RHE_CH02745 probable transcriptional regulator protein, TetR family YP_674057.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_674058.1 PFAM: BA14K-like; KEGG: bmb:BruAb2_0637 hypothetical protein YP_674059.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1372 hypothetical protein YP_674060.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mlo:mll1393 hypothetical protein YP_674061.1 PFAM: MscS Mechanosensitive ion channel; KEGG: dps:DP1066 hypothetical protein YP_674062.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family YP_674063.1 PFAM: MCP methyltransferase, CheR-type Methyltransferase type 11 Methyltransferase type 12; KEGG: jan:Jann_3711 methyltransferase type 12 YP_674065.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_321 dipeptide transport system permease protein DppC YP_674066.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psb:Psyr_2679 binding-protein-dependent transport systems inner membrane component YP_674067.1 PFAM: extracellular solute-binding protein, family 5; KEGG: psp:PSPPH_2786 ABC-transport protein, solute-binding component YP_674068.1 PFAM: ROK domain containing protein; KEGG: ret:RHE_CH01552 probable transcriptional regulator protein, ROK family YP_674069.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rba:RB2532 glucosamine-6-phosphate isomerase YP_674070.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: rpa:RPA2331 possible gamma-glutamyltranspeptidase YP_674071.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: rpb:RPB_1648 ABC transporter related YP_674072.1 PFAM: protein of unknown function DUF81; KEGG: tcx:Tcr_1412 protein of unknown function DUF81 YP_674073.1 PFAM: Sporulation related Lytic transglycosylase, catalytic; KEGG: mlo:mll3791 transglycosylase YP_674074.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01711 hypothetical protein YP_674075.1 KEGG: sme:SMc01710 hypothetical protein YP_674076.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01710 hypothetical protein YP_674077.1 KEGG: ttj:TTHB183 hypothetical protein YP_674078.1 KEGG: ttj:TTHB183 hypothetical protein YP_674079.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01709 hypothetical signal peptide protein YP_674080.1 KEGG: sme:SMb20089 hypothetical protein YP_674081.1 PFAM: protein of unknown function DUF490; KEGG: bmb:BruAb1_0049 hypothetical protein YP_674082.1 PFAM: surface antigen (D15) surface antigen variable number; KEGG: bmb:BruAb1_0048 hypothetical protein YP_674084.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_674085.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: nwi:Nwi_2993 3-hydroxyacyl-CoA dehydrogenase NAD-binding YP_674086.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ana:alr5182 oxidoreductase YP_674087.1 KEGG: mlo:msr0042 hypothetical protein YP_674088.1 TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20; KEGG: reu:Reut_A0416 glycosyl transferase, family 20 YP_674089.1 PFAM: glycoside hydrolase 15-related; KEGG: reu:Reut_A0415 glycoside hydrolase 15-related YP_674090.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: reu:Reut_A0414 trehalose-phosphatase:HAD-superfamily hydrolase subfamily IIB YP_674091.1 KEGG: mlo:mlr1112 hypothetical protein YP_674092.1 PFAM: peptidase S14, ClpP; KEGG: mlo:mlr0748 ATP-dependent protease proteolytic subunit ClpP-like protein YP_674094.1 PFAM: regulatory protein, ArsR Helix-turn-helix, type 11; KEGG: mlo:mlr0745 transcriptional regulator YP_674095.1 PFAM: major facilitator superfamily MFS_1; KEGG: jan:Jann_0119 major facilitator superfamily MFS_1 YP_674096.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_674097.1 NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate YP_674098.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr0808 3-oxoacyl-[acyl-carrier protein] reductase YP_674099.1 PFAM: metallophosphoesterase; KEGG: mlo:mll0806 hypothetical protein YP_674100.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mlr0803 probable muconate cycloisomerase YP_674101.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS protein of unknown function DUF140; KEGG: mlo:mll0801 putative ABC transport system permease protein YP_674102.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0800 putative ABC transport system ATP-binding protein YP_674103.1 PFAM: Mammalian cell entry related; KEGG: mlo:mll0798 putative ABC transport system substrate-bindin protein YP_674104.1 KEGG: mlo:mll0797 hypothetical protein YP_674105.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein YP_674106.1 PFAM: nitrogen regulatory protein P-II; KEGG: ret:RHE_CH02103 nitrogen regulatory protein P-II YP_674107.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031 YjeF-related protein-like; KEGG: mlo:mlr0346 hypothetical protein YP_674108.1 KEGG: mlo:mll0147 hypothetical protein YP_674109.1 KEGG: mlo:mll0951 hypothetical protein YP_674110.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: mlo:mll0566 tRNA-dihydrouridine synthase A YP_674111.1 TIGRFAM: conserved hypothetical protein; KEGG: bmb:BruAb1_0876 hypothetical protein YP_674112.1 PFAM: protein of unknown function DUF1289; KEGG: mlo:mlr0564 hypothetical protein YP_674113.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: mlo:mll0563 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_674114.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr0562 histidine kinase sensor protein YP_674115.1 PFAM: nuclease (SNase-like); KEGG: mlo:mll0560 succinoglycan biotynthesis protein ExoI YP_674116.1 PFAM: glutathione S-transferase-like; KEGG: mlo:mll0559 glutathione S-transferase YP_674117.1 KEGG: mlo:mll0533 hypothetical protein YP_674118.1 PFAM: protein of unknown function DUF971; KEGG: mlo:mll0540 hypothetical protein YP_674119.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_674120.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr0545 hypothetical protein YP_674121.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: jan:Jann_3375 drug resistance transporter Bcr/CflA subfamily YP_674122.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mlo:mlr0548 molybdopterin-guanine dinucleotide biosynthesis protein B YP_674123.1 PFAM: extracellular solute-binding protein, family 3; SMART: Ionotropic glutamate receptor; KEGG: bms:BR0955 amino acid ABC transporter, periplasmic amino acid-binding protein YP_674124.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0953 amino acid ABC transporter, permease protein YP_674125.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0952 amino acid ABC transporter, permease protein YP_674126.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mlo:mlr0552 3-hydroxyisobutyrate dehydrogenase YP_674127.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mll0557 transcriptional regulator, probable glutamate uptake regulator YP_674128.1 PFAM: cation transporter; KEGG: sme:SMc00937 probable TRK system potassium uptake transmembrane protein YP_674129.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mlo:mll1108 protein-L-isoaspartate O-methyltransferase YP_674130.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mlo:mll1107 outer membrane protein, nodT candidate YP_674131.1 KEGG: mlo:mll1106 hypothetical protein YP_674132.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_674133.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mlo:mll1103 long-chain fatty acid transport protein YP_674135.1 KEGG: sme:SMc00489 hypothetical/unknown signal peptide protein YP_674136.1 KEGG: mlo:mll5712 hypothetical protein YP_674137.1 KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: HC2 PROSITE: ALA_RICH GLU_RICH YP_674138.1 KEGG: sme:SMc04190 conserved hypothetical signal peptide protein YP_674139.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: mlo:mll0427 rare lipoprotein A YP_674140.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 Penicillin-binding protein 5-like; KEGG: mlo:mll0426 penicillin binding protein YP_674141.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_674142.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_674143.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_674144.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease amidohydrolase 2; KEGG: sme:SMc01193 putative deoxyribonuclease YP_674145.1 PFAM: beta-lactamase-like; KEGG: mlo:mll0416 probable hydrolase YP_674146.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_674147.1 PFAM: proline racemase; KEGG: ret:RHE_CH00452 probable proline racemase protein YP_674148.1 KEGG: rsp:RSP_2740 putative glucose/sorbosone dehydrogenase YP_674149.1 KEGG: rsp:RSP_2741 class I diheme cytochrome c4 YP_674150.1 PFAM: regulatory protein, DeoR Helix-turn-helix, type 11; KEGG: mlo:mll0711 glycerol-3-phosphate regulon repressor YP_674151.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane YP_674152.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: mlo:mll0708 ATP-binding protein of sugar ABC transporter YP_674153.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0706 ATP-binding protein of sugar ABC transporter YP_674154.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PB00022 probable sugar ABC transporter, permease protein YP_674155.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll0704 permease protein of sugar ABC transporter YP_674156.1 KEGG: ret:RHE_PB00024 hypothetical protein YP_674157.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc02514 putative multiple sugar transport system substrate-binding protein YP_674158.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mll0700 glycerol kinase YP_674159.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: jan:Jann_3712 transcriptional regulator, AraC family YP_674160.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: bja:bll2645 hypothetical protein YP_674161.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mll7882 hypothetical protein YP_674163.1 KEGG: sco:SCO0366 hypothetical protein YP_674164.1 PFAM: regulatory proteins, IclR; KEGG: bha:BH2137 transcriptional regulator (IclR family) YP_674165.1 KEGG: atc:AGR_L_2598 sugar ABC transporter, periplasmic sugar-binding protein YP_674166.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2595 ribose ABC transporter (permease) YP_674167.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_L_2593 ribose ABC transporter (permease) YP_674168.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_2591 D-ribose transport system ATP-binding protein YP_674169.1 PFAM: aldo/keto reductase; KEGG: bja:blr1124 oxidoreductase YP_674170.1 PFAM: amidohydrolase 2; KEGG: bja:blr1125 hypothetical protein YP_674171.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_674172.1 PFAM: GTP-binding protein, HSR1-related; KEGG: mlo:mlr0403 GTP binding protein-like YP_674173.1 Stimulates the elongation of poly(A) tails YP_674174.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_674175.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_674176.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: mlo:mlr0400 nitrogen assimilation regulatory protein NtrX YP_674177.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like PAS fold; KEGG: mlo:mlr0399 nitrogen regulation protein ntrY YP_674178.1 KEGG: mlo:mlr0398 nitrogen assimilation regulatory protein NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_674179.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold; SMART: PAS; KEGG: mlo:mlr0397 nitrogen reguration protein nirB protein YP_674180.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: mlo:mlr0396 nitrogen reguration protein nifR3 protein YP_674181.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations YP_674182.1 PFAM: CinA-like; KEGG: rpb:RPB_2886 CinA-like YP_674183.1 PFAM: cyclase/dehydrase; KEGG: mlo:mlr0393 hypothetical protein YP_674184.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_674185.1 PFAM: Transglycosylase-associated protein; KEGG: mlo:msr0389 hypothetical protein YP_674186.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_674187.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: sme:SMc01033 probable arylesterase protein YP_674188.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment catalytic domain of components of various dehydrogenase complexes E3 binding; KEGG: mlo:mlr0385 dihydrolipoamide acetyltransferase YP_674189.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_674190.1 PFAM: dehydrogenase, E1 component; KEGG: mlo:mlr0383 pyruvate dehydrogenase E1 alpha subunit YP_674191.1 PFAM: Septum formation initiator; KEGG: mlo:mlr0382 hypothetical protein YP_674192.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_674193.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_674194.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_674195.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: atc:AGR_C_2986 preprotein translocase SecG subunit YP_674196.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_674197.1 KEGG: mlo:mlr0613 peptidyl-prolyl cis-trans isomerse D YP_674198.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_674199.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: bme:BMEI0843 indole-3-glycerol-phosphate synthase YP_674200.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mlo:mlr0616 molybdenum cofactor biosynthesis protein C YP_674201.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: mlo:mlr0617 molybdenum cofactor biosynthesis protein A YP_674202.1 Represses a number of genes involved in the response to DNA damage YP_674203.1 KEGG: lic:LIC11491 putative protein-S-isoprenylcysteine methyltransferase YP_674204.1 PFAM: ComEC/Rec2-related protein; KEGG: mlo:mll0627 DNA uptake protein YP_674205.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_674206.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH YP_674207.1 PFAM: ATP12 ATPase; KEGG: bmb:BruAb1_1008 hypothetical protein YP_674208.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: mlo:mlr0334 ribosomal large subunit pseudouridine synthase C YP_674209.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mlo:mlr0333 crcB protein YP_674210.1 PFAM: AAA ATPase, central region ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: mlo:mlr0329 putative ATPase YP_674211.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: mlo:mlr0328 heat shock protein htrA like YP_674212.1 PFAM: protein of unknown function DUF486; KEGG: mag:amb2194 hypothetical protein YP_674213.1 PFAM: ribosomal protein L17; KEGG: ret:RHE_CH01700 50S ribosomal protein L17 YP_674214.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_674215.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_674216.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_674217.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_674218.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_674219.1 late assembly protein YP_674220.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_674221.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_674222.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: mlo:mlr0313 50S ribosomal protein L18 YP_674223.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_674224.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_674225.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_674226.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_674227.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_674228.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_674229.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_674230.1 one of the stabilizing components for the large ribosomal subunit YP_674231.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_674232.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_674233.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_674234.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: bmb:BruAb1_1234 RpsS, ribosomal protein S19 YP_674235.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_674236.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_674237.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_674238.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_674239.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_674240.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_674241.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_674242.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_674243.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_674245.1 KEGG: sme:SMb20293 hypothetical protein YP_674246.1 TIGRFAM: exodeoxyribonuclease III exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bms:BR0873 exodeoxyribonuclease III YP_674247.1 PFAM: Sel1-like repeat; KEGG: mlo:mll1100 exopolysaccharide regulatory protein ExoR YP_674248.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_674249.1 PFAM: glutathione S-transferase-like; KEGG: bja:bll7859 putative glutathione S-transferase YP_674250.1 PFAM: basic membrane lipoprotein; KEGG: sme:SMc00242 hypothetical signal peptide protein YP_674251.1 PFAM: inner-membrane translocator; KEGG: bme:BMEII0701 ribose transport system permease protein RbsC YP_674252.1 PFAM: inner-membrane translocator; KEGG: bmb:BruAb2_0655 ABC transporter, permease protein YP_674253.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll0504 ATP-binding protein of sugar ABC transporter YP_674254.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mll0505 quinone oxidoreductase YP_674255.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bmb:BruAb2_0652 Pcs, phosphatidylcholine synthase YP_674256.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: mlo:mlr0511 probable 2-octaprenyl-6-methoxyphenol 4-monoxygenase YP_674257.1 TIGRFAM: hemimethylated DNA binding protein; KEGG: mlo:mlr0512 hypothetical protein YP_674258.1 PFAM: Invasion associated locus B; KEGG: mlo:mll0513 hypothetical protein YP_674259.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mlr0514 probable binding protein component of ABC transporter YP_674260.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein YP_674262.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase-like transcription factor CarD TRCF type III restriction enzyme, res subunit DEAD/DEAH box helicase-like; KEGG: mlo:mll0827 transcription repair coupling factor YP_674263.1 PFAM: protein of unknown function DUF339; KEGG: bmb:BruAb2_0644 hypothetical protein YP_674264.1 catalyzes branch migration in Holliday junction intermediates YP_674265.1 PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein YP_674266.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_674267.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_674268.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mlr0215 penicillin-binding protein YP_674269.1 PFAM: cell wall hydrolase/autolysin; KEGG: mlo:mlr0213 N-acetylmuramoyl-L-alanine amidase YP_674271.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1; KEGG: mlo:mll0212 ribonuclease E YP_674272.1 PFAM: peptidase M48, Ste24p Tetratricopeptide TPR_2; KEGG: mlo:mll0209 hypothetical protein YP_674273.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mll0208 outer membrane protein YP_674274.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_674275.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment; KEGG: sme:SMc01344 probable biotin carboxyl carrier protein of acetyl-CoA carboxylase (BCCP) YP_674276.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_674277.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_674278.1 KEGG: mlo:mlr0199 cellulase-like protein YP_674279.1 Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis YP_674280.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_674281.1 KEGG: mlo:mll0189 hypothetical protein YP_674282.1 PFAM: Rhomboid-like protein; KEGG: mlo:mlr0187 hypothetical protein YP_674283.1 KEGG: mlo:mll0186 hypothetical protein YP_674284.1 PFAM: type IV pilus assembly PilZ; KEGG: mlo:mll0185 hypothetical protein YP_674285.1 PFAM: transglutaminase-like cysteine peptidase, BTLCP; KEGG: mlo:mll0183 hypothetical protein YP_674286.1 KEGG: mlo:mlr0180 ferripyochelin binding protein-like YP_674287.1 KEGG: bmb:BruAb1_1264 hypothetical protein YP_674288.1 TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat serine acetyltransferase-like; KEGG: mlo:mlr0175 serine acetyltransferase YP_674289.1 PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: bme:BMEI0464 lipid A-myristate beta-hydroxylase YP_674290.1 PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr0170 hydrolase YP_674291.1 PFAM: protein of unknown function DUF192; KEGG: mlo:mlr0169 hypothetical protein YP_674292.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:mlr0168 cold shock protein YP_674293.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll0167 lactoylglutathione lyase YP_674294.1 PFAM: carboxyl transferase; KEGG: mlo:mll0348 propionyl-CoA carboxylase YP_674296.1 KEGG: mlo:msl1799 hypothetical protein YP_674297.1 KEGG: sme:SMb21599 hypothetical protein YP_674298.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_674299.1 KEGG: mlo:mll0767 sensor kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS YP_674300.1 KEGG: mlo:mlr0769 hypothetical protein YP_674301.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: mlo:mll1446 hypothetical protein YP_674302.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; KEGG: mlo:mll1448 tRNA isopentenyltransferase YP_674303.1 TIGRFAM: phosphoserine phosphatase SerB HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase-like hydrolase; KEGG: mlo:mlr1449 probable phosphoserine phosphatase YP_674304.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr1450 probable acetyltransferase YP_674305.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap PDZ/DHR/GLGF; KEGG: mlo:mll1451 probable serine protease YP_674306.1 KEGG: bmb:BruAb1_1390 hypothetical protein YP_674307.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: mlo:mll1454 ftsH protease activity modulator hflC YP_674308.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: mlo:mll1455 protease subunit hflK YP_674309.1 PFAM: dihydrofolate reductase region; KEGG: bmb:BruAb1_1393 FolA, dihydrofolate reductase YP_674310.1 PFAM: thymidylate synthase; KEGG: bmb:BruAb1_1394 ThyA, thymidylate synthase YP_674311.1 KEGG: mlo:mll1468 hypothetical protein YP_674312.1 KEGG: bma:BMA3011 hypothetical protein YP_674313.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr7932 ABC transporter, ATP-binding component YP_674314.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_674315.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_674316.1 PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7866 hypothetical protein YP_674317.1 PFAM: permease YjgP/YjgQ; KEGG: mlo:mll7865 hypothetical protein YP_674318.1 PFAM: OstA-like protein Organic solvent tolerance protein; KEGG: mlo:mll7864 unknown protein YP_674319.1 KEGG: mlo:mll7863 putative survival protein surA precursor (peptidyl-prolyl cis-trans isomerase SurA) YP_674320.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate) YP_674321.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_674322.1 Essential for recycling GMP and indirectly, cGMP YP_674323.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC-like-like Domain of unknown function DUF1732; KEGG: mlo:mlr7856 hypothetical protein YP_674324.1 PFAM: aminodeoxychorismate lyase; KEGG: sme:SMc00575 hypothetical protein YP_674325.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_674326.1 carries the fatty acid chain in fatty acid biosynthesis YP_674327.1 catalyzes the formation of 3-hydroxyacyl-ACP from 3-keto-acyl-ACP; in the rhizobia this protein interacts with NodF to allow for the synthesis of highly polyunsaturated fatty acids necessary for nodulation YP_674328.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase region; KEGG: mlo:mlr7849 malonyl CoA-acyl carrier protein transacylase YP_674329.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_674330.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: mlo:mll0838 c-type cytochrome biogenesis protein YP_674331.1 catalyzes the phosphorylation of NAD to NADP YP_674332.1 PFAM: helicase-like DEAD/DEAH box helicase-like; KEGG: mlo:mll0224 probable ATP-dependent RNA helicase YP_674333.1 PFAM: TfoX-like; KEGG: mlo:mlr0026 hypothetical protein YP_674334.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: mlo:mll0025 hypothetical protein YP_674335.1 TIGRFAM: iron-sulfur cluster assembly accessory protein FeS assembly scaffold SufA; PFAM: HesB/YadR/YfhF; KEGG: mlo:mlr0024 HesB-like protein YP_674336.1 PFAM: protein of unknown function DUF59; KEGG: bms:BR0935 hypothetical protein YP_674337.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V aromatic amino acid beta-eliminating lyase/threonine aldolase aminotransferase, class I and II; KEGG: mlo:mlr0021 nifS-like aminotransferase YP_674338.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD; KEGG: mlo:mlr0020 hypothetical protein YP_674339.1 KEGG: mlo:mlr0019 ABC transporter ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: ATPase YP_674340.1 with SufCD activates cysteine desulfurase SufS YP_674341.1 PFAM: aminotransferase, class V; KEGG: mlo:mlr0015 nitrogenase cofactor synthesis protein nifS YP_674342.1 KEGG: mlo:mll0014 hypothetical protein YP_674343.1 PFAM: protein of unknown function DUF1508; KEGG: ret:RHE_CH03509 hypothetical protein YP_674344.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: sme:SMc00526 tyrosyl-tRNA synthetase YP_674345.1 KEGG: mlo:mlr0006 hypothetical protein YP_674346.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: mlo:mll0004 bacterioferritin YP_674347.1 PFAM: peptidase M23B; KEGG: mlo:mll8577 hypothetical protein YP_674348.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2429 probable transporter YP_674349.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_674350.1 PFAM: protein of unknown function DUF1127; KEGG: mlo:msr1062 hypothetical protein YP_674351.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_674352.1 KEGG: pmu:PM1469 unknown YP_674353.1 PFAM: Squalene/phytoene synthase; KEGG: mlo:mll1068 phytoene synthase YP_674354.1 PFAM: protein of unknown function DUF498; KEGG: ret:RHE_CH01833 hypothetical protein YP_674355.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_674356.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC; KEGG: mlo:mll1072 preprotein translocase YajC subunit YP_674357.1 KEGG: mmu:239611 mucin 19 YP_674358.1 PFAM: protein of unknown function DUF815; KEGG: mlo:mlr1073 hypothetical protein YP_674359.1 PFAM: Peptidoglycan-binding LysM peptidase M23B; KEGG: bmb:BruAb1_0900 peptidase, M23/M37 family YP_674360.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins YP_674361.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_674362.1 TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S) seryl-tRNA synthetase, class IIa; KEGG: bmb:BruAb1_0897 SerS, seryl-tRNA synthetase YP_674363.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: mlo:mll1082 probable sec-independent protein translocase component YP_674364.1 mediates the export of protein precursors bearing twin-arginine signal peptides YP_674365.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_674366.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc02068 putative ABC transporter ATP-binding protein YP_674367.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: mlo:mll1087 putative segregation and condensation protein B YP_674368.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: mlo:mll1088 putative segregation and condensation protein A YP_674369.1 PFAM: glycoside hydrolase, family 3-like; KEGG: mlo:mll1089 probable sugar hydrolase YP_674370.1 PFAM: beta-lactamase; KEGG: sme:SMb20965 putative exported enzyme, similar to 6-aminohexanoate-dimer hydrolase protein YP_674371.1 PFAM: Sporulation related; KEGG: bme:BMEI1088 soluble lytic murein transglycosylase YP_674372.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_674373.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_674374.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF; KEGG: mlo:mlr1094 hypothetical protein YP_674376.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_674377.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_674378.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_674379.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_674380.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_674381.1 binds directly to 23S ribosomal RNA YP_674382.1 Modulates Rho-dependent transcription termination YP_674383.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_674384.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_674385.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: rru:Rru_A2869 exopolysaccharide synthesis, ExoD YP_674386.1 PFAM: FAD dependent oxidoreductase; KEGG: bcl:ABC0532 glycine/D-amino acid oxidase YP_674387.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: bja:bll6810 transcriptional regulatory protein YP_674388.1 PFAM: NADPH-dependent FMN reductase; KEGG: bbr:BB0642 NADPH-dependent FMN reductase YP_674389.1 KEGG: sme:SMa2101 probable nitrilotriacetate monooxygenase component A YP_674390.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: sma:SAV3045 putative ABC transporter ATP-binding protein YP_674391.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1631 ABC transporter, permease protein YP_674392.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1632 putative ABC transporter permease YP_674393.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sma:SAV874 putative solute-binding dependent transport lipoprotein YP_674394.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:bll7189 hypothetical protein YP_674395.1 PFAM: HI0933-like protein FAD dependent oxidoreductase BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0992 probable pyridine nucleotide-disulphide oxidoreductase YP_674396.1 KEGG: bja:bsl7192 putative sarcosine oxidase alpha subunit YP_674397.1 PFAM: FAD dependent oxidoreductase; KEGG: bbr:BB0994 probable FAD dependent oxidoreductase YP_674398.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mlo:mlr5680 DNA-damage-inducible protein YP_674399.1 PFAM: regulatory proteins, IclR; KEGG: bja:blr3160 transcriptional regulatory protein YP_674400.1 PFAM: amidohydrolase 2; KEGG: bbr:BB4693 hypothetical protein YP_674401.1 PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc0507 probable amino acid dehydrogenase transmembrane protein YP_674402.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: rpb:RPB_4417 protein of unknown function DUF112, transmembrane YP_674404.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4598 uncharacterized protein UPF0065 YP_674405.1 PFAM: peptidase M19, renal dipeptidase; KEGG: bte:BTH_II1867 renal dipeptidase family protein YP_674406.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:bll6415 transcriptional regulatory protein YP_674407.1 PFAM: protein of unknown function DUF917; KEGG: mlo:mll9130 hypothetical protein YP_674408.1 PFAM: protein of unknown function DUF917; KEGG: atc:AGR_L_3528 hypothetical protein YP_674409.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: atc:AGR_L_3530 hypothetical protein YP_674410.1 PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_PC00012 probable NAD(P)H-dependent FMN reductase protein YP_674411.1 KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit YP_674412.1 PFAM: regulatory protein, LuxR Sigma-70, region 4 type 2; KEGG: mta:Moth_0212 AroM YP_674413.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: atc:AGR_L_3525 putative hemin-binding lipoprotein YP_674414.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9135 Dipeptide transport system permease protein YP_674415.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll9134 Dipeptide transport system permease protein YP_674416.1 KEGG: rpb:RPB_0234 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_674417.1 KEGG: chy:CHY_2360 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_674418.1 KEGG: nph:NP0414A hypothetical protein YP_674419.1 PFAM: FAD dependent oxidoreductase; KEGG: syn:sll1085 glycerol-3-phosphate dehydrogenase YP_674420.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ppu:PP0414 polyamine ABC transporter, permease protein YP_674421.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1234 motC YP_674422.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: bja:bll3241 ABC transporter ATP-binding protein YP_674423.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bja:bll6825 ABC transporter substrate-binding protein YP_674424.1 PFAM: FAD dependent oxidoreductase; KEGG: pfl:PFL_3591 D-amino acid dehydrogenase, small subunit family protein YP_674425.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfo:Pfl_3228 regulatory protein GntR, HTH YP_674426.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: sme:SMc01582 putative alcohol dehydrogenase protein YP_674427.1 PFAM: aldehyde dehydrogenase; KEGG: sme:SMc01588 putative aldehyde dehydrogenase protein YP_674428.1 PFAM: glutamine synthetase, catalytic region; KEGG: sme:SMc01594 probable glutamine synthetase YP_674429.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sme:SMc01600 hypothetical protein YP_674430.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: sme:SMc01602 hypothetical protein YP_674431.1 PFAM: zinc/iron permease; KEGG: sme:SMb20011 zinc transporter, ZIP family YP_674432.1 KEGG: bms:BR2146 lipoprotein, putative YP_674433.1 PFAM: protein of unknown function DUF1003; KEGG: ret:RHE_PF00138 hypothetical protein YP_674434.1 PFAM: manganese containing catalase; KEGG: ana:alr0998 putative catalase YP_674435.1 KEGG: cjr:CJE1298 hypothetical protein YP_674436.1 KEGG: mlo:mll1959 hypothetical protein YP_674437.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: mlo:mll4073 cell division protein FtsK YP_674439.1 KEGG: atc:AGR_C_4452 hypothetical protein YP_674441.1 PFAM: phage minor tail; KEGG: ssn:SSO_2416 putative minor tail protein YP_674442.1 KEGG: rsp:RSP_2351 hypothetical protein YP_674443.1 PFAM: phage Terminase; KEGG: nwi:Nwi_1472 phage terminase YP_674444.1 TIGRFAM: phage head-tail adaptor, putative; KEGG: nwi:Nwi_1619 phage head-tail adaptor, putative YP_674445.1 KEGG: nwi:Nwi_1620 hypothetical protein YP_674446.1 TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40-like; KEGG: nwi:Nwi_1621 phage protein, HK97, GP10 YP_674447.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: nwi:Nwi_1478 uncharacterized phage protein (possible DNA packaging) YP_674450.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_2355 HNH nuclease / probable phage PHI-105 holin-like protein YP_674451.1 KEGG: rsp:RSP_2357 hypothetical protein YP_674452.1 KEGG: nar:Saro_0657 hypothetical protein YP_674453.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: rsp:RSP_2358 possible phage phi-C31 GP36-like protein / major capsid protein, HK97 family YP_674454.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rpa:RPA1887 possible phage protease, R. capsulatus GTA orfg4 homologue YP_674455.1 KEGG: rsp:RSP_2359 hypothetical protein YP_674456.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rsp:RSP_2360 putative head portal protein, HK97 family YP_674460.1 PFAM: phage integrase; KEGG: jan:Jann_1997 phage integrase YP_674461.1 KEGG: mlo:msl1110 hypothetical protein YP_674462.1 KEGG: ret:RHE_PE00024 probable two-component sensor histidine kinase/response regulator hybrid protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-3 PAS fold-4 PAS fold; SMART: PAS PAC motif YP_674463.1 PFAM: cytochrome c, class I; KEGG: sme:SMb20402 putative alcohol dehydrogenase cytochrome c subunit precursor protein YP_674464.1 PFAM: ferredoxin [2Fe-2S]-binding; KEGG: sme:SMb20403 putative oxidoreductase subunit protein YP_674465.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: sme:SMb20404 putative aldehyde dehydrogenase protein YP_674467.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:msl9578 cold shock protein YP_674468.1 PFAM: protein of unknown function DUF982; KEGG: mlo:msr8381 hypothetical protein YP_674469.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: rpa:RPA3508 ATP-binding component of ABC transporter YP_674470.1 PFAM: ABC-2 type transporter; KEGG: eba:ebA6231 ABC transporter permease protein YP_674471.1 KEGG: mlo:mll5389 hypothetical protein YP_674472.1 KEGG: mlo:mll5388 hypothetical protein YP_674473.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: ade:Adeh_2439 methyltransferase type 11 YP_674474.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_674475.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_674476.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_674477.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr8233 efflux pump protein FarB YP_674478.1 PFAM: secretion protein HlyD; KEGG: mlo:mlr8231 efflux pump protein FarA YP_674479.1 PFAM: regulatory protein, MarR; KEGG: mlo:mlr8230 transcriptional regulator YP_674480.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_674481.1 PFAM: aminotransferase, class I and II; KEGG: mlo:mll0935 probable aminotransferase YP_674483.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold Poly-beta-hydroxybutyrate polymerase-like; KEGG: mlo:mlr0937 poly-beta-hydroxybutyrate synthase YP_674484.1 PFAM: protein of unknown function DUF882 Peptidase M15A; KEGG: mlo:mlr0938 hypothetical protein YP_674486.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_674487.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC1167 transcriptional regulator YP_674488.1 PFAM: Endoribonuclease L-PSP; KEGG: bja:bll7189 hypothetical protein YP_674489.1 PFAM: BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0992 probable pyridine nucleotide-disulphide oxidoreductase YP_674490.1 KEGG: bja:bsl7192 putative sarcosine oxidase alpha subunit YP_674491.1 PFAM: FAD dependent oxidoreductase; KEGG: bja:bll7193 opine oxidase subunit B YP_674492.1 PFAM: CoA-binding; KEGG: eba:ebA5611 organic acid-CoA ligase (ADP forming),similar to feruloyl-CoA synthetase YP_674493.1 KEGG: bmb:BruAb2_0854 hypothetical spermidine/putrescine ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase YP_674494.1 KEGG: pae:PA0222 putative spermidine/putrescine transport system substrate-binding protein YP_674495.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll6253 ABC transporter permease protein YP_674496.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB1124 enoyl-CoA hydratase YP_674497.1 PFAM: thioesterase superfamily; KEGG: gka:GK1870 hypothetical protein YP_674498.1 PFAM: MaoC-like dehydratase; KEGG: mag:amb0831 acyl dehydratase YP_674500.1 PFAM: response regulator receiver GAF ATP-binding region, ATPase-like histidine kinase A-like; KEGG: ppu:PP3761 sensor histidine kinase/response regulator YP_674501.1 PFAM: MCP methyltransferase, CheR-type; KEGG: xcb:XC_3058 chemotaxis protein YP_674502.1 KEGG: bja:bll2598 two-component response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver HWE histidine kinase PAS fold-3 PAS fold-4; SMART: PAS YP_674503.1 PFAM: amidohydrolase 2; KEGG: atc:AGR_L_3341 hypothetical protein YP_674504.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_3340 hypothetical protein YP_674505.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate YP_674506.1 PFAM: regulatory protein GntR, HTH GntR-like Helix-turn-helix, type 11; KEGG: atc:AGR_L_3331 hypothetical protein YP_674507.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMa1438 putative ABC transporter, periplasmic solute-binding protein YP_674508.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sme:SMa1438 putative ABC transporter, periplasmic solute-binding protein YP_674509.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa1437 probable ABC transporter permease YP_674510.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb20142 putative oligopeptide ABC transporter permease protein YP_674511.1 KEGG: sma:SAV3146 putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_674512.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20141 putative oligopeptide ABC transporter ATP-binding protein YP_674513.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: atc:AGR_C_2588 hypothetical protein YP_674514.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: atc:AGR_L_2751 hypothetical protein YP_674515.1 PFAM: oxidoreductase-like Oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: rba:RB6199 dehydrogenase homolog YP_674516.1 PFAM: aldehyde dehydrogenase; KEGG: bms:BR0210 aldehyde dehydrogenase family protein YP_674517.1 KEGG: bja:bsl6676 hypothetical protein YP_674518.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll2989 oxidoreductase YP_674519.1 PFAM: putative ammonia monooxygenase; KEGG: mlo:mlr2782 hypothetical protein YP_674520.1 KEGG: spn:SP1772 cell wall surface anchor family protein YP_674521.1 KEGG: mlo:mlr7968 hypothetical protein YP_674522.1 PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr7966 putative permease YP_674523.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mlo:mlr7964 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_674524.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_674525.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase-like; KEGG: mlo:mll7961 phosphoribosylglycinamide formyltransferase YP_674526.1 PFAM: peptidase S10, serine carboxypeptidase; KEGG: rpb:RPB_0440 peptidase S10, serine carboxypeptidase YP_674527.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: bmb:BruAb1_0726 oxidoreductase, molybdopterin-binding, hypothetical YP_674528.1 PFAM: protein of unknown function DUF519; KEGG: mlo:mlr7888 hypothetical protein YP_674529.1 KEGG: mlo:mlr7894 hypothetical protein YP_674530.1 PFAM: ribonuclease T2; KEGG: bms:BR0703 ribonuclease T2 family protein YP_674531.1 PFAM: OmpA-like transmembrane region; KEGG: mlo:mll7908 outer membrane protein YP_674532.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr7910 short chain dehydrogenase YP_674533.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_674534.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mlo:mlr7913 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase YP_674535.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS; KEGG: mlo:msr7914 molybdopterin converting factor, subunit 1 YP_674536.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2 YP_674537.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_674538.1 PFAM: DinB; KEGG: mlo:mlr7920 hypothetical protein YP_674539.1 PFAM: regulatory protein, TetR; KEGG: mlo:mlr1472 probable transcriptional regulator YP_674540.1 PFAM: protein of unknown function DUF1321; KEGG: mlo:mlr1474 hypothetical protein YP_674541.1 KEGG: mlo:msr1476 hypothetical protein YP_674542.1 PFAM: AsmA; KEGG: mlo:mll1482 hypothetical protein YP_674543.1 PFAM: FAD linked oxidase-like; KEGG: mlo:mll1488 probable D-lactate dehydrogenase YP_674544.1 KEGG: mlo:msr1490 hypothetical protein YP_674545.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dienelactone hydrolase; KEGG: sme:SMc00817 putative carboxymethylenebutenolidase (dienelactone hydrolase) protein YP_674546.1 PFAM: UvrD/REP helicase; KEGG: bms:BR1413 DNA helicase II YP_674548.1 KEGG: mlo:mlr4942 hypothetical protein YP_674549.1 KEGG: bmb:BruAb1_1410 antibiotic acetyltransferase YP_674550.1 PFAM: electron transport protein SCO1/SenC; KEGG: mlo:mlr1532 inner mitochondrial membrane protein Sco1p YP_674551.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_674552.1 PFAM: peptidase M24; KEGG: mlo:mlr1535 aminopeptidase P YP_674553.1 PFAM: branched-chain amino acid transport; KEGG: mlo:msl1536 hypothetical protein YP_674554.1 PFAM: AzlC-like; KEGG: mlo:mll1537 hypothetical protein YP_674555.1 TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT NAD-dependent DNA ligase NAD-dependent DNA ligase, OB-fold; KEGG: bja:bll6591 DNA ligase YP_674556.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC protein-like; KEGG: mlo:mll1541 DNA repair protein RecN YP_674557.1 KEGG: mlo:mll1543 putative lipoprotein YP_674558.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_674559.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_674560.1 PFAM: cell division protein FtsA; KEGG: mlo:mll1549 cell division protein FtsA YP_674561.1 PFAM: cell division protein FtsQ Polypeptide-transport-associated, FtsQ-type; KEGG: mlo:mll1550 cell division protein FtsQ YP_674562.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_674563.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_674564.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_674565.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_674566.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mlo:mll1555 cell division protein YP_674567.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_674568.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_674569.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase-like cytoplasmic peptidoglycan synthetases-like Mur ligase, middle region; KEGG: mlo:mll1559 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_674570.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_674571.1 PFAM: penicillin-binding protein, transpeptidase Penicillin-binding protein, dimerisation domain; KEGG: mlo:mll1561 penicillin-binding protein YP_674572.1 KEGG: mlo:mll1563 hypothetical protein YP_674573.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: atc:AGR_C_3815 S-adenosyl-methyltransferase YP_674574.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_674575.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mlo:mll1569 probable transglycosylase YP_674576.1 PFAM: Peptidoglycan-binding domain 1 N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: mlo:mll1570 N-acetylmuramoyl-L-alanine amidase YP_674577.1 PFAM: heat shock protein DnaJ-like protein of unknown function DUF1332; KEGG: bms:BR1445 DnaJ domain protein YP_674578.1 PFAM: Hydantoinase/oxoprolinase Hydantoinase B/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: mlo:mlr1573 5-oxoprolinase YP_674579.1 KEGG: mlo:mlr1574 hypothetical protein YP_674580.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein YP_674582.1 PFAM: beta-lactamase; KEGG: ret:RHE_CH02865 putative 6-aminohexanoate-dimer hydrolase protein YP_674583.1 PFAM: glycoside hydrolase, family 25; KEGG: bmb:BruAb1_1442 glycosyl hydrolase, family 25 YP_674584.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: mlo:mlr1581 probable transglycolase YP_674585.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll1584 ornithine decarboxylase YP_674586.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: mlo:mll1587 5,10-methylenetetrahydrofolate reductase YP_674587.1 PFAM: regulatory protein, ArsR UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: mlo:mll1589 transcriptional regulator YP_674588.1 KEGG: mlo:mlr1592 hypothetical protein YP_674589.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_674590.1 SMART: Response regulator receiver; KEGG: ccr:CC3015 response regulator YP_674591.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_674592.1 PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr1612 hypothetical protein YP_674593.1 PFAM: CBS domain containing protein; KEGG: ret:RHE_CH02435 putative inosine-5'-monophosphate dehydrogenase protein YP_674594.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mlo:mlr1614 hypothetical protein YP_674595.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit YP_674596.1 KEGG: mba:Mbar_A2719 hypothetical protein YP_674597.1 KEGG: rpa:RPA1889 hypothetical protein YP_674598.1 KEGG: rpa:RPA1889 hypothetical protein YP_674599.1 PFAM: regulatory protein, TetR Tetracycline transcriptional regulator YcdC-like-like; KEGG: mlo:mlr1634 probable transcriptional regulator YP_674600.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_674601.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_674602.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc01823 putative ATP-binding ABC transporter protein YP_674603.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01825 putative permease ABC transporter protein YP_674604.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01826 putative permease ABC transporter protein YP_674605.1 KEGG: sme:SMc01827 hypothetical protein YP_674606.1 PFAM: helix-turn-helix, AraC type; KEGG: ret:RHE_CH03443 transcriptional regulator protein, AraC family YP_674607.1 TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase; KEGG: sme:SMb20578 putative gamma carboxymuconolactone decarboxylase protein YP_674608.1 TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: sme:SMb20577 protocatechuate 3,4-dioxygenase, beta subunit YP_674609.1 TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bmb:BruAb2_0580 protocatechuate 3,4-dioxygenase, alpha subunit YP_674610.1 Catalyzes the cycloisomerization of cis,cis-muconate YP_674611.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mll1641 hypothetical protein YP_674612.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074 Helix-turn-helix, type 11; KEGG: mlo:mll1642 probable transcriptional regulator YP_674613.1 catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines YP_674614.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_674615.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_674616.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1649 hypothetical protein YP_674617.1 KEGG: mlo:mll1656 ATP-binding protein of dipeptide ABC transporter; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_674618.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll1657 permease protein of dipeptide ABC transporter YP_674619.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll1659 permease protein of oligopeptide ABC transporter YP_674620.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll1660 dipeptide binding protein component of ABC transporter YP_674621.1 PFAM: TonB-dependent receptor TonB-dependent receptor, plug; KEGG: rsp:RSP_2402 putative TonB dependent vitamin B12 outer membrane receptor YP_674622.1 PFAM: periplasmic binding protein; KEGG: bms:BR1346 iron compound ABC transporter, periplasmic iron compound-binding protein YP_674623.1 PFAM: transport system permease protein; KEGG: rsp:RSP_2404 ABC cobalamin/Fe3+-siderophore transporter, inner membrane subunit YP_674624.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: rru:Rru_A0491 ABC transporter component YP_674625.1 TIGRFAM: TonB family protein; KEGG: psb:Psyr_0203 TonB, C-terminal YP_674626.1 KEGG: mlo:mlr4759 hypothetical protein YP_674627.1 PFAM: OmpA/MotB; KEGG: mlo:mlr2412 hypothetical protein YP_674628.1 PFAM: protein of unknown function UPF0153; KEGG: mlo:mll2411 hypothetical protein YP_674629.1 PFAM: protein of unknown function DUF1486; KEGG: jan:Jann_2875 hypothetical protein YP_674630.1 KEGG: mlo:mll2410 hypothetical protein YP_674631.1 PFAM: protein of unknown function DUF541; KEGG: mlo:mlr2408 hypothetical protein YP_674632.1 PFAM: protein of unknown function DUF983; KEGG: ret:RHE_CH01276 hypothetical protein YP_674633.1 PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr4869 hypothetical protein YP_674634.1 PFAM: Rhodanese-like; KEGG: rpa:RPA4457 putative sulfide dehydrogenase YP_674635.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: sme:SMa1243 Azu1 pseudoazurin (blue copper protein) YP_674636.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2598 ABC transporter, inner membrane subunit YP_674637.1 KEGG: rsp:RSP_2597 ABC transporter, periplasmic substrate-binding protein YP_674638.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: rsp:RSP_2596 ABC transporter, ATPase subunit YP_674639.1 PFAM: Citrate transporter TrkA-C; KEGG: bmb:BruAb2_0567 transporter, TrkA family YP_674640.1 PFAM: GatB/Yqey; KEGG: sme:SMc01568 hypothetical protein YP_674641.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_674642.1 KEGG: mlo:mlr7847 hypothetical protein YP_674643.1 KEGG: ret:RHE_CH03836 hypothetical protein YP_674644.1 PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: sme:SMc01213 hypothetical transmembrane protein YP_674645.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: ppu:PP1987 methlytransferase, UbiE/COQ5 family YP_674646.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: atc:AGR_C_3674 hypothetical protein YP_674647.1 SMART: regulatory protein, ArsR; KEGG: atc:AGR_C_3675 hypothetical protein YP_674648.1 PFAM: Acyl-CoA dehydrogenase, type 2-like; KEGG: nfa:nfa24970 putative acyl-CoA dehydrogenase YP_674649.1 PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr1855 hypothetical protein YP_674650.1 PFAM: regulatory protein, ArsR; KEGG: sme:SMb21169 putative transcriptional regulator, ArsR family protein YP_674651.1 PFAM: MltA-interacting MipA; KEGG: ret:RHE_CH00894 hypothetical conserved membrane protein YP_674652.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_674654.1 PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_1229 protein of unknown function DUF559 YP_674655.1 PFAM: Cupin 2, conserved barrel; KEGG: bme:BMEII0800 transcriptional regulator YP_674656.1 KEGG: nmu:Nmul_A0833 hypothetical protein YP_674657.1 PFAM: ABC-2 type transporter; KEGG: ade:Adeh_3916 ABC transporter, inner membrane subunit YP_674658.1 KEGG: bcl:ABC1480 multidrug ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: ATPase YP_674659.1 TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin Autotransporter beta-domain; KEGG: psb:Psyr_3733 outer membrane autotransporter barrel YP_674660.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bmb:BruAb1_0067 transglycosylase SLT domain protein YP_674661.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: mlo:mlr2526 methylated-DNA-protein-cystein methyltransferase YP_674663.1 PFAM: EAL; KEGG: mlo:mll2537 hypothetical protein YP_674664.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_674665.1 PFAM: amidinotransferase; KEGG: efa:EF2972 amidinotransferase family protein YP_674666.1 PFAM: GCN5-related N-acetyltransferase regulatory protein, MarR; KEGG: mlo:mlr8209 hypothetical protein YP_674667.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_674668.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll2551 probable transcriptional regulator YP_674669.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mll2552 thioredoxin reductase YP_674670.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr2554 probable transcriptional regulator YP_674671.1 PFAM: glycosyl transferase, family 25; KEGG: bmb:BruAb1_1592 glycosyl transferase, family 25 YP_674672.1 KEGG: ath:At1g64980 expressed protein YP_674673.1 PFAM: glycosyl transferase, family 25; KEGG: bms:BR0321 glycosyl transferase, family 25 YP_674674.1 PFAM: glycosyl transferase, group 1; KEGG: bmb:BruAb1_1496 LpcC, lipopolysaccharide core biosynthesis mannosyltransferase YP_674675.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_674676.1 KEGG: bmb:BruAb2_0556 hypothetical protein YP_674677.1 PFAM: Extensin-like-like; KEGG: mlo:mlr2573 hypothetical protein YP_674678.1 PFAM: Extensin-like-like; KEGG: bmb:BruAb1_1501 hypothetical protein YP_674679.1 PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: mlo:mlr2581 hemolysin YP_674680.1 PFAM: NADPH-dependent FMN reductase; KEGG: mlo:mll2599 probable reductase YP_674681.1 PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr2600 hypothetical protein YP_674682.1 PFAM: thioesterase superfamily; KEGG: sme:SMc04228 putative acyl-CoA thioester hydrolase YP_674683.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase Male sterility-like; KEGG: sme:SMc03963 sulfolipid biosynthesis protein YP_674684.1 PFAM: glycosyl transferase, family 8; KEGG: ret:RHE_CH03469 glycosyltransferase (sulfolipid biosynthesis) protein YP_674685.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: ret:RHE_CH03468 sulfolipid (UDP-sulfoquinovose) biosynthesis protein YP_674687.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_674688.1 KEGG: atc:AGR_L_425 hypothetical protein YP_674689.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_674691.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: mlo:msr2657 probable cold shock protein YP_674692.1 PFAM: Cold-shock protein, DNA-binding Ribonuclease B, OB region-like; SMART: Cold shock protein; KEGG: mlo:msr2658 probable cold shock protein YP_674693.1 KEGG: atc:AGR_L_3047 hypothetical protein YP_674694.1 KEGG: sme:SMc01586 hypothetical protein YP_674695.1 PFAM: beta-lactamase-like; KEGG: mlo:mll2661 probable hydrolase YP_674696.1 KEGG: mlo:mll2663 hypothetical protein YP_674697.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_674698.1 PFAM: regulatory protein, MarR; KEGG: mlo:mlr2665 probable transcriptional regulator YP_674699.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mlr2666 transcriptional regulator YP_674700.1 PFAM: SPW repeat; KEGG: ret:RHE_CH01246 hypothetical protein YP_674701.1 PFAM: protein of unknown function DUF982; KEGG: atu:Atu5053 hypothetical protein YP_674702.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mlr2667 probable two-component sensor YP_674704.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding region; KEGG: sme:SMc04456 putative chaperone protein YP_674705.1 KEGG: mlo:mll2674 hypothetical protein YP_674706.1 PFAM: protein of unknown function DUF526; KEGG: mlo:mll2675 hypothetical protein YP_674707.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_674708.1 PFAM: protein of unknown function DUF185; KEGG: mlo:mlr2680 hypothetical protein YP_674709.1 PFAM: protein of unknown function DUF152; KEGG: mlo:mlr2681 hypothetical protein YP_674710.1 PFAM: peptidase M24; KEGG: mlo:mlr2682 probable hydrolase/peptidase YP_674711.1 KEGG: sme:SMc02685 hypothetical protein YP_674712.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_674713.1 KEGG: ade:Adeh_2908 hypothetical protein YP_674714.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_674715.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_674716.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_674717.1 PFAM: MaoC-like dehydratase; KEGG: mlo:mlr2698 hypothetical protein YP_674718.1 PFAM: MaoC-like dehydratase; KEGG: mlo:mlr2699 hypothetical protein YP_674719.1 PFAM: Citrate transporter TrkA-C; KEGG: jan:Jann_3381 TrkA-like YP_674720.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_674721.1 PFAM: cytochrome c1; KEGG: mlo:mll2705 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_674722.1 PFAM: cytochrome b/b6-like; KEGG: mlo:mll2706 ubiquinol-cytochrome c reductase cytochrome b subunit YP_674723.1 TIGRFAM: Twin-arginine translocation pathway signal ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] region; KEGG: sme:SMc00187 ubiquinol-cytochrome c reductase iron-sulfur subunit YP_674724.1 KEGG: sme:SMc00337 hypothetical/unknown protein YP_674725.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ppr:PBPRB1092 conserved hypothetical protein YP_674726.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_674727.1 KEGG: mlo:mll2721 hypothetical protein YP_674728.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sme:SMc00184 putative tRNA/rRNA methyltransferase protein YP_674730.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll2715 ATP-binding protein of ABC transporter YP_674731.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc00186 putative ABC transporter ATP-binding transmembrane protein YP_674732.1 KEGG: mlo:msr2723 hypothetical protein YP_674733.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: mlo:mll2726 tRNA nucleotidyltransferase (CCA-adding enzyme) YP_674734.1 PFAM: NUDIX hydrolase; KEGG: mlo:mll2727 hypothetical protein YP_674735.1 PFAM: protein of unknown function DUF1285; KEGG: mlo:mll2728 hypothetical protein YP_674736.1 PFAM: ATPase associated with various cellular activities, AAA_3 ATPase associated with various cellular activities, AAA_5; KEGG: mlo:mlr2730 probable regulatory protein YP_674737.1 KEGG: mlo:mlr2732 hypothetical protein YP_674738.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: mlo:mlr2734 hypothetical protein YP_674739.1 PFAM: protein of unknown function DUF1355; KEGG: mlo:mlr2735 hypothetical protein YP_674740.1 KEGG: rba:RB3641 conserved hypothetical protein-putative cycloisomerase YP_674741.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr2800 hypothetical protein YP_674742.1 KEGG: mlo:mll2799 putative glutathione S-transferase YP_674743.1 PFAM: NUDIX hydrolase; KEGG: bmb:BruAb1_1552 MutT/nudix family protein YP_674744.1 PFAM: metallophosphoesterase; KEGG: mlo:mll2796 hypothetical protein YP_674746.1 KEGG: mlo:mlr2795 hypothetical protein YP_674747.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase LeuA allosteric (dimerisation) domain; KEGG: mlo:mlr2792 2-isopropylmalate synthase YP_674748.1 PFAM: regulatory protein, ArsR; KEGG: sme:SMb20608 putative transcriptional regulator, ArsR family protein YP_674749.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sme:SMb20607 hypothetical protein YP_674750.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: sme:SMb20606 hypothetical protein YP_674751.1 PFAM: helix-turn-helix, HxlR type; KEGG: mlo:mlr3777 hypothetical protein YP_674752.1 PFAM: alpha/beta hydrolase fold; KEGG: sme:SMa1327 putative hydrolase YP_674753.1 PFAM: bifunctional deaminase-reductase-like; KEGG: ret:RHE_CH00552 putative pyrimidine reductase protein (dihydrofolate reductase family) YP_674754.1 PFAM: DGPFAETKE; KEGG: rpb:RPB_1804 DGPF protein YP_674755.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bmb:BruAb1_1557 cation efflux family protein YP_674756.1 trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II YP_674757.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: rsp:RSP_0119 PA-phosphatase related phosphoesterase YP_674758.1 PFAM: CBS domain containing protein peptidase M50; KEGG: sme:SMb20925 hypothetical protein YP_674759.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation YP_674760.1 KEGG: mlo:mll3993 nucleoside diphosphate kinase regulator, Rnk YP_674761.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_674762.1 KEGG: mlo:mlr2761 hypothetical protein YP_674763.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pae:PA4170 hypothetical protein YP_674764.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mlo:mlr2805 hypothetical protein YP_674765.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: mlo:mlr2808 tRNA/rRNA methyltransferase YP_674766.1 KEGG: mlo:mll2809 hypothetical protein YP_674767.1 PFAM: Uncharacterised conserved protein UCP033924; KEGG: mlo:mll2811 hypothetical protein YP_674768.1 KEGG: mlo:mlr2813 hypothetical protein YP_674769.1 PFAM: response regulator receiver; KEGG: mlo:mlr2815 two-component response regulator YP_674770.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mll2816 two-component transcriptional regulator YP_674771.1 KEGG: mlo:mlr2817 hypothetical protein YP_674772.1 PFAM: beta-lactamase; KEGG: sme:SMc00047 putative beta-lactamase signal peptide protein YP_674773.1 PFAM: protein of unknown function DUF1153; KEGG: mlo:msl2821 hypothetical protein YP_674774.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_674775.1 PFAM: Semialdehyde dehydrogenase, NAD - binding oxidoreductase-like Oxidoreductase-like; KEGG: mlo:mll2825 probable oxidoreductase YP_674776.1 PFAM: Resolvase-like Recombinase; KEGG: bja:blr6992 hypothetical protein YP_674777.1 transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes YP_674778.1 KEGG: nwi:Nwi_1027 response regulator receiver YP_674779.1 response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes YP_674780.1 KEGG: sme:SMa1229 FixL oxygen regulated histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4 PAS fold; SMART: PAS YP_674781.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc01698 putative oxidoreductase protein YP_674782.1 KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: CBS domain containing protein Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_674783.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: mlo:mll6586 hypothetical protein YP_674784.1 PFAM: GCN5-related N-acetyltransferase CoA-binding; KEGG: mlo:mlr6591 hypothetical protein YP_674785.1 PFAM: protein of unknown function UPF0118; KEGG: sme:SMb21335 conserved putative membrane protein, possibly a permease YP_674786.1 KEGG: mlo:mll6587 hypothetical protein YP_674787.1 PFAM: UspA; KEGG: mlo:mlr6594 hypothetical protein YP_674788.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase-like Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: sme:SMa1155 cation transport P-type ATPase, hypothetical YP_674789.1 PFAM: CBS domain containing protein transport-associated; KEGG: sme:SMa1086 hypothetical protein YP_674790.1 TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; KEGG: eba:ebA6232 starch phosphorylase YP_674791.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bja:bll2517 acetate kinase YP_674792.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: nwi:Nwi_1947 putative phosphoketolase YP_674793.1 PFAM: cytochrome c, class I; KEGG: rpb:RPB_1376 cytochrome c, class I YP_674794.1 PFAM: UspA; KEGG: sme:SMa1158 hypothetical protein YP_674795.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_674796.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; KEGG: vfi:VF0407 ornithine carbamoyltransferase YP_674797.1 catalyzes the degradation of arginine to citruline and ammonia YP_674798.1 PFAM: C4-dicarboxylate anaerobic carrier; KEGG: ppr:PBPRA0478 putative membrane protein YP_674799.1 TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: rpa:RPA4145 dissimilatory nitrite reductase YP_674800.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain; KEGG: sme:SMc04047 probable pseudoazurin (blue copper protein) YP_674801.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: bja:blr7084 transcriptional regulatory protein YP_674802.1 KEGG: rpc:RPC_3946 hypothetical protein YP_674803.1 PFAM: UspA; KEGG: ret:RHE_PC00109 putative universal stress UspA protein YP_674804.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: mlo:mll6590 cation-transporting ATPase YP_674805.1 CcoN; FixN YP_674806.1 CcoO; FixO YP_674807.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: sme:SMa0616 FixQ3 nitrogen fixation protein YP_674808.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: sme:SMa0617 FixP3 cytochrome c oxidase membrane anchored subunit YP_674809.1 KEGG: sme:SMa0620 hypothetical protein YP_674810.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: mlo:mll6624 nitrogen fixation protein fixI YP_674811.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: sme:SMa0622 FixS2 nitrogen fixation protein YP_674812.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: rru:Rru_A0164 sulfate transporter/antisigma-factor antagonist YP_674813.1 PFAM: helix-turn-helix motif; KEGG: rpa:RPA4327 transcriptional regulator, XRE family YP_674814.1 PFAM: Thioredoxin domain; KEGG: mlo:mll6589 thioredoxin YP_674815.1 KEGG: mlo:mll6588 hypothetical protein YP_674816.1 PFAM: NUDIX hydrolase; KEGG: sme:SMb20988 hypothetical protein YP_674817.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: bms:BR1061 alcohol dehydrogenase, zinc-containing YP_674818.1 PFAM: transport-associated; KEGG: pst:PSPTO1664 hypothetical protein YP_674819.1 KEGG: sme:SMb20879 hypothetical protein YP_674820.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: dehydrogenase, E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit YP_674821.1 PFAM: Transketolase, central region Transketolase-like; KEGG: gka:GK0711 thiamine pyrophosphate-dependent dehydrogenases, E1 component beta subunit YP_674822.1 KEGG: mta:Moth_1798 hypothetical protein YP_674825.1 PFAM: membrane bound O-acyl transferase, MBOAT; KEGG: zmo:ZMO0446 putative alginate O-acetyltransferase YP_674827.1 PFAM: nitroreductase; KEGG: reu:Reut_A1153 nitroreductase YP_674828.1 KEGG: noc:Noc_2438 sigma 54 modulation protein/ribosomal protein S30EA YP_674830.1 PFAM: heat shock protein Hsp20; KEGG: sme:SMa1118 probable HspC2 heat shock protein YP_674831.1 PFAM: Calcium-binding EF-hand; KEGG: ret:RHE_PE00236 hypothetical protein YP_674832.1 KEGG: hma:pNG6050 hypothetical protein YP_674833.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: rsp:RSP_2572 CrpK, Fnr-type transcriptional regulator YP_674834.1 KEGG: mlo:mll6598 hypothetical protein YP_674835.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMa1120 ABC transporter, ATP binding protein, hypothetical YP_674836.1 PFAM: protein of unknown function DUF214; KEGG: bja:bll7987 hypothetical protein YP_674837.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bja:bll7986 putative HlyD family secretion protein YP_674838.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mlo:mll6595 hypothetical protein YP_674839.1 PFAM: protein of unknown function DUF302; KEGG: bja:blr5777 hypothetical protein YP_674840.1 PFAM: acriflavin resistance protein; KEGG: sil:SPO1525 transporter, AcrB/AcrD/AcrF family YP_674841.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sil:SPO1526 efflux transporter, RND family, MFP subunit YP_674842.1 KEGG: rpb:RPB_4303 hypothetical protein YP_674843.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3562 sulfide-quinone reductase YP_674844.1 PFAM: regulatory protein, ArsR; KEGG: rpb:RPB_4378 transcriptional regulator, ArsR family YP_674845.1 proposed role in polysaccahride synthesis YP_674846.1 PFAM: NIPSNAP domain containing protein; KEGG: bpm:BURPS1710b_2212 NIPSNAP superfamily YP_674847.1 PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: ppu:PP2608 shikimate dehydrogenase family protein YP_674848.1 PFAM: glucose-inhibited division protein A fumarate reductase/succinate dehydrogenase flavoprotein-like; KEGG: tte:TTE2589 hypothetical protein YP_674849.1 PFAM: Amidase; KEGG: dar:Daro_1360 amidase YP_674850.1 PFAM: extracellular solute-binding protein, family 1; KEGG: mlo:mll0854 putative multiple sugar transport system substrate-binding protein YP_674851.1 PFAM: beta-lactamase; KEGG: bja:bll5708 hypothetical protein YP_674852.1 PFAM: regulatory protein, ArsR; KEGG: fra:Francci3_2809 hypothetical protein YP_674853.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: fra:Francci3_2808 hypothetical protein YP_674854.1 KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase YP_674855.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: tma:TM1276 putative multiple sugar transport system ATP-binding protein YP_674856.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hma:rrnAC3195 sugar ABC transporter permease protein YP_674857.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0800 ABC-type sugar transport systems, permease components YP_674858.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01977 putative sugar-binding periplasmic ABC transporter protein YP_674859.1 PFAM: isochorismatase hydrolase; KEGG: bpa:BPP3892 putative hydrolase YP_674860.1 PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sma:SAV3701 putative IclR-family transcriptional regulator YP_674861.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpb:RPB_3121 short-chain dehydrogenase/reductase SDR YP_674863.1 PFAM: Rhodanese-like; KEGG: rpa:RPA3614 hypothetical protein YP_674864.1 PFAM: regulatory protein, LuxR Autoinducer-binding Sigma-70, region 4 type 2; KEGG: rpb:RPB_3321 transcriptional regulator, LuxR family YP_674865.1 PFAM: autoinducer synthesis protein; KEGG: rpb:RPB_3320 autoinducer synthesis protein YP_674866.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family YP_674867.1 KEGG: mlo:msl9602 hypothetical protein YP_674868.1 PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI YP_674869.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein YP_674870.1 PFAM: Conjugal transfer protein; KEGG: nwi:Nwi_2093 conjugal transfer protein YP_674871.1 type IV secretion VirB6 family YP_674872.1 KEGG: nar:Saro_0313 hypothetical protein YP_674873.1 KEGG: mlo:mll9607 conjugal transfer protein trbJ YP_674874.1 type IV secretion system VirB4 family YP_674875.1 KEGG: mlo:mll9611 conjugal transfer protein trbB YP_674876.1 PFAM: Conjugal transfer protein TrbC; KEGG: mlo:mll9610 conjugal transfer protein trbC YP_674877.1 PFAM: type II secretion system protein E; KEGG: mlo:mll9612 conjugal transfer protein trbB YP_674878.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: sme:SMc01745 hypothetical protein YP_674879.1 PFAM: CopG-like DNA-binding; KEGG: rpa:RPA4131 helix-turn-helix protein, CopG family YP_674880.1 type IV secretion VirD4 coupling protein family YP_674881.1 KEGG: rpa:RPA4133 hypothetical protein YP_674882.1 PFAM: helix-turn-helix motif; KEGG: nar:Saro_0368 transcriptional regulator, XRE family YP_674883.1 KEGG: nwi:Nwi_2851 conserved hypothetical/unknown protein YP_674884.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase YP_674885.1 PFAM: protein of unknown function DUF736; KEGG: bja:bll0046 hypothetical protein YP_674886.1 KEGG: bja:bll0047 conjugal transfer protein precursor YP_674887.1 KEGG: bja:bll0048 hypothetical protein YP_674888.1 KEGG: bja:bsl0049 hypothetical protein YP_674889.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: bja:bll0050 putative partition protein YP_674890.1 KEGG: mlo:msr9739 hypothetical protein YP_674891.1 KEGG: rpa:RPA2241 hypothetical protein YP_674892.1 KEGG: rpc:RPC_3912 hypothetical protein YP_674893.1 PFAM: protein of unknown function DUF736; KEGG: nwi:Nwi_2134 protein of unknown function DUF736 YP_674894.1 KEGG: rpa:RPA2244 hypothetical protein YP_674895.1 KEGG: nwi:Nwi_2132 hypothetical protein YP_674896.1 KEGG: nwi:Nwi_2130 hypothetical protein YP_674897.1 KEGG: nwi:Nwi_2129 hypothetical protein YP_674898.1 KEGG: bja:bll0065 putative DNA-binding protein YP_674899.1 PFAM: ParB-like nuclease; KEGG: bja:bll0065 putative DNA-binding protein YP_674900.1 KEGG: bja:bll0066 hypothetical protein YP_674901.1 KEGG: pto:PTO0809 hypothetical protein YP_674902.1 TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; KEGG: afu:AF2089 hypothetical protein YP_674905.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: pfo:Pfl_0739 phosphoadenosine phosphosulfate reductase YP_674906.1 KEGG: bfs:BF1251 hypothetical protein YP_674907.1 PFAM: N-6 DNA methylase; KEGG: pca:Pcar_0121 hypothetical protein YP_674908.1 PFAM: Helix-turn-helix, type 11 YP_674909.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr7177 transcriptional regulator YP_674910.1 PFAM: aminotransferase, class IV; KEGG: bms:BRA0934 D-alanine aminotransferase, putative YP_674911.1 KEGG: pma:Pro0264 predicted amidase YP_674912.1 KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit YP_674913.1 KEGG: sme:SMa1641 probable NreB protein YP_674914.1 KEGG: sme:SMa1641 probable NreB protein YP_674915.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rru:Rru_A1613 cystathionine beta-lyase YP_674916.1 PFAM: peptidase M24; KEGG: rpb:RPB_4421 peptidase M24 YP_674917.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase YP_674918.1 PFAM: regulatory proteins, IclR; KEGG: rpb:RPB_4432 transcriptional regulator, IclR family YP_674919.1 PFAM: chaperonin Cpn60/TCP-1; KEGG: rco:RC0968 60 kD chaperonin YP_674920.1 KEGG: mlo:mll2948 ABC transporter, ATP-binding protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase YP_674921.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3546 ABC transporter permease protein YP_674922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPOA0383 spermidine/putrescine ABC transporter, permease protein YP_674923.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: ret:RHE_PC00028 probable polyamine ABC transporter, substrate-binding protein YP_674924.1 PFAM: aminotransferase, class V; KEGG: sru:SRU_1188 aminotransferase, class V superfamily YP_674925.1 PFAM: peptidase M24; KEGG: rpb:RPB_4421 peptidase M24 YP_674926.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: bha:BH1016 oligopeptide transport system substrate-binding protein YP_674927.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mlr1973 glycine cleavage system transcription activator YP_674928.1 KEGG: ava:Ava_1266 xenobiotic compound monooxygenase, DszA family, A subunit YP_674929.1 PFAM: Amidase; KEGG: sme:SMa1377 putative amidase YP_674930.1 PFAM: regulatory proteins, IclR; KEGG: rpb:RPB_4432 transcriptional regulator, IclR family YP_674931.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: reu:Reut_A1355 cystathionine beta-lyase, bacterial YP_674932.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB YP_674933.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll2866 ABC transporter permease protein YP_674934.1 KEGG: pst:PSPTO2573 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_674935.1 PFAM: flavin reductase-like, FMN-binding; KEGG: reu:Reut_B5770 flavin reductase-like, FMN-binding YP_674936.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atc:AGR_C_3765 hypothetical protein YP_674937.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein YP_674938.1 KEGG: bpa:BPP0373 hypothetical protein YP_674939.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB3868 hypothetical protein YP_674940.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase YP_674941.1 PFAM: regulatory protein, MerR Citrate synthase; KEGG: atc:AGR_pAT_441 hypothetical protein YP_674942.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: reu:Reut_B3820 argininosuccinate lyase YP_674943.1 PFAM: NAD/NADP octopine/nopaline dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like Ketopantoate reductase ApbA/PanE-like; KEGG: sth:STH257 NAD/NADP octopine/nopaline dehydrogenase YP_674944.1 KEGG: bbr:BB1105 hypothetical protein YP_674945.1 PFAM: peptidase M24; KEGG: dra:DR1246 proline dipeptidase YP_674946.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: cgb:cg2635 chloromuconate cycloisomerase YP_674947.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: rsp:RSP_3409 TRAP-T family transporter, large (12 TMs) inner membrane subunit YP_674949.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1912 uncharacterized protein UPF0065 YP_674950.1 PFAM: Endoribonuclease L-PSP; KEGG: son:SO0337 hypothetical translation initiation inhibitor, YjgF family YP_674951.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: hsa:54363 hydroxyacid oxidase (glycolate oxidase) 1 YP_674952.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: atc:AGR_L_318 hypothetical ABC transporter ATP-binding protein in bcr 5'region YP_674953.1 PFAM: purine phosphorylase, family 2; KEGG: pfu:PF0853 5'-methylthioadenosine phosphorylase II YP_674954.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: sth:STH1703 putative N-ethylammeline chlorohydrolase YP_674955.1 PFAM: beta-lactamase-like; KEGG: sso:SSO2940 hypothetical protein YP_674956.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_4129 binding-protein-dependent transport systems inner membrane component YP_674957.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1423 oligopeptide ABC transporter permease protein YP_674958.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sth:STH1422 oligopeptide ABC transporter substrate-binding protein YP_674960.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_B4992 regulatory protein, LysR:LysR, substrate-binding YP_674961.1 PFAM: Peptidoglycan-binding domain 1 N/apple PAN; SMART: Apple; KEGG: noc:Noc_0669 peptidoglycan-binding domain 1 YP_674962.1 PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein YP_674963.1 TIGRFAM: conserved repeat domain; PFAM: protein of unknown function DUF11; KEGG: rsp:RSP_3667 transcriptional regulator, AraC family with parallel beta-helix repeat YP_674964.1 KEGG: jan:Jann_3574 hypothetical protein YP_674965.1 PFAM: aminotransferase class-III; KEGG: mlo:mll7127 putative aminotransferase YP_674966.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7128 succinic semialdehyde dehydrogenase YP_674967.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: atc:AGR_L_238 hypothetical protein YP_674968.1 PFAM: peptidase M24; KEGG: mlo:mlr8570 dipeptidase YP_674969.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: sth:STH1148 N-acyl-L-amino acid amidohydrolase YP_674970.1 PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme YP_674971.1 KEGG: rsp:RSP_3230 hypothetical protein YP_674972.1 PFAM: phosphoesterase, RecJ-like; KEGG: mma:MM0213 putative single-stranded-DNA-specific exonuclease YP_674973.1 PFAM: UV-endonuclease UvdE; KEGG: bsu:BG11309 similar to UV-endonuclease YP_674974.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpb:RPB_4670 cytochrome bd ubiquinol oxidase, subunit I YP_674975.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpa:RPA4794 putative cytochrome bd-quinol oxidase subunit II YP_674976.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin 4Fe-4S ferredoxin, iron-sulfur binding molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: bja:blr2317 formate dehydrogenase alpha subunit YP_674977.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sil:SPO0833 formate dehydrogenase, beta subunit YP_674978.1 PFAM: SirA-like; KEGG: nwi:Nwi_0975 SirA-like protein YP_674979.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: bja:blr2312 molybdopterin biosynthesis protein YP_674980.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; KEGG: bja:bll2310 formate dehydrogenase accessory protein YP_674981.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_674982.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain MoeA-like, domain I and II MoeA-like, domain IV; KEGG: bja:blr2308 putative molybdopterin biosynthesis protein YP_674983.1 PFAM: molybdopterin binding domain MoeA-like, domain IV; KEGG: bja:blr2307 hypothetical protein YP_674984.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bja:bll6227 putative sulfate transport system substrate-binding protein YP_674985.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mag:amb3045 ABC-type polar amino acid transport system, ATPase component YP_674986.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb3046 ABC-type tungstate transport system, periplasmic component YP_674987.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein, MerR; KEGG: bja:bll2305 hypothetical protein YP_674988.1 KEGG: sme:SMa1515 hypothetical protein YP_674989.1 PFAM: WD-40 repeat cytochrome c, class I; KEGG: bja:bll5485 hypothetical protein YP_674990.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: bja:blr5484 putative ferredoxin YP_674991.1 KEGG: bja:bll5483 hypothetical protein YP_674992.1 KEGG: sil:SPO1805 hypothetical protein YP_674993.1 KEGG: bja:bll5482 hypothetical protein YP_674994.1 KEGG: mag:amb2667 molybdopterin-guanine dinucleotide biosynthesis protein A YP_674995.1 KEGG: bja:bll5481 hypothetical protein YP_674996.1 PFAM: cytoplasmic chaperone TorD; KEGG: bja:bll5480 putative chaperone YP_674997.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: bja:bsl5479 hypothetical protein YP_674998.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region molybdopterin oxidoreductase Fe4S4 region; KEGG: mag:amb2671 anaerobic dehydrogenase YP_674999.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: bja:bll5476 formate dehydrogenase iron-sulfur subunit YP_675000.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bja:bll5475 putative formate dehydrogenase YP_675001.1 KEGG: nfa:nfa45730 putative ATP-dependent RNA helicase YP_675002.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH02714 putative glyoxalase/bleomycin resistance-like protein YP_675003.1 PFAM: regulatory protein, TetR; KEGG: fra:Francci3_3148 transcriptional regulator, TetR family YP_675004.1 PFAM: regulatory protein, MarR; KEGG: mlo:mll8302 transcriptional regulator YP_675005.1 An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine YP_675006.1 PFAM: regulatory protein, LuxR Tetratricopeptide TPR_4; KEGG: sco:SCO5506 regulatory protein YP_675007.1 PFAM: alpha/beta hydrolase fold putative RNA methylase Cyclopropane-fatty-acyl-phospholipid synthase UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: nfa:nfa1190 hypothetical protein YP_675008.1 PFAM: FAD linked oxidase-like Berberine/berberine-like; KEGG: mlo:mlr6875 probable oxidoreductase YP_675009.1 PFAM: UbiE/COQ5 methyltransferase Methyltransferase type 11 Methyltransferase type 12; KEGG: jan:Jann_3724 methyltransferase type 11 YP_675010.1 KEGG: pma:Pro1226 hypothetical protein YP_675011.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:bll2775 transcriptional regulatory protein YP_675012.1 TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR; PFAM: regulatory protein, MarR; KEGG: bmb:BruAb2_1099 transcriptional regulator, MarR family YP_675013.1 PFAM: flavin reductase-like, FMN-binding; KEGG: psb:Psyr_0995 flavin reductase-like YP_675014.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: pae:PA4091 4-hydroxyphenylacetate 3-monooxygenase large chain YP_675015.1 PFAM: helix-turn-helix, AraC type; KEGG: pae:PA0248 probable transcriptional regulator YP_675016.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein; KEGG: rpa:RPA2984 putative diguanylate cyclase (GGDEF) YP_675017.1 PFAM: GCN5-related N-acetyltransferase RimK-like ATP-grasp; KEGG: sme:SMb20482 hypothetical protein YP_675018.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: sme:SMb20481 putative asparagine synthetase (glutamine amidotransferase) protein YP_675019.1 PFAM: regulatory protein, MarR transcriptional regulator TrmB Penicillinase repressor; KEGG: vfi:VFA1063 transcriptional regulator, MarR family YP_675021.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sme:SMb20333 probable transporter protein YP_675023.1 PFAM: cytochrome c oxidase, subunit II; KEGG: mlo:mlr1039 cytochrome c oxidase subunit II YP_675024.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sme:SMc01983 cytochrome c oxidase subunit I YP_675025.1 PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1042 cytochrome c oxidase subunit III YP_675026.1 PFAM: cytochrome c oxidase, subunit III; KEGG: mlo:mlr1043 cytochrome c oxidase subunit III YP_675027.1 KEGG: bja:bll3781 hypothetical protein YP_675028.1 KEGG: mlo:mll1046 cytochrome c oxidase subunit I YP_675029.1 PFAM: Endoribonuclease L-PSP; KEGG: mlo:mll5429 hypothetical protein YP_675030.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: bms:BR1085 glutaryl-CoA dehydrogenase YP_675031.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rsp:RSP_1297 transcriptional regulator, LysR family YP_675032.1 KEGG: sme:SMb21328 putative Sir2-like transcriptional silencer protein YP_675033.1 PFAM: Bile acid:sodium symporter; KEGG: mlo:mlr6784 hypothetical protein YP_675034.1 KEGG: atc:AGR_C_2100 conserved hypothetical protein XF1641 YP_675035.1 PFAM: protein of unknown function DUF1311; KEGG: pfo:Pfl_3894 protein of unknown function DUF1311 YP_675036.1 KEGG: mlo:mlr0822 hypothetical protein YP_675037.1 PFAM: helix-turn-helix, AraC type; KEGG: atc:AGR_L_475 hypothetical protein YP_675038.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: eba:ebA5362 predicted TRAP dicarboxylate transporter, DctP subunit YP_675039.1 KEGG: eba:ebB188 hypothetical protein YP_675040.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eba:ebA5367 conserved hypothetical protein, predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily YP_675041.1 PFAM: Cupin 2, conserved barrel; KEGG: pfl:PFL_3363 2,4'-dihydroxyacetophenone dioxygenase YP_675042.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase YP_675043.1 PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_L_1010GM hypothetical protein YP_675044.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: dde:Dde_0262 ATPase YP_675045.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: rpa:RPA1751 putative branched-chain amino acid transport system ATP-binding protein YP_675046.1 PFAM: inner-membrane translocator; KEGG: bbr:BB0402 putative branched-chain amino acid transport permease YP_675047.1 PFAM: inner-membrane translocator; KEGG: ade:Adeh_2425 ABC branched-chain amino acid transporter, inner membrane subunit YP_675048.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB0404 putative branched-chain amino acid binding protein YP_675049.1 PFAM: beta-lactamase-like; KEGG: eca:ECA2849 metallo-beta-lactamase YP_675050.1 PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; KEGG: gox:GOX0786 hypothetical protein YP_675051.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ccr:CC2333 phage SPO1 DNA polymerase-related protein YP_675052.1 PFAM: HpcH/HpaI aldolase; KEGG: bmb:BruAb2_1093 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, hypothetical YP_675053.1 TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase; PFAM: Hydratase/decarboxylase; KEGG: jan:Jann_3499 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_675054.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BRA1159 fumarylacetoacetate hydrolase family protein YP_675055.1 TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bme:BMEII0136 homoprotocatechuate 2,3-dioxygenase YP_675056.1 TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bms:BRA1161 5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase YP_675057.1 PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: bms:BRA1162 5-carboxymethyl-2-hydroxymuconate delta isomerase YP_675058.1 PFAM: Uncharacterized protein UPF0065; KEGG: sme:SMb20724 putative tricarboxylic transport membrane protein YP_675059.1 KEGG: sco:SCO1139 integral membrane protein YP_675060.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:blr3163 hypothetical protein YP_675061.1 PFAM: MmgE/PrpD; KEGG: bba:Bd2500 2-methylcitrate dehydratase YP_675062.1 KEGG: bbr:BB4108 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_675063.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: psp:PSPPH_2055 transcriptional regulator, GntR family YP_675064.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_675065.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: vpa:VPA1118 3-hydroxyisobutyrate dehydrogenase YP_675066.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB3422 putative inner membrane transport protein YP_675067.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB3255 C4-dicarboxylate transport system permease large protein YP_675068.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: oih:OB3257 C4-dicarboxylate transport system C4-dicarboxylate-binding protein YP_675069.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMb20375 putative transcriptional regulator protein YP_675070.1 PFAM: protein of unknown function DUF1185; KEGG: ret:RHE_PF00199 hypothetical protein YP_675071.1 KEGG: ret:RHE_PF00198 hypothetical protein YP_675072.1 PFAM: flavin reductase-like, FMN-binding; KEGG: ret:RHE_PF00197 probable nitrilotriacetate monooxygenase component B protein YP_675073.1 PFAM: aldehyde dehydrogenase; KEGG: atc:AGR_pAT_320 NADP-dependent aldehyde dehydrogenase YP_675074.1 PFAM: luciferase-like; KEGG: ret:RHE_PF00195 putative oxidoreductase protein YP_675075.1 PFAM: alpha/beta hydrolase fold; KEGG: ret:RHE_PF00194 probable 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase protein YP_675076.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: ret:RHE_PF00193 gamma-carboxymuconolactone decarboxylase protein YP_675077.1 PFAM: NIPSNAP domain containing protein; KEGG: atc:AGR_pAT_315 hypothetical protein YP_675078.1 KEGG: atc:AGR_pAT_303 glycine betaine/L-proline transport ATP-binding protein ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein ABC transporter related; SMART: ATPase YP_675079.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline YP_675080.1 with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine YP_675081.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: xcv:XCV0161 putative amidase/aminoacylase/peptidase family protein YP_675082.1 PFAM: protein of unknown function DUF81; KEGG: nar:Saro_1204 protein of unknown function DUF81 YP_675084.1 PFAM: beta-lactamase-like; KEGG: xcv:XCV2445 putative metallo-beta-lactamase superfamily protein YP_675085.1 activates fatty acids by binding to coenzyme A YP_675086.1 SMART: Rhodanese-like; KEGG: mlo:mlr0536 hypothetical protein YP_675087.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation Cupin 2, conserved barrel; KEGG: pae:PA1599 probable transcriptional regulator YP_675088.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: psb:Psyr_3605 trimethylamine-N-oxide reductase (cytochrome c) YP_675089.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sth:STH3194 histidine ammonia-lyase YP_675090.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc00670 histidine transport ATP-binding ABC transporter protein YP_675091.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00671 histidine transport system permease ABC transporter protein YP_675092.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc00672 histidine-binding periplasmic signal peptide protein YP_675093.1 PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein YP_675094.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_675095.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_675096.1 PFAM: glutathione S-transferase-like; KEGG: bmb:BruAb1_1487 glutathione S-transferase family protein YP_675097.1 PFAM: protein of unknown function DUF917; KEGG: mta:Moth_0210 protein of unknown function DUF917 YP_675098.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: reu:Reut_C5891 regulatory protein, LysR:LysR, substrate-binding YP_675101.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sme:SMb20301 putative dehydgrogenase protein YP_675103.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_0080 hypothetical protein YP_675104.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_675105.1 catalyzes the formation of oxaloacetate from L-aspartate YP_675106.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_675107.1 KEGG: mlo:mll5836 hypothetical protein YP_675108.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_675109.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_675110.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_675111.1 TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll5793 thiamine biosynthesis oxidoreductase ThiO YP_675112.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS; KEGG: mlo:msl5792 thiamin biosynthesis ThiS YP_675113.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_675114.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_675115.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mlo:mll5788 phosphomethylpyrimidine kinase YP_675116.1 KEGG: bmb:BruAb1_0116 outer membrane protein, hypothetical YP_675117.1 PFAM: dihydrodipicolinate synthetase; KEGG: rru:Rru_A2066 dihydrodipicolinate synthetase YP_675118.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: ret:RHE_PC00043 putative transcriptional regulator protein, AsnC/GntR family YP_675119.1 KEGG: bth:BT1924 putative metal-dependent hydrolase YP_675120.1 PFAM: Cupin 2, conserved barrel; KEGG: rpa:RPA1275 hypothetical protein YP_675121.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: reu:Reut_B5021 helix-turn-helix, AraC type:AraC protein, arabinose-binding/dimerisation YP_675122.1 catalyzes the formation of protocatechuate from 4-hydroxybenzoate YP_675123.1 PFAM: regulatory protein, LuxR; KEGG: ret:RHE_CH01362 probable two-component response regulator protein YP_675124.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: rsp:RSP_3616 transcriptional regulator, Crp-Fnr family YP_675125.1 PFAM: polysaccharide pyruvyl transferase; KEGG: vpa:VP1319 hypothetical protein YP_675126.1 KEGG: rpa:RPA3345 hypothetical protein YP_675127.1 PFAM: glycoside hydrolase, family 16; KEGG: ret:RHE_CH03380 endo-1,3-1,4-beta-glycanase protein YP_675128.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase phosphopantetheine-binding; KEGG: ava:Ava_4833 amino acid adenylation YP_675129.1 TIGRFAM: amino acid adenylation domain; PFAM: beta-ketoacyl synthase AMP-dependent synthetase and ligase acyl transferase region condensation domain aminotransferase class-III phosphopantetheine-binding; KEGG: rpa:RPA3339 possible polyketide synthase YP_675130.1 PFAM: condensation domain phosphopantetheine-binding; KEGG: ava:Ava_1613 non-ribosomal peptide synthase YP_675131.1 KEGG: aci:ACIAD0603 hypothetical protein YP_675132.1 PFAM: 4'-phosphopantetheinyl transferase; KEGG: gvi:glr2851 hetI protein homolog YP_675133.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rpa:RPA3350 putative aminotransferase YP_675134.1 PFAM: glucose-methanol-choline oxidoreductase FAD dependent oxidoreductase GMC oxidoreductase; KEGG: rpa:RPA3344 possible oxidoreductase YP_675135.1 KEGG: ava:Ava_4835 hypothetical protein YP_675136.1 PFAM: polysaccharide biosynthesis protein; KEGG: gvi:gll1781 probable polysaccharide transport protein YP_675138.1 PFAM: sugar transferase; KEGG: ret:RHE_CH03385 exopolysaccharide production protein YP_675139.1 PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH03383 probable glycosyltransferase protein YP_675140.1 PFAM: glycosyl transferase, family 2; KEGG: ret:RHE_CH03387 probable glycosyltransferase protein YP_675141.1 PFAM: lipopolysaccharide biosynthesis; KEGG: ret:RHE_CH03233 exopolysaccharide polymerization protein YP_675142.1 PFAM: polysaccharide export protein; KEGG: ret:RHE_CH01370 exopolysaccharide biosynthesis protein (OMA family outer membrane saccharide export protein) YP_675143.1 PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH03382 probable glycosyltransferase protein YP_675144.1 KEGG: tdn:Tmden_0199 hypothetical protein YP_675145.1 KEGG: sme:SMc03145 hypothetical unknown protein YP_675146.1 KEGG: mbo:Mb3541 PE-PGRS family protein YP_675147.1 KEGG: sme:SMc03148 hypothetical protein YP_675148.1 KEGG: sme:SMc03147 putative ATP-binding ABC transporter protein; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: ATPase YP_675149.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD; KEGG: sme:SMc03146 putative transport protein YP_675150.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: tcx:Tcr_1011 periplasmic ATP/GTP-binding protein YP_675151.1 PFAM: Rieske [2Fe-2S] region; KEGG: bja:bll6221 Rieske iron-sulfur protein YP_675152.1 PFAM: Pyrrolo-quinoline quinone; KEGG: bja:bll6220 putative alcohol dehydrogenase precursor YP_675153.1 SMART: Pyrrolo-quinoline quinone; KEGG: pfl:PFL_2221 quinoprotein ethanol dehydrogenase YP_675155.1 PFAM: pentapeptide repeat; KEGG: gvi:gll2892 hypothetical protein YP_675156.1 KEGG: rsp:RSP_2584 hypothetical protein YP_675157.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: bja:blr6189 hypothetical protein YP_675158.1 KEGG: pfl:PFL_2209 hypothetical protein YP_675159.1 PFAM: ABC-2 type transporter; KEGG: sil:SPO1510 efflux ABC transporter, permease protein YP_675161.1 PFAM: acriflavin resistance protein; KEGG: mlo:mlr3649 RND efflux transporter YP_675162.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mlr3647 RND efflux membrane fusion protein precursor YP_675163.1 PFAM: regulatory protein, TetR; KEGG: mlo:mll3646 hypothetical protein YP_675164.1 PFAM: protein of unknown function DUF427; KEGG: sme:SMb21379 hypothetical protein YP_675165.1 PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO2835 dipeptide ABC transporter, periplasmic dipeptide-binding protein YP_675166.1 KEGG: sil:SPO2831 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_675167.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2833 dipeptide ABC transporter, permease protein YP_675168.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2834 dipeptide ABC trasnporter, permease protein YP_675169.1 PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: rsp:RSP_3035 putative transporter, major facilitator superfamily (MFS) YP_675170.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: ret:RHE_CH00352 histidine ammonia-lyase protein YP_675171.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: mth:MTH269 argininosuccinate lyase YP_675172.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ret:RHE_CH00487 probable transcriptional regulator protein, LysR family YP_675173.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rpa:RPA4693 putative FMN oxidoreductase YP_675174.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: sme:SMa0306 putative histidine ammonia-lyase YP_675175.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: sil:SPO2835 dipeptide ABC transporter, periplasmic dipeptide-binding protein YP_675176.1 KEGG: sil:SPO2831 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_675177.1 KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_675178.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO2833 dipeptide ABC transporter, permease protein YP_675179.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3030 ABC peptide/opine transporter, inner membrane subunit YP_675180.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_675181.1 PFAM: protein of unknown function DUF917; KEGG: ret:RHE_CH00349 hypothetical protein YP_675182.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_675183.1 PFAM: amidohydrolase; KEGG: ret:RHE_CH00351 probable allantoinase protein YP_675184.1 PFAM: Rhodanese-like; KEGG: mag:amb1299 rhodanese-related sulfurtransferase YP_675185.1 PFAM: aminotransferase, class I and II Thioredoxin domain; KEGG: bcl:ABC2888 aminotransferase YP_675186.1 PFAM: FAD dependent oxidoreductase; KEGG: sme:SMc03200 putative amino acid deaminase transmembrane protein YP_675187.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: rpa:RPA4653 biotin sulfoxide reductase YP_675188.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: atc:AGR_pTi_63 putative N-methylhydantoinase B YP_675189.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: atc:AGR_pTi_62 putative N-methylhydantoinase A YP_675190.1 PFAM: extracellular solute-binding protein, family 5; KEGG: reu:Reut_A1926 extracellular solute-binding protein, family 5 YP_675191.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0756 putative transport system permease protein YP_675192.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0030 oligopeptide transport system permease protein YP_675193.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mlr6287 ABC transporter ATP-binding protein YP_675194.1 PFAM: aldehyde dehydrogenase; KEGG: cgb:cg0067 succinate-semialdehyde dehydrogenase (NADP+) YP_675195.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ret:RHE_PF00365 putative alcohol dehydrogenase protein YP_675196.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_2160 short-chain dehydrogenase/reductase YP_675197.1 Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA YP_675198.1 KEGG: sme:SMb21041 conserved putative protein, possibly related to processing of cell wall amino acids YP_675199.1 PFAM: MmgE/PrpD; KEGG: cvi:CV1809 hypothetical protein YP_675200.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rru:Rru_A3199 extracellular solute-binding protein, family 1 YP_675201.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pub:SAR11_1337 spermidine/putrescine transport ATP-binding protein PotA YP_675202.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1307 similar to ABC-type Fe3+ transport system permease component YP_675203.1 KEGG: rpa:RPA2648 hypothetical protein YP_675204.1 KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase YP_675205.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rso:RS01682 probable transcription regulator protein YP_675206.1 catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position YP_675208.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_675209.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase YHS E1-E2 ATPase-associated region; KEGG: mlo:mlr5325 cation transporting P-type ATPase YP_675210.1 PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: bms:BRA0311 transporter, putative YP_675211.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: ret:RHE_PE00019 putative multidrug ABC transporter, ATP-binding protein YP_675212.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: mlo:mll7118 ABC-transport protein, ATP-binding component YP_675213.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: sme:SMb20170 probable glutathione-dependent formaldehyde dehydrogenase protein YP_675214.1 KEGG: ret:RHE_PB00004 hypothetical protein YP_675215.1 KEGG: stm:STM1559 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain YP_675216.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; KEGG: rsp:RSP_2451 putative 4-alpha-glucanotransferase YP_675217.1 KEGG: rsp:RSP_2450 putative alpha-amylase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain YP_675218.1 KEGG: rsp:RSP_2449 putative glycosyl hydrolase; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain YP_675219.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_675220.1 KEGG: rsp:RSP_2446 putative trehalose synthase; TIGRFAM: trehalose synthase trehalose synthase-fused probable maltokinase; PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain YP_675221.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rsp:RSP_2445 putative alpha amylase YP_675222.1 PFAM: Urease accessory protein UreD; KEGG: sme:SMc01942 probable urease accessory protein YP_675223.1 TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region; KEGG: sme:SMc01941 urease gamma subunit protein YP_675224.1 PFAM: HupE/UreJ protein; KEGG: atc:AGR_C_4126 hupe protein precursor YP_675225.1 TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; KEGG: jan:Jann_1747 urease, beta subunit YP_675226.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_675227.1 PFAM: UreE urease accessory-like; KEGG: rpb:RPB_1867 UreE urease accessory-like YP_675228.1 PFAM: Urease accessory protein UreF; KEGG: ret:RHE_CH03301 urease accessory protein YP_675229.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: mlo:mll4934 urease accessory protein G YP_675230.1 PFAM: glycosyl transferase, group 1; KEGG: ade:Adeh_1016 glycosyl transferase, group 1 YP_675231.1 PFAM: LmbE-like protein; KEGG: ade:Adeh_1017 LmbE-like protein YP_675232.1 KEGG: ret:RHE_CH02741 hypothetical protein YP_675233.1 PFAM: Nucleotidyl transferase; KEGG: ade:Adeh_0875 nucleotidyl transferase YP_675234.1 KEGG: ade:Adeh_0874 hypothetical protein YP_675235.1 PFAM: Phosphoglycerate mutase; KEGG: sme:SMb20250 hypothetical protein YP_675236.1 PFAM: GCN5-related N-acetyltransferase Myo-inositol-1-phosphate synthase Myo-inositol-1-phosphate synthase, GAPDH-like; KEGG: ret:RHE_CH02739 probable myo-inositol-1-phosphate synthase protein YP_675238.1 KEGG: ade:Adeh_1016 glycosyl transferase, group 1 YP_675239.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: ret:RHE_PB00059 putative methyltransferase protein YP_675240.1 PFAM: Methionine synthase, vitamin-B12 independent; KEGG: rpb:RPB_1584 methionine synthase, vitamin-B12 independent YP_675241.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ppr:PBPRA1278 hypothetical amino acid carrier protein(sodium/alanine symporter) YP_675242.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; in mycobacteria LigC has weak intrinsic nick joining activities and is not essential for growth YP_675243.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_675244.1 Catalyzes the rate-limiting step in dNTP synthesis YP_675245.1 Catalyzes the rate-limiting step in dNTP synthesis YP_675247.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: ret:RHE_CH02899 putative N-acetylglucosamine kinase protein YP_675248.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc02873 putative periplasmic binding (signal peptide) ABC transporter protein YP_675249.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr4772 sugar ABC transporter, permease protein YP_675250.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO1837 sugar ABC transporter, permease protein YP_675251.1 PFAM: oxidoreductase-like homoserine dehydrogenase, NAD-binding; KEGG: sme:SMc02870 putative oxidoreductase protein YP_675252.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: sme:SMc02869 putative ATP-binding ABC transporter protein YP_675253.1 PFAM: high-affinity nickel-transporter; KEGG: mlo:mlr2980 hypothetical protein YP_675254.1 PFAM: protein of unknown function DUF1007; KEGG: mlo:mlr2979 hypothetical protein YP_675255.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mlr2977 transcriptional regulator YP_675256.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_675257.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mll2974 ornithine decarboxylase YP_675258.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll2972 hypothetical protein YP_675259.1 KEGG: atc:AGR_L_743 hypothetical protein YP_675260.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bms:BRA0091 acetyltransferase, GNAT family YP_675261.1 PFAM: aminotransferase, class I and II; KEGG: mlo:mlr2987 aspartate aminotransferase YP_675262.1 KEGG: bmb:BruAb2_0090 ModC, molybdenum ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related TOBE; SMART: ATPase YP_675263.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_675264.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb2_0088 ModeA, molybdenum ABC transporter, periplasmic molybdenum-binding protein YP_675265.1 PFAM: protein of unknown function DUF533; KEGG: mlo:mll2991 hypothetical protein YP_675266.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_675267.1 PFAM: Peptidoglycan-binding LysM metallophosphoesterase 5'-Nucleotidase-like; KEGG: ret:RHE_CH03555 probable 5'-nucleotidase protein YP_675268.1 KEGG: mlo:mlr3016 outer membrane lipoprotein YP_675269.1 PFAM: homospermidine synthase; KEGG: mlo:mlr3014 homospermidine synthase YP_675270.1 PFAM: YCII-related; KEGG: cvi:CV4150 hypothetical protein YP_675271.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_675272.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F Oligopeptidase F; KEGG: mlo:mlr3002 oligoendopeptidase F YP_675273.1 PFAM: response regulator receiver sigma-54 factor, interaction region helix-turn-helix, Fis-type ATPase associated with various cellular activities, AAA_5; SMART: ATPase; KEGG: mlo:mll3001 response regulatory protein YP_675274.1 PFAM: protein of unknown function DUF882 Peptidase M15A; KEGG: bme:BMEII0010 hypothetical membrane associated protein YP_675275.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_675276.1 PFAM: Peptidoglycan-binding domain 1; KEGG: bmf:BAB2_0084 hypothetical protein YP_675277.1 PFAM: band 7 protein; KEGG: mlo:mlr3021 hypothetical protein YP_675278.1 PFAM: protein of unknown function DUF107; KEGG: mlo:mlr3022 hypothetical protein YP_675279.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein sugar isomerase (SIS); KEGG: mlo:mll3023 hypothetical protein YP_675280.1 KEGG: mlo:mlr3024 hypothetical protein YP_675281.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mlo:mll3025 UTP-glucose-1-phosphate uridylyltransferase YP_675282.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: bmb:BruAb2_0070 hypothetical transglycosylase YP_675283.1 PFAM: protein of unknown function DUF459; KEGG: mlo:mlr3028 hypothetical protein YP_675284.1 KEGG: ret:RHE_CH02529 hypothetical protein YP_675285.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_675286.1 PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: mlo:mll3030 glutamate synthase (NADPH) large chain YP_675287.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bms:BRA0052 threonine aldolase, low-specificity, putative YP_675288.1 PFAM: heat shock protein Hsp20; KEGG: mlo:mll3033 small heat shock protein YP_675289.1 PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr3034 lysophospholipase L2 YP_675290.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: mlo:mll3039 mono-phosphatase YP_675291.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mlo:mll3040 N-formylglutamate amidohydrolase YP_675292.1 PFAM: response regulator receiver; KEGG: mlo:mlr3041 chemotaxis response regulator YP_675293.1 KEGG: bmb:BruAb1_0945 glycosyl transferase, group 2 family protein YP_675294.1 PFAM: polysaccharide deacetylase; KEGG: bmb:BruAb1_0346 polysaccharide deacetylase family protein YP_675295.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: ecc:c3691 kpsS protein YP_675296.1 PFAM: polysaccharide export protein; KEGG: bpm:BURPS1710b_3301 WcbC YP_675297.1 PFAM: Capsule polysaccharide biosynthesis; KEGG: syd:Syncc9605_2216 possible polysaccharide export protein YP_675298.1 KEGG: sme:SMb20831 putative polysaccharide export-assoiated protein YP_675299.1 PFAM: ABC-2 type transporter; KEGG: bpe:BP1623 putative polysialic acid transport protein YP_675300.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20832 putative cell surface polysaccharide export ABC-2 transporter ATP-binding protein YP_675301.1 KEGG: nar:Saro_0730 hypothetical protein YP_675302.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mlo:mlr7550 glucose-1-phosphate thymidylyltransferase YP_675303.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: sme:SMb21325 putative dTDP-4-dehydrorhamnose 3,5-epimerase protein YP_675304.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mlr7552 dTDP-D-glucose-4,6-dehydratase YP_675305.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: mlo:mlr7553 dTDP-6-deoxy-L-mannose-dehydrogenase YP_675306.1 KEGG: sye:Syncc9902_1622 hypothetical protein YP_675307.1 KEGG: gox:GOX1125 glycosyltransferase YP_675308.1 KEGG: bmb:BruAb1_0531 hypothetical protein YP_675309.1 PFAM: metallophosphoesterase; KEGG: sme:SMb20081 hypothetical protein YP_675310.1 KEGG: ret:RHE_PB00048 hypothetical protein YP_675311.1 PFAM: Cold-shock protein, DNA-binding; KEGG: ava:Ava_4090 cold-shock DNA-binding domain protein YP_675312.1 PFAM: protein of unknown function DUF427; KEGG: mlo:mlr9549 hypothetical protein YP_675313.1 KEGG: rsp:RSP_2672 hypothetical protein YP_675314.1 KEGG: ppu:PP3831 hypothetical protein YP_675315.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ret:RHE_PB00058 dTDP-glucose 4,6-dehydratase protein YP_675316.1 KEGG: rsp:RSP_0515 hypothetical protein YP_675317.1 KEGG: ret:RHE_PB00056 hypothetical protein YP_675318.1 KEGG: ret:RHE_PB00055 hypothetical protein YP_675319.1 PFAM: glycosyl transferase, group 1; KEGG: sme:SMb20243 putative glycosyltransferase protein YP_675320.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ret:RHE_PB00053 probable nucleoside diphosphate epimerase protein YP_675321.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ret:RHE_PB00052 probable NDP-glucose dehydratase epimerase protein YP_675322.1 KEGG: rsp:RSP_1504 hypothetical protein YP_675323.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase NAD-dependent glycerol-3-phosphate dehydrogenase-like; KEGG: sme:SMc02641 UDP-glucose 6-dehydrogenase protein YP_675324.1 KEGG: ret:RHE_PF00267 hypothetical protein YP_675325.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ret:RHE_PB00051 putative oxidoreductase protein YP_675326.1 PFAM: oxidoreductase-like Oxidoreductase-like; KEGG: ret:RHE_PB00050 putative oxidoreductase protein YP_675327.1 KEGG: rsp:RSP_2678 hypothetical protein YP_675329.1 PFAM: CBS domain containing protein; KEGG: ret:RHE_CH02435 putative inosine-5'-monophosphate dehydrogenase protein YP_675331.1 KEGG: sme:SMb21371 hypothetical membrane protein YP_675332.1 PFAM: cytochrome c oxidase, subunit I; KEGG: sme:SMb21370 putative cytochrome c oxidase chain I protein YP_675333.1 PFAM: cytochrome c oxidase, subunit II cytochrome c, class I; KEGG: sme:SMb21368 putative cytochrome c oxidase chain II protein YP_675334.1 PFAM: cytochrome c, class I; KEGG: sme:SMb21367 putative cytochrome c class I protein, probably cytochrome c4 YP_675335.1 KEGG: sme:SMb21366 hypothetical membrane protein YP_675336.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: bmb:BruAb1_0302 transporter, hypothetical YP_675337.1 PFAM: acriflavin resistance protein; KEGG: bms:BR0277 AcrB/AcrD/AcrF multidrug efflux protein YP_675338.1 PFAM: MaoC-like dehydratase; KEGG: mlo:mlr3097 nodulation protein NodN-Rhizobium leguminosarum YP_675339.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3100 oxidoreductase, short chain dehydrogenase/reductase YP_675340.1 KEGG: bbr:BB3937 hypothetical protein YP_675341.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_675342.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: ret:RHE_CH03608 probable O-linked GlcNAc transferase protein YP_675343.1 PFAM: protein of unknown function DUF992; KEGG: mlo:mlr3122 hypothetical protein YP_675344.1 KEGG: sme:SMc00666 hypothetical protein YP_675345.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: mlo:mlr5184 nicotinamide nucleotide transhydrogenase, subunit beta YP_675346.1 KEGG: sme:SMc03939 probable NAD(P) transhydrogenase subunit alpha PART 2 transmembrane protein YP_675347.1 PFAM: alanine dehydrogenase/PNT-like; KEGG: mlo:mlr5181 nicotinamide nucleotide transhydrogenase, subunit alpha1 YP_675348.1 KEGG: sme:SMc03941 hypothetical protein YP_675349.1 KEGG: bur:Bcep18194_C6798 hypothetical protein YP_675350.1 KEGG: mlo:mlr5177 hypothetical protein YP_675351.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL PAS fold-4; KEGG: mlo:mlr5176 hypothetical protein YP_675352.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates YP_675353.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: bbr:BB0704 hypothetical protein YP_675354.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRA1404 hypothetical permease component of C4 dicarboxylatetransporter YP_675355.1 PFAM: Exopolysaccharide synthesis, ExoD; KEGG: sme:SMc00353 putative transmembrane protein YP_675356.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component YP_675357.1 PFAM: glutamine amidotransferase class-I peptidase C26; KEGG: mlo:mll5165 hypothetical protein YP_675358.1 KEGG: mlo:mlr5164 hypothetical protein YP_675359.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mlo:mlr5162 glycerate dehydrogenase YP_675360.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase YP_675361.1 catalyzes the interconversion of D-xylose to D-xylulose YP_675363.1 TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: mlo:mlr4184 transcriptional regulator PcaR YP_675364.1 PFAM: coenzyme A transferase; KEGG: mlo:mll4183 acetate CoA-transferase, alpha subunit YP_675365.1 PFAM: coenzyme A transferase; KEGG: mlo:mll4181 acetoacetyl-CoA transferase b subunit YP_675366.1 catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA YP_675367.1 PFAM: PilT protein-like; KEGG: xac:XACb0059 virulence associated protein YP_675368.1 PFAM: SpoVT/AbrB-like; KEGG: xac:XACb0060 virulence plasmid protein YP_675369.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mlo:mll5129 hypothetical protein YP_675370.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate YP_675371.1 PFAM: protein of unknown function DUF861, cupin_3 Cupin 2, conserved barrel; KEGG: mlo:mll5131 hypothetical protein YP_675372.1 PFAM: polysaccharide deacetylase; KEGG: mlo:mll5132 hypothetical protein YP_675373.1 PFAM: Transthyretin; KEGG: mlo:mlr5133 hypothetical protein YP_675374.1 PFAM: ferredoxin molybdopterin dehydrogenase, FAD-binding [2Fe-2S]-binding CO dehydrogenase flavoprotein-like; KEGG: mlo:mlr5134 xanthine dehydrogenase, xdhA YP_675375.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mlo:mlr5135 xanthine dehydrogenase, xdhB YP_675376.1 PFAM: protein of unknown function DUF182; KEGG: mlo:mlr5136 xanthine dehydrogenase accessory factor YP_675377.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mll5139 transcriptional regulator YP_675378.1 PFAM: protein of unknown function DUF989; KEGG: mlo:mlr5140 hypothetical protein YP_675379.1 Catalyzes the deamination of guanine YP_675380.1 PFAM: MOFRL; KEGG: mlo:mlr5146 hypothetical hydroxypyruvate reductase protein YP_675381.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll5147 DNA polymerase bacteriophage-type YP_675382.1 KEGG: mlo:mll5154 hypothetical protein YP_675383.1 PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: sme:SMc02978 hypothetical protein YP_675384.1 PFAM: intradiol ring-cleavage dioxygenase; KEGG: ttj:TTHA1511 putative catechol 1,2-dioxygenase YP_675385.1 PFAM: Creatininase; KEGG: bms:BRA0986 creatinine amidohydrolase, putative YP_675386.1 PFAM: regulatory protein, MarR; KEGG: mlo:mlr5157 hypothetical protein YP_675387.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein, LacI; KEGG: bms:BRA0984 transcriptional regulator, putative YP_675388.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bpe:BP0814 probable LysR-family transcriptional regulator YP_675389.1 PFAM: regulatory protein, MerR; KEGG: ret:RHE_CH03720 putative transcriptional regulator protein, MerR family YP_675390.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC cadmium-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: sme:SMc04128 putative heavy metal transporting ATPase protein YP_675391.1 PFAM: ABC-3; KEGG: jan:Jann_2083 ABC-3 YP_675392.1 PFAM: ABC-3; KEGG: jan:Jann_2082 ABC-3 YP_675393.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sil:SPO3365 zinc/manganese/iron ABC transporter, ATP-binding protein YP_675394.1 PFAM: periplasmic solute binding protein; KEGG: sil:SPO3366 zinc/manganese/iron ABC transporter, periplasmic zinc/manganese/iron-binding protein YP_675395.1 PFAM: regulatory protein, LacI periplasmic binding protein/LacI transcriptional regulator; KEGG: jan:Jann_1945 transcriptional regulator, LacI family YP_675396.1 PFAM: extracellular solute-binding protein, family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter, substrate-binding protein YP_675397.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2872 ABC alpha-glucoside transporter, inner membrane subunit AglF YP_675398.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03063 alpha-glucosides transport system permease ABC transporter protein YP_675399.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: sme:SMc03065 alpha-glucosides transport ATP-binding ABC transporter protein YP_675400.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM; KEGG: sme:SMc03831 hypothetical protein YP_675401.1 PFAM: regulatory protein, ArsR; KEGG: ret:RHE_CH02425 probable transcriptional regulator protein, ArsR family YP_675402.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: ret:RHE_CH02426 hypothetical protein YP_675403.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mll4363 hypothetical protein YP_675404.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: bmb:BruAb2_0322 NagA, N-acetylglucosamine-6-phosphate deacetylase YP_675405.1 PFAM: sugar isomerase (SIS); KEGG: ret:RHE_CH04036 glucosamine--fructose-6-phosphate aminotransferase protein YP_675406.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_675407.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_675408.1 PFAM: protein of unknown function DUF534; KEGG: bmb:BruAb1_2028 ABC transporter, periplasmic substrate-binding protein, hypothetical YP_675409.1 PFAM: inner-membrane translocator; KEGG: atc:AGR_C_4842 probable ABC transporter, permease protein YP_675410.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_4841 probable ATP-binding component of ABC transporter YP_675411.1 KEGG: sme:SMb21515 hypothetical protein YP_675412.1 TIGRFAM: modification methylase, HemK family; PFAM: putative RNA methylase methyltransferase small; KEGG: sme:SMb21514 putative modification methylase protein YP_675413.1 KEGG: sme:SMb21513 putative cell-surface polysaccharide exporter protein, PST family YP_675414.1 KEGG: sme:SMb21512 hypothetical membrane protein YP_675415.1 PFAM: lipopolysaccharide biosynthesis; KEGG: sme:SMb21506 putative auxiliar protein involved in export of cell surface polysaccharides, MPA1 family without cytosolic domain, slightly ExoP-like YP_675416.1 PFAM: O-antigen polymerase; KEGG: sme:SMb21505 putative membrane protein, similar to Wzy-like polysaccharide polymerase ExoQ YP_675417.1 PFAM: polysaccharide deacetylase; KEGG: sme:SMb21504 putative protein, slightly similar to carbohydrate deacetylase YP_675418.1 PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21503 putative glycosyltransferase protein YP_675419.1 PFAM: glycosyl transferase, group 1; KEGG: sme:SMb21502 putative glycosyltransferase protein YP_675420.1 KEGG: rpb:RPB_1005 hypothetical protein YP_675421.1 PFAM: glycosyl transferase, family 2; KEGG: sme:SMb21500 putative glycosyltransferase protein YP_675422.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_675423.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMb20650 putative long-chain fatty-acid-CoA ligase protein YP_675424.1 KEGG: sme:SMb20651 hypothetical protein YP_675425.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: sme:SMb20652 putative asparagine synthetase protein YP_675426.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH01745 probable 4-hydroxyphenylpyruvate dioxygenase protein YP_675427.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: mlo:mlr8310 transcriptional regulator YP_675428.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mlo:mlr8306 hypothetical protein YP_675429.1 KEGG: gsu:GSU1834 peptidase, M50 family YP_675431.1 SMART: Pyrrolo-quinoline quinone; KEGG: bja:blr6207 probable quinoprotein ethanol dehydrogenase precursor YP_675432.1 PFAM: cytochrome c, class I YP_675433.1 SMART: extracellular solute-binding protein, family 3 YP_675434.1 PFAM: ABC-2 type transporter; KEGG: mta:Moth_2298 daunorubicin resistance ABC transporter membrane protein YP_675435.1 KEGG: pab:PAB1923 daunorubicin resistance transport system ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: ATPase YP_675439.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A1135 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_675440.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_0872 TRAP dicarboxylate transporter-DctM subunit YP_675441.1 KEGG: jan:Jann_2036 hypothetical protein YP_675442.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_0870 TRAP dicarboxylate transporter-DctP subunit YP_675443.1 PFAM: protein of unknown function DUF1330; KEGG: mlo:msl4750 hypothetical protein YP_675444.1 KEGG: syw:SYNW1557 hypothetical protein YP_675447.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: eba:ebA4468 DNA-binding response regulator OmpR YP_675448.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: reu:Reut_B3910 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_675449.1 KEGG: gvi:gll1315 hypothetical protein YP_675450.1 KEGG: bpa:BPP0744 hypothetical protein YP_675451.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B1885 major facilitator superfamily (MFS_1) transporter YP_675452.1 KEGG: bth:BT1924 putative metal-dependent hydrolase YP_675453.1 KEGG: rpb:RPB_0502 putative Omp2b porin YP_675455.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB0377 hypothetical protein YP_675456.1 KEGG: bbr:BB0376 hypothetical protein YP_675457.1 PFAM: DoxX; KEGG: sco:SCO0201 integral membrane protein SCJ1213c YP_675458.1 KEGG: ypm:pMT054 putative periplasmic protein YP_675459.1 PFAM: cytochrome c, class I; KEGG: pfo:Pfl_3552 cytochrome c, class I YP_675460.1 KEGG: ypm:pMT054 putative periplasmic protein YP_675461.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_675462.1 PFAM: aldehyde dehydrogenase; KEGG: jan:Jann_3794 aldehyde dehydrogenase YP_675463.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: eba:p2A120 UbiD-like subunit of potential (de) carboxylase YP_675464.1 PFAM: monooxygenase, FAD-binding; KEGG: bja:bll2502 hypothetical protein YP_675465.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: sme:SMb20135 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein YP_675466.1 PFAM: regulatory protein, MarR; KEGG: eba:ebA5682 transcriptional regulatory protein,MarR family YP_675467.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: ttj:TTHA0466 alcohol dehydrogenase YP_675468.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_0713 glyoxalase/bleomycin resistance protein/dioxygenase YP_675469.1 PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB3123 hypothetical protein YP_675470.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: dar:Daro_3790 regulatory protein GntR, HTH:GntR, C-terminal YP_675471.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bur:Bcep18194_C7651 glyoxalase/bleomycin resistance protein/dioxygenase YP_675472.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: jan:Jann_2035 TRAP-type C4-dicarboxylate transport system periplasmic component-like YP_675473.1 KEGG: jan:Jann_2036 hypothetical protein YP_675474.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_2037 TRAP dicarboxylate transporter-DctM subunit YP_675475.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bur:Bcep18194_C7653 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_675476.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_675477.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: eca:ECA2134 ABC transporter, substrate binding protein YP_675478.1 PFAM: aldo/keto reductase; KEGG: ret:RHE_CH00449 probable oxidoreductase protein YP_675479.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pae:PA1379 short chain dehydrogenase YP_675480.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: pfo:Pfl_3279 transcriptional regulator, LysR family YP_675481.1 PFAM: ThiJ/PfpI; KEGG: bbr:BB2338 probable transcriptional regulator YP_675482.1 PFAM: Alpha/beta hydrolase fold-3; KEGG: ret:RHE_CH01714 putative esterase/lipase/thioesterase family protein YP_675483.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ppu:PP3282 3-hydroxyacyl-CoA dehydrogenase PaaC YP_675484.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: pae:PA5234 quinone oxidoreductase YP_675485.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase-like 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: sth:STH214 3-hydroxyacyl-CoA dehydrogenase YP_675486.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: chy:CHY_1323 butyryl-CoA dehydrogenase YP_675487.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_4004 short-chain dehydrogenase/reductase SDR YP_675488.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_C6106 enoyl-CoA hydratase/isomerase YP_675489.1 PFAM: AMP-dependent synthetase and ligase; KEGG: ece:Z2730 hypothetical protein YP_675490.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: gka:GK2873 naphthoate synthase YP_675491.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4678 CaiB/BaiF family protein YP_675492.1 PFAM: sigma-54 factor, interaction region helix-turn-helix, Fis-type; SMART: ATPase; KEGG: reu:Reut_B3890 helix-turn-helix, fis-type YP_675493.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor sigma-54 factor, core-binding region sigma-54, DNA-binding; KEGG: bja:blr1883 RNA polymerase sigma-54 subunit YP_675494.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ade:Adeh_2342 alpha-methylacyl-CoA racemase YP_675495.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA1737 short chain dehydrogenase YP_675496.1 PFAM: NIPSNAP domain containing protein; KEGG: bja:bll3657 hypothetical protein YP_675497.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bbr:BB4071 4-carboxymuconolactone decarboxylase YP_675498.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: tfu:Tfu_1305 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component YP_675499.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tfu:Tfu_1306 ABC transporter, permease component YP_675500.1 KEGG: bmb:BruAb2_0896 hypothetical ABC transporter, periplasmic binding protein YP_675501.1 KEGG: tfu:Tfu_1304 similar to ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components YP_675502.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_C6315 short-chain dehydrogenase/reductase SDR YP_675503.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB2724 probable short-chain dehydrogenase YP_675504.1 PFAM: regulatory proteins, IclR; KEGG: mta:Moth_0375 transcriptional regulator, IclR family YP_675505.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: sme:SMc00459 putative mandelate racemase / muconate cycloisomerase YP_675506.1 KEGG: gme:Gmet_2205 coenzyme A transferase YP_675507.1 PFAM: coenzyme A transferase; KEGG: nph:NP6032A 3-oxoacid CoA-transferase , beta subunit YP_675508.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ppu:PP0159 CaiB/BaiF family protein YP_675509.1 PFAM: conserved hypothetical protein 698; KEGG: atc:AGR_C_1202 hypothetical protein YP_675510.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: atu:Atu0672 transcriptional regulator, LysR family YP_675511.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: mlo:mlr1729 ornithine cyclodeaminase YP_675512.1 KEGG: ava:Ava_5014 ABC-type phosphate/phosphonate transport system periplasmic component-like YP_675513.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family YP_675514.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cya:CYA_2230 quaternary amine uptake ABC transporter (QAT) family, substrate-binding protein YP_675515.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: mlo:mll7124 histidine ammonia-lyase YP_675516.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_1441 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein YP_675517.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cya:CYA_2571 quaternary amine ABC transporter (QAT) family, permease protein YP_675518.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sth:STH2630 glycine betaine/carnitine/choline ABC transporter ATP-binding protein YP_675519.1 PFAM: protein of unknown function DUF886; KEGG: ret:RHE_PE00069 hypothetical protein YP_675520.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_675521.1 PFAM: N-formylglutamate amidohydrolase; KEGG: ret:RHE_PE00071 formiminoglutamase protein YP_675522.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_675523.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_675524.1 catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate YP_675525.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ret:RHE_PE00075 probable transcriptional regulator protein, GntR family YP_675528.1 KEGG: nwi:Nwi_1935 protein of unknown function DUF196 YP_675530.1 PFAM: peptidase M23B; KEGG: bms:BR1861 peptidase, M23/M37 family YP_675531.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: mlo:mll3427 hypothetical protein YP_675532.1 PFAM: protein of unknown function DUF419; KEGG: mlo:mll3428 hypothetical protein YP_675533.1 PFAM: AAA ATPase, central region Clp, N terminal ATPase associated with various cellular activities, AAA_5 ATPase AAA-2; SMART: ATPase; KEGG: mlo:mll3429 endopeptidase Clp ATP-binding chain B, clpB YP_675534.1 KEGG: mlo:mll3431 hypothetical protein YP_675535.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small Methyltransferase type 12; KEGG: mlo:mll3434 protoporphyrinogen oxidase, hemK protein YP_675536.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_675537.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme GAF PEP-utilising enzyme, mobile region PEP-utilising enzyme-like; KEGG: mlo:mll3436 phosphoenolpyruvate-protein phosphotransferase, PtsP YP_675538.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_675539.1 Involved in ubiquinone biosynthesis YP_675540.1 PFAM: protein of unknown function DUF1178; KEGG: bms:BR1874 hypothetical protein YP_675541.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mlo:mll3450 similar to nitrilase, nitrilase 1 like protein YP_675542.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: mlo:msl3452 glutaredoxin YP_675543.1 PFAM: phosphoribosyltransferase; KEGG: mlo:mll3453 hypothetical protein YP_675544.1 PFAM: Methyltransferase type 11; KEGG: mlo:mlr3455 hypothetical protein YP_675546.1 KEGG: mlo:mll3458 hypothetical protein YP_675547.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: atc:AGR_L_2627 probable pyrophosphohydrolase YP_675548.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll3460 hypothetical protein YP_675549.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_675550.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: mlo:mll3467 similar to cell binding factor 2 precursor YP_675551.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_675555.1 PFAM: polysaccharide biosynthesis protein; KEGG: mlo:mlr3470 similar to polysaccharide biosynthesis related protein YP_675556.1 KEGG: mlo:mlr3471 hypothetical protein YP_675557.1 TIGRFAM: conserved repeat domain; KEGG: sme:SMc01710 hypothetical protein YP_675558.1 PFAM: peptidase M29, aminopeptidase II; KEGG: sme:SMc00382 probable aminopeptidase protein YP_675559.1 KEGG: ssp:SSP0994 hypothetical protein YP_675560.1 KEGG: mlo:mlr3476 hypothetical protein YP_675561.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mlo:mll3477 hypothetical protein YP_675562.1 PFAM: HhH-GPD; KEGG: bmb:BruAb1_1634 base-excision DNA repair protein YP_675563.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu YP_675564.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr3480 hypothetical protein YP_675565.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: mlo:mll3481 contains similarity to transporter (YfkH) YP_675566.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3482 short chain dehydrogenase YP_675567.1 KEGG: ret:RHE_CH03789 hypothetical protein YP_675568.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mlo:mlr3485 hypothetical protein YP_675569.1 PFAM: Rhomboid-like protein; KEGG: atc:AGR_L_2465 hypothetical protein YP_675570.1 PFAM: electron transfer flavoprotein beta-subunit; KEGG: mlo:mlr3487 electron transfer flavoprotein beta chain, (ETFSS) YP_675571.1 PFAM: electron transfer flavoprotein beta-subunit electron transfer flavoprotein, alpha subunit; KEGG: bmb:BruAb1_1946 EtfA, electron transfer flavoprotein, alpha subunit YP_675572.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_675573.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_675574.1 PFAM: Redoxin; KEGG: mlo:mll3505 thioredoxin-like protein YP_675575.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_675576.1 KEGG: mlo:mlr3507 hypothetical protein YP_675577.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mlr3508 diaminopimelate decarboxylase YP_675578.1 KEGG: rsp:RSP_0128 OpgC protein YP_675579.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space YP_675580.1 involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans YP_675581.1 PFAM: regulatory protein, MarR; KEGG: eba:ebA5386 bacterial regulatory protein, MarR YP_675582.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: mag:amb4454 L-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase YP_675583.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: ret:RHE_PF00381 putative mandelate racemase protein YP_675584.1 PFAM: Uncharacterized protein UPF0065; KEGG: bcl:ABC3606 hypothetical protein YP_675586.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: oih:OB2838 putative tricarboxylic transport membrane protein YP_675587.1 PFAM: Asp/Glu racemase; KEGG: ape:APE2520 arylmalonate decarboxylase YP_675588.1 PFAM: major facilitator superfamily MFS_1; KEGG: ppu:PP2367 major facilitator family transporter YP_675589.1 PFAM: aldo/keto reductase; KEGG: sme:SMc00101 putative oxidoreductase protein YP_675590.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:blr6963 transcriptional regulatory protein YP_675591.1 SMART: regulatory protein, LuxR; KEGG: atc:AGR_C_3081 hypothetical protein YP_675593.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: mlo:mlr3583 hippurate hydrolase YP_675594.1 PFAM: beta-lactamase peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bme:BMEI0035 D-alanyl-D-alanine carboxypeptidase YP_675595.1 PFAM: cobalamin synthesis protein, P47K cobalamin synthesis CobW-like; KEGG: bms:BR2035 cobalamin synthesis protein/P47K family protein YP_675596.1 PFAM: SirA-like; KEGG: mlo:msr3579 hypothetical protein YP_675597.1 PFAM: protein of unknown function DUF949; KEGG: mlo:mlr3577 hypothetical protein YP_675598.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_675599.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_675600.1 KEGG: mlo:mlr3574 hypothetical protein YP_675601.1 PFAM: shikimate kinase; KEGG: mlo:mll3573 shikimate kinase YP_675602.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_675603.1 PFAM: CBS domain containing protein protein of unknown function DUF21 transporter-associated region; KEGG: sme:SMc00697 hypothetical protein YP_675604.1 PFAM: BolA-like protein; KEGG: mlo:mlr3565 putative BolA protein YP_675605.1 PFAM: heat shock protein DnaJ-like; KEGG: mlo:mll3564 hypothetical protein YP_675606.1 TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bme:BMEI0049 CobS protein YP_675607.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: atc:AGR_C_4363 hypothetical protein YP_675608.1 KEGG: mlo:mll3561 CobT protein; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A YP_675609.1 KEGG: mlo:mll3560 hypothetical protein YP_675610.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: bmb:BruAb1_1989 hypothetical membrane protein YP_675611.1 required for 70S ribosome assembly YP_675612.1 PFAM: regulatory protein, ArsR; KEGG: sme:SMb20608 putative transcriptional regulator, ArsR family protein YP_675613.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: sme:SMb20607 hypothetical protein YP_675614.1 PFAM: glutathione S-transferase-like; KEGG: ccr:CC2901 glutathione S-transferase family protein YP_675615.1 KEGG: bms:BR2016 hypothetical protein YP_675616.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mll3550 hypothetical protein YP_675617.1 PFAM: beta-lactamase-like; KEGG: mlo:mlr3546 putative glyoxalase II YP_675618.1 PFAM: Methyltransferase type 11; KEGG: mlo:mll3545 hypothetical protein YP_675619.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: rpa:RPA3112 2-nitropropane dioxygenase YP_675620.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_675621.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_675622.1 dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate YP_675623.1 KEGG: mlo:mlr3533 hypothetical protein YP_675624.1 PFAM: ChaC-like protein; KEGG: mlo:mll3532 similar to cation transport protein YP_675625.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mlo:mlr3529 probable 1-acyl-SN-glycerol-3-phosphate acyltransferase YP_675626.1 PFAM: protein of unknown function DUF218; KEGG: mlo:mlr3524 hypothetical protein YP_675627.1 PFAM: protein of unknown function DUF214; KEGG: mlo:mlr3523 similar to cell division protein FtsX YP_675628.1 KEGG: mlo:mlr3522 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: ATPase YP_675630.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: mlo:mll3520 hypoxanthine-guanine phosphoribosyltransferase YP_675631.1 PFAM: response regulator receiver; KEGG: mlo:msl3517 response regulator YP_675632.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth YP_675633.1 PFAM: chaperonin Cpn10; KEGG: mlo:mlr2393 heat shock protein groES YP_675634.1 TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr3512 hypothetical protein YP_675635.1 KEGG: mlo:msl3681 hypothetical protein YP_675636.1 KEGG: mlo:mll3682 hypothetical protein YP_675637.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3683 aromatic metabolite ABC transporter YodE YP_675638.1 PFAM: PRC-barrel; KEGG: mlo:mll3685 hypothetical protein YP_675639.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: mlo:mlr3686 similar to multidrug resistance protein BmrU YP_675640.1 KEGG: mlo:mll3691 hypothetical protein YP_675641.1 PFAM: protein of unknown function DUF883, ElaB; KEGG: mlo:mll3692 hypothetical protein YP_675642.1 PFAM: protein of unknown function UPF0118; KEGG: bja:bll1467 hypothetical protein YP_675643.1 KEGG: mlo:mlr3696 hypothetical protein YP_675644.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_675645.1 KEGG: mlo:msl3698 hypothetical protein YP_675646.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_675647.1 PFAM: protein of unknown function DUF1328; KEGG: mlo:msr3702 hypothetical protein YP_675648.1 KEGG: mlo:mlr3707 hypothetical protein YP_675649.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3710 ABC-transport system ATP binding protein YP_675650.1 PFAM: inner-membrane translocator; KEGG: mlo:mll3711 xylose transport permease protein xylH YP_675651.1 TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ret:RHE_CH03172 xylose ABC transporter, substrate-binding protein YP_675652.1 PFAM: ROK domain containing protein; KEGG: mlo:mlr3714 Xyl repressor YP_675653.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mll3716 phosphate regulatory protein, PhoB YP_675654.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU; KEGG: mlo:mll3718 phosphate transport regulon regulator PhoU YP_675655.1 KEGG: ret:RHE_CH00512 phosphate ABC transporter, ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: ATPase YP_675656.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aci:ACIAD1214 high-affinity phosphate transport protein (ABC superfamily, membrane) YP_675657.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aci:ACIAD1213 high-affinity phosphate transport protein (ABC superfamily, membrane) YP_675658.1 KEGG: aci:ACIAD1212 putative phosphate transporter (ABC superfamily, peri-bind) YP_675659.1 KEGG: ttj:TTHA1458 hypothetical protein YP_675660.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: ttj:TTHA1459 ABC transporter, ATP-binding protein YP_675661.1 KEGG: tth:TTC1096 ABC transporter permease protein YP_675662.1 KEGG: mlo:msr0529 hypothetical protein YP_675663.1 KEGG: sme:SMc00663 hypothetical protein YP_675664.1 KEGG: sme:SMc00662 hypothetical/unknown protein YP_675665.1 KEGG: mlo:mll0951 hypothetical protein YP_675666.1 PFAM: aldo/keto reductase; KEGG: dar:Daro_2761 aldo/keto reductase YP_675667.1 PFAM: regulatory protein GntR, HTH; KEGG: sth:STH2673 GntR family transcriptional regulator YP_675668.1 PFAM: extracellular solute-binding protein, family 5; KEGG: gsu:GSU1433 peptide ABC transporter, periplasmic peptide-binding protein YP_675669.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1241 oligopeptide ABC transporter permease YP_675670.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_1130 oligopeptide/dipeptide ABC transporter, permease protein YP_675671.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: hma:pNG7365 serine protease YP_675672.1 KEGG: bja:bll0990 peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_675673.1 KEGG: bja:bll0989 peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_675674.1 PFAM: amidohydrolase Amidohydrolase 3; KEGG: bja:bll5494 hypothetical protein YP_675675.1 SMART: Parallel beta-helix repeat; KEGG: mma:MM1983 hypothetical protein YP_675676.1 PFAM: dihydrodipicolinate synthetase; KEGG: rpa:RPA3190 possible dihydrodipicoline synthase related protein YP_675677.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rsp:RSP_3441 hypothetical protein YP_675678.1 KEGG: jan:Jann_2209 hypothetical protein YP_675679.1 PFAM: protein of unknown function DUF1469; KEGG: rsp:RSP_2383 putative integral membrane protein YP_675680.1 KEGG: noc:Noc_1592 hypothetical protein YP_675681.1 KEGG: tcr:503865.60 hypothetical protein Pfam: TolA PROSITE: ALA_RICH GLU_RICH YP_675682.1 KEGG: mlo:mll3738 putative fimbrial subunit PilA YP_675683.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 pseudouridine synthase; KEGG: mlo:mlr3740 pseudouridine synthase YP_675684.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sma:SAV6281 putative ABC transporter ATP-binding protein - glutamine transport YP_675685.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV6282 putative glutamine ABC transporter permease protein YP_675686.1 PFAM: extracellular solute-binding protein, family 3; KEGG: blo:BL1118 probable amino-acid binding protein for ABC transporter system YP_675687.1 PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation Cupin 2, conserved barrel; KEGG: bbr:BB0428 probable transcriptional regulator YP_675688.1 PFAM: Alpha/beta hydrolase fold-3; KEGG: bpe:BP0285 putative acetyl esterase YP_675689.1 PFAM: Cupin 2, conserved barrel; KEGG: pst:PSPTO3051 2,4'-dihydroxyacetophenone dioxygenase YP_675690.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bur:Bcep18194_B3149 short-chain dehydrogenase/reductase SDR YP_675691.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20 peptidase dimerisation; KEGG: atc:AGR_L_3029 hypothetical protein YP_675692.1 KEGG: sab:SAB1256c probable transcriptional regulator YP_675693.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_675694.1 KEGG: mlo:mll3872 hypothetical protein YP_675696.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_675697.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mlo:mlr3874 hypothetical protein YP_675698.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_675699.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_675700.1 PFAM: sodium:dicarboxylate symporter; KEGG: atc:AGR_C_1476 hypothetical protein YP_675701.1 KEGG: mlo:mll3877 hypothetical protein YP_675702.1 PFAM: porin, opacity type; KEGG: mlo:mll3878 hypothetical protein YP_675703.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_675704.1 KEGG: mlo:mll3882 metalloprotease (cell division protein) FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41 AAA ATPase, central region peptidase M41, FtsH extracellular ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_675705.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; KEGG: mlo:mll3884 similar to YaeN protein [Bradyrhizobium japonicum], contains similarity to cell cycle protein MesJ/cytosine deaminase-related protein YP_675706.1 PFAM: Tetratricopeptide TPR_2; KEGG: mlo:mll3886 hypothetical protein YP_675707.1 PFAM: OmpA/MotB; KEGG: mlo:mll3887 omp16 protein - Brucella abortus, contains similarity to peptidoglycan-associated lipoprotein precursor YP_675708.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_675709.1 KEGG: bmb:BruAb1_1683 TolA, TolA protein YP_675710.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bmb:BruAb1_1684 TonB system transport protein, ExbD/TolR family YP_675711.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mlo:mll3891 TolQ protein, inner membrane protein, tolerance to group A colicins YP_675712.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily; KEGG: mlo:mll3892 hypothetical protein YP_675713.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_675715.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_675716.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_675717.1 PFAM: protein of unknown function DUF1465; KEGG: mlo:mll3903 hypothetical protein YP_675718.1 PFAM: protein of unknown function DUF81; KEGG: mlo:mll3907 putative integral membrane protein YP_675719.1 catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole YP_675720.1 PFAM: Sel1-like repeat; KEGG: mlo:mlr3914 hypothetical protein YP_675721.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_675722.1 PFAM: inositol monophosphatase; KEGG: mlo:mlr3921 putative myo-inositol-1(or 4)-monophosphatase YP_675723.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: mca:MCA0612 UDP-glucose 4-epimerase YP_675724.1 KEGG: mlo:mlr3925 hypothetical protein YP_675725.1 PFAM: OmpA/MotB; KEGG: mlo:mlr3926 similar to flagellar motor protein MotB YP_675726.1 KEGG: mlo:mll3934 ABC transporter, ATP-binding protein; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase YP_675727.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_675728.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; KEGG: sme:SMc00345 selenoprotein W-related protein YP_675729.1 PFAM: protein of unknown function DUF28; KEGG: bmb:BruAb1_1702 hypothetical protein YP_675730.1 KEGG: bja:blr7935 hypothetical protein YP_675731.1 PFAM: Integral membrane protein TerC; KEGG: bms:BR1721 hypothetical protein YP_675732.1 TIGRFAM: conserved hypothetical protein; PFAM: metallophosphoesterase; KEGG: mlo:mll3953 hypothetical protein YP_675733.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mlo:mll3954 hypothetical protein YP_675734.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_675735.1 PFAM: protein of unknown function DUF1332; KEGG: mlo:mll4217 hypothetical protein YP_675736.1 PFAM: HemY-like Tetratricopeptide TPR_2; KEGG: mlo:mll4218 weak similarity to E. coli HemY protein YP_675737.1 KEGG: mlo:mll4219 putative phage tail protein YP_675738.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane YP_675739.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_675740.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_675741.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_675742.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_675743.1 PFAM: protein of unknown function DUF55; KEGG: bhe:BH16120 hypothetical protein YP_675744.1 PFAM: isochorismatase hydrolase; KEGG: sme:SMc02275 probable pyrazinamidase/nicotinamidase (includes: pyrazinamidase, nicotinamidase) protein YP_675745.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase-like; KEGG: mlo:mlr4078 hypothetical protein YP_675746.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_675747.1 KEGG: mlo:mll4075 hypothetical protein YP_675748.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: ret:RHE_CH03878 putative acyltransferase protein YP_675749.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_675750.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_675751.1 KEGG: mlo:mll4068 hypothetical protein YP_675752.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_675753.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_675754.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_675755.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_675756.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_675757.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: gka:GK2932 superoxide dismutase (Cu/Zn) YP_675758.1 PFAM: regulatory protein, MarR; KEGG: sme:SMc03824 putative transcription regulator protein YP_675759.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc03825 putative transport protein YP_675760.1 PFAM: carbonic anhydrase; KEGG: mlo:mlr4135 similar to carbonic anhydrase YP_675761.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_675762.1 KEGG: mlo:msr4131 hypothetical protein YP_675763.1 PFAM: LemA; KEGG: bmb:BruAb1_1801 LemA hypothetical YP_675764.1 PFAM: protein of unknown function DUF477; KEGG: mlo:mll4128 hypothetical protein YP_675765.1 PFAM: protein of unknown function DUF477; KEGG: mlo:mll4125 hypothetical protein YP_675766.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4122 hypothetical protein YP_675767.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_675768.1 KEGG: mlo:mlr4119 hypothetical protein YP_675769.1 PFAM: protein of unknown function DUF167; KEGG: mlo:msl4154 hypothetical protein YP_675770.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sme:SMc03818 putative exodeoxyribonuclease III protein YP_675771.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: mlo:mll4242 hypothetical protein YP_675772.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: ATPase; KEGG: mlo:mll4243 cell division protein ftsK homolog YP_675773.1 TIGRFAM: ammonium transporter; PFAM: Rh-like protein/ammonium transporter; KEGG: atc:AGR_C_5001 probable ammonium transporter protein YP_675774.1 PFAM: nitrogen regulatory protein P-II; KEGG: atc:AGR_C_4999 probable nitrogen regulatory protein YP_675775.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: bms:BR1898 acyl-CoA thioesterase II YP_675776.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: mlo:mlr4251 2-octaprenyl-6-methoxyphenol 4-monoxygenase, ubiH YP_675777.1 PFAM: OsmC-like protein; KEGG: mlo:mlr4254 osmotically inducible protein C, putative ATP/GTP binding protein YP_675778.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: sth:STH1827 leucine dehydrogenase YP_675779.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: sme:SMc02467 probable peptide methionine sulfoxide reductase protein YP_675780.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_675781.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_675782.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: bms:BR1903 succinate dehydrogenase, hydrophobic membrane anchor protein, putative YP_675783.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mlo:mll4266 succinate dehydrogenase membrane anchor subunit YP_675784.1 PFAM: DoxX; KEGG: mlo:mll1779 hypothetical protein YP_675785.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bmb:BruAb1_1881 acetyltransferase, GNAT family YP_675786.1 KEGG: mlo:mlr4269 hypothetical protein YP_675787.1 KEGG: sme:SMb20359 hypothetical protein YP_675788.1 KEGG: sme:SMb20360 hypothetical protein YP_675789.1 KEGG: ret:RHE_PB00043 hypothetical protein YP_675790.1 PFAM: protein of unknown function DUF1244; KEGG: sme:SMc04008 hypothetical protein YP_675791.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mlo:mlr3822 hypothetical protein YP_675792.1 PFAM: protein of unknown function DUF1036; KEGG: bmb:BruAb1_1734 hypothetical protein YP_675793.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_675794.1 PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mlr3815 hypothetical protein YP_675795.1 TIGRFAM: ribosomal protein L36; KEGG: ret:RHE_CH03533 50S ribosomal protein L36 YP_675796.1 part of the thiamine and TPP transport system tbpA-thiPQ YP_675797.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine YP_675798.1 KEGG: mlo:mll3864 thiamine ABC transporter, ATP-binding protein; TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; SMART: ATPase YP_675799.1 PFAM: peptidase M48, Ste24p; KEGG: mlo:mll3863 hypothetical protein YP_675800.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mlo:mlr4428 DNA polymerase III alpha chain YP_675801.1 KEGG: mlo:mlr4427 hypothetical protein YP_675802.1 KEGG: mlo:mlr4426 contains weak similarity to RecA protein YP_675803.1 PFAM: protein of unknown function DUF1025; KEGG: mlo:mll4425 hypothetical protein YP_675804.1 KEGG: mlo:msr4423 hypothetical protein YP_675805.1 PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr4422 citrate lyase beta chain YP_675806.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_675807.1 PFAM: protein of unknown function DUF343; KEGG: mlo:msl4429 hypothetical protein YP_675808.1 PFAM: peptidase S16, lon-like; KEGG: mlo:mll4430 contains similarity to ATP-dependent protease YP_675809.1 TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_4 Thioredoxin domain; KEGG: mlo:mll4432 thioredoxin YP_675812.1 PFAM: Cupin 2, conserved barrel; KEGG: eba:ebA5613 putative gentisate 1,2-dioxygenase oxidoreductase protein YP_675813.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: eba:ebA5616 probable maleylpyruvate isomerase YP_675814.1 PFAM: acyl-CoA dehydrogenase-like; KEGG: rpb:RPB_0558 acyl-CoA dehydrogenase-like YP_675815.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: reu:Reut_C6297 acyl-CoA dehydrogenase, C-terminal YP_675816.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein YP_675817.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: tfu:Tfu_1647 acyl-CoA dehydrogenase YP_675818.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: chy:CHY_0434 transcriptional regulator, GntR family YP_675819.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4746 hypothetical protein YP_675820.1 PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: jan:Jann_3769 monooxygenase, FAD-binding YP_675821.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1736 enoyl-CoA hydratase/isomerase family protein YP_675822.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:blr2779 hypothetical protein YP_675823.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rso:RSc1203 NADPH quinone oxidoreductase, putative YP_675824.1 PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3558 uncharacterized protein UPF0065 YP_675825.1 PFAM: protein of unknown function DUF1468; KEGG: ade:Adeh_2247 hypothetical protein YP_675826.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: atc:AGR_C_184 hypothetical protein YP_675827.1 PFAM: acyl-CoA dehydrogenase-like Acyl-CoA dehydrogenase, type 2-like; KEGG: bbr:BB4752 acyl-CoA dehydrogenase YP_675828.1 PFAM: MaoC-like dehydratase; KEGG: bbr:BB4751 hypothetical protein YP_675829.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: mth:MTH1205 L-sulfolactate dehydrogenase YP_675830.1 PFAM: major facilitator superfamily MFS_1; KEGG: sco:SCO2344 integral membrane transport protein YP_675831.1 KEGG: bja:bll4432 hypothetical protein YP_675832.1 PFAM: regulatory proteins, IclR; KEGG: bur:Bcep18194_B0283 transcriptional regulator, IclR family YP_675833.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: lpn:lpg2683 DlpA protein YP_675834.1 PFAM: protein of unknown function DUF1468; KEGG: reu:Reut_B3643 protein of unknown function DUF1468 YP_675835.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bbr:BB4222 hypothetical protein YP_675836.1 PFAM: Uncharacterized protein UPF0065; KEGG: ecc:c4776 hypothetical protein YP_675837.1 PFAM: NAD(P)H dehydrogenase (quinone) NADPH-dependent FMN reductase; KEGG: sbo:SBO_2185 hypothetical protein YP_675838.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: ecj:JW0883 predicted DNA-binding transcriptional regulator YP_675839.1 PFAM: regulatory proteins, IclR Helix-turn-helix, type 11; KEGG: sth:STH2538 transcriptional regulator YP_675840.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_675841.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll7197 dehydrogenase YP_675842.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ret:RHE_CH00560 cold shock protein YP_675843.1 PFAM: regulatory proteins, IclR; KEGG: sil:SPOA0143 transcriptional regulator, IclR family YP_675844.1 PFAM: aminotransferase, class V; KEGG: sil:SPOA0144 serine--glyoxylate transaminase, putative YP_675845.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: cps:CPS_4888 putative threonine dehydratase, catabolic YP_675846.1 PFAM: alanine racemase-like; KEGG: jan:Jann_2604 alanine racemase-like YP_675847.1 PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: jan:Jann_2605 ornithine cyclodeaminase YP_675848.1 PFAM: protein of unknown function DUF326; KEGG: sco:SCO3281 hypothetical protein YP_675849.1 PFAM: Uncharacterized protein UPF0065; KEGG: ret:RHE_CH03584 hypothetical protein YP_675850.1 KEGG: sme:SMb20725 putative tricarboxylic transport membrane protein YP_675851.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: sme:SMb20726 conserved hypothetical membrane protein YP_675852.1 PFAM: NUDIX hydrolase; KEGG: ret:RHE_CH00128 putative NTP pyrophosphohydrolase protein, MutT/NUDIX family (responsible for removing an oxidativelydamaged form of guanine from DNA and the nucleotide pool) YP_675853.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA YP_675854.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: mlo:mlr3988 transcriptional regulator YP_675855.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb1_1811 MmsA, methylmalonic acid semialdehyde dehydrogenase YP_675856.1 KEGG: sme:SMc02642 hypothetical signal peptide protein YP_675857.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mlo:mlr3982 putative transcriptional regulator YP_675858.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll3980 D-amino-acid dehydrogenase YP_675859.1 PFAM: inner-membrane translocator; KEGG: bja:blr5671 ABC transporter permease protein YP_675860.1 PFAM: inner-membrane translocator; KEGG: bja:blr5672 ABC transporter permease protein YP_675861.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_4398 ATPase YP_675862.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3974 ATP-binding component of ABC transporter YP_675863.1 KEGG: bmb:BruAb1_1768 hypothetical protein YP_675864.1 PFAM: Extracellular ligand-binding receptor; KEGG: rru:Rru_A1746 extracellular ligand-binding receptor YP_675865.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_675866.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr3825 transmembrane transport protein, weak similarity to MosC protein - Rhizobium meliloti YP_675867.1 KEGG: dar:Daro_2051 conserved hypothetical transmembrane protein YP_675868.1 PFAM: acriflavin resistance protein; KEGG: mlo:mll3832 multidrug resistance protein YP_675869.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD; KEGG: mlo:mll3833 similar to periplasmic linker protein YP_675870.1 PFAM: regulatory protein, TetR; KEGG: mlo:mlr3838 transcriptional regulator YP_675871.1 TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bmb:BruAb1_1762 hypothetical D-beta-hydroxybutyrate dehydrogenase YP_675872.1 KEGG: mlo:mlr8427 hypothetical protein YP_675873.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_675875.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_675876.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: mlo:mlr4380 chorismate mutase YP_675877.1 KEGG: mlo:mlr4379 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G-domain Signal peptide binding (SRP54) M-domain; SMART: ATPase YP_675878.1 PFAM: protein of unknown function DUF1236 protein of unknown function DUF1058 SH3, type 3; KEGG: ret:RHE_CH03012 hypothetical protein YP_675879.1 TIGRFAM: lytic murein transglycosylase; KEGG: sme:SMc04411 putative membrane-bound lytic murein transglycosylase signal peptide protein YP_675880.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_675881.1 KEGG: mlo:mlr4354 hypothetical protein YP_675882.1 PFAM: protein of unknown function DUF1232; KEGG: bmb:BruAb1_0079 hypothetical protein YP_675883.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mlo:mlr4350 pterin-4a-carbinolamine dehydratase YP_675884.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mlo:mll4349 protein-tyrosine-phosphatase YP_675885.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: mlo:mlr4348 ABC transporter (permease) YP_675886.1 PFAM: lipolytic enzyme, G-D-S-L; KEGG: mlo:mlr4347 acyl-CoA thioesterase YP_675887.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll4346 ABC transporter, ATP-binding protein YP_675888.1 PFAM: protein of unknown function DUF214; KEGG: mlo:mll4345 hypothetical protein, hypothetical integral membrane protein YP_675889.1 PFAM: protein of unknown function UPF0005; KEGG: ret:RHE_CH03940 hypothetical protein YP_675890.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4342 phosphinotricin acetyltransferase YP_675891.1 KEGG: mlo:mlr4340 hypothetical protein YP_675892.1 PFAM: protein of unknown function DUF1223; KEGG: mlo:mlr4337 hypothetical protein YP_675893.2 Catalyzes the conversion of citrate to isocitrate YP_675894.1 ATP-binding protein; required for proper cytochrome c maturation YP_675895.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: mlo:mll4332 cytochrome c biogenesis protein CycW YP_675896.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: mlo:mlr8327 heme exporter protein C YP_675897.1 PFAM: Heme exporter protein D (CcmD); KEGG: mlo:msl4331 thioredoxin-related CycX 3' region protein, inner membrane protein YP_675898.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin; KEGG: bmb:BruAb1_0095 CycY, thiol:disulfide interchange protein, thioredoxin family YP_675899.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mlo:mll4109 hypothetical protein YP_675900.1 TIGRFAM: small GTP-binding protein GTP-binding protein TypA; PFAM: elongation factor G-like protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: atc:AGR_C_4827 hypothetical protein YP_675902.1 PFAM: beta-lactamase-like; KEGG: mlo:mll3743 hypothetical protein YP_675903.1 KEGG: mlo:mll3968 hypothetical protein YP_675904.1 PFAM: band 7 protein; KEGG: ret:RHE_PC00075 probable stomatin-like protein YP_675905.1 PFAM: protein of unknown function DUF107; KEGG: sme:SMb20990 probable membrane protein necessary for nodulation competitiveness YP_675906.1 TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta-domain; KEGG: bms:BRA1148 outer membrane autotransporter YP_675907.1 PFAM: protein of unknown function DUF894, DitE major facilitator superfamily MFS_1; KEGG: mlo:mlr4214 integral membrane protein, probable MFS transporter YP_675908.1 PFAM: protein of unknown function YGGT; KEGG: mlo:mll4156 hypothetical protein YP_675909.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory PHA accumulation regulator DNA-binding-like; KEGG: mlo:mll3846 hypothetical protein YP_675910.1 TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; KEGG: mlo:mlr3847 acetyl-CoA acetyltransferase YP_675911.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rsp:RSP_0747 short-chain dehydrogenase/reductase YP_675912.1 PFAM: helicase-like; KEGG: mlo:mlr3852 MgpS, ATP-dependent helicase YP_675913.1 PFAM: RNA-binding S4; KEGG: bmb:BruAb1_1753 S4 domain protein YP_675914.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding; KEGG: mlo:mlr3855 ferredoxin II YP_675915.1 PFAM: transcription factor CarD; KEGG: mlo:mlr3857 transcriptional factor regulator YP_675916.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production YP_675917.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_675918.1 KEGG: ret:RHE_CH01135 hypothetical protein YP_675919.1 KEGG: sme:SMc00030 hypothetical/unknown signal peptide protein YP_675920.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_675921.1 KEGG: mlo:mlr4231 hypothetical protein YP_675922.1 KEGG: rru:Rru_A0163 transcriptional regulator, XRE family YP_675923.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS Xanthine/uracil/vitamin C permease sulphate transporter; KEGG: nwi:Nwi_2065 sulfate transporter/antisigma-factor antagonist STAS YP_675924.1 Involved in cell division; probably involved in intracellular septation YP_675925.1 KEGG: bmb:BruAb1_1910 FtsY, signal recognition particle-docking protein; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G-domain; SMART: ATPase YP_675926.1 KEGG: mlo:mlr4319 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family MiaB-like tRNA modifying enzyme; PFAM: deoxyribonuclease/rho motif-related TRAM protein of unknown function UPF0004 Radical SAM; SMART: Elongator protein 3/MiaB/NifB YP_675927.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_675928.1 PFAM: protein of unknown function DUF1328; KEGG: mlo:msr4317 hypothetical protein YP_675929.1 PFAM: outer membrane lipoprotein omp19; KEGG: sme:SMc02475 putative outer membrane lipoprotein precursor YP_675930.1 PFAM: AFG1-like ATPase; KEGG: mlo:mll4310 hypothetical protein YP_675931.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_675932.1 catalyzes the interconversion of succinyl-CoA and succinate YP_675933.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_675934.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_675935.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_675936.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_675938.1 PFAM: GumN; KEGG: atc:AGR_C_4767 hypothetical protein YP_675939.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_675940.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr3870 ABC transporter, ATP-binding protein YP_675941.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: mlo:mlr3869 hypothetical protein YP_675942.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mll3767 NADPH quinone oxidoreductase YP_675943.1 PFAM: protein of unknown function DUF1192; KEGG: mlo:msr3768 hypothetical protein YP_675944.1 PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr3769 transmembrane transport protein YP_675945.1 PFAM: protein of unknown function DUF465; KEGG: mlo:msl3793 hypothetical protein YP_675946.1 PFAM: protein of unknown function DUF465; KEGG: mlo:msr3794 hypothetical protein YP_675947.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: bmb:BruAb1_1729 PurE, phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_675948.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_675949.1 KEGG: atc:AGR_C_2334 hypothetical protein YP_675950.1 PFAM: protein of unknown function DUF1013; KEGG: bmb:BruAb1_1722 hypothetical protein YP_675951.1 PFAM: nuclease (SNase-like); KEGG: rpa:RPA0032 possible staphylococcal nuclease homologues YP_675952.1 PFAM: protein of unknown function DUF1674; KEGG: sil:SPO3377 hypothetical protein YP_675953.1 putative metalloprotease YP_675954.1 PFAM: Fmu (Sun) NusB/RsmB/TIM44; KEGG: mlo:mlr4098 hypothetical protein, similarity to RNA-binding Sun protein, putative Fmu protein YP_675955.1 PFAM: Heparinase II/III-like; KEGG: mlo:mlr4100 hypothetical protein YP_675956.1 involved in de novo purine biosynthesis YP_675957.1 PFAM: major facilitator superfamily MFS_1; KEGG: jan:Jann_0343 major facilitator superfamily MFS_1 YP_675958.1 PFAM: NAD-glutamate dehydrogenase; KEGG: mlo:mll4104 hypothetical protein YP_675959.1 KEGG: mlo:mll4235 hypothetical protein YP_675960.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mlr4237 two-component response regulator YP_675961.1 PFAM: cyclic nucleotide-binding; KEGG: bmb:BruAb1_1980 cyclic nucleotide-binding protein YP_675962.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_675963.1 KEGG: mlo:mlr5408 hypothetical protein YP_675964.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan YP_675965.1 PFAM: Polyprenyl synthetase; KEGG: mlo:mlr3784 geranyltranstransferase (farnesyl-diphosphate synthase) YP_675966.1 PFAM: Usg-like; KEGG: mlo:mll4088 usg protein - Caulobacter crescentus YP_675967.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_675968.1 PFAM: Helix-turn-helix, type 11; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein) YP_675969.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sil:SPO1915 glyoxalase family protein YP_675970.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: bja:bll6807 dehydrogenase YP_675971.1 KEGG: bmb:BruAb1_1715 hypothetical protein YP_675972.1 PFAM: fructose-bisphosphate aldolase, class-I; KEGG: atc:AGR_L_2190 putative fructose bisphosphate aldolase YP_675973.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_675974.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_675975.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: mlo:mlr3750 glyceraldehyde-3-phosphate dehydrogenase(GAPDH) YP_675976.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_675977.1 KEGG: mlo:msl3747 contains similarity to tropomyosin YP_675978.1 PFAM: protein of unknown function DUF710; KEGG: mlo:mll3746 hypothetical protein YP_675979.1 Essential for efficient processing of 16S rRNA YP_675980.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_675981.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_675982.1 PFAM: MgtC/SapB transporter; KEGG: sme:SMc00799 hypothetical transmembrane protein YP_675983.1 KEGG: mlo:mll4273 hypothetical protein YP_675984.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_675985.1 hydrolyzes diadenosine polyphosphate YP_675986.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: mlo:mll3999 hypothetical protein YP_675987.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF peptidase S41; KEGG: mlo:mll4000 carboxyl-terminal protease YP_675988.1 PFAM: peptidase M23B; KEGG: mlo:mll4002 filament-A precursor [Bartonella bacilliformis] YP_675989.2 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_675990.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mlo:mll4005 hypothetical protein YP_675991.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_675992.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_675993.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_675994.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_675995.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mll4016 acetyltransferase YP_675996.1 involved in the peptidyltransferase reaction during translation YP_675997.1 fusion of ribosomal protein L21 and COG3743 YP_675998.1 PFAM: protein of unknown function DUF72; KEGG: ret:RHE_CH00317 hypothetical protein YP_675999.1 KEGG: sme:SMc01884 hypothetical signal peptide protein YP_676000.1 PFAM: oxidoreductase FAD/NAD(P)-binding Oxidoreductase FAD-binding region; KEGG: mlo:mll4785 NADPH:ferredoxin reductase YP_676001.1 PFAM: protein of unknown function UPF0057; KEGG: atu:Atu0413 stress induced protein YP_676003.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_676004.1 TIGRFAM: parB-like partition proteins; PFAM: ParB-like nuclease; KEGG: mlo:mll4477 chromosome partitioning protein, ParB YP_676005.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: mlo:mll4479 chromosome partitioning protein, ParA YP_676006.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_676007.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_676008.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_676009.1 PFAM: protein of unknown function DUF255; KEGG: mlo:mlr4484 hypothetical protein YP_676010.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_676011.1 PFAM: conserved hypothetical protein 701; KEGG: bmb:BruAb1_2040 hypothetical membrane protein YP_676012.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_676014.1 PFAM: protein of unknown function DUF299; KEGG: mlo:mlr4488 hypothetical protein YP_676015.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_676016.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_676017.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_676018.1 3'-5' exonuclease of DNA polymerase III YP_676019.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_676020.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_676021.1 PFAM: import inner membrane translocase, subunit Tim44; KEGG: bms:BR2074 hypothetical protein YP_676022.1 PFAM: MltA 3D; KEGG: mlo:mlr4546 outer membrane lipoprotein GNA33, membrane-bound lytic murein transglycosylase YP_676023.1 PFAM: Smr protein/MutS2; KEGG: bmb:BruAb1_2051 Smr family protein YP_676024.1 PFAM: helix-turn-helix motif; KEGG: mlo:mlr4548 transcriptional regulator YP_676025.1 KEGG: mlo:mll5001 hypothetical protein YP_676026.1 heat shock protein involved in degradation of misfolded proteins YP_676027.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMc02576 hypothetical acetyltransferase protein YP_676028.1 heat shock protein involved in degradation of misfolded proteins YP_676029.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_676030.1 KEGG: mlo:mlr5010 hypothetical protein YP_676031.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_676032.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_676033.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_676034.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_676035.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_676036.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: mlo:mlr5099 alkylated DNA repair protein YP_676037.1 PFAM: Class I peptide chain release factor; KEGG: mlo:mlr5097 hypothetical protein YP_676038.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_676039.1 PFAM: luciferase-like; KEGG: sil:SPO2518 bacterial luciferase family protein YP_676040.1 KEGG: noc:Noc_0305 hypothetical protein YP_676041.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_676042.1 KEGG: sme:SMb20414 hypothetical protein YP_676043.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: ret:RHE_PF00134 putative nucleoside-diphosphate-sugar epimerase protein YP_676044.1 PFAM: Rieske [2Fe-2S] region FAD dependent oxidoreductase; KEGG: cef:CE2887 hypothetical protein YP_676045.1 KEGG: tfu:Tfu_0892 hypothetical protein YP_676046.1 KEGG: sme:SMb21362 hypothetical membrane-anchored protein YP_676047.1 KEGG: sme:SMb21361 hypothetical membrane-anchored protein YP_676048.1 KEGG: sme:SMb20339 hypothetical protein YP_676049.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase glucose-inhibited division protein A HI0933-like protein FAD dependent oxidoreductase; KEGG: xcv:XCV3947 putative NADH dehydrogenase YP_676050.1 KEGG: xcb:XC_2191 fatty acid alpha hydroxylase YP_676051.1 KEGG: ret:RHE_PF00059 hypothetical protein YP_676052.1 PFAM: protein of unknown function DUF892; KEGG: xac:XAC2155 hypothetical protein YP_676053.1 KEGG: stm:STM1051 secreted effector protein YP_676054.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: sme:SMc01200 hypothetical protein YP_676055.1 KEGG: sme:SMc01202 putative lipoprotein YP_676056.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sme:SMc01203 hypothetical protein YP_676057.1 KEGG: bja:blr5705 hypothetical protein YP_676058.1 PFAM: short-chain dehydrogenase/reductase SDR SEC-C motif; KEGG: sme:SMc01204 putative transmembrane oxidoreductase protein oxidoreductase YP_676059.1 PFAM: Allergen V5/Tpx-1 related; KEGG: tel:tll1411 hypothetical protein YP_676061.1 PFAM: Pyrrolo-quinoline quinone; KEGG: ilo:IL0790 glucose dehydrogenase YP_676062.1 PFAM: protein of unknown function DUF892; KEGG: rpa:RPA3726 hypothetical protein YP_676063.1 KEGG: sme:SMc01448 hypothetical protein YP_676064.1 PFAM: Erythromycin esterase; KEGG: ppu:PP3231 hypothetical protein YP_676065.1 PFAM: beta-lactamase-like; KEGG: dra:DR0658 hypothetical protein YP_676066.1 PFAM: phosphoribosyltransferase; KEGG: sme:SMc01463 hypothetical protein YP_676067.1 KEGG: reu:Reut_B4443 hypothetical protein YP_676068.1 TIGRFAM: outer membrane autotransporter barrel domain autotransporter-associated beta strand repeat protein; PFAM: Pertactin Autotransporter beta-domain; KEGG: bmb:BruAb2_1085 outer membrane autotransporter YP_676069.1 PFAM: cytochrome C oxidase subunit IV; KEGG: psp:PSPPH_1213 cytochrome o ubiquinol oxidase, subunit IV YP_676070.1 PFAM: cytochrome c oxidase, subunit III; KEGG: sgl:SG0665 cytochrome o ubiquinol oxidase subunit III YP_676071.1 PFAM: cytochrome c oxidase, subunit I; KEGG: bbr:BB1284 ubiquinol oxidase polypeptide I YP_676072.1 TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II COX aromatic rich; KEGG: pfl:PFL_4735 cytochrome o ubiquinol oxidase, subunit II YP_676073.1 PFAM: Cupin 2, conserved barrel; KEGG: bja:bll6423 hypothetical protein YP_676074.1 PFAM: HpcH/HpaI aldolase; KEGG: cpe:CPE1148 citrate lyase beta subunit YP_676075.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BG10657 aliphatic sulfonates transport system permease protein YP_676076.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:bll6089 ABC transporter permease protein YP_676077.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: bbr:BB1072 ATP-binding component of ABC transporter YP_676078.1 PFAM: NLPA lipoprotein; KEGG: tcx:Tcr_1800 NlpA lipoprotein YP_676079.1 activates fatty acids by binding to coenzyme A YP_676080.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bbr:BB2352 probable LysR-family transcription regulator YP_676081.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BR0244 fumarylacetoacetate hydrolase family protein YP_676082.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: bmb:BruAb1_0238 oxidoreductase, short chain dehydrogenase/reductase family YP_676083.1 PFAM: General substrate transporter major facilitator superfamily MFS_1; KEGG: cdi:DIP2166 putative ABC transport system permease protein YP_676084.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: bbr:BB4684 putative malate/L-lactate dehydrogenase YP_676085.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: mlo:mll7149 mandelate racemase YP_676086.1 KEGG: major facilitator family transporter YP_676087.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: sme:SMa0267 putative GntR-family regulator YP_676088.1 PFAM: Endoribonuclease L-PSP; KEGG: cps:CPS_2046 endoribonuclease, L-PSP family YP_676089.1 PFAM: sugar isomerase (SIS); KEGG: rsp:RSP_1447 possible glucosamine--fructose-6-phosphate aminotransferase (isomerizing) YP_676090.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: rsp:RSP_1446 putative sugar kinase YP_676091.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: rsp:RSP_1445 ABC sugar transporter, ATPase subunit YP_676092.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1444 ABC sugar transporter, inner membrane subunit YP_676093.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_1443 ABC sugar transporter, inner membrane subunit YP_676094.1 PFAM: extracellular solute-binding protein, family 1; KEGG: rsp:RSP_1442 ABC sugar transporter, periplasmic sugar-binding protein YP_676095.1 PFAM: ROK domain containing protein; KEGG: rsp:RSP_1441 regulatory protein, GntR family YP_676096.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: jan:Jann_2909 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_676097.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: glutathione S-transferase-like; KEGG: mlo:mlr1135 maleylacetoacetate isomerase YP_676098.1 PFAM: regulatory protein, MarR; KEGG: bja:bll4221 transcriptional regulatory protein YP_676099.1 PFAM: Cupin 2, conserved barrel; KEGG: jan:Jann_2910 cupin 2 protein YP_676100.1 KEGG: cgb:cg3349 hypothetical protein YP_676101.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif HhH-GPD; KEGG: mlo:mll3176 endonuclease III YP_676102.1 KEGG: mlo:mlr3177 hypothetical protein YP_676103.1 KEGG: mlo:mlr3180 O6-methylguanine-DNA methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; SMART: Helix-turn-helix, AraC type YP_676104.1 PFAM: PfkB; KEGG: mlo:mlr3185 ribokinase YP_676105.1 PFAM: response regulator receiver transcriptional regulatory protein-like; KEGG: mlo:mll5095 two-component system response regulator YP_676106.1 PFAM: ATP-binding region, ATPase-like histidine kinase, HAMP region histidine kinase A-like; KEGG: mlo:mll5094 two-component sensor histidine kinase ExoS YP_676107.1 KEGG: mlo:mll5093 hypothetical protein YP_676108.1 PFAM: PTS system fructose subfamily IIA component; KEGG: mlo:mll5091 fructose-specific IIA component YP_676109.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: mlo:msl5090 phosphocarrier protein HPr YP_676110.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_676111.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; SMART: PAS; KEGG: mlo:mll5087 two-component sensor histidine kinase YP_676112.1 PFAM: aminoglycoside phosphotransferase protein of unknown function UPF0079; KEGG: mlo:mll5086 hypothetical protein YP_676113.1 PFAM: Nucleotidyl transferase; KEGG: mlo:mll5085 hypothetical protein YP_676114.1 KEGG: mlo:mll5084 hypothetical protein YP_676115.1 PFAM: UvrD/REP helicase; KEGG: mlo:mll5083 ATP-dependent nuclease subunit A YP_676116.1 TIGRFAM: thioredoxin; PFAM: glutaredoxin Thioredoxin domain; KEGG: atc:AGR_C_37 thioredoxin C-1 YP_676117.1 KEGG: bms:BR2132 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit ATPase associated with various cellular activities, AAA_5; SMART: ATPase YP_676118.1 KEGG: mta:Moth_2408 methicillin resistance protein YP_676119.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_676120.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: mlo:mlr4740 contains partial similarity to sensory box/GGDEF family protein(transmembrane protein) YP_676121.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr4741 short chain dehydrogenase/reductase YP_676122.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bme:BMEI1997 gluconolactonase YP_676123.1 PFAM: aldehyde dehydrogenase; KEGG: bmb:BruAb2_1092 aldehyde dehydrogenase family protein YP_676124.1 PFAM: thiamine pyrophosphate enzyme-like TPP-binding thiamine pyrophosphate enzyme, central region thiamine pyrophosphate enzyme-like TPP binding region; KEGG: ret:RHE_PF00274 acetolactate synthase, large subunit protein (thiamine pyrophosphate-dependent enzyme) YP_676125.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_676126.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_676127.1 PFAM: ABC transporter, transmembrane region ABC transporter related; SMART: ATPase; KEGG: mlo:mlr4641 ABC transporter, ATP-binding protein YP_676128.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate YP_676129.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_676130.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_676131.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mlo:mlr4637 hypothetical protein YP_676132.1 PFAM: HEAT domain containing protein 4Fe-4S ferredoxin, iron-sulfur binding Domain of unknown function DUF1730; KEGG: mlo:mlr4636 iron-sulfur cluster binding protein YP_676133.1 PFAM: glutathione S-transferase-like; KEGG: mlo:mlr4635 glutathione S-transferase YP_676134.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_676135.1 PFAM: protein of unknown function DUF81; KEGG: ilo:IL2350 predicted permease YP_676136.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: mlo:mll5193 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex YP_676137.1 negatively supercoils closed circular double-stranded DNA YP_676138.1 PFAM: SlyX; KEGG: mlo:msl3152 similar to slyX protein - Escherichia coli (host factor for lysis of phiX174 infection) YP_676139.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL; KEGG: rpa:RPA3219 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) YP_676140.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_676141.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_676142.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbr:BB1305 putative oxidoreductase YP_676143.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_676144.1 TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr5215 hypothetical protein YP_676145.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: psp:PSPPH_3616 S/N-oxide reductase, molybdopterin guanine dinucleotide-containing YP_676146.1 KEGG: bja:bll4710 hypothetical protein YP_676147.1 PFAM: regulatory proteins, IclR; KEGG: atc:AGR_L_119 hypothetical protein YP_676148.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:blr4511 probable ABC transporter substrate-binding protein YP_676149.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: atc:AGR_L_113 hypothetical protein YP_676150.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sme:SMc00264 putative oxidoreductase protein YP_676151.1 PFAM: Transketolase-like; KEGG: mlo:mll5765 transketolase YP_676152.1 PFAM: Transketolase, central region Transketolase-like; KEGG: psp:PSPPH_1255 transketolase, C-terminal subunit, putative YP_676153.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_126 hypothetical protein YP_676154.1 PFAM: Mandelate racemase/muconate lactonizing enzyme-like; KEGG: pfo:Pfl_2774 mandelate racemase/muconate lactonizing enzyme YP_676155.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_676156.1 PFAM: fumarate lyase; KEGG: bja:bll7942 probable 3-carboxy-cis,cis-muconate cycloisomerase YP_676157.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bha:BH0601 hypothetical protein YP_676158.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: jan:Jann_1727 TRAP transporter, 4TM/12TM fusion protein YP_676159.1 PFAM: regulatory protein GntR, HTH UbiC transcription regulator-associated; KEGG: ppu:PP2066 transcriptional regulator, GntR family YP_676160.1 PFAM: aminotransferase, class I and II; KEGG: sme:SMc04386 aspartate aminotransferase B protein YP_676161.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mll2867 aldehyde dehydrogenase YP_676162.1 PFAM: protein of unknown function DUF1338; KEGG: sme:SMc04383 hypothetical protein YP_676163.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: mag:amb1294 cystathionine beta-lyase/cystathionine gamma-synthase YP_676164.1 PFAM: Rhodanese-like; KEGG: cfa:474515 similar to 3-mercaptopyruvate sulfurtransferase YP_676165.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_676166.1 KEGG: mlo:mll7347 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_676167.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH130 oligopeptide ABC transporter permease protein YP_676168.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMa0300 ABC transporter, permease YP_676169.1 PFAM: extracellular solute-binding protein, family 5; KEGG: ret:RHE_PC00130 probable peptide ABC transporter, substrate-binding protein YP_676170.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mll7022 sarcosine oxidase, subunit beta YP_676171.1 PFAM: BFD-like [2Fe-2S]-binding region FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nar:Saro_2940 BFD-like (2Fe-2S)-binding protein YP_676172.1 KEGG: mlo:mlr7027 hypothetical protein YP_676173.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB0583 crotonobetaine/carnitine-CoA ligase YP_676174.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A1906 enoyl-CoA hydratase/isomerase YP_676175.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3343 ABC transporter permease protein YP_676176.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3342 ABC transporter permease protein YP_676177.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: rpb:RPB_1226 extracellular solute-binding protein, family 5 YP_676178.1 KEGG: bbr:BB1105 hypothetical protein YP_676179.1 PFAM: regulatory proteins, IclR; KEGG: reu:Reut_D6477 regulatory protein, IclR YP_676180.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: bja:bll6709 probable ATP-binding protein YP_676181.1 KEGG: mlo:msr8070 hypothetical protein YP_676182.1 KEGG: ret:RHE_CH01473 hypothetical protein YP_676183.1 PFAM: protein of unknown function DUF1470; KEGG: ade:Adeh_3376 protein of unknown function DUF1470 YP_676184.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ret:RHE_PC00206 hypothetical protein YP_676185.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mlr3154 sugar ABC transporter, ATP-binding protein YP_676186.1 PFAM: inner-membrane translocator; KEGG: sme:SMc04126 putative transport system permease ABC transporter protein YP_676187.1 PFAM: inner-membrane translocator; KEGG: mlo:mlr3157 sugar ABC transporter, permease protein YP_676188.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_676189.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_676190.1 Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate YP_676191.1 PFAM: phosphoribosyltransferase; KEGG: mlo:mll3162 uracil phosphoribosyltransferase YP_676192.1 catalyzes the formation of inosine from adenosine YP_676193.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; KEGG: mlo:mll4973 hypothetical protein, contains similarity to HisP-like nucleotide binding protein (phnN) YP_676194.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase Amidohydrolase 3; KEGG: mlo:mll4974 hypothetical protein YP_676195.1 PFAM: protein of unknown function DUF1045; KEGG: mlo:mll4975 contains weak similarity to xylose isomerase YP_676196.1 PFAM: heat shock protein Hsp20; KEGG: mlo:mlr3192 small heat shock protein HspH YP_676197.1 PFAM: protein of unknown function DUF1150; KEGG: mlo:msr3193 contains weak similarity to NADH oxidase YP_676198.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: mlo:mll3194 phosphotransferase system enzyme II YP_676199.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: mlo:mll3195 sigma-54 modulation protein YP_676200.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_676201.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: mlo:mll3197 ABC transporter ATP-binding protein (in RpoN upstream) YP_676202.1 PFAM: OstA-like protein; KEGG: mlo:mll3198 hypothetical protein YP_676203.1 KEGG: mlo:mll3200 hypothetical protein YP_676204.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: mlo:mlr3201 protease IV YP_676205.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone-like DNA-binding protein; KEGG: mlo:msr3202 integration host factor beta chain YP_676206.1 KEGG: mlo:mlr3203 hypothetical protein YP_676207.1 KEGG: mlo:mlr3204 ornithine cyclodeaminase YP_676208.1 KEGG: sme:SMb20927 hypothetical protein YP_676209.1 PFAM: conserved hypothetical protein 95; KEGG: mlo:mlr3209 SAM dependent methyltransferase YP_676210.1 PFAM: tRNA/rRNA methyltransferase (SpoU) RNA 2-O ribose methyltransferase, substrate binding; KEGG: mlo:mlr3210 rRNA methylase YP_676211.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_676212.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: mlo:mlr3212 dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH quinone oxidoreductase, oxidoreductase) YP_676213.1 KEGG: mlo:mlr3215 two-component sensor/response regulator hybrid; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like PAS fold-4; SMART: PAS YP_676214.1 KEGG: mlo:mlr3216 hypothetical protein YP_676215.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_PB00044 putative short chain oxidoreductase protein YP_676216.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: rsp:RSP_3104 putative glutathione-dependent formaldehyde dehydrogenase YP_676217.1 PFAM: cyclase/dehydrase; KEGG: rsp:RSP_3103 hypothetical protein YP_676218.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2310 short chain dehydrogenase YP_676219.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: sme:SMb20099 putative trehalose synthase protein YP_676220.1 PFAM: alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rpa:RPA4759 glycosyl hydrolase, family 13 YP_676221.1 PFAM: oxidoreductase-like dihydrodipicolinate reductase homoserine dehydrogenase, NAD-binding; KEGG: mlo:mll3630 unknown conserved protein, weak simirarity to homoserine dehydrogenase YP_676222.1 PFAM: helix-turn-helix, AraC type; KEGG: mlo:mll2850 hypothetical protein YP_676223.1 PFAM: protein of unknown function DUF1428; KEGG: mlo:mlr2642 hypothetical protein YP_676224.1 PFAM: Amylo-alpha-1,6-glucosidase; KEGG: nwi:Nwi_2111 amylo-alpha-1,6-glucosidase YP_676225.1 PFAM: glycosyl transferase, group 1; KEGG: ret:RHE_CH01241 putative glycosyltransferase protein YP_676226.1 PFAM: ABC-2 type transporter; KEGG: neu:NE0472 ABC 2 transport system integral membrane protein YP_676227.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: pst:PSPTO1075 O-antigen ABC transporter, ATP-binding protein, putative YP_676228.1 PFAM: Methyltransferase type 11 Methyltransferase type 12; KEGG: ade:Adeh_2459 methyltransferase type 11 YP_676229.1 PFAM: glycosyl transferase, group 1; KEGG: mma:MM1142 glycosyltransferase YP_676230.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: neu:NE0486 UDP-N-acetylglucosamine 2-epimerase YP_676231.1 PFAM: glycosyl transferase, family 2; KEGG: oih:OB2925 teichuronic acid biosynthesis YP_676232.1 KEGG: ttj:TTHA0647 putative glycosyltransferase YP_676233.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: gox:GOX1793 transcriptional regulator YP_676234.1 PFAM: Alcohol dehydrogenase, zinc-binding Alcohol dehydrogenase GroES-like; KEGG: oih:OB2752 sorbitol dehydrogenase YP_676235.1 PFAM: helix-turn-helix protein RpiR sugar isomerase (SIS); KEGG: hch:HCH_05772 transcriptional regulator YP_676236.1 PFAM: PfkB; KEGG: plu:plu1801 unnamed protein product; similar to myo-inositol catabolism protein IolC of Bacillus subtilis YP_676237.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR Insect alcohol dehydrogenase family; KEGG: gka:GK1683 short chain dehydrogenase YP_676238.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMb20856 putative sugar uptake ABC transporter periplasmic solute-binding protein precursor YP_676239.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMb20855 putative sugar uptake ABC transporter ATP-binding protein YP_676240.1 PFAM: inner-membrane translocator; KEGG: sme:SMb20854 putative sugar uptake ABC transporter permease protein YP_676241.1 PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: ccr:CC2642 choline dehydrogenase YP_676242.1 KEGG: mlo:mll4958 hypothetical protein YP_676244.1 PFAM: NADPH-dependent FMN reductase; KEGG: sma:SAV3813 putative NADPH-dependent FMN reductase YP_676245.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mpa:MAP2526c hypothetical protein YP_676246.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bbr:BB2984 hypothetical protein YP_676247.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO3664 hypothetical protein YP_676248.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bbr:BB2985 hypothetical protein YP_676249.1 PFAM: Cupin Cupin 2, conserved barrel; KEGG: hma:rrnB0187 putative cupin YP_676250.1 PFAM: Xylose isomerase-like TIM barrel YP_676251.1 KEGG: ctc:CTC01793 transcriptional regulator YP_676252.1 PFAM: protein of unknown function UPF0261; KEGG: hma:rrnB0188 hypothetical protein YP_676253.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: mta:Moth_0073 transcriptional regulator, GntR family YP_676254.1 PFAM: luciferase-like; KEGG: mpa:MAP0445c hypothetical protein YP_676255.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rso:RS04822 probable transcription regulator protein YP_676256.1 KEGG: gga:424836 similar to chromosome 21 open reading frame 29; TSP-EAR YP_676257.1 KEGG: lpp:lpp1962 hypothetical protein YP_676258.1 PFAM: HpcH/HpaI aldolase; KEGG: bbr:BB1049 putative aldolase YP_676259.1 PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein YP_676260.1 KEGG: eba:ebA5654 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_676261.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5655 putative peptide ABC transporter permease protein YP_676262.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5658 putative peptide ABC transporter permease protein YP_676263.1 PFAM: extracellular solute-binding protein, family 5; KEGG: eba:ebA5660 probable ABC transporter substrate binding protein YP_676264.1 PFAM: Hydantoinase/oxoprolinase Hydantoinaseoxoprolinase-like; KEGG: bld:BLi00395 putative N-methylhydantoinase A; RBL01743 YP_676265.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: bld:BLi00396 putative N-methylhydantoinase B; RBL01742 YP_676267.1 PFAM: glucose-methanol-choline oxidoreductase GMC oxidoreductase; KEGG: sme:SMc03116 putative alcohol dehydrogenase protein YP_676269.1 PFAM: aminotransferase, class I and II; KEGG: dde:Dde_0276 aminotransferase, classes I and II YP_676270.1 PFAM: extracellular solute-binding protein, family 5; KEGG: reu:Reut_A3006 extracellular solute-binding protein, family 5 YP_676271.1 KEGG: tfu:Tfu_1630 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase YP_676272.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3659 oligopeptide ABC transporter permease YP_676273.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7564 putative oligopeptide ABC transporter integral membrane protein YP_676274.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family YP_676275.1 PFAM: molybdopterin oxidoreductase molydopterin dinucleotide-binding region; KEGG: bbr:BB1545 putative biotin sulfoxide reductase YP_676276.1 KEGG: tfu:Tfu_0280 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related Transport-associated OB; SMART: ATPase YP_676277.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: bld:BLi00397 putative spermidine/putrescine-binding periplasmic protein 2 precursor; RBL01741 YP_676278.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_3517 ABC polyamine/opine transporter, inner membrane subunit YP_676279.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi00400 putative spermidineputrescine ABC transporter permease protein; RBL01738 YP_676280.1 PFAM: Rhodanese-like; KEGG: bms:BR1055 rhodanese family protein YP_676281.1 KEGG: bbr:BB0389 4,5-dihydroxyphthalate decarboxylase YP_676283.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB4884 putative dehydratase/racemase YP_676284.1 PFAM: Enoyl-CoA hydratase/isomerase 3-hydroxyacyl-CoA dehydrogenase-like 6-phosphogluconate dehydrogenase, NAD-binding 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bpm:BURPS1710b_0633 enoyl-CoA hydratase/isomerase/3-hydroxyacyl-CoA dehydrogenase YP_676285.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_676286.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sme:SMb20113 putative dehydrogenase protein YP_676287.1 PFAM: glucose-methanol-choline oxidoreductase FAD dependent oxidoreductase GMC oxidoreductase; KEGG: jan:Jann_3680 glucose-methanol-choline oxidoreductase YP_676288.1 PFAM: flavin reductase-like, FMN-binding; KEGG: reu:Reut_A1544 flavin reductase-like, FMN-binding YP_676289.1 PFAM: amidohydrolase 2; KEGG: pfl:PFL_3557 transcriptional regulator, GntR family/amidohydrolase family protein YP_676290.1 catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate YP_676291.1 PFAM: dihydrodipicolinate synthetase; KEGG: jan:Jann_3748 dihydrodipicolinate synthetase YP_676292.1 PFAM: regulatory protein GntR, HTH; KEGG: mlo:mlr2114 probable transcriptional regulator YP_676293.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mca:MCA0351 carboxymuconolactone decarboxylase domain protein YP_676294.1 PFAM: Dak kinase; KEGG: mlo:mlr9018 putative glycerone kinase YP_676295.1 PFAM: Dak phosphatase; KEGG: bcl:ABC3609 dihydroxyacetone kinase YP_676296.1 PFAM: aldo/keto reductase; KEGG: mlo:mll8386 oxido-reductase, and dehydratase MocA YP_676298.1 PFAM: luciferase-like; KEGG: aci:ACIAD2543 conserved hypothetical protein; putative monooxygenase oxidoreductase protein YP_676299.1 PFAM: aldehyde dehydrogenase; KEGG: pub:SAR11_0766 succinate-semialdehyde dehydrogenase (NAD(P)) YP_676300.1 PFAM: helix-turn-helix, AraC type ThiJ/PfpI; KEGG: rpb:RPB_1140 transcriptional regulator, AraC family YP_676301.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: ret:RHE_PF00090 probable sugar ABC transporter, ATP-binding protein YP_676302.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR YP_676303.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: bja:bll6697 putative glconolactonase YP_676304.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bmb:BruAb2_0484 sugar ABC transporter, periplasmic sugar-binding protein YP_676305.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO0539 probable sugar transporter membrane protein YP_676306.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll0851 putative multiple sugar transport system permease protein YP_676307.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr2780 3-ketoacyl-CoA reductase PhaB YP_676309.1 PFAM: putative sugar-binding region; KEGG: mlo:mll4931 transcriptional regulator, operon regulator; SmoC YP_676310.1 PFAM: extracellular solute-binding protein, family 1; KEGG: sme:SMc01496 probable sorbitol-binding periplasmic protein YP_676311.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_839 maltose transport inner membrane protein YP_676312.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll4924 sorbitol/mannitol transport inner membrane protein YP_676313.1 PFAM: ABC transporter related TOBE Transport-associated OB; SMART: ATPase; KEGG: mlo:mll4923 unknown protein YP_676314.1 Converts D-sorbitol to L-sorbose YP_676315.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cme:CMR373C 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase Pfam: adh_short PROSITE: ADH_SHORT YP_676316.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; KEGG: atc:AGR_L_828 hypothetical protein YP_676317.1 TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mll4918 ribitol kinase YP_676318.1 PFAM: Rhodanese-like; KEGG: sme:SMb21549 putative exported sulfurtransferase, rhodanese protein YP_676319.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sme:SMb21550 hypothetical protein YP_676320.1 KEGG: sme:SMa2299 hypothetical protein YP_676321.1 KEGG: nwi:Nwi_0727 hypothetical protein YP_676322.1 PFAM: Relaxase/mobilization nuclease domain; KEGG: nwi:Nwi_0728 hypothetical protein YP_676326.1 PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_0255 antirestriction protein YP_676327.1 PFAM: AAA ATPase, central region; SMART: ATPase; KEGG: pfo:Pfl_5696 AAA ATPase, central region YP_676328.1 KEGG: pfo:Pfl_5697 hypothetical protein YP_676331.1 PFAM: putative RNA methylase; KEGG: bca:BCE5606 modification methylase, putative YP_676332.1 PFAM: putative RNA methylase; KEGG: bca:BCE5606 modification methylase, putative YP_676337.1 PFAM: Resolvase-like; KEGG: nwi:Nwi_0737 resolvase YP_676338.1 PFAM: phage integrase; KEGG: nar:Saro_0255 phage integrase YP_676339.1 KEGG: sme:SMa0888 hypothetical protein YP_676340.1 KEGG: atc:AGR_L_3171 hypothetical protein YP_676341.1 KEGG: ret:RHE_PF00152 DNA polymerase III alpha subunit protein; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP-like nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Phosphoesterase PHP-like YP_676342.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_676344.1 PFAM: protein of unknown function DUF159; KEGG: ret:RHE_PF00147 hypothetical protein YP_676346.1 PFAM: Domain of unknown function DUF1738; KEGG: nwi:Nwi_2121 antirestriction protein; ArdC YP_676347.1 KEGG: nwi:Nwi_2122 hypothetical protein YP_676348.1 KEGG: rme:Rmet_6247 hypothetical protein YP_676349.1 KEGG: bfs:BF0671 hypothetical protein YP_676350.1 KEGG: nha:Nham_4481 hypothetical protein YP_676351.1 KEGG: nwi:Nwi_2123 hypothetical protein YP_676352.1 KEGG: ret:RHE_PA00144 hypothetical protein YP_676353.1 KEGG: nwi:Nwi_2127 hypothetical protein YP_676354.1 PFAM: Antirestriction protein; KEGG: sme:SMa0900 possible anti-restriction protein YP_676357.1 KEGG: nwi:Nwi_2125 hypothetical protein YP_676359.1 KEGG: nwi:Nwi_2126 hypothetical protein YP_676360.1 KEGG: nwi:Nwi_2128 probably methylase/helicase YP_676361.1 KEGG: nwi:Nwi_2129 hypothetical protein YP_676362.1 KEGG: nwi:Nwi_2130 hypothetical protein YP_676363.1 KEGG: nwi:Nwi_2132 hypothetical protein YP_676364.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: eli:ELI_14670 single-strand binding protein YP_676366.1 KEGG: mlo:msr9708 hypothetical protein YP_676367.1 KEGG: ret:RHE_CH00634 hypothetical protein YP_676368.1 KEGG: nwi:Nwi_0844 hypothetical protein YP_676369.1 KEGG: mlo:msr9733 hypothetical protein YP_676370.1 KEGG: mlo:mlr9734 hypothetical protein YP_676371.1 PFAM: protein of unknown function DUF891; KEGG: xfa:XF1678 hypothetical protein YP_676372.1 KEGG: eba:ebA101 hypothetical protein YP_676373.1 KEGG: mlo:msr9739 hypothetical protein YP_676374.1 KEGG: bja:bll0051 replication protein A YP_676375.1 KEGG: bja:bll0048 hypothetical protein YP_676376.1 PFAM: DNA methylase N-4/N-6; KEGG: nwi:Nwi_0847 DNA methylase N-4/N-6 YP_676377.1 KEGG: nwi:Nwi_0849 conjugal transfer protein precursor YP_676378.1 KEGG: mlo:mlr9743 hypothetical protein YP_676379.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bja:bll0045 probable transglycosylase YP_676380.1 KEGG: rru:Rru_A0816 hypothetical protein YP_676381.1 type IV secretion VirD4 coupling protein family YP_676382.1 KEGG: rru:Rru_A0811 helix-turn-helix protein, CopG YP_676383.1 PFAM: type II secretion system protein E; KEGG: rpa:RPA4124 conjugal transfer protein trbB YP_676384.1 PFAM: Conjugal transfer protein TrbC; KEGG: nar:Saro_0317 conjugal transfer protein TrbC YP_676385.1 KEGG: rru:Rru_A0806 conjugal transfer protein YP_676386.1 type IV secretion system VirB4 family YP_676387.1 KEGG: mlo:mll9607 conjugal transfer protein trbJ YP_676388.1 KEGG: nar:Saro_0313 hypothetical protein YP_676389.1 type IV secretion VirB6 family YP_676390.1 PFAM: Conjugal transfer protein; KEGG: nwi:Nwi_2093 conjugal transfer protein YP_676391.1 PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bja:blr1619 conjugal transfer protein YP_676392.1 PFAM: conjugation TrbI-like protein; KEGG: mlo:mll9603 conjugal transfer protein trbI YP_676393.1 KEGG: rso:RSc2574 hypothetical/unknown protein YP_676394.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: rpa:RPA4114 transcriptional regulator, LysR family YP_676395.1 PFAM: sigma-70 region 2 Sigma-70, region 4 type 2; KEGG: dar:Daro_2950 sigma-70 region 2 YP_676396.1 PFAM: protein of unknown function DUF6, transmembrane Protein of unknown function DUF250; KEGG: nfa:pnf1290 putative membrane protein YP_676397.1 PFAM: cyclic nucleotide-binding regulatory protein, Crp; KEGG: rsp:RSP_1953 transcriptional regulator, CRP/FNR family YP_676400.1 PFAM: protein of unknown function DUF305; KEGG: mlo:mlr5326 hypothetical protein YP_676401.1 KEGG: ana:asl7591 hypothetical protein YP_676402.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: bja:bll7991 hypothetical protein YP_676403.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase Methyltransferase type 11 Methyltransferase type 12; KEGG: rpa:RPA3082 cyclopropane-fatty-acyl-phospholipid synthase YP_676404.1 KEGG: tbd:Tbd_1323 hypothetical protein YP_676405.1 PFAM: protein of unknown function DUF305; KEGG: eca:ECA0660 hypothetical protein YP_676406.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_676407.1 PFAM: UspA; KEGG: rsp:RSP_3980 universal stress protein (Usp) YP_676408.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase E1-E2 ATPase-associated region; KEGG: tbd:Tbd_2740 heavy metal translocating P-type ATPase YP_676409.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_676410.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: pae:PA3613 hypothetical protein YP_676411.1 PFAM: beta-lactamase-like RNA-metabolising metallo-beta-lactamase; KEGG: bpe:BP2609 metallo-beta-lactamase family protein YP_676412.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_676414.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: multicopper oxidase, type 1 multicopper oxidase, type 2 multicopper oxidase, type 3; KEGG: lpn:lpg0265 multicopper oxidase YP_676416.1 catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis YP_676417.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: ABC-1; KEGG: pca:Pcar_2342 ubiquinone biosynthesis protein AarF, putative YP_676418.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: reu:Reut_A2710 phospholipase D/Transphosphatidylase YP_676419.1 KEGG: sil:SPO3275 membrane protein, putative YP_676420.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: bur:Bcep18194_A3918 D-isomer specific 2-hydroxyacid dehydrogenase YP_676421.1 PFAM: CBS domain containing protein; KEGG: sme:SMa1086 hypothetical protein YP_676422.1 TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; KEGG: eba:ebA6232 starch phosphorylase YP_676423.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF411; KEGG: reu:Reut_A2485 protein of unknown function DUF411 YP_676424.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family YP_676425.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC copper ion binding protein copper-translocating P-type ATPase heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase-like hydrolase Heavy metal transport/detoxification protein E1-E2 ATPase-associated region; KEGG: xcv:XCV2336 copper-translocating P-type ATPase YP_676426.1 PFAM: Heavy metal transport/detoxification protein; KEGG: reu:Reut_A3377 heavy metal transport/detoxification protein YP_676427.1 PFAM: protein of unknown function DUF305; KEGG: sme:SMc00921 hypothetical signal peptide protein YP_676428.1 PFAM: protein of unknown function DUF305; KEGG: ret:RHE_CH03397 hypothetical protein YP_676429.1 PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase dTDP-4-dehydrorhamnose reductase NmrA-like Male sterility-like; KEGG: ade:Adeh_3216 NAD-dependent epimerase/dehydratase YP_676430.1 KEGG: ade:Adeh_3220 hypothetical protein YP_676431.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: mba:Mbar_A0781 hypothetical protein YP_676432.1 PFAM: aldo/keto reductase; KEGG: ade:Adeh_3218 aldo/keto reductase YP_676433.1 PFAM: NAD-dependent epimerase/dehydratase short-chain dehydrogenase/reductase SDR; KEGG: ret:RHE_CH00289 probable short-chain dehydrogenase protein YP_676434.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3217 short-chain dehydrogenase/reductase SDR YP_676435.1 PFAM: aldo/keto reductase; KEGG: ecc:c0413 putative aldo/keto reductase YP_676436.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: aldo/keto reductase; KEGG: ade:Adeh_3215 aldo/keto reductase YP_676437.1 PFAM: regulatory protein, LysR LysR, substrate-binding; KEGG: bja:blr5548 transcriptional regulatory protein YP_676438.1 KEGG: bja:blr4804 probable phospholipid N-methyltransferase YP_676439.1 KEGG: mba:Mbar_A0780 hypothetical protein YP_676440.1 KEGG: nmu:Nmul_A2484 hypothetical protein YP_676441.1 PFAM: Cupin 2, conserved barrel; KEGG: bmb:BruAb2_0756 hypothetical protein YP_676442.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll4600 4-carboxymuconolactone decarboxylase, putative YP_676443.1 KEGG: ade:Adeh_3213 hypothetical protein YP_676444.1 KEGG: ypm:YP1844 hypothetical protein YP_676447.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_676448.1 PFAM: peptidase M22, glycoprotease; KEGG: mlo:mlr5530 hypothetical protein YP_676449.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mlo:mlr5531 peptide N-acetyltransferase YP_676450.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mlo:mlr5533 hypothetical protein YP_676451.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_676452.1 PFAM: PhoH-like protein KH, type 1; KEGG: mlo:mlr5535 phosphate starvation-induced protein phoH YP_676453.1 PFAM: protein of unknown function UPF0054; KEGG: mlo:mlr5536 hypothetical protein YP_676454.1 PFAM: CBS domain containing protein transporter-associated region; KEGG: mlo:mlr5537 hemolysin YP_676455.1 PFAM: helix-turn-helix motif; KEGG: atc:AGR_C_630 hypothetical protein YP_676456.2 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_676457.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_676459.1 PFAM: protein of unknown function DUF150; KEGG: mlo:mlr5550 hypothetical protein YP_676460.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_676461.1 PFAM: protein of unknown function DUF448; KEGG: mlo:mlr5553 hypothetical protein YP_676462.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_676463.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_676464.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_676465.1 PFAM: HWE histidine kinase; KEGG: sme:SMc00322 hypothetical protein YP_676466.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_676467.1 PFAM: 3' exoribonuclease RNA binding S1 KH, type 1; SMART: KH; KEGG: bmb:BruAb1_2142 Pnp, polyribonucleotide nucleotidyltransferase YP_676468.1 PFAM: methyltransferase small Methyltransferase type 12; KEGG: mlo:mlr5563 ribosomal RNA small subunit methyltransferase C YP_676469.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_676470.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_676471.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_676472.1 PFAM: ferric-uptake regulator; KEGG: mlo:mlr5570 transcription regulator YP_676473.1 KEGG: mlo:msr1194 hypothetical protein YP_676474.1 PFAM: protein of unknown function DUF1058 SH3, type 3; SMART: SH3-like region; KEGG: mlo:mll5573 hypothetical protein YP_676475.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mlo:mlr5574 2-hydroxyacid dehydrogenase YP_676476.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc00744 putative transport protein transmembrane YP_676477.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_676478.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_676479.1 PFAM: ferric-uptake regulator; KEGG: bmb:BruAb1_1641 hypothetical ferric uptake regulation protein YP_676480.1 PFAM: regulatory proteins, AsnC/Lrp; KEGG: ret:RHE_CH04051 putative transcriptional regulator protein YP_676481.1 PFAM: protein of unknown function DUF1498; KEGG: mlo:mlr8329 hypothetical protein YP_676482.1 KEGG: mlo:mlr4942 hypothetical protein YP_676483.1 PFAM: NLP/P60; KEGG: bmb:BruAb1_2152 NLP/P60 family protein YP_676484.1 PFAM: regulatory protein, MarR; KEGG: mlo:mlr5607 hypothetical protein YP_676485.1 PFAM: peptidase M17, leucyl aminopeptidase-like; KEGG: bms:BR2181 cytosol aminopeptidase family protein YP_676486.1 PFAM: TPR repeat Tetratricopeptide TPR_4 Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: mlo:mll5605 hypothetical protein YP_676487.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 1; KEGG: hch:HCH_01471 spermidine/putrescine-binding periplasmic protein YP_676488.1 PFAM: ABC transporter related Transport-associated OB; SMART: ATPase; KEGG: dra:DR1302 spermidine/putrescine transport system ATP-binding protein YP_676489.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01473 ABC-type spermidine/putrescine transport system, permease component I YP_676490.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_01474 ABC-type spermidine/putrescine transport system, permease component II YP_676491.1 PFAM: protein of unknown function DUF1058 SH3, type 3; SMART: SH3-like region; KEGG: sme:SMc00062 hypothetical protein YP_676492.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: bmb:BruAb1_2110 rare lipoprotein A family protein YP_676493.1 KEGG: atc:AGR_L_2267 hypothetical protein YP_676494.1 catalyzes the formation of L-proline from L-ornithine YP_676495.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mlo:mll6778 arginase YP_676496.1 PFAM: regulatory proteins, AsnC/Lrp Helix-turn-helix, type 11; KEGG: mlo:mlr6779 transcriptional regulator YP_676497.1 PFAM: Malate/L-lactate dehydrogenase; KEGG: ppu:PP2835 oxidoreductase, Ldh family YP_676498.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bja:bll3049 hypothetical protein YP_676499.1 KEGG: bja:bll3050 hypothetical protein YP_676500.1 PFAM: Uncharacterized protein UPF0065; KEGG: bja:bll3051 hypothetical protein YP_676501.1 PFAM: regulatory protein GntR, HTH GntR-like; KEGG: pfl:PFL_1360 transcriptional regulator, GntR family YP_676502.1 PFAM: D-galactarate dehydratase/Altronate hydrolase-like; KEGG: atc:AGR_C_5115 probable D-galactarate dehydratase (GALCD) YP_676503.1 PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll7953 hypothetical protein YP_676504.1 PFAM: Shikimate/quinate 5-dehydrogenase Shikimate dehydrogenase substrate binding-like; KEGG: bme:BMEII0871 shikimate 5-dehydrogenase YP_676505.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mst:Msp_0290 predicted pyridoxal phosphate-dependent enzyme YP_676506.1 PFAM: aldehyde dehydrogenase; KEGG: bms:BR0210 aldehyde dehydrogenase family protein YP_676507.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_L_381 glutamine ABC transporter, ATP-binding protein (glnQ) YP_676508.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00161 probable amino acid ABC transporter, permease protein YP_676509.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_980GM putative ABC transporter permease YP_676510.1 PFAM: extracellular solute-binding protein, family 3; SMART: Ionotropic glutamate receptor; KEGG: sme:SMa0082 putative ABC transporter, periplasmic solute-binding protein YP_676511.1 PFAM: Uncharacterised conserved protein UCP012702 MlrC-like; KEGG: rpa:RPA1213 hypothetical protein YP_676512.1 KEGG: mlo:mlr3146 hypothetical protein YP_676513.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_676514.1 PFAM: basic membrane lipoprotein; KEGG: mlo:mlr3148 membrane lipoprotein YP_676515.1 PFAM: peptidase M20 peptidase dimerisation; KEGG: bmb:BruAb1_0118 hypothetical protein YP_676516.1 PFAM: 3'-5' exonuclease; KEGG: mlo:mll3296 hypothetical proteins, contains similarity to Ribonuclease D YP_676517.1 TIGRFAM: diguanylate cyclase; PFAM: conserved hypothetical protein EAL CHASE4; KEGG: sme:SMa0137 putative kinase/esterase YP_676518.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51 penicillin-binding protein, transpeptidase; KEGG: mlo:mll3238 penicillin-binding protein YP_676519.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mll3237 short-chain dehydrogenase YP_676520.1 KEGG: mlo:mlr3233 hypothetical protein YP_676521.1 TIGRFAM: uroporphyrin-III C-methyltransferase siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mlo:mll3232 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase YP_676522.1 KEGG: mlo:msl3231 hypothetical protein YP_676523.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like nitrite and sulphite reductase 4Fe-4S region; KEGG: mlo:mll3230 sulfite reductase hemoprotein subunit YP_676524.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_676525.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: mlo:mll3227 hypothetical protein YP_676526.1 PFAM: ribosomal protein S21; KEGG: ret:RHE_CH01171 30S ribosomal protein S21 YP_676528.1 KEGG: mlo:mlr5595 pilus assembly protein cpaB YP_676529.1 PFAM: type II and III secretion system protein transport-associated; KEGG: mlo:mlr5597 exporter protein, cpaC YP_676530.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: mlo:mlr5598 pilus assembly protein cpaD YP_676531.1 KEGG: sme:SMc04109 putative response regulator protein YP_676532.1 PFAM: type II secretion system protein E; KEGG: mlo:mlr5602 secretory protein kinase, cpaF YP_676533.1 PFAM: type II secretion system protein; KEGG: mlo:mlr5603 hypothetical protein YP_676534.1 PFAM: type II secretion system protein; KEGG: mlo:mlr5604 hypothetical protein YP_676535.1 KEGG: ret:RHE_CH02709 zinc uptake transcriptional regulator protein, Fur family YP_676536.1 PFAM: ABC-3; KEGG: ret:RHE_CH02710 zinc uptake ABC transporter, permease protein YP_676537.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: atc:AGR_C_2804 HIGH-affinity zinc uptake system ATP-binding protein ZnuC YP_676538.1 PFAM: periplasmic solute binding protein; KEGG: ret:RHE_CH02712 zinc uptake ABC transporter, substrate-binding protein YP_676539.1 KEGG: sme:SMb20032 hypothetical protein YP_676540.1 PFAM: CsbD-like; KEGG: hch:HCH_05492 hypothetical protein YP_676541.1 PFAM: cytochrome P450; KEGG: mlo:mlr5192 similar to cytochrome P450 YP_676542.1 PFAM: protein of unknown function UPF0102; KEGG: mlo:mlr4633 predicted endonuclease YP_676543.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mlo:mlr4632 hypothetical protein YP_676544.1 KEGG: bja:blr0671 hypothetical protein YP_676545.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_676546.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_676547.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr4624 lactoylglutathione lyase YP_676548.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_676549.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_676550.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mlo:mlr2781 hypothetical protein YP_676551.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_676552.1 PFAM: protein of unknown function UPF0126; KEGG: ret:RHE_CH00105 hypothetical conserved membrane protein YP_676553.1 PFAM: PfkB; KEGG: mlo:mll5335 hypothetical protein YP_676554.1 putative role in sulfur assimilation YP_676555.1 PFAM: aldo/keto reductase; KEGG: ade:Adeh_2028 2,5-didehydrogluconate reductase YP_676556.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: ret:RHE_CH00817 putative hydrolase, haloacid dehalogenase-like family protein YP_676557.1 PFAM: protein of unknown function DUF59; KEGG: mlo:mlr5402 MRP protein(ATP/GTP-binding protein) homolog YP_676558.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rru:Rru_A0201 endonuclease/exonuclease/phosphatase YP_676559.1 KEGG: ret:RHE_PF00248 hypothetical protein YP_676560.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: sme:SMb20094 putative phospholipase protein YP_676562.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_676563.1 This protein performs the mismatch recognition step during the DNA repair process YP_676564.1 PFAM: Methyltransferase type 11; KEGG: mlo:mll7840 hypothetical protein YP_676565.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_676566.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN-like; KEGG: ret:RHE_CH00386 virulence factor transmembrane protein YP_676567.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_676568.1 PFAM: UspA; KEGG: mlo:mll5316 hypothetical protein YP_676569.1 PFAM: nitrogen-fixing NifU-like; KEGG: mlo:mll5315 thioredoxin-like protein YP_676570.1 PFAM: ErfK/YbiS/YcfS/YnhG; KEGG: bms:BR0139 lipoprotein, putative YP_676571.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: mlo:mll5312 transcriptional regulator YP_676572.1 PFAM: protein of unknown function DUF1052; KEGG: mlo:mll5310 hypothetical protein YP_676573.1 PFAM: response regulator receiver; KEGG: mlo:mlr5308 two-component, response regulator YP_676574.1 PFAM: ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase YP_676575.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase-like helicase-associated region DEAD/DEAH box helicase-like Helicase ATP-dependent-like; KEGG: mlo:mlr5306 ATP-dependent helicase YP_676576.1 PFAM: ABC transporter related; SMART: ATPase; KEGG: sme:SMc02587 putative ATP-binding ABC transporter protein YP_676577.1 KEGG: sme:SMc02588 putative permease ABC transporter protein YP_676578.1 KEGG: sme:SMc02589 conserved hypothetical protein YP_676579.1 KEGG: mlo:msr5525 hypothetical protein YP_676580.1 TIGRFAM: bacterioferritin; PFAM: Rubrerythrin Ferritin and Dps; KEGG: ret:RHE_CH04081 bacterioferritin protein YP_676581.1 PFAM: regulatory protein, ArsR; KEGG: bpe:BP2145 putative ArsR-family transcriptional regulator YP_676582.1 PFAM: Activator of Hsp90 ATPase homologue 1-like; KEGG: bbr:BB2401 hypothetical protein YP_676583.1 PFAM: Radical SAM; KEGG: atc:AGR_L_2955 hypothetical conserved protein YP_676584.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: ret:RHE_CH03712 6-pyruvoyl tetrahydropterin synthase protein YP_676585.1 TIGRFAM: exsB protein; PFAM: ExsB; KEGG: bmb:BruAb1_1948 ExsB protein YP_676586.1 KEGG: cbu:CBU_0902 hypothetical protein YP_676587.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_676588.1 PFAM: conserved hypothetical protein 103; KEGG: mlo:mlr5504 hypothetical protein YP_676589.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_676590.1 PFAM: histidine triad (HIT) protein; KEGG: mlo:mll5502 hypothetical protein YP_676591.1 TIGRFAM: peptide chain release factor 3 small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding elongation factor Tu, domain 2; KEGG: mlo:mlr5356 peptide chain release factor RF-3 YP_676592.1 PFAM: regulatory protein, ArsR; KEGG: sme:SMc04162 putative transcription regulator protein YP_676593.1 KEGG: sme:SMc04161 hypothetical protein YP_676594.1 catalyzes the formation of dUMP from dUTP YP_676595.1 KEGG: mlo:mll5340 hypothetical protein YP_676597.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: pfo:Pfl_4892 cytochrome bd ubiquinol oxidase, subunit II YP_676598.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: eba:ebA4639 cyanide insensitive terminal oxidase YP_676599.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: rsp:RSP_1613 TRAP-T family transporter, DctP subunit YP_676600.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_1614 TRAP-T family transporter with fused DctQ/DctM subunits YP_676601.1 KEGG: rsp:RSP_1615 hypothetical protein YP_676602.1 KEGG: bms:BR1968 hypothetical protein YP_676603.1 PFAM: protein of unknown function DUF892; KEGG: mlo:mll4608 YcfI, putative structural proteins YP_676604.1 PFAM: Rubrerythrin protein of unknown function DUF125, transmembrane; KEGG: mlo:mlr4601 hypothetical protein YP_676605.1 PFAM: regulatory protein, TetR; KEGG: mlo:mlr4593 transcriptional regulator YP_676606.1 PFAM: adenylate cyclase; KEGG: mlo:mll4592 hypothetical protein YP_676607.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_676608.1 PFAM: response regulator receiver ATP-binding region, ATPase-like histidine kinase A-like; KEGG: mlo:mll8067 two-component sensor histidine kinase YP_676609.1 SMART: PAS; KEGG: sco:SCO3691 regulatory protein YP_676610.1 PFAM: alpha/beta hydrolase fold; KEGG: sma:SAV923 putative hydrolase YP_676611.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mlo:mll5489 putative 2-hydroxyacid dehydrogenase YP_676612.1 PFAM: ABC transporter related Oligopeptide/dipeptide ABC transporter-like; SMART: ATPase; KEGG: mlo:mll5490 peptide ABC transporter, ATP-binding protein YP_676613.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5492 peptide ABC transporter, permease protein YP_676614.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5491 peptide ABC transporter, permease protein YP_676615.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5493 ABC transporter, solute-binding protein YP_676616.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll5494 peptide ABC transporter, periplasmic peptide-binding protein YP_676617.1 PFAM: cytochrome c, class I; KEGG: sme:SMc02897 putative cytochrome c transmembrane protein YP_676618.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_676619.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_676620.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Redoxin; KEGG: sme:SMb20964 putative anti-oxidant protein, AhpCTSA family YP_676621.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_676622.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; KEGG: mlo:mlr3166 ubiquinone biosynthesis protein AarF YP_676623.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_676624.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1; KEGG: mlo:mlr5511 probable transglycolase YP_676625.1 PFAM: protease inhibitor, Kazal-type; SMART: Proteinase inhibitor I1, Kazal; KEGG: sme:SMc04226 hypothetical lipoprotein transmembrane YP_676626.1 PFAM: peptidase A24A, prepilin type IV; KEGG: mlo:mlr5594 prepilin peptidase CpaA YP_676627.1 PFAM: Flp/Fap pilin component; KEGG: mlo:msr5593 fimbriae associated protein YP_676628.1 KEGG: mlo:mll5591 hypothetical protein YP_676629.1 PFAM: TadE-like; KEGG: bja:blr3942 hypothetical protein YP_676630.1 KEGG: mlo:mll5590 hypothetical protein YP_676631.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_676632.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_676633.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_676634.1 PFAM: ribosomal protein S20; KEGG: mlo:mll5582 30S ribosomal protein S20