-- dump date 20240506_003907 -- class Genbank::Contig -- table contig_comment -- id comment NC_015167.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002534.1.REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa RicaREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: MudREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: ChemoheterotrophREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa RicaREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. LewinREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-TitaniumREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11 Pseudo Genes (incomplete) :: 7 of 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11 Pseudo Genes (incomplete) :: 7 of 11 Pseudo Genes (internal stop) :: 3 of 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11 Pseudo Genes (incomplete) :: 7 of 11 Pseudo Genes (internal stop) :: 3 of 11 Pseudo Genes (multiple problems) :: 3 of 11REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11 Pseudo Genes (incomplete) :: 7 of 11 Pseudo Genes (internal stop) :: 3 of 11 Pseudo Genes (multiple problems) :: 3 of 11 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002534.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Cellulophaga lytica Cy l20, DSM 7489 collection_date :: 1969 lat_lon :: 10.131928 -83.518524 depth :: Missing alt_elev :: Missing country :: Costa Rica environment :: Mud num_replicons :: 1 ref_biomaterial :: DSM 7489, ATCC 23178, IAM 14306 biotic_relationship :: Free living trophic_level :: Chemoheterotroph rel_to_oxygen :: Aerobe isol_growth_condt :: 10425785 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi04010 Type Strain :: Yes Funding Program :: DOE-GEBA 2009 Gene Calling Method :: Prodigal 1.4, GenePRIMP Isolation Site :: Beach mud; Limon, Costa Rica Isolation Comments :: isolated by R.A. Lewin Cell Shape :: Rod-shaped Motility :: Motile Temperature Range :: Mesophile pH :: 7.5 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: Illumina, 454-Titanium ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 04/27/2023 00:56:09 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,342 CDSs (total) :: 3,286 Genes (coding) :: 3,275 CDSs (with protein) :: 3,275 Genes (RNA) :: 56 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 40 ncRNAs :: 4 Pseudo Genes (total) :: 11 CDSs (without protein) :: 11 Pseudo Genes (ambiguous residues) :: 0 of 11 Pseudo Genes (frameshifted) :: 4 of 11 Pseudo Genes (incomplete) :: 7 of 11 Pseudo Genes (internal stop) :: 3 of 11 Pseudo Genes (multiple problems) :: 3 of 11 ##Genome-Annotation-Data-END## COMPLETENESS: full length.