-- dump date 20240506_001610 -- class Genbank::Contig -- table contig_comment -- id comment NC_013131.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001700.1.REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSMREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: ProdigalREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano ItalyREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: ItalyREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28CREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: AcidophileREFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Acidophile ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001700.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082785 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 10/31/2023 01:25:15 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 9,082 CDSs (total) :: 9,010 Genes (coding) :: 8,974 CDSs (with protein) :: 8,974 Genes (RNA) :: 72 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 3 Pseudo Genes (total) :: 36 CDSs (without protein) :: 36 Pseudo Genes (ambiguous residues) :: 0 of 36 Pseudo Genes (frameshifted) :: 5 of 36 Pseudo Genes (incomplete) :: 32 of 36 Pseudo Genes (internal stop) :: 2 of 36 Pseudo Genes (multiple problems) :: 3 of 36 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Catenulispora acidiphila ID139908, DSM 44928 Culture Collection ID :: DSM 44928, NRRL B-24433, JCM 14897 GOLD Stamp ID :: Gi02233 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal Isolation Site :: Forest soil from Gerenzano Italy Collection Date :: before 2006 Isolation Country :: Italy Oxygen Requirement :: Aerobe Cell Shape :: Filament-shaped Motility :: Nonmotile Sporulation :: Sporulating Temperature Range :: Mesophile Temperature Optimum :: 22 - 28C pH :: 6 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Soil Phenotypes :: Acidophile ##Metadata-END## COMPLETENESS: full length.