-- dump date 20140619_025708 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_358873.1 78043997 3726232 225..359 1 NC_007503.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 359 rpmH 3726232 rpmH Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L34 YP_358873.1 225 D 246194 CDS YP_358874.1 78045102 3728228 426..776 1 NC_007503.1 identified by similarity to SP:P25814; match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 776 rnpA 3728228 rnpA Carboxydothermus hydrogenoformans Z-2901 ribonuclease P protein component YP_358874.1 426 D 246194 CDS YP_358875.1 78043459 3728843 769..996 1 NC_007503.1 identified by similarity to SP:Q8RHA5; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein 996 3728843 CHY_0003 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358875.1 769 D 246194 CDS YP_358876.1 78043134 3728672 1004..1675 1 NC_007503.1 identified by similarity to SP:Q01625; match to protein family HMM PF02096; sporulation associated-membrane protein 1675 3728672 CHY_0004 Carboxydothermus hydrogenoformans Z-2901 sporulation associated-membrane protein YP_358876.1 1004 D 246194 CDS YP_358877.1 78045166 3728292 1662..2282 1 NC_007503.1 identified by similarity to SP:Q01620; match to protein family HMM PF01424; jag protein 2282 jag 3728292 jag Carboxydothermus hydrogenoformans Z-2901 jag protein YP_358877.1 1662 D 246194 CDS YP_358878.1 78044593 3727714 2359..3744 1 NC_007503.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE 3744 trmE 3727714 trmE Carboxydothermus hydrogenoformans Z-2901 tRNA modification GTPase TrmE YP_358878.1 2359 D 246194 CDS YP_358879.1 78043339 3728528 3754..5649 1 NC_007503.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5649 gidA1 3728528 gidA1 Carboxydothermus hydrogenoformans Z-2901 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_358879.1 3754 D 246194 CDS YP_358880.1 78044839 3727964 5633..6340 1 NC_007503.1 identified by similarity to SP:P25813; match to protein family HMM PF02527; match to protein family HMM TIGR00138; glucose-inhibited division protein B 6340 gidB 3727964 gidB Carboxydothermus hydrogenoformans Z-2901 glucose-inhibited division protein B YP_358880.1 5633 D 246194 CDS YP_358881.1 78043660 3728462 6483..7247 1 NC_007503.1 identified by similarity to SP:P37522; match to protein family HMM PF01656; sporulation initiation inhibitor protein soj 7247 soj 3728462 soj Carboxydothermus hydrogenoformans Z-2901 sporulation initiation inhibitor protein soj YP_358881.1 6483 D 246194 CDS YP_358882.1 78043063 3726439 7237..8097 1 NC_007503.1 identified by similarity to SP:P26497; match to protein family HMM PF02195; match to protein family HMM TIGR00180; stage 0 sporulation protein J 8097 3726439 CHY_0010 Carboxydothermus hydrogenoformans Z-2901 stage 0 sporulation protein J YP_358882.1 7237 D 246194 CDS YP_358883.1 78044965 3728090 8127..9278 1 NC_007503.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01977; cysteine desulfurase 9278 3728090 CHY_0011 Carboxydothermus hydrogenoformans Z-2901 cysteine desulfurase YP_358883.1 8127 D 246194 CDS YP_358884.1 78043356 3728877 9471..10502 1 NC_007503.1 identified by match to protein family HMM PF03601; hypothetical protein 10502 3728877 CHY_0012 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358884.1 9471 D 246194 CDS YP_358885.1 78044734 3727857 10537..11430 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 11430 3727857 CHY_0013 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_358885.1 10537 D 246194 CDS YP_358886.1 78042797 3726853 complement(11478..12644) 1 NC_007503.1 identified by similarity to SP:Q9X059; match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 12644 3726853 CHY_0014 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358886.1 11478 R 246194 CDS YP_358887.1 78043590 3728743 complement(12646..13392) 1 NC_007503.1 identified by similarity to GB:AAM24029.1; hypothetical protein 13392 3728743 CHY_0015 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358887.1 12646 R 246194 CDS YP_358888.1 78043673 3726704 complement(13393..14196) 1 NC_007503.1 identified by match to protein family HMM PF01171; match to protein family HMM TIGR00268; hypothetical protein 14196 3726704 CHY_0016 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358888.1 13393 R 246194 CDS YP_358889.1 78043587 3728740 14277..14771 1 NC_007503.1 identified by similarity to GB:BAB82356.1; hypothetical protein 14771 3728740 CHY_0017 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358889.1 14277 D 246194 CDS YP_358890.1 78042838 3727092 14773..15411 1 NC_007503.1 identified by match to protein family HMM PF00156; phosphoribosyl transferase domain-containing protein 15411 3727092 CHY_0018 Carboxydothermus hydrogenoformans Z-2901 phosphoribosyl transferase domain-containing protein YP_358890.1 14773 D 246194 CDS YP_358891.1 78044281 3727398 15458..15694 1 NC_007503.1 identified by similarity to SP:Q9K9I0; match to protein family HMM PF03698; hypothetical protein 15694 3727398 CHY_0019 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358891.1 15458 D 246194 CDS YP_358892.1 78043277 3728720 complement(15615..16205) 1 NC_007503.1 identified by similarity to PIR:F84156; match to protein family HMM PF06866; hypothetical protein 16205 3728720 CHY_0020 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358892.1 15615 R 246194 CDS YP_358893.1 78044479 3727598 16298..17302 1 NC_007503.1 hypothetical protein 17302 3727598 CHY_0021 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358893.1 16298 D 246194 CDS YP_358894.1 78045219 3728345 17312..17863 1 NC_007503.1 hypothetical protein 17863 3728345 CHY_0022 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358894.1 17312 D 246194 CDS YP_358895.1 78043016 3726469 17854..19245 1 NC_007503.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 19245 3726469 CHY_0023 Carboxydothermus hydrogenoformans Z-2901 aminopeptidase YP_358895.1 17854 D 246194 CDS YP_358896.1 78045022 3728147 19380..19796 1 NC_007503.1 identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 19796 3728147 CHY_0024 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358896.1 19380 D 246194 CDS YP_358897.1 78045025 3728150 complement(19798..20679) 1 NC_007503.1 identified by similarity to GB:BAC70657.1; hypothetical protein 20679 3728150 CHY_0025 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358897.1 19798 R 246194 CDS YP_358898.1 78042960 3726822 complement(20666..21478) 1 NC_007503.1 identified by match to protein family HMM PF01068; match to protein family HMM PF01331; DNA ligase, ATP-dependent 21478 3726822 CHY_0026 Carboxydothermus hydrogenoformans Z-2901 DNA ligase, ATP-dependent YP_358898.1 20666 R 246194 CDS YP_358899.1 78043847 3726588 complement(21494..22279) 1 NC_007503.1 identified by similarity to GB:BAC14989.1; match to protein family HMM PF02735; KU domain-containing protein 22279 3726588 CHY_0027 Carboxydothermus hydrogenoformans Z-2901 KU domain-containing protein YP_358899.1 21494 R 246194 CDS YP_358900.1 78044067 3727183 complement(22346..22453) 1 NC_007503.1 hypothetical protein 22453 3727183 CHY_0028 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358900.1 22346 R 246194 CDS YP_358901.1 78044623 3727744 22437..23648 1 NC_007503.1 identified by similarity to SP:P31064; match to protein family HMM PF04143; inner membrane protein 23648 3727744 CHY_0029 Carboxydothermus hydrogenoformans Z-2901 inner membrane protein YP_358901.1 22437 D 246194 CDS YP_358902.1 78044446 3727564 23650..23883 1 NC_007503.1 identified by similarity to GB:AAP77896.1; match to protein family HMM PF01206; hypothetical protein 23883 3727564 CHY_0030 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358902.1 23650 D 246194 CDS YP_358903.1 78044617 3727738 complement(23931..25019) 1 NC_007503.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 25019 ychF 3727738 ychF Carboxydothermus hydrogenoformans Z-2901 GTP-dependent nucleic acid-binding protein EngD YP_358903.1 23931 R 246194 CDS YP_358904.1 78043835 3728445 complement(25089..25289) 1 NC_007503.1 identified by similarity to GB:AAM25886.1; match to protein family HMM PF06107; hypothetical protein 25289 3728445 CHY_0032 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358904.1 25089 R 246194 CDS YP_358905.1 78045203 3728329 complement(25282..26136) 1 NC_007503.1 identified by match to protein family HMM PF00924; mechanosensitive ion channel protein MscS 26136 3728329 CHY_0033 Carboxydothermus hydrogenoformans Z-2901 mechanosensitive ion channel protein MscS YP_358905.1 25282 R 246194 CDS YP_358906.1 78043206 3728570 complement(26291..28180) 1 NC_007503.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase catalytic subunit 28180 cooSV 3728570 cooSV Carboxydothermus hydrogenoformans Z-2901 carbon-monoxide dehydrogenase catalytic subunit YP_358906.1 26291 R 246194 CDS YP_358907.1 78042831 3726848 28352..28642 1 NC_007503.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 28642 rpsF 3726848 rpsF Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S6 YP_358907.1 28352 D 246194 CDS YP_358908.1 78044015 3727130 28661..29092 1 NC_007503.1 identified by similarity to SP:P37455; match to protein family HMM PF00436; match to protein family HMM PF01336; match to protein family HMM TIGR00621; single-strand binding protein 29092 3727130 CHY_0036 Carboxydothermus hydrogenoformans Z-2901 single-strand binding protein YP_358908.1 28661 D 246194 CDS YP_358909.1 78043292 3728735 29111..29341 1 NC_007503.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 29341 rpsR 3728735 rpsR Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S18 YP_358909.1 29111 D 246194 CDS YP_358910.1 78044007 3726242 29465..30454 1 NC_007503.1 hypothetical protein 30454 3726242 CHY_0038 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358910.1 29465 D 246194 CDS YP_358911.1 78043341 3728530 30426..30881 1 NC_007503.1 identified by similarity to SP:P37437; match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 30881 rplI 3728530 rplI Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L9 YP_358911.1 30426 D 246194 CDS YP_358912.1 78043822 3728432 30884..32782 1 NC_007503.1 identified by similarity to SP:P42425; match to protein family HMM PF00004; match to protein family HMM PF05362; ATP-dependent protease La 32782 3728432 CHY_0040 Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease La YP_358912.1 30884 D 246194 CDS YP_358913.1 78043236 3728619 32795..34126 1 NC_007503.1 identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 34126 dnaB 3728619 dnaB Carboxydothermus hydrogenoformans Z-2901 replicative DNA helicase YP_358913.1 32795 D 246194 CDS YP_358914.1 78044629 3727750 34295..34957 1 NC_007503.1 identified by similarity to GB:AAM25355.1; hypothetical protein 34957 3727750 CHY_0042 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358914.1 34295 D 246194 CDS YP_358915.1 78044081 3727197 35012..36067 1 NC_007503.1 identified by match to protein family HMM PF01855; keto/oxoacid ferredoxin oxidoreductase subunit alpha 36067 3727197 CHY_0043 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit alpha YP_358915.1 35012 D 246194 CDS YP_358916.1 78043364 3728885 36081..36824 1 NC_007503.1 identified by match to protein family HMM PF02775; keto/oxoacid ferredoxin oxidoreductase subunit beta 36824 3728885 CHY_0044 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit beta YP_358916.1 36081 D 246194 CDS YP_358917.1 78043393 3728855 36827..37390 1 NC_007503.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; keto/oxoacid ferredoxin oxidoreductase subunit gamma 37390 3728855 CHY_0045 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit gamma YP_358917.1 36827 D 246194 CDS YP_358918.1 78044911 3728036 37406..37642 1 NC_007503.1 identified by match to protein family HMM PF00037; keto/oxoacid ferredoxin oxidoreductase subunit delta 37642 3728036 CHY_0046 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit delta YP_358918.1 37406 D 246194 CDS YP_358919.1 78042679 3726968 complement(37724..39238) 1 NC_007503.1 identified by similarity to SP:P41363; match to protein family HMM PF00082; serine protease 39238 3726968 CHY_0047 Carboxydothermus hydrogenoformans Z-2901 serine protease YP_358919.1 37724 R 246194 CDS YP_358920.1 78044185 3727301 39312..39518 1 NC_007503.1 identified by similarity to SP:P37534; hypothetical protein 39518 3727301 CHY_0048 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358920.1 39312 D 246194 CDS YP_358921.1 78045175 3728301 39554..40882 1 NC_007503.1 identified by similarity to SP:P21885; match to protein family HMM PF01276; lysine decarboxylase 40882 cad 3728301 cad Carboxydothermus hydrogenoformans Z-2901 lysine decarboxylase YP_358921.1 39554 D 246194 CDS YP_358922.1 78044441 3727559 40882..41493 1 NC_007503.1 identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 41493 tmk 3727559 tmk Carboxydothermus hydrogenoformans Z-2901 thymidylate kinase YP_358922.1 40882 D 246194 CDS YP_358923.1 78043743 3726269 41486..42289 1 NC_007503.1 identified by similarity to SP:P37540; DNA polymerase III subunit delta' 42289 3726269 CHY_0051 Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit delta' YP_358923.1 41486 D 246194 CDS YP_358924.1 78042958 3726820 42345..43193 1 NC_007503.1 identified by similarity to SP:P37541; similarity to SP:P45685; match to protein family HMM PF04468; tpl protein 43193 3726820 CHY_0052 Carboxydothermus hydrogenoformans Z-2901 tpl protein YP_358924.1 42345 D 246194 CDS YP_358925.1 78042983 3726553 43159..43524 1 NC_007503.1 identified by similarity to GB:AAP24086.1; match to protein family HMM PF06156; hypothetical protein 43524 3726553 CHY_0053 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358925.1 43159 D 246194 CDS YP_358926.1 78043617 3728828 43493..44242 1 NC_007503.1 identified by similarity to SP:P37543; match to protein family HMM PF05175; hypothetical protein 44242 3728828 CHY_0054 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358926.1 43493 D 246194 CDS YP_358927.1 78043091 3726369 44242..45051 1 NC_007503.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; hypothetical protein 45051 3726369 CHY_0055 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358927.1 44242 D 246194 CDS YP_358928.1 78043675 3726706 45171..46046 1 NC_007503.1 identified by similarity to SP:P27291; match to protein family HMM PF04972; osmotically inducible protein 46046 3726706 CHY_0056 Carboxydothermus hydrogenoformans Z-2901 osmotically inducible protein YP_358928.1 45171 D 246194 CDS YP_358929.1 78044578 3727698 46164..47276 1 NC_007503.1 identified by similarity to SP:O34358; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease Do 47276 3727698 CHY_0057 Carboxydothermus hydrogenoformans Z-2901 serine protease Do YP_358929.1 46164 D 246194 CDS YP_358930.1 78045158 3728284 47337..47816 1 NC_007503.1 identified by match to protein family HMM PF02590; match to protein family HMM TIGR00246; hypothetical protein 47816 3728284 CHY_0058 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358930.1 47337 D 246194 CDS YP_358931.1 78042746 3726918 complement(48186..49094) 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 49094 3726918 CHY_0059 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_358931.1 48186 R 246194 CDS YP_358932.1 78043316 3728641 49465..50865 1 NC_007503.1 identified by match to protein family HMM PF00939; match to protein family HMM TIGR00785; anion transporter family protein 50865 3728641 CHY_0060 Carboxydothermus hydrogenoformans Z-2901 anion transporter family protein YP_358932.1 49465 D 246194 CDS YP_358933.1 78044230 3727347 50977..51822 1 NC_007503.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 51822 3727347 CHY_0061 Carboxydothermus hydrogenoformans Z-2901 fumarate hydratase YP_358933.1 50977 D 246194 CDS YP_358934.1 78043076 3726393 51846..52400 1 NC_007503.1 Catalyzes the reversible hydration of fumaric acid to yield l-malic acid; fumarate hydratase 52400 3726393 CHY_0062 Carboxydothermus hydrogenoformans Z-2901 fumarate hydratase YP_358934.1 51846 D 246194 CDS YP_358935.1 78044723 3727845 52405..54114 1 NC_007503.1 identified by match to protein family HMM PF00890; match to protein family HMM PF02910; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01812; fumarate reductase flavoprotein subunit 54114 frdA 3727845 frdA Carboxydothermus hydrogenoformans Z-2901 fumarate reductase flavoprotein subunit YP_358935.1 52405 D 246194 CDS YP_358936.1 78044013 3727128 54115..55068 1 NC_007503.1 identified by match to protein family HMM PF00111; match to protein family HMM TIGR00384; fumarate reductase, iron-sulfur subunit 55068 frdB1 3727128 frdB1 Carboxydothermus hydrogenoformans Z-2901 fumarate reductase, iron-sulfur subunit YP_358936.1 54115 D 246194 CDS YP_358937.1 78043435 3728898 55194..56057 1 NC_007503.1 identified by similarity to OMNI:CT2040; match to protein family HMM PF02754; succinate/fumarate oxidoreductase 56057 3728898 CHY_0065 Carboxydothermus hydrogenoformans Z-2901 succinate/fumarate oxidoreductase YP_358937.1 55194 D 246194 CDS YP_358938.1 78043041 3726456 56176..57432 1 NC_007503.1 identified by similarity to OMNI:NTL02MA1275; hypothetical protein 57432 3726456 CHY_0066 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358938.1 56176 D 246194 CDS YP_358939.1 78044497 3727616 57665..58933 1 NC_007503.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 58933 dsdA 3727616 dsdA Carboxydothermus hydrogenoformans Z-2901 D-serine dehydratase YP_358939.1 57665 D 246194 CDS YP_358940.1 78044612 3727733 59035..60396 1 NC_007503.1 identified by match to protein family HMM PF00209; sodium transporter family protein 60396 3727733 CHY_0068 Carboxydothermus hydrogenoformans Z-2901 sodium transporter family protein YP_358940.1 59035 D 246194 CDS YP_358941.1 78044032 3727147 60721..61173 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 61173 3727147 CHY_0069 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_358941.1 60721 D 246194 CDS YP_358942.1 78043071 3726388 61166..61600 1 NC_007503.1 identified by similarity to GB:AAM05257.1; match to protein family HMM PF01934; hypothetical protein 61600 3726388 CHY_0070 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358942.1 61166 D 246194 CDS YP_358943.1 78043490 3726597 61752..61874 1 NC_007503.1 hypothetical protein 61874 3726597 CHY_0071 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358943.1 61752 D 246194 CDS YP_358944.1 78042932 3726992 61861..62223 1 NC_007503.1 identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 62223 glnB 3726992 glnB Carboxydothermus hydrogenoformans Z-2901 nitrogen regulatory protein P-II YP_358944.1 61861 D 246194 CDS YP_358945.1 78044978 3728103 62220..63536 1 NC_007503.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 63536 amt 3728103 amt Carboxydothermus hydrogenoformans Z-2901 ammonium transporter YP_358945.1 62220 D 246194 CDS YP_358946.1 78043610 3728821 63684..64853 1 NC_007503.1 identified by similarity to GB:AAP10909.1; match to protein family HMM PF00563; diguanylate phosphodiesterase 64853 3728821 CHY_0074 Carboxydothermus hydrogenoformans Z-2901 diguanylate phosphodiesterase YP_358946.1 63684 D 246194 CDS YP_358947.1 78043036 3726451 complement(64901..66355) 1 NC_007503.1 identified by similarity to SP:Q45068; match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein 66355 3726451 CHY_0075 Carboxydothermus hydrogenoformans Z-2901 amino acid carrier protein YP_358947.1 64901 R 246194 CDS YP_358948.1 78045094 3728220 66711..67805 1 NC_007503.1 identified by match to protein family HMM PF00294; PfkB family kinase 67805 3728220 CHY_0076 Carboxydothermus hydrogenoformans Z-2901 PfkB family kinase YP_358948.1 66711 D 246194 CDS YP_358949.1 78044666 3727788 67802..68716 1 NC_007503.1 identified by similarity to GB:CAB87988.1; match to protein family HMM PF04227; indigoidine synthesis protein-like protein 68716 3727788 CHY_0077 Carboxydothermus hydrogenoformans Z-2901 indigoidine synthesis protein-like protein YP_358949.1 67802 D 246194 CDS YP_358950.1 78043315 3728640 68796..69260 1 NC_007503.1 identified by similarity to OMNI:NTL01BH3639; match to protein family HMM PF06445; hypothetical protein 69260 3728640 CHY_0078 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358950.1 68796 D 246194 CDS YP_358951.1 78042827 3726844 69282..70094 1 NC_007503.1 identified by match to protein family HMM PF04909; amidohydrolase 70094 3726844 CHY_0079 Carboxydothermus hydrogenoformans Z-2901 amidohydrolase YP_358951.1 69282 D 246194 CDS YP_358952.1 78044920 3728045 70160..70588 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 70588 3728045 CHY_0080 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_358952.1 70160 D 246194 CDS YP_358953.1 78044342 3727459 70715..70819 1 NC_007503.1 hypothetical protein 70819 3727459 CHY_0081 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358953.1 70715 D 246194 CDS YP_358954.1 78042741 3726913 70812..71261 1 NC_007503.1 identified by match to protein family HMM PF00582; universal stress family protein 71261 3726913 CHY_0082 Carboxydothermus hydrogenoformans Z-2901 universal stress family protein YP_358954.1 70812 D 246194 CDS YP_358955.1 78043278 3728721 complement(71306..71692) 1 NC_007503.1 identified by similarity to GP:1498752; carbon monoxide oxidation system transcription regulator CooA-2 71692 3728721 CHY_0083 Carboxydothermus hydrogenoformans Z-2901 carbon monoxide oxidation system transcription regulator CooA-2 YP_358955.1 71306 R 246194 CDS YP_358956.1 78044922 3728047 complement(71950..72117) 1 NC_007503.1 hypothetical protein 72117 3728047 CHY_0084 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358956.1 71950 R 246194 CDS YP_358957.1 78044574 3727694 complement(72111..74021) 1 NC_007503.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase catalytic subunit 74021 cooSII 3727694 cooSII Carboxydothermus hydrogenoformans Z-2901 carbon-monoxide dehydrogenase catalytic subunit YP_358957.1 72111 R 246194 CDS YP_358958.1 78045112 3728238 complement(74040..74474) 1 NC_007503.1 identified by similarity to OMNI:AF0950; match to protein family HMM PF00037; (Fe-S)-binding protein 74474 cooF1 3728238 cooF1 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_358958.1 74040 R 246194 CDS YP_358959.1 78044551 3727670 complement(74633..74749) 1 NC_007503.1 hypothetical protein 74749 3727670 CHY_0087 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358959.1 74633 R 246194 CDS YP_358960.1 78044152 3727268 74861..76042 1 NC_007503.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 76042 3727268 CHY_0088 Carboxydothermus hydrogenoformans Z-2901 RND family efflux transporter MFP subunit YP_358960.1 74861 D 246194 CDS YP_358961.1 78043038 3726453 76039..76731 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 76731 3726453 CHY_0089 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_358961.1 76039 D 246194 CDS YP_358962.1 78042731 3726942 76742..77944 1 NC_007503.1 identified by match to protein family HMM PF02687; ABC transporter permease 77944 3726942 CHY_0090 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_358962.1 76742 D 246194 CDS YP_358963.1 78043258 3728544 77959..79416 1 NC_007503.1 identified by similarity to GB:AAP11573.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 79416 3728544 CHY_0091 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_358963.1 77959 D 246194 CDS YP_358964.1 78045188 3728314 79413..80117 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 80117 3728314 CHY_0092 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_358964.1 79413 D 246194 CDS YP_358965.1 78043357 3728878 complement(80149..80325) 1 NC_007503.1 identified by similarity to GB:BAC12840.1; hypothetical protein 80325 3728878 CHY_0093 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358965.1 80149 R 246194 CDS YP_358966.1 78043294 3728737 complement(80332..81240) 1 NC_007503.1 identified by match to protein family HMM PF01145; hypothetical protein 81240 3728737 CHY_0094 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358966.1 80332 R 246194 CDS YP_358967.1 78042752 3726924 complement(81616..82743) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 82743 3726924 CHY_0095 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_358967.1 81616 R 246194 CDS YP_358968.1 78042650 3726314 complement(82826..82918) 1 NC_007503.1 hypothetical protein 82918 3726314 CHY_0096 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358968.1 82826 R 246194 CDS YP_358969.1 78043821 3728431 82973..83872 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 83872 3728431 CHY_0097 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_358969.1 82973 D 246194 CDS YP_358970.1 78042642 3726306 83978..85198 1 NC_007503.1 identified by match to protein family HMM PF07690; transporter 85198 3726306 CHY_0098 Carboxydothermus hydrogenoformans Z-2901 transporter YP_358970.1 83978 D 246194 CDS YP_358971.1 78044996 3728121 85120..86331 1 NC_007503.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926; methylase 86331 3728121 CHY_0099 Carboxydothermus hydrogenoformans Z-2901 methylase YP_358971.1 85120 D 246194 CDS YP_358972.1 78044501 3727620 86372..87769 1 NC_007503.1 identified by similarity to GB:AAL94332.1; match to protein family HMM PF01637; match to protein family HMM PF03008; ATP-binding protein 87769 3727620 CHY_0100 Carboxydothermus hydrogenoformans Z-2901 ATP-binding protein YP_358972.1 86372 D 246194 CDS YP_358973.1 78043709 3726661 87872..88735 1 NC_007503.1 identified by match to protein family HMM PF00892; hypothetical protein 88735 3726661 CHY_0101 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358973.1 87872 D 246194 CDS YP_358974.1 78044936 3728061 complement(88792..89304) 1 NC_007503.1 identified by similarity to SP:P23887; match to protein family HMM PF00210; ferritin 89304 3728061 CHY_0102 Carboxydothermus hydrogenoformans Z-2901 ferritin YP_358974.1 88792 R 246194 CDS YP_358975.1 78042964 3726826 complement(89376..90299) 1 NC_007503.1 identified by match to protein family HMM PF01966; HD domain-containing protein 90299 3726826 CHY_0103 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_358975.1 89376 R 246194 CDS YP_358976.1 78042874 3727050 complement(90538..92376) 1 NC_007503.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 92376 asnB 3727050 asnB Carboxydothermus hydrogenoformans Z-2901 asparagine synthase YP_358976.1 90538 R 246194 CDS YP_358977.1 78044910 3728035 92548..92934 1 NC_007503.1 identified by similarity to GB:AAM24032.1; hypothetical protein 92934 3728035 CHY_0105 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358977.1 92548 D 246194 CDS YP_358978.1 78045183 3728309 complement(92889..93113) 1 NC_007503.1 hypothetical protein 93113 3728309 CHY_0106 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358978.1 92889 R 246194 CDS YP_358979.1 78043138 3728676 93068..93367 1 NC_007503.1 hypothetical protein 93367 3728676 CHY_0107 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358979.1 93068 D 246194 CDS YP_358980.1 78042762 3726895 93400..94245 1 NC_007503.1 identified by match to protein family HMM PF01435; M48 family peptidase 94245 3726895 CHY_0108 Carboxydothermus hydrogenoformans Z-2901 M48 family peptidase YP_358980.1 93400 D 246194 CDS YP_358981.1 78043297 3728602 94388..94840 1 NC_007503.1 identified by similarity to OMNI:CC0123; hypothetical protein 94840 3728602 CHY_0109 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358981.1 94388 D 246194 CDS YP_358982.1 78042700 3726950 complement(94857..95081) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 95081 3726950 CHY_0110 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_358982.1 94857 R 246194 CDS YP_358983.1 78043371 3728892 95099..95227 1 NC_007503.1 hypothetical protein 95227 3728892 CHY_0111 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358983.1 95099 D 246194 CDS YP_358984.1 78043216 3728580 95212..96456 1 NC_007503.1 identified by similarity to GB:AAM24362.1; match to protein family HMM PF01926; match to protein family HMM TIGR00231; GTP-binding protein 96456 3728580 CHY_0112 Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein YP_358984.1 95212 D 246194 CDS YP_358985.1 78044882 3728007 96437..96973 1 NC_007503.1 identified by similarity to SP:P42334; match to protein family HMM PF01569; PAP2 family protein 96973 3728007 CHY_0113 Carboxydothermus hydrogenoformans Z-2901 PAP2 family protein YP_358985.1 96437 D 246194 CDS YP_358986.1 78042949 3726811 97267..97749 1 NC_007503.1 identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 97749 3726811 CHY_0114 Carboxydothermus hydrogenoformans Z-2901 AsnC family transcriptional regulator YP_358986.1 97267 D 246194 CDS YP_358987.1 78043844 3726585 97746..98924 1 NC_007503.1 identified by match to protein family HMM PF00155; aspartate aminotransferase 98924 3726585 CHY_0115 Carboxydothermus hydrogenoformans Z-2901 aspartate aminotransferase YP_358987.1 97746 D 246194 CDS YP_358988.1 78043815 3726633 99036..99467 1 NC_007503.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 99467 3726633 CHY_0116 Carboxydothermus hydrogenoformans Z-2901 MarR family transcriptional regulator YP_358988.1 99036 D 246194 CDS YP_358989.1 78044335 3727452 99464..100123 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 100123 3727452 CHY_0117 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_358989.1 99464 D 246194 CDS YP_358990.1 78044391 3727509 100120..100866 1 NC_007503.1 identified by similarity to GB:AAO75986.1; match to protein family HMM PF03649; match to protein family HMM TIGR00245; ABC transporter permease 100866 3727509 CHY_0118 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_358990.1 100120 D 246194 CDS YP_358991.1 78045189 3728315 100981..102459 1 NC_007503.1 identified by similarity to SP:O06493; match to protein family HMM PF00474; match to protein family HMM TIGR00813; osmoregulated proline transporter 102459 3728315 CHY_0119 Carboxydothermus hydrogenoformans Z-2901 osmoregulated proline transporter YP_358991.1 100981 D 246194 CDS YP_358992.1 78044039 3727154 102483..103799 1 NC_007503.1 identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 103799 paaK1 3727154 paaK1 Carboxydothermus hydrogenoformans Z-2901 phenylacetate-coenzyme A ligase YP_358992.1 102483 D 246194 CDS YP_358993.1 78043951 3726418 103803..105548 1 NC_007503.1 identified by similarity to SP:O07835; match to protein family HMM PF00037; match to protein family HMM PF02775; indolepyruvate ferredoxin oxidoreductase subunit IorA 105548 iorA 3726418 iorA Carboxydothermus hydrogenoformans Z-2901 indolepyruvate ferredoxin oxidoreductase subunit IorA YP_358993.1 103803 D 246194 CDS YP_358994.1 78044852 3727977 105541..106104 1 NC_007503.1 identified by similarity to SP:O07836; match to protein family HMM PF01558; indolepyruvate ferredoxin oxidoreductase subunit IorB 106104 iorB 3727977 iorB Carboxydothermus hydrogenoformans Z-2901 indolepyruvate ferredoxin oxidoreductase subunit IorB YP_358994.1 105541 D 246194 CDS YP_358995.1 78044417 3727535 106176..106598 1 NC_007503.1 identified by similarity to GB:AAM25663.1; hypothetical protein 106598 3727535 CHY_0123 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358995.1 106176 D 246194 CDS YP_358996.1 78043915 3726343 106601..108274 1 NC_007503.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 108274 argS 3726343 argS Carboxydothermus hydrogenoformans Z-2901 arginyl-tRNA synthetase YP_358996.1 106601 D 246194 CDS YP_358997.1 78044367 3727485 108351..109958 1 NC_007503.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 109958 pyrG 3727485 pyrG Carboxydothermus hydrogenoformans Z-2901 CTP synthetase YP_358997.1 108351 D 246194 CDS YP_358998.1 78044938 3728063 110079..110486 1 NC_007503.1 identified by match to protein family HMM PF00072; response regulator 110486 3728063 CHY_0126 Carboxydothermus hydrogenoformans Z-2901 response regulator YP_358998.1 110079 D 246194 CDS YP_358999.1 78044361 3727479 110528..111103 1 NC_007503.1 hypothetical protein 111103 3727479 CHY_0127 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_358999.1 110528 D 246194 CDS YP_359000.1 78043057 3726433 111121..111975 1 NC_007503.1 class II aldolase; catalyzes the formation of fructose 1,6-bisphosphate from dihydroxyacetone phosphate and glyceraldehyde 3-phosphate; fructose-1,6-bisphosphate aldolase 111975 fba 3726433 fba Carboxydothermus hydrogenoformans Z-2901 fructose-1,6-bisphosphate aldolase YP_359000.1 111121 D 246194 CDS YP_359001.1 78043547 3726772 111987..112631 1 NC_007503.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 112631 3726772 CHY_0129 Carboxydothermus hydrogenoformans Z-2901 translaldolase YP_359001.1 111987 D 246194 CDS YP_359002.1 78044086 3727202 112782..114059 1 NC_007503.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 114059 rho 3727202 rho Carboxydothermus hydrogenoformans Z-2901 transcription termination factor Rho YP_359002.1 112782 D 246194 CDS YP_359003.1 78044660 3727782 114056..115297 1 NC_007503.1 identified by similarity to GB:AAC98486.1; match to protein family HMM PF04055; radical SAM domain-containing protein 115297 3727782 CHY_0131 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359003.1 114056 D 246194 CDS YP_359004.1 78044092 3727208 complement(115348..115668) 1 NC_007503.1 identified by similarity to GB:CAD14040.1; match to protein family HMM PF06063; branched-chain amino acid transport protein AzlD 115668 3727208 CHY_0132 Carboxydothermus hydrogenoformans Z-2901 branched-chain amino acid transport protein AzlD YP_359004.1 115348 R 246194 CDS YP_359005.1 78043767 3726800 complement(115665..116384) 1 NC_007503.1 identified by similarity to GB:AAP08650.1; match to protein family HMM PF03591; branched-chain amino acid transport protein AzlC 116384 3726800 CHY_0133 Carboxydothermus hydrogenoformans Z-2901 branched-chain amino acid transport protein AzlC YP_359005.1 115665 R 246194 CDS YP_359006.1 78042880 3727056 116625..117377 1 NC_007503.1 identified by similarity to SP:P21822; match to protein family HMM PF00015; signal tranducer domain-containing protein 117377 3727056 CHY_0134 Carboxydothermus hydrogenoformans Z-2901 signal tranducer domain-containing protein YP_359006.1 116625 D 246194 CDS YP_359007.1 78043440 3728903 117379..118584 1 NC_007503.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 118584 3728903 CHY_0135 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359007.1 117379 D 246194 CDS YP_359008.1 78044972 3728097 118763..119101 1 NC_007503.1 hypothetical protein 119101 3728097 CHY_0136 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359008.1 118763 D 246194 CDS YP_359009.1 78044420 3727538 119098..119913 1 NC_007503.1 identified by match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; CBS/GGDEF domain-containing protein 119913 3727538 CHY_0137 Carboxydothermus hydrogenoformans Z-2901 CBS/GGDEF domain-containing protein YP_359009.1 119098 D 246194 CDS YP_359010.1 78043882 3726505 120033..121223 1 NC_007503.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 121223 metK 3726505 metK Carboxydothermus hydrogenoformans Z-2901 S-adenosylmethionine synthetase YP_359010.1 120033 D 246194 CDS YP_359011.1 78043220 3728584 121309..121596 1 NC_007503.1 hypothetical protein 121596 3728584 CHY_0139 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359011.1 121309 D 246194 CDS YP_359012.1 78042726 3726937 121602..123233 1 NC_007503.1 identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 123233 3726937 CHY_0140 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_359012.1 121602 D 246194 CDS YP_359013.1 78044784 3727908 123303..124046 1 NC_007503.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 124046 3727908 CHY_0141 Carboxydothermus hydrogenoformans Z-2901 transcriptional repressor CodY YP_359013.1 123303 D 246194 CDS YP_359014.1 78044668 3727790 124157..124249 1 NC_007503.1 hypothetical protein 124249 3727790 CHY_0142 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359014.1 124157 D 246194 CDS YP_359015.1 78042626 3727112 124319..124846 1 NC_007503.1 identified by match to protein family HMM PF04542; RNA polymerase sigma-70 factor 124846 3727112 CHY_0143 Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma-70 factor YP_359015.1 124319 D 246194 CDS YP_359016.1 78043023 3726477 124906..125142 1 NC_007503.1 identified by similarity to GB:AAP29137.1; hypothetical protein 125142 3726477 CHY_0144 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359016.1 124906 D 246194 CDS YP_359017.1 78043858 3726677 125146..125352 1 NC_007503.1 identified by similarity to GB:BAC14096.1; hypothetical protein 125352 3726677 CHY_0145 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359017.1 125146 D 246194 CDS YP_359018.1 78044399 3727517 125403..125549 1 NC_007503.1 identified by similarity to GB:AAK76911.1; hypothetical protein 125549 3727517 CHY_0146 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359018.1 125403 D 246194 CDS YP_359019.1 78042713 3726963 complement(125514..126722) 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02589; (Fe-S)-binding protein 126722 3726963 CHY_0147 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359019.1 125514 R 246194 CDS YP_359020.1 78043102 3726323 complement(126737..127699) 1 NC_007503.1 identified by similarity to SP:P96797; match to protein family HMM PF02754; reductase 127699 3726323 CHY_0148 Carboxydothermus hydrogenoformans Z-2901 reductase YP_359020.1 126737 R 246194 CDS YP_359021.1 78044284 3727401 127757..127900 1 NC_007503.1 hypothetical protein 127900 3727401 CHY_0149 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359021.1 127757 D 246194 CDS YP_359022.1 78043592 3728745 127776..127907 1 NC_007503.1 hypothetical protein 127907 3728745 CHY_0150 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359022.1 127776 D 246194 CDS YP_359023.1 78042687 3726976 127913..128662 1 NC_007503.1 identified by similarity to PIR:C97179; match to protein family HMM PF06738; hypothetical protein 128662 3726976 CHY_0151 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359023.1 127913 D 246194 CDS YP_359024.1 78044989 3728114 128679..129107 1 NC_007503.1 identified by similarity to PIR:B83660; hypothetical protein 129107 3728114 CHY_0152 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359024.1 128679 D 246194 CDS YP_359025.1 78044328 3727445 129098..129787 1 NC_007503.1 identified by similarity to SP:P31773; competence protein 129787 3727445 CHY_0153 Carboxydothermus hydrogenoformans Z-2901 competence protein YP_359025.1 129098 D 246194 CDS YP_359026.1 78044482 3727601 complement(129802..129966) 1 NC_007503.1 hypothetical protein 129966 3727601 CHY_0154 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359026.1 129802 R 246194 CDS YP_359027.1 78043760 3726793 130056..130253 1 NC_007503.1 identified by similarity to SP:Q45098; match to protein family HMM PF00313; cold shock protein CspC 130253 cspC1 3726793 cspC1 Carboxydothermus hydrogenoformans Z-2901 cold shock protein CspC YP_359027.1 130056 D 246194 CDS YP_359028.1 78044633 3727754 130360..130893 1 NC_007503.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein 130893 yfiA 3727754 yfiA Carboxydothermus hydrogenoformans Z-2901 ribosomal subunit interface protein YP_359028.1 130360 D 246194 CDS YP_359029.1 78044182 3727298 130978..131175 1 NC_007503.1 identified by similarity to SP:Q45098; match to protein family HMM PF00313; cold shock protein CspC 131175 cspC2 3727298 cspC2 Carboxydothermus hydrogenoformans Z-2901 cold shock protein CspC YP_359029.1 130978 D 246194 CDS YP_359030.1 78042825 3726842 131282..131392 1 NC_007503.1 hypothetical protein 131392 3726842 CHY_0158 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359030.1 131282 D 246194 CDS YP_359031.1 78044797 3727922 131415..132068 1 NC_007503.1 identified by similarity to GB:AAM23793.1; hypothetical protein 132068 3727922 CHY_0159 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359031.1 131415 D 246194 CDS YP_359032.1 78043869 3726688 132380..133708 1 NC_007503.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 133708 3726688 CHY_0160 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359032.1 132380 D 246194 CDS YP_359033.1 78042770 3726903 133744..134295 1 NC_007503.1 identified by similarity to GB:AAM23795.1; hypothetical protein 134295 3726903 CHY_0161 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359033.1 133744 D 246194 CDS YP_359034.1 78044472 3727591 134394..137018 1 NC_007503.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 137018 secA 3727591 secA Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecA YP_359034.1 134394 D 246194 CDS YP_359035.1 78044242 3727359 join(137034..137102,137104..138150) 1 NC_007503.1 identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2 138150 prfB 3727359 prfB Carboxydothermus hydrogenoformans Z-2901 peptide chain release factor 2 YP_359035.1 137034 D 246194 CDS YP_359036.1 78042996 3726488 138147..139010 1 NC_007503.1 identified by similarity to GB:AAM25320.1; match to protein family HMM PF02588; hypothetical protein 139010 3726488 CHY_0164 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359036.1 138147 D 246194 CDS YP_359037.1 78044530 3727649 139010..139852 1 NC_007503.1 identified by match to protein family HMM PF00456; transketolase 139852 3727649 CHY_0165 Carboxydothermus hydrogenoformans Z-2901 transketolase YP_359037.1 139010 D 246194 CDS YP_359038.1 78045200 3728326 139840..140778 1 NC_007503.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780; transketolase, C-terminal subunit 140778 3728326 CHY_0166 Carboxydothermus hydrogenoformans Z-2901 transketolase, C-terminal subunit YP_359038.1 139840 D 246194 CDS YP_359039.1 78044008 3726243 140903..141583 1 NC_007503.1 identified by similarity to SP:P10115; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 141583 ftsE 3726243 ftsE Carboxydothermus hydrogenoformans Z-2901 cell division ATP-binding protein FtsE YP_359039.1 140903 D 246194 CDS YP_359040.1 78043403 3728865 141580..142467 1 NC_007503.1 identified by similarity to SP:O34876; match to protein family HMM PF02687; cell division protein FtsX 142467 ftsX 3728865 ftsX Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsX YP_359040.1 141580 D 246194 CDS YP_359041.1 78043269 3728555 142478..143593 1 NC_007503.1 identified by similarity to GB:BAB81320.1; match to protein family HMM PF01551; M24/M37 family peptidase 143593 3728555 CHY_0169 Carboxydothermus hydrogenoformans Z-2901 M24/M37 family peptidase YP_359041.1 142478 D 246194 CDS YP_359042.1 78042870 3727085 143710..144843 1 NC_007503.1 identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease 144843 3727085 CHY_0170 Carboxydothermus hydrogenoformans Z-2901 carboxyl-terminal protease YP_359042.1 143710 D 246194 CDS YP_359043.1 78044822 3727947 144857..146077 1 NC_007503.1 identified by match to protein family HMM PF00595; hypothetical protein 146077 3727947 CHY_0171 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359043.1 144857 D 246194 CDS YP_359044.1 78043745 3726271 146157..146768 1 NC_007503.1 identified by similarity to SP:P39065; match to protein family HMM PF00583; acetoin utilization protein AcuA 146768 acuA 3726271 acuA Carboxydothermus hydrogenoformans Z-2901 acetoin utilization protein AcuA YP_359044.1 146157 D 246194 CDS YP_359045.1 78043747 3726273 146843..147475 1 NC_007503.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01842; acetoin utilization protein AcuB 147475 acuB 3726273 acuB Carboxydothermus hydrogenoformans Z-2901 acetoin utilization protein AcuB YP_359045.1 146843 D 246194 CDS YP_359046.1 78043001 3726493 147480..148631 1 NC_007503.1 identified by similarity to SP:P39067; match to protein family HMM PF00850; acetoin utilization protein AcuC 148631 acuC 3726493 acuC Carboxydothermus hydrogenoformans Z-2901 acetoin utilization protein AcuC YP_359046.1 147480 D 246194 CDS YP_359047.1 78045145 3728271 148622..148729 1 NC_007503.1 hypothetical protein 148729 3728271 CHY_0175 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359047.1 148622 D 246194 CDS YP_359048.1 78043197 3728717 complement(148692..148790) 1 NC_007503.1 hypothetical protein 148790 3728717 CHY_0176 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359048.1 148692 R 246194 CDS YP_359049.1 78044051 3727166 148813..150216 1 NC_007503.1 identified by similarity to GB:AAM23971.1; match to protein family HMM PF01139; hypothetical protein 150216 3727166 CHY_0177 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359049.1 148813 D 246194 CDS YP_359050.1 78043580 3726299 150233..150424 1 NC_007503.1 identified by similarity to OMNI:NTL01MK0731; hypothetical protein 150424 3726299 CHY_0178 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359050.1 150233 D 246194 CDS YP_359051.1 78044945 3728070 150424..151020 1 NC_007503.1 identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase 151020 3728070 CHY_0179 Carboxydothermus hydrogenoformans Z-2901 uracil-DNA glycosylase YP_359051.1 150424 D 246194 CDS YP_359052.1 78044392 3727510 complement(151090..151356) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 151356 3727510 CHY_0180 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359052.1 151090 R 246194 CDS YP_359053.1 78043419 3728784 complement(151444..151731) 1 NC_007503.1 identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 151731 3728784 CHY_0181 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur cluster-binding protein YP_359053.1 151444 R 246194 CDS YP_359054.1 78044385 3727503 151884..153041 1 NC_007503.1 hypothetical protein 153041 3727503 CHY_0182 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359054.1 151884 D 246194 CDS YP_359055.1 78043768 3726801 152983..154440 1 NC_007503.1 hypothetical protein 154440 3726801 CHY_0183 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359055.1 152983 D 246194 CDS YP_359056.1 78044336 3727453 154449..154577 1 NC_007503.1 hypothetical protein 154577 3727453 CHY_0184 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359056.1 154449 D 246194 CDS YP_359057.1 78045204 3728330 154591..155661 1 NC_007503.1 identified by similarity to OMNI:NTL01BS1364; hypothetical protein 155661 3728330 CHY_0185 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359057.1 154591 D 246194 CDS YP_359058.1 78043003 3726495 155673..156140 1 NC_007503.1 identified by similarity to GB:AAL80726.1; match to protein family HMM PF01613; flavin reductase domain-containing protein 156140 3726495 CHY_0186 Carboxydothermus hydrogenoformans Z-2901 flavin reductase domain-containing protein YP_359058.1 155673 D 246194 CDS YP_359059.1 78042988 3726480 complement(156137..156568) 1 NC_007503.1 identified by similarity to PIR:A69865; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 156568 3726480 CHY_0187 Carboxydothermus hydrogenoformans Z-2901 ErfK/YbiS/YcfS/YnhG family protein YP_359059.1 156137 R 246194 CDS YP_359060.1 78044899 3728024 156534..157400 1 NC_007503.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 157400 ispE 3728024 ispE Carboxydothermus hydrogenoformans Z-2901 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_359060.1 156534 D 246194 CDS YP_359061.1 78045171 3728297 157452..158141 1 NC_007503.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 158141 3728297 CHY_0189 Carboxydothermus hydrogenoformans Z-2901 GntR family transcriptional regulator YP_359061.1 157452 D 246194 CDS YP_359062.1 78042945 3727005 158134..158877 1 NC_007503.1 identified by similarity to GB:AAM25681.1; hypothetical protein 158877 3727005 CHY_0190 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359062.1 158134 D 246194 CDS YP_359063.1 78043335 3728524 158911..160116 1 NC_007503.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 160116 ilvA1 3728524 ilvA1 Carboxydothermus hydrogenoformans Z-2901 threonine dehydratase YP_359063.1 158911 D 246194 CDS YP_359064.1 78044455 3727574 160130..161470 1 NC_007503.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase 161470 glmU 3727574 glmU Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylglucosamine pyrophosphorylase YP_359064.1 160130 D 246194 CDS YP_359065.1 78044887 3728012 161577..162518 1 NC_007503.1 identified by similarity to SP:P14193; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase 162518 prs 3728012 prs Carboxydothermus hydrogenoformans Z-2901 ribose-phosphate pyrophosphokinase YP_359065.1 161577 D 246194 CDS YP_359066.1 78042672 3728498 complement(162515..163012) 1 NC_007503.1 identified by similarity to PIR:B75462; hypothetical protein 163012 3728498 CHY_0194 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359066.1 162515 R 246194 CDS YP_359067.1 78042985 3726555 163198..163791 1 NC_007503.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 163791 rplY 3726555 rplY Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L25 YP_359067.1 163198 D 246194 CDS YP_359068.1 78043715 3726668 163814..164377 1 NC_007503.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 164377 pth 3726668 pth Carboxydothermus hydrogenoformans Z-2901 peptidyl-tRNA hydrolase YP_359068.1 163814 D 246194 CDS YP_359069.1 78043733 3728478 164389..164769 1 NC_007503.1 identified by similarity to GB:AAM25690.1; hypothetical protein 164769 3728478 CHY_0197 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359069.1 164389 D 246194 CDS YP_359070.1 78043426 3728791 complement(164749..164922) 1 NC_007503.1 hypothetical protein 164922 3728791 CHY_0198 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359070.1 164749 R 246194 CDS YP_359071.1 78044576 3727696 164783..164944 1 NC_007503.1 hypothetical protein 164944 3727696 CHY_0199 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359071.1 164783 D 246194 CDS YP_359072.1 78043233 3728597 164941..168423 1 NC_007503.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor 168423 mfd 3728597 mfd Carboxydothermus hydrogenoformans Z-2901 transcription-repair coupling factor YP_359072.1 164941 D 246194 CDS YP_359073.1 78045210 3728336 168482..169495 1 NC_007503.1 identified by similarity to SP:P77241; match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase, PpiC-type 169495 3728336 CHY_0201 Carboxydothermus hydrogenoformans Z-2901 peptidyl-prolyl cis-trans isomerase, PpiC-type YP_359073.1 168482 D 246194 CDS YP_359074.1 78044362 3727480 169573..170133 1 NC_007503.1 identified by similarity to SP:P37554; match to protein family HMM PF04014; match to protein family HMM TIGR01439; stage V sporulation protein T 170133 spoVT 3727480 spoVT Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein T YP_359074.1 169573 D 246194 CDS YP_359075.1 78043488 3728815 complement(170189..171001) 1 NC_007503.1 This gene assignment is based partly on a multiple alignment of the best blast matches.; identified by match to protein family HMM PF07605; hypothetical protein 171001 3728815 CHY_0203 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359075.1 170189 R 246194 CDS YP_359076.1 78044244 3727361 171130..172569 1 NC_007503.1 identified by similarity to GB:AAP24110.1; match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444; tetrapyrrole methylase/MazG family protein 172569 3727361 CHY_0204 Carboxydothermus hydrogenoformans Z-2901 tetrapyrrole methylase/MazG family protein YP_359076.1 171130 D 246194 CDS YP_359077.1 78045062 3728188 172677..172946 1 NC_007503.1 identified by similarity to SP:P02346; match to protein family HMM PF00216; DNA-binding protein HU 172946 huP 3728188 huP Carboxydothermus hydrogenoformans Z-2901 DNA-binding protein HU YP_359077.1 172677 D 246194 CDS YP_359078.1 78042798 3726854 173044..173982 1 NC_007503.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669; SpoIID/LytB domain-containing protein 173982 3726854 CHY_0206 Carboxydothermus hydrogenoformans Z-2901 SpoIID/LytB domain-containing protein YP_359078.1 173044 D 246194 CDS YP_359079.1 78043519 3726568 174051..174329 1 NC_007503.1 identified by similarity to OMNI:NTL01OI0068; hypothetical protein 174329 3726568 CHY_0207 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359079.1 174051 D 246194 CDS YP_359080.1 78043669 3726700 174308..174631 1 NC_007503.1 hypothetical protein 174631 3726700 CHY_0208 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359080.1 174308 D 246194 CDS YP_359081.1 78042969 3726538 174745..174978 1 NC_007503.1 identified by similarity to PIR:T35281; hypothetical protein 174978 3726538 CHY_0209 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359081.1 174745 D 246194 CDS YP_359082.1 78043729 3728474 174978..175301 1 NC_007503.1 identified by similarity to GB:AAM25577.1; match to protein family HMM PF04977; hypothetical protein 175301 3728474 CHY_0210 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359082.1 174978 D 246194 CDS YP_359083.1 78043933 3726400 175285..176172 1 NC_007503.1 identified by match to protein family HMM PF02541; Ppx/GppA phosphatase 176172 3726400 CHY_0211 Carboxydothermus hydrogenoformans Z-2901 Ppx/GppA phosphatase YP_359083.1 175285 D 246194 CDS YP_359084.1 78042785 3726880 176242..178641 1 NC_007503.1 identified by similarity to SP:P37475; match to protein family HMM PF07228; stage II sporulation protein E 178641 3726880 CHY_0212 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein E YP_359084.1 176242 D 246194 CDS YP_359085.1 78043578 3726297 178622..179971 1 NC_007503.1 identified by similarity to PIR:T31465; match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 179971 tilS 3726297 tilS Carboxydothermus hydrogenoformans Z-2901 tRNA(Ile)-lysidine synthetase YP_359085.1 178622 D 246194 CDS YP_359086.1 78043977 3726212 180029..181888 1 NC_007503.1 identified by similarity to SP:P37476; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH 181888 ftsH 3726212 ftsH Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsH YP_359086.1 180029 D 246194 CDS YP_359087.1 78044290 3727407 181954..182403 1 NC_007503.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 182403 ndk 3727407 ndk Carboxydothermus hydrogenoformans Z-2901 nucleoside diphosphate kinase YP_359087.1 181954 D 246194 CDS YP_359088.1 78042845 3727099 182543..183649 1 NC_007503.1 identified by similarity to SP:P39209; match to protein family HMM PF00015; methyl-accepting chemotaxis protein 183649 3727099 CHY_0216 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359088.1 182543 D 246194 CDS YP_359089.1 78043239 3728622 183770..184876 1 NC_007503.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 184876 3728622 CHY_0217 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359089.1 183770 D 246194 CDS YP_359090.1 78043917 3726345 complement(184903..187431) 1 NC_007503.1 identified by match to protein family HMM TIGR01905; doubled CXXCH domain-containing protein 187431 3726345 CHY_0218 Carboxydothermus hydrogenoformans Z-2901 doubled CXXCH domain-containing protein YP_359090.1 184903 R 246194 CDS YP_359091.1 78043165 3728684 187584..189989 1 NC_007503.1 identified by match to protein family HMM PF04932; O-antigen polymerase 189989 3728684 CHY_0219 Carboxydothermus hydrogenoformans Z-2901 O-antigen polymerase YP_359091.1 187584 D 246194 CDS YP_359092.1 78045052 3728178 190372..191724 1 NC_007503.1 NapC/NirT family cyctochrome c 191724 3728178 CHY_0220 Carboxydothermus hydrogenoformans Z-2901 NapC/NirT family cyctochrome c YP_359092.1 190372 D 246194 CDS YP_359093.1 78044885 3728010 191741..192397 1 NC_007503.1 identified by similarity to GB:AAL93886.1; match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 192397 3728010 CHY_0221 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359093.1 191741 D 246194 CDS YP_359094.1 78045198 3728324 192410..193417 1 NC_007503.1 identified by match to protein family HMM PF01436; NHL repeat-containing protein 193417 3728324 CHY_0222 Carboxydothermus hydrogenoformans Z-2901 NHL repeat-containing protein YP_359094.1 192410 D 246194 CDS YP_359095.1 78042993 3726485 193648..193989 1 NC_007503.1 hypothetical protein 193989 3726485 CHY_0223 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359095.1 193648 D 246194 CDS YP_359096.1 78045141 3728267 193956..194054 1 NC_007503.1 hypothetical protein 194054 3728267 CHY_0224 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359096.1 193956 D 246194 CDS YP_359097.1 78043406 3728868 194083..194706 1 NC_007503.1 hypothetical protein 194706 3728868 CHY_0225 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359097.1 194083 D 246194 CDS YP_359098.1 78044707 3727829 complement(194785..195492) 1 NC_007503.1 identified by similarity to GB:BAC56939.1; methyltransferase 195492 3727829 CHY_0226 Carboxydothermus hydrogenoformans Z-2901 methyltransferase YP_359098.1 194785 R 246194 CDS YP_359099.1 78044939 3728064 complement(195506..196480) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 196480 3728064 CHY_0227 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359099.1 195506 R 246194 CDS YP_359100.1 78044344 3727461 196592..196738 1 NC_007503.1 hypothetical protein 196738 3727461 CHY_0228 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359100.1 196592 D 246194 CDS YP_359101.1 78042906 3727044 196711..198003 1 NC_007503.1 identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 198003 3727044 CHY_0229 Carboxydothermus hydrogenoformans Z-2901 DEAD/DEAH box helicase YP_359101.1 196711 D 246194 CDS YP_359102.1 78043984 3726219 198206..198721 1 NC_007503.1 identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357; proton-coupled thiamine transporter YuaJ 198721 3726219 CHY_0230 Carboxydothermus hydrogenoformans Z-2901 proton-coupled thiamine transporter YuaJ YP_359102.1 198206 D 246194 CDS YP_359103.1 78044035 3727150 198722..199333 1 NC_007503.1 identified by similarity to GB:AAO35797.1; match to protein family HMM PF04263; match to protein family HMM TIGR01378; thiamine pyrophosphokinase 199333 3727150 CHY_0231 Carboxydothermus hydrogenoformans Z-2901 thiamine pyrophosphokinase YP_359103.1 198722 D 246194 CDS YP_359104.1 78043552 3726777 199330..199437 1 NC_007503.1 hypothetical protein 199437 3726777 CHY_0232 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359104.1 199330 D 246194 CDS YP_359105.1 78043469 3728853 199655..201406 1 NC_007503.1 identified by similarity to GP:3628767; cytochrome c 201406 3728853 CHY_0233 Carboxydothermus hydrogenoformans Z-2901 cytochrome c YP_359105.1 199655 D 246194 CDS YP_359106.1 78042881 3727057 201552..202931 1 NC_007503.1 NapC/NirT family cyctochrome c 202931 3727057 CHY_0234 Carboxydothermus hydrogenoformans Z-2901 NapC/NirT family cyctochrome c YP_359106.1 201552 D 246194 CDS YP_359107.1 78042808 3726864 complement(202973..203242) 1 NC_007503.1 identified by similarity to GB:AAM25057.1; hypothetical protein 203242 3726864 CHY_0235 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359107.1 202973 R 246194 CDS YP_359108.1 78043512 3726561 complement(203373..204062) 1 NC_007503.1 identified by similarity to OMNI:SO0727; match to protein family HMM PF02001; match to protein family HMM PF02579; hypothetical protein 204062 3726561 CHY_0236 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359108.1 203373 R 246194 CDS YP_359109.1 78042817 3726834 complement(204134..204775) 1 NC_007503.1 identified by similarity to SP:Q47675; match to protein family HMM PF01255; undecaprenyl diphosphate synthase 204775 3726834 CHY_0237 Carboxydothermus hydrogenoformans Z-2901 undecaprenyl diphosphate synthase YP_359109.1 204134 R 246194 CDS YP_359110.1 78043502 3726609 complement(204791..206011) 1 NC_007503.1 identified by similarity to GB:AAM25588.1; match to protein family HMM PF05977; match to protein family HMM PF07690; transporter 206011 3726609 CHY_0238 Carboxydothermus hydrogenoformans Z-2901 transporter YP_359110.1 204791 R 246194 CDS YP_359111.1 78043246 3728629 206121..207515 1 NC_007503.1 catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase 207515 pgi 3728629 pgi Carboxydothermus hydrogenoformans Z-2901 glucose-6-phosphate isomerase YP_359111.1 206121 D 246194 CDS YP_359112.1 78044199 3727316 complement(207571..208266) 1 NC_007503.1 identified by match to protein family HMM PF00702; haloacid dehalogenase 208266 3727316 CHY_0240 Carboxydothermus hydrogenoformans Z-2901 haloacid dehalogenase YP_359112.1 207571 R 246194 CDS YP_359113.1 78044896 3728021 complement(208294..208401) 1 NC_007503.1 hypothetical protein 208401 3728021 CHY_0241 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359113.1 208294 R 246194 CDS YP_359114.1 78042788 3726883 208459..208872 1 NC_007503.1 identified by similarity to SP:Q9S1E6; cytochrome c-type protein NrfH 208872 3726883 CHY_0242 Carboxydothermus hydrogenoformans Z-2901 cytochrome c-type protein NrfH YP_359114.1 208459 D 246194 CDS YP_359115.1 78042886 3727062 208895..210160 1 NC_007503.1 identified by similarity to SP:Q9S1E5; match to protein family HMM PF02335; cytochrome c552 210160 nrfA 3727062 nrfA Carboxydothermus hydrogenoformans Z-2901 cytochrome c552 YP_359115.1 208895 D 246194 CDS YP_359116.1 78043726 3728471 complement(210240..210608) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 210608 3728471 CHY_0244 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359116.1 210240 R 246194 CDS YP_359117.1 78044097 3727213 210845..210973 1 NC_007503.1 hypothetical protein 210973 3727213 CHY_0245 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359117.1 210845 D 246194 CDS YP_359118.1 78044605 3727726 211097..212491 1 NC_007503.1 Mur ligase 212491 3727726 CHY_0246 Carboxydothermus hydrogenoformans Z-2901 Mur ligase YP_359118.1 211097 D 246194 CDS YP_359119.1 78043150 3728513 212491..213267 1 NC_007503.1 identified by similarity to OMNI:NTL01TT0007; match to protein family HMM PF07685; hypothetical protein 213267 3728513 CHY_0247 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359119.1 212491 D 246194 CDS YP_359120.1 78044104 3727220 213288..213383 1 NC_007503.1 hypothetical protein 213383 3727220 CHY_0248 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359120.1 213288 D 246194 CDS YP_359121.1 78044347 3727464 213447..215330 1 NC_007503.1 identified by similarity to SP:P27095; match to protein family HMM PF00501; acetyl-coenzyme A synthetase 215330 acsA 3727464 acsA Carboxydothermus hydrogenoformans Z-2901 acetyl-coenzyme A synthetase YP_359121.1 213447 D 246194 CDS YP_359122.1 78043018 3726471 215386..215571 1 NC_007503.1 hypothetical protein 215571 3726471 CHY_0250 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359122.1 215386 D 246194 CDS YP_359123.1 78043753 3726279 215590..215685 1 NC_007503.1 hypothetical protein 215685 3726279 CHY_0251 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359123.1 215590 D 246194 CDS YP_359124.1 78044499 3727618 215672..217309 1 NC_007503.1 hypothetical protein 217309 3727618 CHY_0252 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359124.1 215672 D 246194 CDS YP_359125.1 78045174 3728300 217349..217807 1 NC_007503.1 identified by match to protein family HMM PF01042; endoribonuclease L-PSP 217807 3728300 CHY_0253 Carboxydothermus hydrogenoformans Z-2901 endoribonuclease L-PSP YP_359125.1 217349 D 246194 CDS YP_359126.1 78045033 3728158 complement(217804..218205) 1 NC_007503.1 hypothetical protein 218205 3728158 CHY_0254 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359126.1 217804 R 246194 CDS YP_359127.1 78042633 3727119 218262..218768 1 NC_007503.1 identified by similarity to SP:P21861; match to protein family HMM PF00583; phosphinothricin N-acetyltransferase 218768 3727119 CHY_0255 Carboxydothermus hydrogenoformans Z-2901 phosphinothricin N-acetyltransferase YP_359127.1 218262 D 246194 CDS YP_359128.1 78045043 3728169 complement(218802..219002) 1 NC_007503.1 hypothetical protein 219002 3728169 CHY_0256 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359128.1 218802 R 246194 CDS YP_359129.1 78043052 3726428 219050..219766 1 NC_007503.1 identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator 219766 3726428 CHY_0257 Carboxydothermus hydrogenoformans Z-2901 Sir2 family transcriptional regulator YP_359129.1 219050 D 246194 CDS YP_359130.1 78043646 3728448 219819..221807 1 NC_007503.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 221807 uvrB 3728448 uvrB Carboxydothermus hydrogenoformans Z-2901 excinuclease ABC subunit B YP_359130.1 219819 D 246194 CDS YP_359131.1 78044591 3727712 221829..224651 1 NC_007503.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 224651 uvrA 3727712 uvrA Carboxydothermus hydrogenoformans Z-2901 excinuclease ABC subunit A YP_359131.1 221829 D 246194 CDS YP_359132.1 78044469 3727588 complement(224687..226714) 1 NC_007503.1 hypothetical protein 226714 3727588 CHY_0260 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359132.1 224687 R 246194 CDS YP_359133.1 78044706 3727828 complement(226872..226988) 1 NC_007503.1 hypothetical protein 226988 3727828 CHY_0261 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359133.1 226872 R 246194 CDS YP_359134.1 78043707 3726659 226975..228657 1 NC_007503.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase 228657 3726659 CHY_0262 Carboxydothermus hydrogenoformans Z-2901 hydantoinase/oxoprolinase YP_359134.1 226975 D 246194 CDS YP_359135.1 78043060 3726436 228650..229951 1 NC_007503.1 identified by match to protein family HMM PF00850; histone deacetylase domain-containing protein 229951 3726436 CHY_0263 Carboxydothermus hydrogenoformans Z-2901 histone deacetylase domain-containing protein YP_359135.1 228650 D 246194 CDS YP_359136.1 78044289 3727406 230087..232237 1 NC_007503.1 identified by similarity to GB:AAD44021.1; match to protein family HMM PF02629; acetyl-CoA synthase 232237 3727406 CHY_0264 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA synthase YP_359136.1 230087 D 246194 CDS YP_359137.1 78043577 3726296 232334..232567 1 NC_007503.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR02609; AbrB family transcriptional regulator 232567 3726296 CHY_0265 Carboxydothermus hydrogenoformans Z-2901 AbrB family transcriptional regulator YP_359137.1 232334 D 246194 CDS YP_359138.1 78042837 3727091 232564..232947 1 NC_007503.1 identified by similarity to PIR:G95102; hypothetical protein 232947 3727091 CHY_0266 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359138.1 232564 D 246194 CDS YP_359139.1 78044731 3727854 232950..234773 1 NC_007503.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM TIGR00194; excinuclease ABC subunit C 234773 uvrC 3727854 uvrC Carboxydothermus hydrogenoformans Z-2901 excinuclease ABC subunit C YP_359139.1 232950 D 246194 CDS YP_359140.1 78043283 3728726 234778..235578 1 NC_007503.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484; HAD family hydrolase 235578 3728726 CHY_0268 Carboxydothermus hydrogenoformans Z-2901 HAD family hydrolase YP_359140.1 234778 D 246194 CDS YP_359141.1 78042702 3726952 235597..236619 1 NC_007503.1 identified by match to protein family HMM PF01070; FMN-dependent family dehydrogenase 236619 3726952 CHY_0269 Carboxydothermus hydrogenoformans Z-2901 FMN-dependent family dehydrogenase YP_359141.1 235597 D 246194 CDS YP_359142.1 78043126 3728664 236621..237577 1 NC_007503.1 identified by similarity to SP:P54495; match to protein family HMM PF00480; match to protein family HMM TIGR00744; glucokinase 237577 glcK 3728664 glcK Carboxydothermus hydrogenoformans Z-2901 glucokinase YP_359142.1 236621 D 246194 CDS YP_359143.1 78045190 3728316 237591..238334 1 NC_007503.1 identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 238334 3728316 CHY_0271 Carboxydothermus hydrogenoformans Z-2901 phosphotransferase domain-containing protein YP_359143.1 237591 D 246194 CDS YP_359144.1 78044116 3727232 238350..239219 1 NC_007503.1 identified by similarity to GB:AAO36958.1; match to protein family HMM PF03668; hypothetical protein 239219 3727232 CHY_0272 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359144.1 238350 D 246194 CDS YP_359145.1 78043705 3726657 239224..240450 1 NC_007503.1 identified by similarity to SP:Q97LP2; match to protein family HMM PF01933; match to protein family HMM TIGR01826; hypothetical protein 240450 3726657 CHY_0273 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359145.1 239224 D 246194 CDS YP_359146.1 78044641 3727763 240469..241407 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 241407 3727763 CHY_0274 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_359146.1 240469 D 246194 CDS YP_359147.1 78044140 3727256 241426..242361 1 NC_007503.1 identified by similarity to OMNI:NTL01OI2466; match to protein family HMM PF02650; match to protein family HMM TIGR00647; hypothetical protein 242361 3727256 CHY_0275 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359147.1 241426 D 246194 CDS YP_359148.1 78044467 3727586 242361..243335 1 NC_007503.1 hypothetical protein 243335 3727586 CHY_0276 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359148.1 242361 D 246194 CDS YP_359149.1 78042659 3728484 243332..243820 1 NC_007503.1 identified by similarity to SP:P07464; match to protein family HMM PF00132; hexapeptide transferase 243820 3728484 CHY_0277 Carboxydothermus hydrogenoformans Z-2901 hexapeptide transferase YP_359149.1 243332 D 246194 CDS YP_359150.1 78045229 3728355 243813..244400 1 NC_007503.1 identified by match to protein family HMM PF07187; hypothetical protein 244400 3728355 CHY_0278 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359150.1 243813 D 246194 CDS YP_359151.1 78044494 3727613 244471..245850 1 NC_007503.1 identified by similarity to SP:P24255; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395; RNA polymerase sigma-54 factor 245850 rpoN 3727613 rpoN Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma-54 factor YP_359151.1 244471 D 246194 CDS YP_359152.1 78043763 3726796 246170..247177 1 NC_007503.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase 247177 gap 3726796 gap Carboxydothermus hydrogenoformans Z-2901 glyceraldehyde-3-phosphate dehydrogenase YP_359152.1 246170 D 246194 CDS YP_359153.1 78044457 3727576 247230..248414 1 NC_007503.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 248414 pgk 3727576 pgk Carboxydothermus hydrogenoformans Z-2901 phosphoglycerate kinase YP_359153.1 247230 D 246194 CDS YP_359154.1 78044231 3727348 248431..249186 1 NC_007503.1 identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 249186 tpiA 3727348 tpiA Carboxydothermus hydrogenoformans Z-2901 triosephosphate isomerase YP_359154.1 248431 D 246194 CDS YP_359155.1 78042968 3726537 249199..250719 1 NC_007503.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 250719 gpmI 3726537 gpmI Carboxydothermus hydrogenoformans Z-2901 phosphoglyceromutase YP_359155.1 249199 D 246194 CDS YP_359156.1 78042740 3726912 250744..252030 1 NC_007503.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 252030 eno 3726912 eno Carboxydothermus hydrogenoformans Z-2901 phosphopyruvate hydratase YP_359156.1 250744 D 246194 CDS YP_359157.1 78044803 3727928 252185..252418 1 NC_007503.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 252418 secG 3727928 secG Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecG YP_359157.1 252185 D 246194 CDS YP_359158.1 78043894 3726517 252458..254518 1 NC_007503.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 254518 hppA 3726517 hppA Carboxydothermus hydrogenoformans Z-2901 membrane-bound proton-translocating pyrophosphatase YP_359158.1 252458 D 246194 CDS YP_359159.1 78042955 3726817 254632..255039 1 NC_007503.1 identified by similarity to PIR:T34819; match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase 255039 3726817 CHY_0287 Carboxydothermus hydrogenoformans Z-2901 thioesterase YP_359159.1 254632 D 246194 CDS YP_359160.1 78045070 3728196 255039..255590 1 NC_007503.1 identified by similarity to GB:AAM24237.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 255590 3728196 CHY_0288 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359160.1 255039 D 246194 CDS YP_359161.1 78044313 3727430 255680..257854 1 NC_007503.1 identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 257854 rnr 3727430 rnr Carboxydothermus hydrogenoformans Z-2901 ribonuclease R YP_359161.1 255680 D 246194 CDS YP_359162.1 78043075 3726392 257939..258388 1 NC_007503.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 258388 smpB 3726392 smpB Carboxydothermus hydrogenoformans Z-2901 SsrA-binding protein YP_359162.1 257939 D 246194 CDS YP_359163.1 78044900 3728025 complement(258853..259191) 1 NC_007503.1 resolvase site-specific recombinase 259191 3728025 CHY_0292 Carboxydothermus hydrogenoformans Z-2901 resolvase site-specific recombinase YP_359163.1 258853 R 246194 CDS YP_359164.1 78043888 3726511 complement(259283..259783) 1 NC_007503.1 identified by similarity to GB:AAM73469.1; twitching motility protein PilT 259783 3726511 CHY_0293 Carboxydothermus hydrogenoformans Z-2901 twitching motility protein PilT YP_359164.1 259283 R 246194 CDS YP_359165.1 78044508 3727627 complement(259780..260961) 1 NC_007503.1 identified by similarity to GB:AAM73468.1; match to protein family HMM PF06114; hypothetical protein 260961 3727627 CHY_0294 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359165.1 259780 R 246194 CDS YP_359166.1 78044100 3727216 complement(261103..261696) 1 NC_007503.1 identified by match to protein family HMM PF04471; type II restriction endonuclease 261696 3727216 CHY_0295 Carboxydothermus hydrogenoformans Z-2901 type II restriction endonuclease YP_359166.1 261103 R 246194 CDS YP_359167.1 78044664 3727786 complement(261741..261845) 1 NC_007503.1 hypothetical protein 261845 3727786 CHY_0296 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359167.1 261741 R 246194 CDS YP_359168.1 78042911 3727010 complement(261859..263169) 1 NC_007503.1 identified by similarity to GB:AAL98327.1; hypothetical protein 263169 3727010 CHY_0297 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359168.1 261859 R 246194 CDS YP_359169.1 78044567 3727686 complement(263423..263563) 1 NC_007503.1 hypothetical protein 263563 3727686 CHY_0298 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359169.1 263423 R 246194 CDS YP_359170.1 78043735 3728480 263659..263769 1 NC_007503.1 hypothetical protein 263769 3728480 CHY_0299 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359170.1 263659 D 246194 CDS YP_359171.1 78043524 3726573 263865..264305 1 NC_007503.1 identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5`-triphosphate nucleotidohydrolase 264305 dut 3726573 dut Carboxydothermus hydrogenoformans Z-2901 deoxyuridine 5`-triphosphate nucleotidohydrolase YP_359171.1 263865 D 246194 CDS YP_359172.1 78043927 3726355 264586..266289 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 266289 3726355 CHY_0302 Carboxydothermus hydrogenoformans Z-2901 sensory box histidine kinase YP_359172.1 264586 D 246194 CDS YP_359173.1 78042967 3726829 266433..267338 1 NC_007503.1 identified by similarity to GB:AAM25514.1; hypothetical protein 267338 3726829 CHY_0303 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359173.1 266433 D 246194 CDS YP_359174.1 78044166 3727282 complement(267335..267979) 1 NC_007503.1 identified by similarity to GB:AAO35263.1; match to protein family HMM PF01471; match to protein family HMM PF03734; peptidoglycan-binding protein 267979 3727282 CHY_0304 Carboxydothermus hydrogenoformans Z-2901 peptidoglycan-binding protein YP_359174.1 267335 R 246194 CDS YP_359175.1 78044861 3727986 268074..268649 1 NC_007503.1 identified by similarity to SP:P39072; germination protein GerM 268649 3727986 CHY_0305 Carboxydothermus hydrogenoformans Z-2901 germination protein GerM YP_359175.1 268074 D 246194 CDS YP_359176.1 78043344 3728533 268858..269655 1 NC_007503.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 269655 murI 3728533 murI Carboxydothermus hydrogenoformans Z-2901 glutamate racemase YP_359176.1 268858 D 246194 CDS YP_359177.1 78044463 3727582 269652..270065 1 NC_007503.1 converts methylaspartate to L-glutamate; methylaspartate mutase subunit S 270065 mamA 3727582 mamA Carboxydothermus hydrogenoformans Z-2901 methylaspartate mutase subunit S YP_359177.1 269652 D 246194 CDS YP_359178.1 78044948 3728073 270078..271430 1 NC_007503.1 identified by match to protein family HMM TIGR01319; hypothetical protein 271430 3728073 CHY_0308 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359178.1 270078 D 246194 CDS YP_359179.1 78043195 3728715 271452..272900 1 NC_007503.1 identified by match to protein family HMM PF06368; match to protein family HMM TIGR01503; methylaspartate mutase subunit E 272900 mutE 3728715 mutE Carboxydothermus hydrogenoformans Z-2901 methylaspartate mutase subunit E YP_359179.1 271452 D 246194 CDS YP_359180.1 78044123 3727239 272909..273883 1 NC_007503.1 identified by similarity to PIR:F97344; match to protein family HMM PF06050; hypothetical protein 273883 3727239 CHY_0310 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359180.1 272909 D 246194 CDS YP_359181.1 78044350 3727468 273890..274651 1 NC_007503.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 274651 3727468 CHY_0311 Carboxydothermus hydrogenoformans Z-2901 CoA-substrate-specific enzyme activase YP_359181.1 273890 D 246194 CDS YP_359182.1 78043784 3726640 274651..275379 1 NC_007503.1 identified by similarity to GB:AAM24196.1; match to protein family HMM PF00753; metallo-beta-lactamase 275379 3726640 CHY_0312 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_359182.1 274651 D 246194 CDS YP_359183.1 78044376 3727494 275376..276278 1 NC_007503.1 hypothetical protein 276278 3727494 CHY_0313 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359183.1 275376 D 246194 CDS YP_359184.1 78042648 3726312 276278..277042 1 NC_007503.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 277042 rph 3726312 rph Carboxydothermus hydrogenoformans Z-2901 ribonuclease PH YP_359184.1 276278 D 246194 CDS YP_359185.1 78043192 3728711 277017..277625 1 NC_007503.1 identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 277625 3728711 CHY_0315 Carboxydothermus hydrogenoformans Z-2901 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_359185.1 277017 D 246194 CDS YP_359186.1 78044258 3727375 277610..278080 1 NC_007503.1 identified by similarity to GB:AAM23890.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 278080 3727375 CHY_0316 Carboxydothermus hydrogenoformans Z-2901 phosphoesterase YP_359186.1 277610 D 246194 CDS YP_359187.1 78044834 3727959 279138..280421 1 NC_007503.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 280421 tig 3727959 tig Carboxydothermus hydrogenoformans Z-2901 trigger factor YP_359187.1 279138 D 246194 CDS YP_359188.1 78043074 3726391 280446..281033 1 NC_007503.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 281033 clpP 3726391 clpP Carboxydothermus hydrogenoformans Z-2901 ATP-dependent Clp protease proteolytic subunit YP_359188.1 280446 D 246194 CDS YP_359189.1 78043800 3726618 281050..282306 1 NC_007503.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 282306 clpX 3726618 clpX Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease ATP-binding subunit ClpX YP_359189.1 281050 D 246194 CDS YP_359190.1 78044193 3727310 282425..282517 1 NC_007503.1 hypothetical protein 282517 3727310 CHY_0327 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359190.1 282425 D 246194 CDS YP_359191.1 78042794 3726850 282566..282706 1 NC_007503.1 hypothetical protein 282706 3726850 CHY_0328 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359191.1 282566 D 246194 CDS YP_359192.1 78044943 3728068 282751..284394 1 NC_007503.1 identified by similarity to SP:P42425; match to protein family HMM PF00004; match to protein family HMM PF05362; ATP-dependent protease La 284394 3728068 CHY_0329 Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease La YP_359192.1 282751 D 246194 CDS YP_359193.1 78044069 3727185 284456..286840 1 NC_007503.1 identified by similarity to SP:P36772; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 286840 lon 3727185 lon Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease La YP_359193.1 284456 D 246194 CDS YP_359194.1 78043828 3728438 complement(286866..287774) 1 NC_007503.1 hypothetical protein 287774 3728438 CHY_0331 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359194.1 286866 R 246194 CDS YP_359195.1 78044865 3727990 287818..287928 1 NC_007503.1 hypothetical protein 287928 3727990 CHY_0332 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359195.1 287818 D 246194 CDS YP_359196.1 78043597 3728750 288023..288115 1 NC_007503.1 hypothetical protein 288115 3728750 CHY_0333 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359196.1 288023 D 246194 CDS YP_359197.1 78044410 3727528 288145..290781 1 NC_007503.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 290781 valS 3727528 valS Carboxydothermus hydrogenoformans Z-2901 valyl-tRNA synthetase YP_359197.1 288145 D 246194 CDS YP_359198.1 78044302 3727419 290771..292069 1 NC_007503.1 identified by similarity to SP:Q05865; match to protein family HMM PF02875; match to protein family HMM TIGR01499; folylpolyglutamate synthase 292069 folC 3727419 folC Carboxydothermus hydrogenoformans Z-2901 folylpolyglutamate synthase YP_359198.1 290771 D 246194 CDS YP_359199.1 78043444 3728907 292211..293809 1 NC_007503.1 identified by similarity to SP:P49939; match to protein family HMM PF03323; spore germination protein GerKA 293809 gerKA 3728907 gerKA Carboxydothermus hydrogenoformans Z-2901 spore germination protein GerKA YP_359199.1 292211 D 246194 CDS YP_359200.1 78044044 3727159 293806..294963 1 NC_007503.1 identified by similarity to SP:P49941; match to protein family HMM PF05504; spore germination protein 294963 3727159 CHY_0337 Carboxydothermus hydrogenoformans Z-2901 spore germination protein YP_359200.1 293806 D 246194 CDS YP_359201.1 78043087 3726365 294965..295192 1 NC_007503.1 identified by similarity to OMNI:NTL01CAA0017; hypothetical protein 295192 3726365 CHY_0338 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359201.1 294965 D 246194 CDS YP_359202.1 78044604 3727725 295356..295982 1 NC_007503.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 295982 3727725 CHY_0339 Carboxydothermus hydrogenoformans Z-2901 redox-sensing transcriptional repressor Rex YP_359202.1 295356 D 246194 CDS YP_359203.1 78045150 3728276 296078..296638 1 NC_007503.1 identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 296638 maf 3728276 maf Carboxydothermus hydrogenoformans Z-2901 maf protein YP_359203.1 296078 D 246194 CDS YP_359204.1 78042658 3726322 296638..297318 1 NC_007503.1 identified by similarity to SP:P25531; match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC 297318 radC 3726322 radC Carboxydothermus hydrogenoformans Z-2901 DNA repair protein RadC YP_359204.1 296638 D 246194 CDS YP_359205.1 78044889 3728014 297334..298380 1 NC_007503.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 298380 mreB 3728014 mreB Carboxydothermus hydrogenoformans Z-2901 rod shape-determining protein MreB YP_359205.1 297334 D 246194 CDS YP_359206.1 78044174 3727290 298386..299207 1 NC_007503.1 identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219; cell shape-determining protein MreC 299207 mreC 3727290 mreC Carboxydothermus hydrogenoformans Z-2901 cell shape-determining protein MreC YP_359206.1 298386 D 246194 CDS YP_359207.1 78043106 3726327 299225..299710 1 NC_007503.1 identified by similarity to GB:CAA74599.1; rod shape-determining protein MreD 299710 mreD 3726327 mreD Carboxydothermus hydrogenoformans Z-2901 rod shape-determining protein MreD YP_359207.1 299225 D 246194 CDS YP_359208.1 78043714 3726667 299740..301692 1 NC_007503.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan biosynthesis transpeptidase 301692 3726667 CHY_0345 Carboxydothermus hydrogenoformans Z-2901 peptidoglycan biosynthesis transpeptidase YP_359208.1 299740 D 246194 CDS YP_359209.1 78043204 3728568 301676..301807 1 NC_007503.1 hypothetical protein 301807 3728568 CHY_0346 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359209.1 301676 D 246194 CDS YP_359210.1 78045066 3728192 301794..302141 1 NC_007503.1 identified by similarity to SP:Q01463; match to protein family HMM PF03775; septum formation inhibitor MinC, C-terminal protein 302141 3728192 CHY_0347 Carboxydothermus hydrogenoformans Z-2901 septum formation inhibitor MinC, C-terminal protein YP_359210.1 301794 D 246194 CDS YP_359211.1 78043338 3728527 302155..302949 1 NC_007503.1 identified by similarity to SP:Q01464; match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD 302949 minD 3728527 minD Carboxydothermus hydrogenoformans Z-2901 septum site-determining protein MinD YP_359211.1 302155 D 246194 CDS YP_359212.1 78042681 3726970 302980..303246 1 NC_007503.1 identified by match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE 303246 minE 3726970 minE Carboxydothermus hydrogenoformans Z-2901 cell division topological specificity factor MinE YP_359212.1 302980 D 246194 CDS YP_359213.1 78043966 3726746 complement(303700..303801) 1 NC_007503.1 hypothetical protein 303801 3726746 CHY_0350 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359213.1 303700 R 246194 CDS YP_359214.1 78043425 3728790 303889..304101 1 NC_007503.1 identified by similarity to SP:P77304; hypothetical protein 304101 3728790 CHY_0351 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359214.1 303889 D 246194 CDS YP_359215.1 78043542 3726728 304136..304336 1 NC_007503.1 hypothetical protein 304336 3726728 CHY_0352 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359215.1 304136 D 246194 CDS YP_359216.1 78043774 3726807 304349..304516 1 NC_007503.1 hypothetical protein 304516 3726807 CHY_0353 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359216.1 304349 D 246194 CDS YP_359217.1 78042896 3727033 304535..305413 1 NC_007503.1 identified by similarity to GB:AAD05531.1; hypothetical protein 305413 3727033 CHY_0354 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359217.1 304535 D 246194 CDS YP_359218.1 78044779 3727903 305403..306095 1 NC_007503.1 identified by similarity to PIR:A70390; hypothetical protein 306095 3727903 CHY_0355 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359218.1 305403 D 246194 CDS YP_359219.1 78044692 3727814 306098..306211 1 NC_007503.1 hypothetical protein 306211 3727814 CHY_0356 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359219.1 306098 D 246194 CDS YP_359220.1 78044121 3727237 306231..306851 1 NC_007503.1 NapC/NirT family cyctochrome c 306851 3727237 CHY_0357 Carboxydothermus hydrogenoformans Z-2901 NapC/NirT family cyctochrome c YP_359220.1 306231 D 246194 CDS YP_359221.1 78043340 3728529 306934..308067 1 NC_007503.1 identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; FtsW/RodA/SpoVE family peptidoglycan biosynthesis protein 308067 3728529 CHY_0358 Carboxydothermus hydrogenoformans Z-2901 FtsW/RodA/SpoVE family peptidoglycan biosynthesis protein YP_359221.1 306934 D 246194 CDS YP_359222.1 78043247 3728630 308177..309112 1 NC_007503.1 identified by similarity to GB:AAP26001.1; match to protein family HMM PF00753; metallo-beta-lactamase 309112 3728630 CHY_0359 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_359222.1 308177 D 246194 CDS YP_359223.1 78044701 3727823 309176..309826 1 NC_007503.1 identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein 309826 3727823 CHY_0360 Carboxydothermus hydrogenoformans Z-2901 M23/M37 peptidase domain-containing protein YP_359223.1 309176 D 246194 CDS YP_359224.1 78044389 3727507 309827..310675 1 NC_007503.1 identified by similarity to SP:P26937; match to protein family HMM PF02163; membrane-associated zinc metalloprotease 310675 3727507 CHY_0361 Carboxydothermus hydrogenoformans Z-2901 membrane-associated zinc metalloprotease YP_359224.1 309827 D 246194 CDS YP_359225.1 78043713 3726666 310742..312607 1 NC_007503.1 identified by similarity to GB:AAM24165.1; match to protein family HMM PF04055; radical SAM domain-containing protein 312607 3726666 CHY_0362 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359225.1 310742 D 246194 CDS YP_359226.1 78042957 3726819 312591..313202 1 NC_007503.1 identified by similarity to GB:AAM24166.1; hypothetical protein 313202 3726819 CHY_0363 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359226.1 312591 D 246194 CDS YP_359227.1 78044652 3727774 313214..314392 1 NC_007503.1 identified by similarity to SP:P21513; similarity to SP:P25537; match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease 314392 3727774 CHY_0364 Carboxydothermus hydrogenoformans Z-2901 ribonuclease YP_359227.1 313214 D 246194 CDS YP_359228.1 78044148 3727264 314597..315652 1 NC_007503.1 identified by similarity to PIR:B69451; hypothetical protein 315652 3727264 CHY_0365 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359228.1 314597 D 246194 CDS YP_359229.1 78045050 3728176 complement(315733..315861) 1 NC_007503.1 hypothetical protein 315861 3728176 CHY_0366 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359229.1 315733 R 246194 CDS YP_359230.1 78043834 3728444 315852..316163 1 NC_007503.1 identified by similarity to SP:P26908; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 316163 rplU 3728444 rplU Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L21 YP_359230.1 315852 D 246194 CDS YP_359231.1 78044339 3727456 316182..316448 1 NC_007503.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 316448 rpmA 3727456 rpmA Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L27 YP_359231.1 316182 D 246194 CDS YP_359232.1 78043224 3728588 316509..316928 1 NC_007503.1 identified by similarity to GB:AAM24172.1; hypothetical protein 316928 3728588 CHY_0369 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359232.1 316509 D 246194 CDS YP_359233.1 78042851 3727105 316942..318231 1 NC_007503.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 318231 obgE 3727105 obgE Carboxydothermus hydrogenoformans Z-2901 GTPase ObgE YP_359233.1 316942 D 246194 CDS YP_359234.1 78043508 3726557 318288..318437 1 NC_007503.1 identified by similarity to GB:BAB52938.1; hypothetical protein 318437 3726557 CHY_0371 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359234.1 318288 D 246194 CDS YP_359235.1 78044754 3727878 318521..318904 1 NC_007503.1 identified by match to protein family HMM PF00989; sensory box protein 318904 3727878 CHY_0372 Carboxydothermus hydrogenoformans Z-2901 sensory box protein YP_359235.1 318521 D 246194 CDS YP_359236.1 78044409 3727527 complement(318938..320146) 1 NC_007503.1 identified by match to protein family HMM PF07690; transporter 320146 3727527 CHY_0373 Carboxydothermus hydrogenoformans Z-2901 transporter YP_359236.1 318938 R 246194 CDS YP_359237.1 78043447 3728910 320366..321268 1 NC_007503.1 identified by match to protein family HMM PF01226; formate/nitrite transporter family protein 321268 3728910 CHY_0374 Carboxydothermus hydrogenoformans Z-2901 formate/nitrite transporter family protein YP_359237.1 320366 D 246194 CDS YP_359238.1 78044429 3727547 321376..322230 1 NC_007503.1 identified by similarity to GB:CAC40782.1; match to protein family HMM PF01547; anion ABC transporter anion-binding protein 322230 3727547 CHY_0375 Carboxydothermus hydrogenoformans Z-2901 anion ABC transporter anion-binding protein YP_359238.1 321376 D 246194 CDS YP_359239.1 78044282 3727399 322240..322932 1 NC_007503.1 identified by similarity to GB:AAB84984.1; match to protein family HMM PF00528; anion ABC transporter permease 322932 3727399 CHY_0376 Carboxydothermus hydrogenoformans Z-2901 anion ABC transporter permease YP_359239.1 322240 D 246194 CDS YP_359240.1 78045037 3728162 322935..323624 1 NC_007503.1 identified by similarity to SP:P14788; match to protein family HMM PF00005; anion ABC transporter ATP-binding protein 323624 3728162 CHY_0377 Carboxydothermus hydrogenoformans Z-2901 anion ABC transporter ATP-binding protein YP_359240.1 322935 D 246194 CDS YP_359241.1 78043129 3728667 323630..323974 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM TIGR01199; molybdate transport repressor 323974 3728667 CHY_0378 Carboxydothermus hydrogenoformans Z-2901 molybdate transport repressor YP_359241.1 323630 D 246194 CDS YP_359242.1 78043770 3726803 324031..324492 1 NC_007503.1 identified by match to protein family HMM PF04073; ybaK/ebsC family protein 324492 3726803 CHY_0379 Carboxydothermus hydrogenoformans Z-2901 ybaK/ebsC family protein YP_359242.1 324031 D 246194 CDS YP_359243.1 78043896 3726519 324500..325618 1 NC_007503.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 325618 proB 3726519 proB Carboxydothermus hydrogenoformans Z-2901 gamma-glutamyl kinase YP_359243.1 324500 D 246194 CDS YP_359244.1 78044812 3727937 326302..327990 1 NC_007503.1 identified by match to protein family HMM TIGR01766; ISChy7, transposase 327990 3727937 CHY_0382 Carboxydothermus hydrogenoformans Z-2901 ISChy7, transposase YP_359244.1 326302 D 246194 CDS YP_359245.1 78042736 3726908 328296..329543 1 NC_007503.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 329543 proA 3726908 proA Carboxydothermus hydrogenoformans Z-2901 gamma-glutamyl phosphate reductase YP_359245.1 328296 D 246194 CDS YP_359246.1 78044322 3727439 329910..331145 1 NC_007503.1 identified by similarity to GB:BAB81029.1; match to protein family HMM PF00571; match to protein family HMM PF03448; MgtE intracellular domain-contain protein 331145 3727439 CHY_0384 Carboxydothermus hydrogenoformans Z-2901 MgtE intracellular domain-contain protein YP_359246.1 329910 D 246194 CDS YP_359247.1 78043910 3726533 331132..332382 1 NC_007503.1 identified by similarity to SP:P77145; match to protein family HMM PF01566; cation transporter 332382 3726533 CHY_0385 Carboxydothermus hydrogenoformans Z-2901 cation transporter YP_359247.1 331132 D 246194 CDS YP_359248.1 78043067 3726384 complement(332372..333409) 1 NC_007503.1 identified by similarity to GB:AAO91321.1; match to protein family HMM PF02636; hypothetical protein 333409 3726384 CHY_0386 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359248.1 332372 R 246194 CDS YP_359249.1 78044815 3727940 333545..333748 1 NC_007503.1 identified by similarity to GB:AAH21757.1; hypothetical protein 333748 3727940 CHY_0387 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359249.1 333545 D 246194 CDS YP_359250.1 78043476 3728803 333730..334335 1 NC_007503.1 identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 334335 nadD 3728803 nadD Carboxydothermus hydrogenoformans Z-2901 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_359250.1 333730 D 246194 CDS YP_359251.1 78043337 3728526 334403..334654 1 NC_007503.1 identified by similarity to SP:Q04836; match to protein family HMM PF00076; RNA-binding protein 334654 3728526 CHY_0389 Carboxydothermus hydrogenoformans Z-2901 RNA-binding protein YP_359251.1 334403 D 246194 CDS YP_359252.1 78045064 3728190 334700..335278 1 NC_007503.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488; HD domain-containing protein 335278 3728190 CHY_0390 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_359252.1 334700 D 246194 CDS YP_359253.1 78045095 3728221 335315..335677 1 NC_007503.1 identified by similarity to GB:AAM71388.1; match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap protein,-like protein 335677 3728221 CHY_0391 Carboxydothermus hydrogenoformans Z-2901 iojap protein,-like protein YP_359253.1 335315 D 246194 CDS YP_359254.1 78044545 3727664 336058..338523 1 NC_007503.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 338523 leuS 3727664 leuS Carboxydothermus hydrogenoformans Z-2901 leucyl-tRNA synthetase YP_359254.1 336058 D 246194 CDS YP_359255.1 78043177 3728696 338526..339167 1 NC_007503.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325; Crp/Fnr family transcriptional regulator 339167 3728696 CHY_0394 Carboxydothermus hydrogenoformans Z-2901 Crp/Fnr family transcriptional regulator YP_359255.1 338526 D 246194 CDS YP_359256.1 78044875 3728000 339248..339388 1 NC_007503.1 hypothetical protein 339388 3728000 CHY_0395 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359256.1 339248 D 246194 CDS YP_359257.1 78042807 3726863 339357..339515 1 NC_007503.1 hypothetical protein 339515 3726863 CHY_0396 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359257.1 339357 D 246194 CDS YP_359258.1 78044935 3728060 339528..340433 1 NC_007503.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 340433 3728060 CHY_0397 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter substrate-binding protein YP_359258.1 339528 D 246194 CDS YP_359259.1 78043778 3726634 340442..341407 1 NC_007503.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 341407 3726634 CHY_0398 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter permease YP_359259.1 340442 D 246194 CDS YP_359260.1 78043241 3728624 341400..342599 1 NC_007503.1 identified by similarity to SP:P23878; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 342599 3728624 CHY_0399 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter ATP-binding protein YP_359260.1 341400 D 246194 CDS YP_359261.1 78044257 3727374 342674..343183 1 NC_007503.1 identified by similarity to SP:Q58002; hypothetical protein 343183 3727374 CHY_0400 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359261.1 342674 D 246194 CDS YP_359262.1 78043306 3728611 343401..343829 1 NC_007503.1 identified by similarity to GB:AAO35192.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 343829 3728611 CHY_0401 Carboxydothermus hydrogenoformans Z-2901 rrf2 family protein YP_359262.1 343401 D 246194 CDS YP_359263.1 78044921 3728046 343833..344447 1 NC_007503.1 identified by similarity to SP:P39694; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein 344447 comEA 3728046 comEA Carboxydothermus hydrogenoformans Z-2901 competence protein YP_359263.1 343833 D 246194 CDS YP_359264.1 78044560 3727679 344456..346633 1 NC_007503.1 identified by similarity to SP:P39695; match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361; DNA internalization-related competence protein ComEC/Rec2 346633 3727679 CHY_0403 Carboxydothermus hydrogenoformans Z-2901 DNA internalization-related competence protein ComEC/Rec2 YP_359264.1 344456 D 246194 CDS YP_359265.1 78043916 3726344 346674..347252 1 NC_007503.1 identified by match to protein family HMM PF01464; transglycosylase 347252 3726344 CHY_0404 Carboxydothermus hydrogenoformans Z-2901 transglycosylase YP_359265.1 346674 D 246194 CDS YP_359266.1 78043172 3728691 347230..348213 1 NC_007503.1 identified by similarity to GB:AAO82164.1; match to protein family HMM PF06144; match to protein family HMM TIGR01128; hypothetical protein 348213 3728691 CHY_0405 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359266.1 347230 D 246194 CDS YP_359267.2 161594524 3727515 complement(348241..348513) 1 NC_007503.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 348513 rpsT 3727515 rpsT Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S20 YP_359267.2 348241 R 246194 CDS YP_359268.1 78042791 3726886 348660..348977 1 NC_007503.1 identified by similarity to GB:AAM24201.1; hypothetical protein 348977 3726886 CHY_0407 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359268.1 348660 D 246194 CDS YP_359269.1 78044841 3727966 349044..350027 1 NC_007503.1 identified by similarity to SP:P37968; sporulation protein 350027 3727966 CHY_0408 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_359269.1 349044 D 246194 CDS YP_359270.1 78044987 3728112 350127..351671 1 NC_007503.1 identified by similarity to GB:AAM23477.1; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 351671 mviN1 3728112 mviN1 Carboxydothermus hydrogenoformans Z-2901 integral membrane protein MviN YP_359270.1 350127 D 246194 CDS YP_359271.1 78044431 3727549 351684..353495 1 NC_007503.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 353495 lepA 3727549 lepA Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein LepA YP_359271.1 351684 D 246194 CDS YP_359272.1 78044379 3727497 353479..354609 1 NC_007503.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 354609 3727497 CHY_0411 Carboxydothermus hydrogenoformans Z-2901 oxygen-independent coproporphyrinogen III oxidase YP_359272.1 353479 D 246194 CDS YP_359273.1 78043787 3726644 354698..355723 1 NC_007503.1 identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA 355723 hrcA 3726644 hrcA Carboxydothermus hydrogenoformans Z-2901 heat-inducible transcription repressor HrcA YP_359273.1 354698 D 246194 CDS YP_359274.1 78043200 3728564 355739..357304 1 NC_007503.1 identified by similarity to SP:P48424; match to protein family HMM PF00118; thermosome subunit alpha 357304 3728564 CHY_0413 Carboxydothermus hydrogenoformans Z-2901 thermosome subunit alpha YP_359274.1 355739 D 246194 CDS YP_359275.1 78044836 3727961 357288..357872 1 NC_007503.1 identified by similarity to SP:P15874; match to protein family HMM PF01025; heat shock protein GrpE 357872 grpE 3727961 grpE Carboxydothermus hydrogenoformans Z-2901 heat shock protein GrpE YP_359275.1 357288 D 246194 CDS YP_359276.1 78045047 3728173 357892..359706 1 NC_007503.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 359706 dnaK 3728173 dnaK Carboxydothermus hydrogenoformans Z-2901 molecular chaperone DnaK YP_359276.1 357892 D 246194 CDS YP_359277.1 78044215 3727332 359732..360877 1 NC_007503.1 identified by similarity to SP:P08622; match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349; molecular chaperone DnaJ 360877 3727332 CHY_0416 Carboxydothermus hydrogenoformans Z-2901 molecular chaperone DnaJ YP_359277.1 359732 D 246194 CDS YP_359278.1 78044697 3727819 360904..361821 1 NC_007503.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475; match to protein family HMM PF03602; match to protein family HMM PF05175; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase 361821 prmA 3727819 prmA Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L11 methyltransferase YP_359278.1 360904 D 246194 CDS YP_359279.1 78044093 3727209 361829..362575 1 NC_007503.1 identified by match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 362575 3727209 CHY_0418 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359279.1 361829 D 246194 CDS YP_359280.1 78044693 3727815 362572..363876 1 NC_007503.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; MiaB-like tRNA modifying enzyme 363876 3727815 CHY_0419 Carboxydothermus hydrogenoformans Z-2901 MiaB-like tRNA modifying enzyme YP_359280.1 362572 D 246194 CDS YP_359281.1 78043245 3728628 363973..364314 1 NC_007503.1 identified by similarity to GB:AAM24219.1; match to protein family HMM PF01230; HIT domain-containing protein 364314 3728628 CHY_0420 Carboxydothermus hydrogenoformans Z-2901 HIT domain-containing protein YP_359281.1 363973 D 246194 CDS YP_359282.1 78043650 3728452 364356..364535 1 NC_007503.1 identified by similarity to SP:P21478; match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 364535 rpsU 3728452 rpsU Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S21 YP_359282.1 364356 D 246194 CDS YP_359283.1 78044424 3727542 364545..364991 1 NC_007503.1 identified by match to protein family HMM PF02637; GatB/Yqey family protein 364991 3727542 CHY_0422 Carboxydothermus hydrogenoformans Z-2901 GatB/Yqey family protein YP_359283.1 364545 D 246194 CDS YP_359284.1 78045194 3728320 365041..365292 1 NC_007503.1 identified by similarity to GB:BAB81727.1; hypothetical protein 365292 3728320 CHY_0423 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359284.1 365041 D 246194 CDS YP_359285.1 78044172 3727288 365298..366440 1 NC_007503.1 identified by similarity to SP:P41028; match to protein family HMM PF06898; sporulation protein 366440 3727288 CHY_0424 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_359285.1 365298 D 246194 CDS YP_359286.1 78044880 3728005 366443..367420 1 NC_007503.1 identified by match to protein family HMM PF00013; match to protein family HMM PF02562; phoH-like protein 367420 3728005 CHY_0425 Carboxydothermus hydrogenoformans Z-2901 phoH-like protein YP_359286.1 366443 D 246194 CDS YP_359287.1 78043665 3726696 367440..369530 1 NC_007503.1 identified by similarity to GB:AAM24226.1; match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277; HDIG domain-containing protein 369530 3726696 CHY_0426 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359287.1 367440 D 246194 CDS YP_359288.1 78043035 3726450 369527..369958 1 NC_007503.1 identified by similarity to SP:Q8RB52; match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 369958 3726450 CHY_0427 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359288.1 369527 D 246194 CDS YP_359289.1 78045026 3728151 369960..370442 1 NC_007503.1 identified by similarity to SP:P19638; match to protein family HMM PF01219; diacylglycerol kinase 370442 dgkA 3728151 dgkA Carboxydothermus hydrogenoformans Z-2901 diacylglycerol kinase YP_359289.1 369960 D 246194 CDS YP_359290.1 78044559 3727678 370408..371043 1 NC_007503.1 identified by similarity to GB:CAE30615.1; match to protein family HMM PF04367; hypothetical protein 371043 3727678 CHY_0429 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359290.1 370408 D 246194 CDS YP_359291.1 78045135 3728261 371033..371929 1 NC_007503.1 identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era 371929 era 3728261 era Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein Era YP_359291.1 371033 D 246194 CDS YP_359292.1 78044577 3727697 372256..374001 1 NC_007503.1 identified by similarity to SP:P33231; similarity to SP:Q46839; match to protein family HMM PF02652; match to protein family HMM TIGR00795; L-lactate/glycolate permease 374001 3727697 CHY_0431 Carboxydothermus hydrogenoformans Z-2901 L-lactate/glycolate permease YP_359292.1 372256 D 246194 CDS YP_359293.1 78043260 3728546 374047..375432 1 NC_007503.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 375432 3728546 CHY_0432 Carboxydothermus hydrogenoformans Z-2901 glycolate oxidase subunit GlcD YP_359293.1 374047 D 246194 CDS YP_359294.1 78042735 3726946 375445..376689 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit 376689 3726946 CHY_0433 Carboxydothermus hydrogenoformans Z-2901 glycolate oxidase, iron-sulfur subunit YP_359294.1 375445 D 246194 CDS YP_359295.1 78044814 3727939 376765..377460 1 NC_007503.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 377460 3727939 CHY_0434 Carboxydothermus hydrogenoformans Z-2901 GntR family transcriptional regulator YP_359295.1 376765 D 246194 CDS YP_359296.1 78044955 3728080 377549..378076 1 NC_007503.1 identified by similarity to OMNI:NTL01BH1837; match to protein family HMM PF02589; hypothetical protein 378076 3728080 CHY_0435 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359296.1 377549 D 246194 CDS YP_359297.1 78044095 3727211 378076..380196 1 NC_007503.1 identified by similarity to SP:P77536; match to protein family HMM PF02754; iron-sulfur cluster binding protein 380196 3727211 CHY_0436 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur cluster binding protein YP_359297.1 378076 D 246194 CDS YP_359298.1 78043399 3728861 complement(380233..381903) 1 NC_007503.1 identified by similarity to SP:P29212; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 381903 fadD1 3728861 fadD1 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_359298.1 380233 R 246194 CDS YP_359299.1 78044245 3727362 382062..382784 1 NC_007503.1 identified by similarity to SP:P15027; match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 382784 3727362 CHY_0438 Carboxydothermus hydrogenoformans Z-2901 DNA repair protein RecO YP_359299.1 382062 D 246194 CDS YP_359300.1 78045220 3728346 383147..384019 1 NC_007503.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 384019 glyQ 3728346 glyQ Carboxydothermus hydrogenoformans Z-2901 glycyl-tRNA synthetase subunit alpha YP_359300.1 383147 D 246194 CDS YP_359301.1 78042751 3726923 384037..386109 1 NC_007503.1 identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 386109 glyS 3726923 glyS Carboxydothermus hydrogenoformans Z-2901 glycyl-tRNA synthetase subunit beta YP_359301.1 384037 D 246194 CDS YP_359302.1 78043601 3728754 386213..386854 1 NC_007503.1 identified by similarity to GB:AAM24234.1; match to protein family HMM PF00571; hypothetical protein 386854 3728754 CHY_0441 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359302.1 386213 D 246194 CDS YP_359303.1 78044534 3727653 386864..387697 1 NC_007503.1 identified by similarity to SP:Q9KD46; match to protein family HMM PF03618; hypothetical protein 387697 3727653 CHY_0442 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359303.1 386864 D 246194 CDS YP_359304.1 78044221 3727338 387697..390354 1 NC_007503.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 390354 ppdK 3727338 ppdK Carboxydothermus hydrogenoformans Z-2901 pyruvate phosphate dikinase YP_359304.1 387697 D 246194 CDS YP_359305.1 78044821 3727946 complement(390405..391583) 1 NC_007503.1 hypothetical protein 391583 3727946 CHY_0444 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359305.1 390405 R 246194 CDS YP_359306.1 78043254 3728637 391919..392905 1 NC_007503.1 identified by similarity to GB:AAM23723.1; hypothetical protein 392905 3728637 CHY_0445 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359306.1 391919 D 246194 CDS YP_359307.1 78045146 3728272 392914..393285 1 NC_007503.1 identified by match to protein family HMM PF00392; GntR family transcriptional regulator 393285 3728272 CHY_0446 Carboxydothermus hydrogenoformans Z-2901 GntR family transcriptional regulator YP_359307.1 392914 D 246194 CDS YP_359308.1 78044547 3727666 393263..393853 1 NC_007503.1 hypothetical protein 393853 3727666 CHY_0447 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359308.1 393263 D 246194 CDS YP_359309.1 78043273 3728559 393854..394684 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 394684 3728559 CHY_0448 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_359309.1 393854 D 246194 CDS YP_359310.1 78042695 3726984 complement(394860..394976) 1 NC_007503.1 hypothetical protein 394976 3726984 CHY_0449 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359310.1 394860 R 246194 CDS YP_359311.1 78044782 3727906 395104..395199 1 NC_007503.1 hypothetical protein 395199 3727906 CHY_0450 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359311.1 395104 D 246194 CDS YP_359312.1 78044190 3727306 395202..395735 1 NC_007503.1 identified by similarity to SP:P37025; match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 395735 3727306 CHY_0451 Carboxydothermus hydrogenoformans Z-2901 2'-5' RNA ligase YP_359312.1 395202 D 246194 CDS YP_359313.1 78042953 3726815 395814..396431 1 NC_007503.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; FMN reductase, NADPH-dependent 396431 3726815 CHY_0452 Carboxydothermus hydrogenoformans Z-2901 FMN reductase, NADPH-dependent YP_359313.1 395814 D 246194 CDS YP_359314.1 78045165 3728291 396446..397444 1 NC_007503.1 dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 397444 3728291 CHY_0453 Carboxydothermus hydrogenoformans Z-2901 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_359314.1 396446 D 246194 CDS YP_359315.1 78044503 3727622 397519..399246 1 NC_007503.1 identified by similarity to SP:Q08346; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM TIGR01391; DNA primase 399246 dnaG 3727622 dnaG Carboxydothermus hydrogenoformans Z-2901 DNA primase YP_359315.1 397519 D 246194 CDS YP_359316.1 78044024 3727139 399269..400381 1 NC_007503.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 400381 rpoD 3727139 rpoD Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma factor RpoD YP_359316.1 399269 D 246194 CDS YP_359317.1 78043325 3728650 400865..401563 1 NC_007503.1 identified by similarity to PIR:F97060; match to protein family HMM PF04816; hypothetical protein 401563 3728650 CHY_0459 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359317.1 400865 D 246194 CDS YP_359318.1 78043187 3728706 401542..402648 1 NC_007503.1 identified by similarity to GB:AAP28222.1; match to protein family HMM PF01784; match to protein family HMM TIGR00486; hypothetical protein 402648 3728706 CHY_0460 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359318.1 401542 D 246194 CDS YP_359319.1 78043174 3728693 402683..403366 1 NC_007503.1 identified by similarity to PIR:F70405; match to protein family HMM PF02591; hypothetical protein 403366 3728693 CHY_0461 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359319.1 402683 D 246194 CDS YP_359320.1 78043967 3726747 complement(403513..403635) 1 NC_007503.1 hypothetical protein 403635 3726747 CHY_0462 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359320.1 403513 R 246194 CDS YP_359321.1 78043363 3728884 complement(403820..404176) 1 NC_007503.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown; hypothetical protein 404176 3728884 CHY_0463 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359321.1 403820 R 246194 CDS YP_359322.1 78042925 3727024 complement(404160..404267) 1 NC_007503.1 hypothetical protein 404267 3727024 CHY_0464 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359322.1 404160 R 246194 CDS YP_359323.1 78042884 3727060 complement(404420..404743) 1 NC_007503.1 identified by similarity to SP:Q8A295; match to protein family HMM PF01906; hypothetical protein 404743 3727060 CHY_0465 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359323.1 404420 R 246194 CDS YP_359324.1 78042919 3727018 complement(404902..405030) 1 NC_007503.1 hypothetical protein 405030 3727018 CHY_0466 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359324.1 404902 R 246194 CDS YP_359325.1 78044414 3727532 405115..405321 1 NC_007503.1 hypothetical protein 405321 3727532 CHY_0467 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359325.1 405115 D 246194 CDS YP_359326.1 78044217 3727334 405231..405338 1 NC_007503.1 hypothetical protein 405338 3727334 CHY_0468 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359326.1 405231 D 246194 CDS YP_359327.1 78043353 3728874 405366..406238 1 NC_007503.1 identified by match to protein family HMM PF00892; hypothetical protein 406238 3728874 CHY_0469 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359327.1 405366 D 246194 CDS YP_359328.1 78043615 3728826 406248..406613 1 NC_007503.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 406613 mgsA 3728826 mgsA Carboxydothermus hydrogenoformans Z-2901 methylglyoxal synthase YP_359328.1 406248 D 246194 CDS YP_359329.1 78044151 3727267 406627..407439 1 NC_007503.1 identified by similarity to SP:P58009; hypothetical protein 407439 3727267 CHY_0471 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359329.1 406627 D 246194 CDS YP_359330.1 78043088 3726366 407602..408117 1 NC_007503.1 hypothetical protein 408117 3726366 CHY_0472 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359330.1 407602 D 246194 CDS YP_359331.1 78043143 3728506 complement(408119..408484) 1 NC_007503.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase 408484 aroH1 3728506 aroH1 Carboxydothermus hydrogenoformans Z-2901 chorismate mutase YP_359331.1 408119 R 246194 CDS YP_359332.1 78043672 3726703 complement(408489..409571) 1 NC_007503.1 identified by similarity to SP:P20692; match to protein family HMM PF01842; match to protein family HMM PF02153; match to protein family HMM PF02737; match to protein family HMM PF03446; match to protein family HMM PF03807; prephenate dehydrogenase 409571 tyrA 3726703 tyrA Carboxydothermus hydrogenoformans Z-2901 prephenate dehydrogenase YP_359332.1 408489 R 246194 CDS YP_359333.1 78043797 3726615 complement(409571..410581) 1 NC_007503.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361; phospho-2-dehydro-3-deoxyheptonate aldolase 410581 aroF1 3726615 aroF1 Carboxydothermus hydrogenoformans Z-2901 phospho-2-dehydro-3-deoxyheptonate aldolase YP_359333.1 409571 R 246194 CDS YP_359334.1 78044357 3727475 411012..413687 1 NC_007503.1 identified by match to protein family HMM PF00384; match to protein family HMM PF04879; molybdopterin oxidoreductase, molybdopterin-binding subunit 413687 3727475 CHY_0476 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, molybdopterin-binding subunit YP_359334.1 411012 D 246194 CDS YP_359335.1 78044751 3727875 413699..414295 1 NC_007503.1 identified by match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit 414295 3727875 CHY_0477 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit YP_359335.1 413699 D 246194 CDS YP_359336.1 78042668 3728494 414309..415184 1 NC_007503.1 identified by similarity to OMNI:CT0494; match to protein family HMM PF03916; molybdopterin oxidoreductase membrane subunit 415184 3728494 CHY_0478 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase membrane subunit YP_359336.1 414309 D 246194 CDS YP_359337.1 78044716 3727838 415255..415437 1 NC_007503.1 hypothetical protein 415437 3727838 CHY_0479 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359337.1 415255 D 246194 CDS YP_359338.1 78042847 3727101 415512..416573 1 NC_007503.1 identified by similarity to SP:P36562; match to protein family HMM PF02277; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 416573 cobT 3727101 cobT Carboxydothermus hydrogenoformans Z-2901 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_359338.1 415512 D 246194 CDS YP_359339.1 78044141 3727257 complement(416620..418005) 1 NC_007503.1 identified by similarity to SP:P32397; match to protein family HMM PF01593; match to protein family HMM TIGR00562; protoporphyrinogen oxidase 418005 hemG 3727257 hemG Carboxydothermus hydrogenoformans Z-2901 protoporphyrinogen oxidase YP_359339.1 416620 R 246194 CDS YP_359340.1 78043725 3728470 complement(418008..418886) 1 NC_007503.1 identified by similarity to SP:P32396; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 418886 hemH 3728470 hemH Carboxydothermus hydrogenoformans Z-2901 ferrochelatase YP_359340.1 418008 R 246194 CDS YP_359341.1 78043006 3726459 complement(418890..419942) 1 NC_007503.1 identified by similarity to SP:P29680; match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase 419942 hemE 3726459 hemE Carboxydothermus hydrogenoformans Z-2901 uroporphyrinogen decarboxylase YP_359341.1 418890 R 246194 CDS YP_359342.1 78045217 3728343 420120..421382 1 NC_007503.1 identified by match to protein family HMM PF05034; match to protein family HMM PF07476; match to protein family HMM TIGR01502; methylaspartate ammonia-lyase 421382 3728343 CHY_0484 Carboxydothermus hydrogenoformans Z-2901 methylaspartate ammonia-lyase YP_359342.1 420120 D 246194 CDS YP_359343.1 78044819 3727944 421375..421476 1 NC_007503.1 hypothetical protein 421476 3727944 CHY_0485 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359343.1 421375 D 246194 CDS YP_359344.1 78042674 3728500 complement(421429..421617) 1 NC_007503.1 hypothetical protein 421617 3728500 CHY_0486 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359344.1 421429 R 246194 CDS YP_359345.1 78043870 3726689 421610..422875 1 NC_007503.1 identified by similarity to SP:P11570; match to protein family HMM PF06050; dehydratase 422875 3726689 CHY_0487 Carboxydothermus hydrogenoformans Z-2901 dehydratase YP_359345.1 421610 D 246194 CDS YP_359346.1 78044862 3727987 422875..423612 1 NC_007503.1 identified by similarity to OMNI:NTL01FN0792; match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 423612 3727987 CHY_0488 Carboxydothermus hydrogenoformans Z-2901 CoA-substrate-specific enzyme activase YP_359346.1 422875 D 246194 CDS YP_359347.1 78042904 3727042 423982..425064 1 NC_007503.1 identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528; glycine cleavage system T protein 425064 gcvT 3727042 gcvT Carboxydothermus hydrogenoformans Z-2901 glycine cleavage system T protein YP_359347.1 423982 D 246194 CDS YP_359348.1 78044435 3727553 425067..425459 1 NC_007503.1 identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 425459 gcvH 3727553 gcvH Carboxydothermus hydrogenoformans Z-2901 glycine cleavage system H protein YP_359348.1 425067 D 246194 CDS YP_359349.1 78044154 3727270 425461..426795 1 NC_007503.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 426795 gcvPA 3727270 gcvPA Carboxydothermus hydrogenoformans Z-2901 glycine dehydrogenase subunit 1 YP_359349.1 425461 D 246194 CDS YP_359350.1 78044158 3727274 426795..428255 1 NC_007503.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 428255 gcvPB 3727274 gcvPB Carboxydothermus hydrogenoformans Z-2901 glycine dehydrogenase subunit 2 YP_359350.1 426795 D 246194 CDS YP_359351.1 78044055 3727170 428243..429046 1 NC_007503.1 identified by similarity to GB:AAL81282.1; match to protein family HMM PF04055; radical SAM domain-containing protein 429046 3727170 CHY_0493 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359351.1 428243 D 246194 CDS YP_359352.1 78044603 3727724 429043..429993 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 429993 3727724 CHY_0494 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359352.1 429043 D 246194 CDS YP_359353.1 78042941 3727001 429995..430804 1 NC_007503.1 identified by match to protein family HMM PF03099; biotin/lipoate A/B protein ligase 430804 3727001 CHY_0495 Carboxydothermus hydrogenoformans Z-2901 biotin/lipoate A/B protein ligase YP_359353.1 429995 D 246194 CDS YP_359354.1 78045021 3728146 complement(430831..431007) 1 NC_007503.1 identified by similarity to GB:AAM24100.1; hypothetical protein 431007 3728146 CHY_0496 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359354.1 430831 R 246194 CDS YP_359355.1 78043481 3728808 431118..431354 1 NC_007503.1 identified by similarity to GB:AAM72910.1; hypothetical protein 431354 3728808 CHY_0497 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359355.1 431118 D 246194 CDS YP_359356.1 78044876 3728001 complement(431457..432668) 1 NC_007503.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04282; sensory box protein 432668 3728001 CHY_0498 Carboxydothermus hydrogenoformans Z-2901 sensory box protein YP_359356.1 431457 R 246194 CDS YP_359357.1 78042976 3726545 432784..434151 1 NC_007503.1 identified by similarity to GP:2323346; cytochrome c 434151 3726545 CHY_0499 Carboxydothermus hydrogenoformans Z-2901 cytochrome c YP_359357.1 432784 D 246194 CDS YP_359358.1 78043758 3726284 434277..434669 1 NC_007503.1 identified by similarity to GB:BAB67557.1; match to protein family HMM PF01980; match to protein family HMM TIGR00104; hypothetical protein 434669 3726284 CHY_0500 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359358.1 434277 D 246194 CDS YP_359359.1 78044502 3727621 434670..435215 1 NC_007503.1 identified by similarity to PIR:G97323; match to protein family HMM PF00657; GDSL family lipase/acylhydrolase 435215 3727621 CHY_0501 Carboxydothermus hydrogenoformans Z-2901 GDSL family lipase/acylhydrolase YP_359359.1 434670 D 246194 CDS YP_359360.1 78044334 3727451 435343..436254 1 NC_007503.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 436254 3727451 CHY_0502 Carboxydothermus hydrogenoformans Z-2901 cation efflux family protein YP_359360.1 435343 D 246194 CDS YP_359361.1 78044848 3727973 complement(436259..437155) 1 NC_007503.1 identified by match to protein family HMM PF00892; hypothetical protein 437155 3727973 CHY_0503 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359361.1 436259 R 246194 CDS YP_359362.1 78043559 3726785 437331..438149 1 NC_007503.1 identified by similarity to SP:P10344; match to protein family HMM PF00497; glutamine ABC transporter glutamine-binding protein 438149 3726785 CHY_0504 Carboxydothermus hydrogenoformans Z-2901 glutamine ABC transporter glutamine-binding protein YP_359362.1 437331 D 246194 CDS YP_359363.1 78044176 3727292 438164..438850 1 NC_007503.1 identified by similarity to SP:P10345; match to protein family HMM PF00528; match to protein family HMM TIGR01726; glutamine ABC transporter permease 438850 3727292 CHY_0505 Carboxydothermus hydrogenoformans Z-2901 glutamine ABC transporter permease YP_359363.1 438164 D 246194 CDS YP_359364.1 78044744 3727867 438837..439565 1 NC_007503.1 identified by similarity to SP:P27675; match to protein family HMM PF00005; glutamine ABC transporter ATP-binding protein 439565 glnQ 3727867 glnQ Carboxydothermus hydrogenoformans Z-2901 glutamine ABC transporter ATP-binding protein YP_359364.1 438837 D 246194 CDS YP_359365.1 78042699 3726949 439658..440188 1 NC_007503.1 identified by similarity to PIR:E97074; match to protein family HMM PF00583; acetyltransferase 440188 3726949 CHY_0507 Carboxydothermus hydrogenoformans Z-2901 acetyltransferase YP_359365.1 439658 D 246194 CDS YP_359366.1 78044514 3727633 440203..440622 1 NC_007503.1 hypothetical protein 440622 3727633 CHY_0508 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359366.1 440203 D 246194 CDS YP_359367.1 78043181 3728700 440696..441091 1 NC_007503.1 identified by similarity to OMNI:NTL03CP2236; hypothetical protein 441091 3728700 CHY_0509 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359367.1 440696 D 246194 CDS YP_359368.1 78044958 3728083 441246..441917 1 NC_007503.1 identified by similarity to SP:P16676; match to protein family HMM PF00005; anion ABC transporter ATP-binding protein 441917 3728083 CHY_0510 Carboxydothermus hydrogenoformans Z-2901 anion ABC transporter ATP-binding protein YP_359368.1 441246 D 246194 CDS YP_359369.1 78044348 3727465 441871..444411 1 NC_007503.1 phage infection protein 444411 3727465 CHY_0511 Carboxydothermus hydrogenoformans Z-2901 phage infection protein YP_359369.1 441871 D 246194 CDS YP_359370.1 78043066 3726383 444428..444994 1 NC_007503.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 444994 3726383 CHY_0512 Carboxydothermus hydrogenoformans Z-2901 TetR family transcriptional regulator YP_359370.1 444428 D 246194 CDS YP_359371.1 78043608 3728819 445057..445266 1 NC_007503.1 hypothetical protein 445266 3728819 CHY_0513 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359371.1 445057 D 246194 CDS YP_359372.1 78042636 3727122 445142..445246 1 NC_007503.1 hypothetical protein 445246 3727122 CHY_0514 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359372.1 445142 D 246194 CDS YP_359373.1 78043021 3726475 445425..446306 1 NC_007503.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 446306 ilvE 3726475 ilvE Carboxydothermus hydrogenoformans Z-2901 branched-chain amino acid aminotransferase YP_359373.1 445425 D 246194 CDS YP_359374.1 78045160 3728286 446319..447980 1 NC_007503.1 identified by match to protein family HMM PF00920; match to protein family HMM TIGR00110; dihydroxy-acid dehydratase 447980 ilvD 3728286 ilvD Carboxydothermus hydrogenoformans Z-2901 dihydroxy-acid dehydratase YP_359374.1 446319 D 246194 CDS YP_359375.1 78044561 3727680 447992..449650 1 NC_007503.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 449650 ilvB1 3727680 ilvB1 Carboxydothermus hydrogenoformans Z-2901 acetolactate synthase large subunit YP_359375.1 447992 D 246194 CDS YP_359376.1 78043291 3728734 449663..450175 1 NC_007503.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 450175 ilvH 3728734 ilvH Carboxydothermus hydrogenoformans Z-2901 acetolactate synthase 3 regulatory subunit YP_359376.1 449663 D 246194 CDS YP_359377.1 78042750 3726922 450178..451170 1 NC_007503.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 451170 ilvC 3726922 ilvC Carboxydothermus hydrogenoformans Z-2901 ketol-acid reductoisomerase YP_359377.1 450178 D 246194 CDS YP_359378.1 78043014 3726467 451183..452847 1 NC_007503.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 452847 ilvB2 3726467 ilvB2 Carboxydothermus hydrogenoformans Z-2901 acetolactate synthase large subunit YP_359378.1 451183 D 246194 CDS YP_359379.1 78044251 3727368 452918..454447 1 NC_007503.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 454447 leuA 3727368 leuA Carboxydothermus hydrogenoformans Z-2901 2-isopropylmalate synthase YP_359379.1 452918 D 246194 CDS YP_359380.1 78043190 3728709 454447..455712 1 NC_007503.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 455712 leuC 3728709 leuC Carboxydothermus hydrogenoformans Z-2901 3-isopropylmalate dehydratase large subunit YP_359380.1 454447 D 246194 CDS YP_359381.1 78043773 3726806 455713..456201 1 NC_007503.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02084; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase small subunit 456201 leuD 3726806 leuD Carboxydothermus hydrogenoformans Z-2901 3-isopropylmalate dehydratase small subunit YP_359381.1 455713 D 246194 CDS YP_359382.1 78044738 3727861 456170..457294 1 NC_007503.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 457294 leuB 3727861 leuB Carboxydothermus hydrogenoformans Z-2901 3-isopropylmalate dehydrogenase YP_359382.1 456170 D 246194 CDS YP_359383.1 78042646 3726310 457275..458846 1 NC_007503.1 catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase transferase 458846 3726310 CHY_0525 Carboxydothermus hydrogenoformans Z-2901 alpha-isopropylmalate/homocitrate synthase transferase YP_359383.1 457275 D 246194 CDS YP_359384.1 78042933 3726993 complement(458843..459394) 1 NC_007503.1 hypothetical protein 459394 3726993 CHY_0526 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359384.1 458843 R 246194 CDS YP_359385.1 78043501 3726608 complement(459366..459554) 1 NC_007503.1 hypothetical protein 459554 3726608 CHY_0527 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359385.1 459366 R 246194 CDS YP_359386.1 78044012 3727127 complement(459699..460124) 1 NC_007503.1 hypothetical protein 460124 3727127 CHY_0528 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359386.1 459699 R 246194 CDS YP_359387.1 78044037 3727152 complement(460146..461198) 1 NC_007503.1 identified by similarity to SP:Q58121; hypothetical protein 461198 3727152 CHY_0529 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359387.1 460146 R 246194 CDS YP_359388.1 78044895 3728020 complement(461294..462019) 1 NC_007503.1 identified by similarity to PIR:G72200; match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 462019 3728020 CHY_0530 Carboxydothermus hydrogenoformans Z-2901 phosphoesterase YP_359388.1 461294 R 246194 CDS YP_359389.1 78042644 3726308 462160..462441 1 NC_007503.1 hypothetical protein 462441 3726308 CHY_0531 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359389.1 462160 D 246194 CDS YP_359390.1 78043561 3726787 complement(462438..462560) 1 NC_007503.1 hypothetical protein 462560 3726787 CHY_0532 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359390.1 462438 R 246194 CDS YP_359391.1 78042811 3726867 462505..462633 1 NC_007503.1 hypothetical protein 462633 3726867 CHY_0533 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359391.1 462505 D 246194 CDS YP_359392.1 78043727 3728472 462751..465528 1 NC_007503.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 465528 ileS 3728472 ileS Carboxydothermus hydrogenoformans Z-2901 isoleucyl-tRNA synthetase YP_359392.1 462751 D 246194 CDS YP_359393.1 78043237 3728620 465613..465786 1 NC_007503.1 identified by similarity to PIR:A83808; hypothetical protein 465786 3728620 CHY_0535 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359393.1 465613 D 246194 CDS YP_359394.1 78045173 3728299 465810..465977 1 NC_007503.1 hypothetical protein 465977 3728299 CHY_0536 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359394.1 465810 D 246194 CDS YP_359395.1 78043486 3728813 465986..467041 1 NC_007503.1 identified by match to protein family HMM PF01594; hypothetical protein 467041 3728813 CHY_0537 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359395.1 465986 D 246194 CDS YP_359396.1 78044932 3728057 467080..469704 1 NC_007503.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 469704 alaS 3728057 alaS Carboxydothermus hydrogenoformans Z-2901 alanyl-tRNA synthetase YP_359396.1 467080 D 246194 CDS YP_359397.1 78044769 3727893 469764..469943 1 NC_007503.1 hypothetical protein 469943 3727893 CHY_0539 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359397.1 469764 D 246194 CDS YP_359398.1 78044658 3727780 470031..470288 1 NC_007503.1 identified by similarity to GB:AAM24473.1; match to protein family HMM PF06135; hypothetical protein 470288 3727780 CHY_0540 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359398.1 470031 D 246194 CDS YP_359399.1 78042764 3726897 470292..471245 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase 471245 3726897 CHY_0541 Carboxydothermus hydrogenoformans Z-2901 aldo/keto reductase YP_359399.1 470292 D 246194 CDS YP_359400.1 78044200 3727317 471262..471678 1 NC_007503.1 identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 471678 3727317 CHY_0542 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359400.1 471262 D 246194 CDS YP_359401.1 78044493 3727612 471694..471975 1 NC_007503.1 identified by similarity to GB:AAM24475.1; match to protein family HMM PF06949; hypothetical protein 471975 3727612 CHY_0543 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359401.1 471694 D 246194 CDS YP_359402.1 78042966 3726828 472079..473476 1 NC_007503.1 identified by similarity to SP:Q47747; match to protein family HMM PF04294; match to protein family HMM PF07501; von Willebrand factor A 473476 3726828 CHY_0544 Carboxydothermus hydrogenoformans Z-2901 von Willebrand factor A YP_359402.1 472079 D 246194 CDS YP_359403.1 78043738 3728483 473497..474480 1 NC_007503.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 474480 galE 3728483 galE Carboxydothermus hydrogenoformans Z-2901 UDP-glucose 4-epimerase YP_359403.1 473497 D 246194 CDS YP_359404.1 78043430 3728795 474481..476019 1 NC_007503.1 identified by similarity to GB:AAM23477.1; match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 476019 mviN2 3728795 mviN2 Carboxydothermus hydrogenoformans Z-2901 integral membrane protein MviN YP_359404.1 474481 D 246194 CDS YP_359405.1 78043384 3728769 476192..477205 1 NC_007503.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein 477205 3728769 CHY_0547 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359405.1 476192 D 246194 CDS YP_359406.1 78042678 3726967 477217..478428 1 NC_007503.1 identified by similarity to GB:AAO35646.1; match to protein family HMM PF01136; U32 family peptidase 478428 3726967 CHY_0548 Carboxydothermus hydrogenoformans Z-2901 U32 family peptidase YP_359406.1 477217 D 246194 CDS YP_359407.1 78043140 3728678 478421..478636 1 NC_007503.1 hypothetical protein 478636 3728678 CHY_0549 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359407.1 478421 D 246194 CDS YP_359408.1 78044374 3727492 478753..479526 1 NC_007503.1 identified by match to protein family HMM PF00165; match to protein family HMM PF01381; AraC family transcriptional regulator 479526 3727492 CHY_0550 Carboxydothermus hydrogenoformans Z-2901 AraC family transcriptional regulator YP_359408.1 478753 D 246194 CDS YP_359409.1 78042690 3726979 479599..479805 1 NC_007503.1 identified by similarity to PIR:H72284; match to protein family HMM TIGR02605; hypothetical protein 479805 3726979 CHY_0551 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359409.1 479599 D 246194 CDS YP_359410.1 78043614 3728825 479998..480576 1 NC_007503.1 identified by similarity to PIR:F70426; hypothetical protein 480576 3728825 CHY_0552 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359410.1 479998 D 246194 CDS YP_359411.1 78042898 3727036 480592..480915 1 NC_007503.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 480915 trx1 3727036 trx1 Carboxydothermus hydrogenoformans Z-2901 thioredoxin YP_359411.1 480592 D 246194 CDS YP_359412.1 78044881 3728006 480952..481143 1 NC_007503.1 identified by similarity to SP:P00198; match to protein family HMM PF00037; ferredoxin 481143 3728006 CHY_0554 Carboxydothermus hydrogenoformans Z-2901 ferredoxin YP_359412.1 480952 D 246194 CDS YP_359413.1 78044795 3727920 481153..481767 1 NC_007503.1 identified by similarity to SP:P49016; match to protein family HMM PF01170; match to protein family HMM PF01209; UbiE/COQ5 family methlytransferase 481767 3727920 CHY_0555 Carboxydothermus hydrogenoformans Z-2901 UbiE/COQ5 family methlytransferase YP_359413.1 481153 D 246194 CDS YP_359414.1 78043460 3728844 481904..483262 1 NC_007503.1 identified by similarity to SP:P25550; match to protein family HMM PF04055; radical SAM domain-containing protein 483262 3728844 CHY_0556 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359414.1 481904 D 246194 CDS YP_359415.1 78042779 3726873 483265..483957 1 NC_007503.1 hypothetical protein 483957 3726873 CHY_0557 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359415.1 483265 D 246194 CDS YP_359416.1 78044670 3727792 483921..484013 1 NC_007503.1 hypothetical protein 484013 3727792 CHY_0558 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359416.1 483921 D 246194 CDS YP_359417.1 78043808 3726626 484010..484153 1 NC_007503.1 hypothetical protein 484153 3726626 CHY_0559 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359417.1 484010 D 246194 CDS YP_359418.1 78043252 3728635 484181..485461 1 NC_007503.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00085; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin 485461 3728635 CHY_0560 Carboxydothermus hydrogenoformans Z-2901 thioredoxin YP_359418.1 484181 D 246194 CDS YP_359419.1 78043765 3726798 485599..485691 1 NC_007503.1 hypothetical protein 485691 3726798 CHY_0561 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359419.1 485599 D 246194 CDS YP_359420.1 78043189 3728708 485707..485886 1 NC_007503.1 hypothetical protein 485886 3728708 CHY_0562 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359420.1 485707 D 246194 CDS YP_359421.1 78044994 3728119 485909..486370 1 NC_007503.1 cytochrome c biogenesis protein 486370 3728119 CHY_0563 Carboxydothermus hydrogenoformans Z-2901 cytochrome c biogenesis protein YP_359421.1 485909 D 246194 CDS YP_359422.1 78044355 3727473 486396..487121 1 NC_007503.1 identified by similarity to SP:O34752; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 487121 lgt 3727473 lgt Carboxydothermus hydrogenoformans Z-2901 prolipoprotein diacylglyceryl transferase YP_359422.1 486396 D 246194 CDS YP_359423.1 78045059 3728185 487105..487419 1 NC_007503.1 selenoprotein; identified by similarity to SP:P04140; mercuric transport protein, selenocysteine-containing 487419 3728185 CHY_0565 Carboxydothermus hydrogenoformans Z-2901 mercuric transport protein, selenocysteine-containing YP_359423.1 487105 D 246194 CDS YP_359424.1 78044130 3727246 487434..487814 1 NC_007503.1 identified by similarity to GB:BAB81291.1; match to protein family HMM PF00581; rhodanese-like domain-containing protein 487814 3727246 CHY_0566 Carboxydothermus hydrogenoformans Z-2901 rhodanese-like domain-containing protein YP_359424.1 487434 D 246194 CDS YP_359425.1 78043783 3726639 complement(487863..488102) 1 NC_007503.1 identified by similarity to SP:P37687; match to protein family HMM PF00462; glutaredoxin 488102 3726639 CHY_0567 Carboxydothermus hydrogenoformans Z-2901 glutaredoxin YP_359425.1 487863 R 246194 CDS YP_359426.1 78043513 3726562 488261..488686 1 NC_007503.1 identified by match to protein family HMM PF02915; rubrerythrin 488686 3726562 CHY_0568 Carboxydothermus hydrogenoformans Z-2901 rubrerythrin YP_359426.1 488261 D 246194 CDS YP_359427.1 78042861 3727076 488797..489798 1 NC_007503.1 identified by match to protein family HMM PF01569; PAP2 family protein 489798 3727076 CHY_0569 Carboxydothermus hydrogenoformans Z-2901 PAP2 family protein YP_359427.1 488797 D 246194 CDS YP_359428.1 78044741 3727864 489910..490851 1 NC_007503.1 identified by match to protein family HMM PF03308; match to protein family HMM TIGR00750; LAO/AO transport system ATPase 490851 3727864 CHY_0570 Carboxydothermus hydrogenoformans Z-2901 LAO/AO transport system ATPase YP_359428.1 489910 D 246194 CDS YP_359429.1 78044451 3727569 490851..491432 1 NC_007503.1 identified by similarity to GP:151155; match to protein family HMM PF02572; cob(I)alamin adenosyltransferase 491432 3727569 CHY_0571 Carboxydothermus hydrogenoformans Z-2901 cob(I)alamin adenosyltransferase YP_359429.1 490851 D 246194 CDS YP_359430.1 78043839 3726580 491557..493185 1 NC_007503.1 identified by match to protein family HMM PF00501; acetyl-coenzyme A synthetase 493185 3726580 CHY_0572 Carboxydothermus hydrogenoformans Z-2901 acetyl-coenzyme A synthetase YP_359430.1 491557 D 246194 CDS YP_359431.1 78044310 3727427 complement(495327..495863) 1 NC_007503.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; keto/oxoacid ferredoxin oxidoreductase subunit gamma 495863 3727427 CHY_0575 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit gamma YP_359431.1 495327 R 246194 CDS YP_359432.1 78044112 3727228 complement(495865..496608) 1 NC_007503.1 identified by match to protein family HMM PF02775; keto/oxoacid ferredoxin oxidoreductase subunit beta 496608 3727228 CHY_0576 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit beta YP_359432.1 495865 R 246194 CDS YP_359433.1 78043048 3726424 complement(496608..497669) 1 NC_007503.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 497669 3726424 CHY_0577 Carboxydothermus hydrogenoformans Z-2901 2-ketoisovalerate ferredoxin reductase YP_359433.1 496608 R 246194 CDS YP_359434.1 78045208 3728334 complement(497670..497879) 1 NC_007503.1 identified by match to protein family HMM PF00037; keto/oxoacid ferredoxin oxidoreductase subunit delta 497879 3728334 CHY_0578 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit delta YP_359434.1 497670 R 246194 CDS YP_359435.1 78043123 3728661 complement(497881..498924) 1 NC_007503.1 identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812; leucine dehydrogenase 498924 ldh 3728661 ldh Carboxydothermus hydrogenoformans Z-2901 leucine dehydrogenase YP_359435.1 497881 R 246194 CDS YP_359436.1 78043892 3726515 498929..499039 1 NC_007503.1 hypothetical protein 499039 3726515 CHY_0580 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359436.1 498929 D 246194 CDS YP_359437.1 78042677 3728503 complement(499069..501087) 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; Fis family transcriptional regulator 501087 3728503 CHY_0581 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_359437.1 499069 R 246194 CDS YP_359438.1 78045195 3728321 501231..502478 1 NC_007503.1 identified by match to protein family HMM PF05034; match to protein family HMM PF07476; match to protein family HMM TIGR01502; methylaspartate ammonia-lyase 502478 3728321 CHY_0582 Carboxydothermus hydrogenoformans Z-2901 methylaspartate ammonia-lyase YP_359438.1 501231 D 246194 CDS YP_359439.1 78044422 3727540 502479..503858 1 NC_007503.1 identified by similarity to PIR:H85574; hypothetical protein 503858 3727540 CHY_0583 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359439.1 502479 D 246194 CDS YP_359440.1 78043678 3726709 503842..504156 1 NC_007503.1 identified by similarity to PIR:G90723; hypothetical protein 504156 3726709 CHY_0584 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359440.1 503842 D 246194 CDS YP_359441.1 78042944 3727004 504169..504720 1 NC_007503.1 identified by similarity to SP:Q03221; match to protein family HMM PF00265; thymidine kinase 504720 tdk 3727004 tdk Carboxydothermus hydrogenoformans Z-2901 thymidine kinase YP_359441.1 504169 D 246194 CDS YP_359442.1 78045184 3728310 504861..505253 1 NC_007503.1 identified by similarity to GB:BAB59896.1; match to protein family HMM PF02629; CoA-binding protein 505253 3728310 CHY_0586 Carboxydothermus hydrogenoformans Z-2901 CoA-binding protein YP_359442.1 504861 D 246194 CDS YP_359443.1 78044507 3727626 505271..505837 1 NC_007503.1 identified by similarity to GB:AAO36151.1; match to protein family HMM PF01814; hypothetical protein 505837 3727626 CHY_0587 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359443.1 505271 D 246194 CDS YP_359444.1 78042654 3726318 505851..507269 1 NC_007503.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family protein drug resistance transporter 507269 3726318 CHY_0588 Carboxydothermus hydrogenoformans Z-2901 EmrB/QacA family protein drug resistance transporter YP_359444.1 505851 D 246194 CDS YP_359445.1 78044847 3727972 507286..508212 1 NC_007503.1 identified by similarity to GB:AAM01575.1; hypothetical protein 508212 3727972 CHY_0589 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359445.1 507286 D 246194 CDS YP_359446.1 78044149 3727265 508300..508986 1 NC_007503.1 hypothetical protein 508986 3727265 CHY_0590 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359446.1 508300 D 246194 CDS YP_359447.1 78045093 3728219 508983..509990 1 NC_007503.1 identified by similarity to GB:AAN50342.1; match to protein family HMM PF02515; CAIB/BAIF family protein 509990 3728219 CHY_0591 Carboxydothermus hydrogenoformans Z-2901 CAIB/BAIF family protein YP_359447.1 508983 D 246194 CDS YP_359448.1 78043090 3726368 complement(510001..510267) 1 NC_007503.1 hypothetical protein 510267 3726368 CHY_0592 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359448.1 510001 R 246194 CDS YP_359449.1 78042621 3727107 510321..511919 1 NC_007503.1 identified by similarity to SP:Q00594; match to protein family HMM PF00501; medium-chain-fatty-acid--CoA ligase 511919 alkK 3727107 alkK Carboxydothermus hydrogenoformans Z-2901 medium-chain-fatty-acid--CoA ligase YP_359449.1 510321 D 246194 CDS YP_359450.1 78043303 3728608 512094..512639 1 NC_007503.1 identified by similarity to GB:AAN51331.1; match to protein family HMM PF01661; hypothetical protein 512639 3728608 CHY_0594 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359450.1 512094 D 246194 CDS YP_359451.1 78044261 3727378 512656..513327 1 NC_007503.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; FMN reductase, NADPH-dependent 513327 3727378 CHY_0595 Carboxydothermus hydrogenoformans Z-2901 FMN reductase, NADPH-dependent YP_359451.1 512656 D 246194 CDS YP_359452.1 78043033 3726448 complement(513368..514363) 1 NC_007503.1 identified by match to protein family HMM PF01384; phosphate transporter 514363 3726448 CHY_0596 Carboxydothermus hydrogenoformans Z-2901 phosphate transporter YP_359452.1 513368 R 246194 CDS YP_359453.1 78043616 3728827 complement(514356..514982) 1 NC_007503.1 identified by similarity to OMNI:NTL01CA3047; match to protein family HMM PF01865; hypothetical protein 514982 3728827 CHY_0597 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359453.1 514356 R 246194 CDS YP_359454.1 78043375 3728760 515225..515641 1 NC_007503.1 identified by match to protein family HMM PF01797; ISChy9, transposase orfA 515641 3728760 CHY_0598 Carboxydothermus hydrogenoformans Z-2901 ISChy9, transposase orfA YP_359454.1 515225 D 246194 CDS YP_359455.1 78043603 3728756 515598..517184 1 NC_007503.1 ISChy9, transposase orfB 517184 3728756 CHY_0599 Carboxydothermus hydrogenoformans Z-2901 ISChy9, transposase orfB YP_359455.1 515598 D 246194 CDS YP_359456.1 78044793 3727918 517219..518037 1 NC_007503.1 identified by similarity to GB:BAC12160.1; match to protein family HMM PF00753; metallo-beta-lactamase 518037 3727918 CHY_0600 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_359456.1 517219 D 246194 CDS YP_359457.1 78043983 3726218 518216..520843 1 NC_007503.1 identified by similarity to SP:P81186; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; nitrate reductase 520843 napA 3726218 napA Carboxydothermus hydrogenoformans Z-2901 nitrate reductase YP_359457.1 518216 D 246194 CDS YP_359458.1 78042641 3726305 520850..521461 1 NC_007503.1 identified by match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur binding subunit 521461 3726305 CHY_0602 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_359458.1 520850 D 246194 CDS YP_359459.1 78044845 3727970 521473..522096 1 NC_007503.1 hypothetical protein 522096 3727970 CHY_0603 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359459.1 521473 D 246194 CDS YP_359460.1 78043912 3726535 522116..523480 1 NC_007503.1 NapC/NirT family cyctochrome c 523480 3726535 CHY_0604 Carboxydothermus hydrogenoformans Z-2901 NapC/NirT family cyctochrome c YP_359460.1 522116 D 246194 CDS YP_359461.1 78043110 3726331 523579..525174 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 525174 3726331 CHY_0605 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_359461.1 523579 D 246194 CDS YP_359462.1 78045027 3728152 525167..525847 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 525847 3728152 CHY_0606 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_359462.1 525167 D 246194 CDS YP_359463.1 78044270 3727387 525863..526249 1 NC_007503.1 identified by match to protein family HMM PF00903; glyoxalase 526249 3727387 CHY_0607 Carboxydothermus hydrogenoformans Z-2901 glyoxalase YP_359463.1 525863 D 246194 CDS YP_359464.1 78042652 3726316 complement(526348..527592) 1 NC_007503.1 identified by similarity to SP:P32050; match to protein family HMM PF02335; cytochrome c552 527592 3726316 CHY_0608 Carboxydothermus hydrogenoformans Z-2901 cytochrome c552 YP_359464.1 526348 R 246194 CDS YP_359465.1 78043332 3728657 527742..528905 1 NC_007503.1 hypothetical protein 528905 3728657 CHY_0609 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359465.1 527742 D 246194 CDS YP_359466.1 78043680 3726711 528921..529022 1 NC_007503.1 hypothetical protein 529022 3726711 CHY_0610 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359466.1 528921 D 246194 CDS YP_359467.1 78044263 3727380 529049..529714 1 NC_007503.1 identified by similarity to PIR:B70353; hypothetical protein 529714 3727380 CHY_0611 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359467.1 529049 D 246194 CDS YP_359468.1 78043000 3726492 529777..529872 1 NC_007503.1 hypothetical protein 529872 3726492 CHY_0612 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359468.1 529777 D 246194 CDS YP_359469.1 78042878 3727054 529901..530743 1 NC_007503.1 hypothetical protein 530743 3727054 CHY_0613 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359469.1 529901 D 246194 CDS YP_359470.1 78044521 3727640 531060..531398 1 NC_007503.1 hypothetical protein 531398 3727640 CHY_0614 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359470.1 531060 D 246194 CDS YP_359471.1 78043752 3726278 531421..531516 1 NC_007503.1 hypothetical protein 531516 3726278 CHY_0615 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359471.1 531421 D 246194 CDS YP_359472.1 78044053 3727168 complement(531488..531667) 1 NC_007503.1 hypothetical protein 531667 3727168 CHY_0616 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359472.1 531488 R 246194 CDS YP_359473.1 78045111 3728237 531976..532680 1 NC_007503.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 532680 sigK 3728237 sigK Carboxydothermus hydrogenoformans Z-2901 sporulation sigma factor SigK YP_359473.1 531976 D 246194 CDS YP_359474.1 78043734 3728479 complement(532714..534549) 1 NC_007503.1 hypothetical protein 534549 3728479 CHY_0618 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359474.1 532714 R 246194 CDS YP_359475.1 78044816 3727941 534833..535171 1 NC_007503.1 identified by similarity to GB:AAO82283.1; match to protein family HMM PF00126; molybdenum transporter 535171 3727941 CHY_0619 Carboxydothermus hydrogenoformans Z-2901 molybdenum transporter YP_359475.1 534833 D 246194 CDS YP_359476.1 78044772 3727896 535176..535700 1 NC_007503.1 identified by match to protein family HMM PF02417; chromate transporter 535700 3727896 CHY_0620 Carboxydothermus hydrogenoformans Z-2901 chromate transporter YP_359476.1 535176 D 246194 CDS YP_359477.1 78044523 3727642 535712..536728 1 NC_007503.1 identified by match to protein family HMM PF00994; molybdopterin-binding domain-containing protein 536728 3727642 CHY_0621 Carboxydothermus hydrogenoformans Z-2901 molybdopterin-binding domain-containing protein YP_359477.1 535712 D 246194 CDS YP_359478.1 78043911 3726534 536739..537287 1 NC_007503.1 identified by similarity to GB:AAP28271.1; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668; HAD superfamily hydrolase 537287 3726534 CHY_0622 Carboxydothermus hydrogenoformans Z-2901 HAD superfamily hydrolase YP_359478.1 536739 D 246194 CDS YP_359479.1 78043133 3728671 537271..538113 1 NC_007503.1 identified by match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 538113 aroE 3728671 aroE Carboxydothermus hydrogenoformans Z-2901 shikimate 5-dehydrogenase YP_359479.1 537271 D 246194 CDS YP_359480.1 78044224 3727341 538167..539321 1 NC_007503.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 539321 aroC 3727341 aroC Carboxydothermus hydrogenoformans Z-2901 chorismate synthase YP_359480.1 538167 D 246194 CDS YP_359481.1 78043432 3728895 539374..539598 1 NC_007503.1 identified by similarity to GB:AAM23385.1; hypothetical protein 539598 3728895 CHY_0625 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359481.1 539374 D 246194 CDS YP_359482.1 78043684 3726247 539614..540780 1 NC_007503.1 identified by similarity to GB:BAC15100.1; match to protein family HMM PF04143; hypothetical protein 540780 3726247 CHY_0626 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359482.1 539614 D 246194 CDS YP_359483.1 78042963 3726825 540840..541313 1 NC_007503.1 identified by similarity to OMNI:NTL01AA00822; lipoprotein 541313 3726825 CHY_0627 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_359483.1 540840 D 246194 CDS YP_359484.1 78043535 3726721 complement(541344..542249) 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 542249 3726721 CHY_0628 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_359484.1 541344 R 246194 CDS YP_359485.1 78042786 3726881 542719..544308 1 NC_007503.1 identified by similarity to SP:P31102; match to protein family HMM PF01202; match to protein family HMM PF01761; match to protein family HMM TIGR01357; shikimate kinase 544308 aroKB 3726881 aroKB Carboxydothermus hydrogenoformans Z-2901 shikimate kinase YP_359485.1 542719 D 246194 CDS YP_359486.1 78044711 3727833 544371..546077 1 NC_007503.1 identified by similarity to SP:P22608; match to protein family HMM PF00437; match to protein family HMM PF05157; type IV pilus assembly protein PilB 546077 pilB 3727833 pilB Carboxydothermus hydrogenoformans Z-2901 type IV pilus assembly protein PilB YP_359486.1 544371 D 246194 CDS YP_359487.1 78044094 3727210 546099..547187 1 NC_007503.1 identified by similarity to GB:AAB30824.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420; type IV pilus retraction protein PilT 547187 pilT 3727210 pilT Carboxydothermus hydrogenoformans Z-2901 type IV pilus retraction protein PilT YP_359487.1 546099 D 246194 CDS YP_359488.1 78043922 3726350 547285..548493 1 NC_007503.1 identified by similarity to SP:P22609; match to protein family HMM PF00482; type IV pilus assembly protein PilC 548493 pilC 3726350 pilC Carboxydothermus hydrogenoformans Z-2901 type IV pilus assembly protein PilC YP_359488.1 547285 D 246194 CDS YP_359489.1 78043168 3728687 548579..549001 1 NC_007503.1 identified by similarity to GP:4139240; match to protein family HMM PF07963; match to protein family HMM TIGR02532; general secretion pathway protein G 549001 gspG 3728687 gspG Carboxydothermus hydrogenoformans Z-2901 general secretion pathway protein G YP_359489.1 548579 D 246194 CDS YP_359490.1 78045067 3728193 549064..549813 1 NC_007503.1 identified by similarity to SP:P45794; match to protein family HMM PF01478; match to protein family HMM PF06750; type IV prepilin peptidase 549813 pilD 3728193 pilD Carboxydothermus hydrogenoformans Z-2901 type IV prepilin peptidase YP_359490.1 549064 D 246194 CDS YP_359491.1 78044377 3727495 549786..550238 1 NC_007503.1 identified by similarity to GB:AAB48594.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin 550238 pilA 3727495 pilA Carboxydothermus hydrogenoformans Z-2901 type IV pilin YP_359491.1 549786 D 246194 CDS YP_359492.1 78043901 3726524 550250..550621 1 NC_007503.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilus operon protein 550621 3726524 CHY_0636 Carboxydothermus hydrogenoformans Z-2901 type IV pilus operon protein YP_359492.1 550250 D 246194 CDS YP_359493.1 78043266 3728552 550626..551138 1 NC_007503.1 identified by similarity to OMNI:NTL01XF00476; match to protein family HMM PF07963; match to protein family HMM TIGR02532; prepilin peptidase domain-containing protein 551138 3728552 CHY_0637 Carboxydothermus hydrogenoformans Z-2901 prepilin peptidase domain-containing protein YP_359493.1 550626 D 246194 CDS YP_359494.1 78044930 3728055 551150..552295 1 NC_007503.1 hypothetical protein 552295 3728055 CHY_0638 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359494.1 551150 D 246194 CDS YP_359495.1 78043775 3726808 552407..553438 1 NC_007503.1 identified by similarity to PIR:S75816; match to protein family HMM TIGR01175; type IV pilus assembly protein PilM 553438 pilM 3726808 pilM Carboxydothermus hydrogenoformans Z-2901 type IV pilus assembly protein PilM YP_359495.1 552407 D 246194 CDS YP_359496.1 78044456 3727575 553431..553961 1 NC_007503.1 identified by match to protein family HMM PF05137; type IV pilus assembly protein PilN 553961 pilN 3727575 pilN Carboxydothermus hydrogenoformans Z-2901 type IV pilus assembly protein PilN YP_359496.1 553431 D 246194 CDS YP_359497.1 78044661 3727783 553974..554723 1 NC_007503.1 hypothetical protein 554723 3727783 CHY_0641 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359497.1 553974 D 246194 CDS YP_359498.1 78043221 3728585 554833..556221 1 NC_007503.1 identified by similarity to SP:P46473; match to protein family HMM PF01523; tldD protein 556221 tldD 3728585 tldD Carboxydothermus hydrogenoformans Z-2901 tldD protein YP_359498.1 554833 D 246194 CDS YP_359499.1 78044390 3727508 556439..556591 1 NC_007503.1 hypothetical protein 556591 3727508 CHY_0643 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359499.1 556439 D 246194 CDS YP_359500.1 78044119 3727235 556710..558773 1 NC_007503.1 identified by match to protein family HMM TIGR01905; cytochrome c 558773 3727235 CHY_0644 Carboxydothermus hydrogenoformans Z-2901 cytochrome c YP_359500.1 556710 D 246194 CDS YP_359501.1 78044049 3727164 complement(558861..559001) 1 NC_007503.1 hypothetical protein 559001 3727164 CHY_0645 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359501.1 558861 R 246194 CDS YP_359502.1 78043040 3726455 559113..561122 1 NC_007503.1 cytochrome c 561122 3726455 CHY_0646 Carboxydothermus hydrogenoformans Z-2901 cytochrome c YP_359502.1 559113 D 246194 CDS YP_359503.1 78043627 3726755 561140..563683 1 NC_007503.1 hypothetical protein 563683 3726755 CHY_0647 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359503.1 561140 D 246194 CDS YP_359504.1 78044388 3727506 complement(563705..563812) 1 NC_007503.1 hypothetical protein 563812 3727506 CHY_0648 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359504.1 563705 R 246194 CDS YP_359505.1 78044584 3727704 563907..564125 1 NC_007503.1 hypothetical protein 564125 3727704 CHY_0649 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359505.1 563907 D 246194 CDS YP_359506.1 78045154 3728280 564148..564252 1 NC_007503.1 hypothetical protein 564252 3728280 CHY_0650 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359506.1 564148 D 246194 CDS YP_359507.1 78042705 3726955 564311..564733 1 NC_007503.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 564733 3726955 CHY_0651 Carboxydothermus hydrogenoformans Z-2901 FUR family transcriptional regulator YP_359507.1 564311 D 246194 CDS YP_359508.1 78043378 3728763 564730..565611 1 NC_007503.1 identified by match to protein family HMM PF01297; ABC transporter substrate-binding protein 565611 3728763 CHY_0652 Carboxydothermus hydrogenoformans Z-2901 ABC transporter substrate-binding protein YP_359508.1 564730 D 246194 CDS YP_359509.1 78045197 3728323 566273..567073 1 NC_007503.1 identified by similarity to GB:AAO79939.1; match to protein family HMM PF00950; ABC transporter permease 567073 3728323 CHY_0654 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_359509.1 566273 D 246194 CDS YP_359510.1 78044916 3728041 567075..568205 1 NC_007503.1 identified by similarity to SP:O34358; match to protein family HMM PF00089; match to protein family HMM PF00595; serine protease Do 568205 htrA 3728041 htrA Carboxydothermus hydrogenoformans Z-2901 serine protease Do YP_359510.1 567075 D 246194 CDS YP_359511.1 78043700 3726263 568255..569616 1 NC_007503.1 identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 569616 3726263 CHY_0656 Carboxydothermus hydrogenoformans Z-2901 pmbA protein YP_359511.1 568255 D 246194 CDS YP_359512.1 78043390 3728775 569788..571071 1 NC_007503.1 identified by similarity to SP:P33357; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; sensor histidine kinase 571071 3728775 CHY_0657 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_359512.1 569788 D 246194 CDS YP_359513.1 78044195 3727312 571061..571816 1 NC_007503.1 identified by similarity to SP:P77742; match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 571816 3727312 CHY_0658 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_359513.1 571061 D 246194 CDS YP_359514.1 78044614 3727735 571935..573878 1 NC_007503.1 identified by similarity to SP:P31638; match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetyl-CoA synthetase 573878 acoE 3727735 acoE Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA synthetase YP_359514.1 571935 D 246194 CDS YP_359515.1 78043219 3728583 complement(573875..574216) 1 NC_007503.1 hypothetical protein 574216 3728583 CHY_0660 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359515.1 573875 R 246194 CDS YP_359516.1 78044552 3727671 574376..575203 1 NC_007503.1 hypothetical protein 575203 3727671 CHY_0661 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359516.1 574376 D 246194 CDS YP_359517.1 78043566 3726285 575187..575294 1 NC_007503.1 hypothetical protein 575294 3726285 CHY_0662 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359517.1 575187 D 246194 CDS YP_359518.1 78043285 3728728 575284..576168 1 NC_007503.1 hypothetical protein 576168 3728728 CHY_0663 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359518.1 575284 D 246194 CDS YP_359519.1 78044717 3727839 576289..576660 1 NC_007503.1 identified by similarity to SP:O84102; match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-ACP synthase 576660 acpS 3727839 acpS Carboxydothermus hydrogenoformans Z-2901 holo-ACP synthase YP_359519.1 576289 D 246194 CDS YP_359520.1 78043971 3726751 576662..578236 1 NC_007503.1 identified by similarity to GB:AAM25329.1; match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; hypothetical protein 578236 3726751 CHY_0665 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359520.1 576662 D 246194 CDS YP_359521.1 78043495 3726602 578428..579546 1 NC_007503.1 identified by match to protein family HMM PF01262; match to protein family HMM PF02882; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase 579546 ald 3726602 ald Carboxydothermus hydrogenoformans Z-2901 alanine dehydrogenase YP_359521.1 578428 D 246194 CDS YP_359522.1 78042901 3727039 579627..580733 1 NC_007503.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase 580733 alr 3727039 alr Carboxydothermus hydrogenoformans Z-2901 alanine racemase YP_359522.1 579627 D 246194 CDS YP_359523.1 78044606 3727727 580936..582126 1 NC_007503.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 582126 3727727 CHY_0668 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359523.1 580936 D 246194 CDS YP_359524.1 78044038 3727153 582147..584342 1 NC_007503.1 identified by similarity to PIR:AB1848; match to protein family HMM PF06202; hypothetical protein 584342 3727153 CHY_0669 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359524.1 582147 D 246194 CDS YP_359525.1 78044465 3727584 584354..585787 1 NC_007503.1 identified by similarity to SP:P31677; match to protein family HMM PF00982; alpha, alpha-trehalose-phosphate synthase 585787 otsA 3727584 otsA Carboxydothermus hydrogenoformans Z-2901 alpha, alpha-trehalose-phosphate synthase YP_359525.1 584354 D 246194 CDS YP_359526.1 78044698 3727820 585780..586526 1 NC_007503.1 identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484; trehalose-phosphatase 586526 otsB 3727820 otsB Carboxydothermus hydrogenoformans Z-2901 trehalose-phosphatase YP_359526.1 585780 D 246194 CDS YP_359527.1 78043772 3726805 complement(586480..587379) 1 NC_007503.1 identified by similarity to PIR:A69437; match to protein family HMM PF00753; metallo-beta-lactamase 587379 3726805 CHY_0672 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_359527.1 586480 R 246194 CDS YP_359528.1 78043188 3728707 587832..588101 1 NC_007503.1 identified by similarity to GB:BAC12625.1; long-chain-fatty-acid--CoA ligase, truncation 588101 3728707 CHY_0673 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase, truncation YP_359528.1 587832 D 246194 CDS YP_359529.1 78044775 3727899 complement(588128..588952) 1 NC_007503.1 identified by similarity to SP:P54421; similarity to SP:Q01838; match to protein family HMM PF00877; match to protein family HMM PF01476; cell-wall associated endopeptidase 588952 3727899 CHY_0674 Carboxydothermus hydrogenoformans Z-2901 cell-wall associated endopeptidase YP_359529.1 588128 R 246194 CDS YP_359530.1 78044999 3728124 588874..589038 1 NC_007503.1 hypothetical protein 589038 3728124 CHY_0675 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359530.1 588874 D 246194 CDS YP_359531.1 78044854 3727979 589107..592412 1 NC_007503.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR01445; match to protein family HMM TIGR02504; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, intein-containing 592412 nrdJ 3727979 nrdJ Carboxydothermus hydrogenoformans Z-2901 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, intein-containing YP_359531.1 589107 D 246194 CDS YP_359532.1 78043349 3728538 592764..593588 1 NC_007503.1 identified by match to protein family HMM PF00376; match to protein family HMM PF01381; match to protein family HMM PF07883; MerR family transcriptional regulator 593588 3728538 CHY_0677 Carboxydothermus hydrogenoformans Z-2901 MerR family transcriptional regulator YP_359532.1 592764 D 246194 CDS YP_359533.1 78043954 3726734 593647..595062 1 NC_007503.1 identified by similarity to SP:P77671; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00857; allantoinase 595062 allB 3726734 allB Carboxydothermus hydrogenoformans Z-2901 allantoinase YP_359533.1 593647 D 246194 CDS YP_359534.1 78045028 3728153 595114..595689 1 NC_007503.1 identified by match to protein family HMM PF00857; isochorismatase 595689 3728153 CHY_0679 Carboxydothermus hydrogenoformans Z-2901 isochorismatase YP_359534.1 595114 D 246194 CDS YP_359535.1 78042631 3727117 595757..596308 1 NC_007503.1 identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 596308 3727117 CHY_0680 Carboxydothermus hydrogenoformans Z-2901 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_359535.1 595757 D 246194 CDS YP_359536.1 78043702 3726654 596330..597682 1 NC_007503.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 597682 3726654 CHY_0681 Carboxydothermus hydrogenoformans Z-2901 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_359536.1 596330 D 246194 CDS YP_359537.1 78044315 3727432 597696..597968 1 NC_007503.1 identified by similarity to SP:P37448; match to protein family HMM PF00936; propanediol utilization protein PduA 597968 pduA 3727432 pduA Carboxydothermus hydrogenoformans Z-2901 propanediol utilization protein PduA YP_359537.1 597696 D 246194 CDS YP_359538.1 78044901 3728026 598007..598957 1 NC_007503.1 identified by similarity to SP:P37449; propanediol utilization protein pduB 598957 3728026 CHY_0683 Carboxydothermus hydrogenoformans Z-2901 propanediol utilization protein pduB YP_359538.1 598007 D 246194 CDS YP_359539.1 78042706 3726956 598972..599325 1 NC_007503.1 identified by match to protein family HMM PF00936; microcompartments family protein 599325 3726956 CHY_0684 Carboxydothermus hydrogenoformans Z-2901 microcompartments family protein YP_359539.1 598972 D 246194 CDS YP_359540.1 78043317 3728642 599350..599634 1 NC_007503.1 identified by match to protein family HMM PF00936; microcompartments family protein 599634 3728642 CHY_0685 Carboxydothermus hydrogenoformans Z-2901 microcompartments family protein YP_359540.1 599350 D 246194 CDS YP_359541.1 78044167 3727283 599683..600492 1 NC_007503.1 identified by similarity to SP:P41794; match to protein family HMM TIGR02529; ethanolamine utilization protein EutJ 600492 eutJ 3727283 eutJ Carboxydothermus hydrogenoformans Z-2901 ethanolamine utilization protein EutJ YP_359541.1 599683 D 246194 CDS YP_359542.1 78044635 3727756 600503..601264 1 NC_007503.1 hypothetical protein 601264 3727756 CHY_0687 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359542.1 600503 D 246194 CDS YP_359543.1 78045187 3728313 601276..601548 1 NC_007503.1 identified by similarity to SP:P41792; match to protein family HMM PF03319; ethanolamine utilization protein EutN 601548 eutN 3728313 eutN Carboxydothermus hydrogenoformans Z-2901 ethanolamine utilization protein EutN YP_359543.1 601276 D 246194 CDS YP_359544.1 78042715 3726965 601563..603374 1 NC_007503.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01178; adenine deaminase 603374 ade1 3726965 ade1 Carboxydothermus hydrogenoformans Z-2901 adenine deaminase YP_359544.1 601563 D 246194 CDS YP_359545.1 78043119 3726340 603389..604249 1 NC_007503.1 identified by similarity to SP:P19920; match to protein family HMM PF00941; match to protein family HMM PF03450; carbon monoxide dehydrogenase medium subunit 604249 coxM 3726340 coxM Carboxydothermus hydrogenoformans Z-2901 carbon monoxide dehydrogenase medium subunit YP_359545.1 603389 D 246194 CDS YP_359546.1 78043859 3726678 604261..604728 1 NC_007503.1 identified by similarity to SP:P19915; match to protein family HMM PF00111; match to protein family HMM PF01799; (2Fe-2S)-binding protein 604728 3726678 CHY_0691 Carboxydothermus hydrogenoformans Z-2901 (2Fe-2S)-binding protein YP_359546.1 604261 D 246194 CDS YP_359547.1 78044662 3727784 607002..607679 1 NC_007503.1 identified by similarity to GB:AAO82275.1; hypothetical protein 607679 3727784 CHY_0693 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359547.1 607002 D 246194 CDS YP_359548.1 78043232 3728596 607679..608986 1 NC_007503.1 identified by similarity to SP:Q46808; similarity to GB:AAN69811.1; hypothetical protein 608986 3728596 CHY_0694 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359548.1 607679 D 246194 CDS YP_359549.1 78043831 3728441 609015..609932 1 NC_007503.1 identified by match to protein family HMM PF02971; match to protein family HMM PF07837; match to protein family HMM TIGR02024; glutamate formiminotransferase 609932 ftcD 3728441 ftcD Carboxydothermus hydrogenoformans Z-2901 glutamate formiminotransferase YP_359549.1 609015 D 246194 CDS YP_359550.1 78044406 3727524 609989..610612 1 NC_007503.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 610612 fchA1 3727524 fchA1 Carboxydothermus hydrogenoformans Z-2901 methenyltetrahydrofolate cyclohydrolase YP_359550.1 609989 D 246194 CDS YP_359551.1 78045001 3728126 610887..612215 1 NC_007503.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; xanthine/uracil permease 612215 3728126 CHY_0697 Carboxydothermus hydrogenoformans Z-2901 xanthine/uracil permease YP_359551.1 610887 D 246194 CDS YP_359552.1 78043497 3726604 612338..613672 1 NC_007503.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 613672 3726604 CHY_0698 Carboxydothermus hydrogenoformans Z-2901 N-ethylammeline chlorohydrolase YP_359552.1 612338 D 246194 CDS YP_359553.1 78044033 3727148 613682..615394 1 NC_007503.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR01178; adenine deaminase 615394 ade2 3727148 ade2 Carboxydothermus hydrogenoformans Z-2901 adenine deaminase YP_359553.1 613682 D 246194 CDS YP_359554.1 78043987 3726222 615413..616069 1 NC_007503.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; iron-sulfur-dependent L-serine dehydratase subunit beta 616069 sdhB1 3726222 sdhB1 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-dependent L-serine dehydratase subunit beta YP_359554.1 615413 D 246194 CDS YP_359555.1 78044778 3727902 616081..616980 1 NC_007503.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; iron-sulfur-dependent L-serine dehydratase subunit alpha 616980 sdhA1 3727902 sdhA1 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-dependent L-serine dehydratase subunit alpha YP_359555.1 616081 D 246194 CDS YP_359556.1 78043051 3726427 616964..617644 1 NC_007503.1 identified by match to protein family HMM PF04199; cyclase 617644 3726427 CHY_0702 Carboxydothermus hydrogenoformans Z-2901 cyclase YP_359556.1 616964 D 246194 CDS YP_359557.1 78043628 3726756 617815..618402 1 NC_007503.1 identified by similarity to GB:BAC73930.1; match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator/ANTAR domain-containing protein 618402 3726756 CHY_0703 Carboxydothermus hydrogenoformans Z-2901 response regulator/ANTAR domain-containing protein YP_359557.1 617815 D 246194 CDS YP_359558.1 78042986 3726556 618416..619744 1 NC_007503.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase 619744 glnA1 3726556 glnA1 Carboxydothermus hydrogenoformans Z-2901 glutamine synthetase YP_359558.1 618416 D 246194 CDS YP_359559.1 78043307 3728612 619842..621803 1 NC_007503.1 identified by similarity to PIR:S76977; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 621803 3728612 CHY_0705 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_359559.1 619842 D 246194 CDS YP_359560.1 78045082 3728208 621998..623089 1 NC_007503.1 identified by similarity to SP:Q9WYM9; match to protein family HMM PF00310; hypothetical protein 623089 3728208 CHY_0706 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359560.1 621998 D 246194 CDS YP_359561.1 78044813 3727938 623091..624593 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00478; match to protein family HMM PF01645; glutamate synthase-like protein 624593 3727938 CHY_0707 Carboxydothermus hydrogenoformans Z-2901 glutamate synthase-like protein YP_359561.1 623091 D 246194 CDS YP_359562.1 78042743 3726915 624604..625338 1 NC_007503.1 identified by match to protein family HMM PF01493; GXGXG domain-containing protein 625338 3726915 CHY_0708 Carboxydothermus hydrogenoformans Z-2901 GXGXG domain-containing protein YP_359562.1 624604 D 246194 CDS YP_359563.1 78042745 3726917 625412..625984 1 NC_007503.1 identified by similarity to PIR:S70540; match to protein family HMM PF03861; response regulator protein 625984 3726917 CHY_0709 Carboxydothermus hydrogenoformans Z-2901 response regulator protein YP_359563.1 625412 D 246194 CDS YP_359564.1 78043819 3728429 626107..627204 1 NC_007503.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; glutamine synthetase 627204 3728429 CHY_0710 Carboxydothermus hydrogenoformans Z-2901 glutamine synthetase YP_359564.1 626107 D 246194 CDS YP_359565.1 78044110 3727226 627243..628823 1 NC_007503.1 identified by similarity to PIR:E72299; match to protein family HMM PF01645; glutamate synthase-like protein 628823 3727226 CHY_0711 Carboxydothermus hydrogenoformans Z-2901 glutamate synthase-like protein YP_359565.1 627243 D 246194 CDS YP_359566.1 78044873 3727998 628983..630314 1 NC_007503.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase 630314 glnA2 3727998 glnA2 Carboxydothermus hydrogenoformans Z-2901 glutamine synthetase YP_359566.1 628983 D 246194 CDS YP_359567.1 78044229 3727346 630453..631823 1 NC_007503.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase 631823 lpdA 3727346 lpdA Carboxydothermus hydrogenoformans Z-2901 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase YP_359567.1 630453 D 246194 CDS YP_359568.1 78044809 3727934 631844..633139 1 NC_007503.1 identified by similarity to GP:728610; similarity to GP:728611; match to protein family HMM PF02754; heterodisulfide reductase, B/C subunits 633139 3727934 CHY_0714 Carboxydothermus hydrogenoformans Z-2901 heterodisulfide reductase, B/C subunits YP_359568.1 631844 D 246194 CDS YP_359569.1 78042806 3726862 633211..633465 1 NC_007503.1 identified by match to protein family HMM PF01402; CopG family transcriptional regulator 633465 3726862 CHY_0715 Carboxydothermus hydrogenoformans Z-2901 CopG family transcriptional regulator YP_359569.1 633211 D 246194 CDS YP_359570.1 78043692 3726255 633465..633815 1 NC_007503.1 identified by match to protein family HMM PF02452; PemK family regulatory protein 633815 3726255 CHY_0716 Carboxydothermus hydrogenoformans Z-2901 PemK family regulatory protein YP_359570.1 633465 D 246194 CDS YP_359571.1 78043532 3726718 633855..634520 1 NC_007503.1 identified by similarity to GB:AAM25818.1; match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase 634520 3726718 CHY_0717 Carboxydothermus hydrogenoformans Z-2901 glutamine amidotransferase YP_359571.1 633855 D 246194 CDS YP_359572.1 78043381 3728766 634517..635647 1 NC_007503.1 identified by match to protein family HMM PF01979; amidohydrolase 635647 3728766 CHY_0718 Carboxydothermus hydrogenoformans Z-2901 amidohydrolase YP_359572.1 634517 D 246194 CDS YP_359573.1 78044142 3727258 635756..636139 1 NC_007503.1 identified by match to protein family HMM PF00072; response regulator 636139 3727258 CHY_0719 Carboxydothermus hydrogenoformans Z-2901 response regulator YP_359573.1 635756 D 246194 CDS YP_359574.1 78044478 3727597 636189..636374 1 NC_007503.1 hypothetical protein 636374 3727597 CHY_0720 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359574.1 636189 D 246194 CDS YP_359575.1 78043802 3726620 636271..636480 1 NC_007503.1 hypothetical protein 636480 3726620 CHY_0721 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359575.1 636271 D 246194 CDS YP_359576.1 78043152 3728515 636473..636934 1 NC_007503.1 identified by similarity to GB:BAB81870.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 636934 3728515 CHY_0722 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359576.1 636473 D 246194 CDS YP_359577.1 78042765 3726898 636925..637572 1 NC_007503.1 identified by match to protein family HMM PF00814; glycoprotease-like protein 637572 3726898 CHY_0723 Carboxydothermus hydrogenoformans Z-2901 glycoprotease-like protein YP_359577.1 636925 D 246194 CDS YP_359578.1 78044332 3727449 637596..638030 1 NC_007503.1 identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 638030 rimI 3727449 rimI Carboxydothermus hydrogenoformans Z-2901 ribosomal-protein-alanine acetyltransferase YP_359578.1 637596 D 246194 CDS YP_359579.1 78043782 3726638 638031..639032 1 NC_007503.1 identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase 639032 gcp 3726638 gcp Carboxydothermus hydrogenoformans Z-2901 O-sialoglycoprotein endopeptidase YP_359579.1 638031 D 246194 CDS YP_359580.1 78044796 3727921 complement(639114..639788) 1 NC_007503.1 identified by similarity to GB:AAO82088.1; hypothetical protein 639788 3727921 CHY_0726 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359580.1 639114 R 246194 CDS YP_359581.1 78044212 3727329 639878..641176 1 NC_007503.1 identified by similarity to GB:AAK47531.1; match to protein family HMM PF04055; radical SAM domain-containing protein 641176 3727329 CHY_0727 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359581.1 639878 D 246194 CDS YP_359582.1 78043286 3728729 641262..642542 1 NC_007503.1 identified by similarity to SP:P76085; phenylacetate-coenzyme A ligase 642542 paaK2 3728729 paaK2 Carboxydothermus hydrogenoformans Z-2901 phenylacetate-coenzyme A ligase YP_359582.1 641262 D 246194 CDS YP_359583.1 78042649 3726313 642557..642988 1 NC_007503.1 identified by match to protein family HMM PF01842; ACT domain-containing protein 642988 3726313 CHY_0729 Carboxydothermus hydrogenoformans Z-2901 ACT domain-containing protein YP_359583.1 642557 D 246194 CDS YP_359584.1 78042640 3726304 643123..643701 1 NC_007503.1 identified by match to protein family HMM PF01812; 5-formyltetrahydrofolate cyclo-ligase 643701 3726304 CHY_0730 Carboxydothermus hydrogenoformans Z-2901 5-formyltetrahydrofolate cyclo-ligase YP_359584.1 643123 D 246194 CDS YP_359585.1 78044572 3727692 643875..644360 1 NC_007503.1 identified by similarity to GP:2865515; match to protein family HMM PF01257; match to protein family HMM TIGR01958; Fe-hydrogenase subunit gamma 644360 hydC 3727692 hydC Carboxydothermus hydrogenoformans Z-2901 Fe-hydrogenase subunit gamma YP_359585.1 643875 D 246194 CDS YP_359586.1 78044500 3727619 644371..646149 1 NC_007503.1 identified by similarity to OMNI:TM1425; match to protein family HMM PF00037; match to protein family HMM PF01512; Fe-hydrogenase subunit beta 646149 hydB 3727619 hydB Carboxydothermus hydrogenoformans Z-2901 Fe-hydrogenase subunit beta YP_359586.1 644371 D 246194 CDS YP_359587.1 78044647 3727769 646163..648844 1 NC_007503.1 selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591; NAD-dependent formate dehydrogenase subunit alpha, selenocysteine-containing 648844 fdhA 3727769 fdhA Carboxydothermus hydrogenoformans Z-2901 NAD-dependent formate dehydrogenase subunit alpha, selenocysteine-containing YP_359587.1 646163 D 246194 CDS YP_359588.1 78044101 3727217 648927..649115 1 NC_007503.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 649115 3727217 CHY_0734 Carboxydothermus hydrogenoformans Z-2901 4-oxalocrotonate tautomerase YP_359588.1 648927 D 246194 CDS YP_359589.1 78044076 3727192 649247..649732 1 NC_007503.1 identified by similarity to SP:P31894; match to protein family HMM PF00037; (Fe-S)-binding protein 649732 cooF2 3727192 cooF2 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359589.1 649247 D 246194 CDS YP_359590.1 78044052 3727167 649737..651638 1 NC_007503.1 identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase catalytic subunit 651638 cooSIV 3727167 cooSIV Carboxydothermus hydrogenoformans Z-2901 carbon-monoxide dehydrogenase catalytic subunit YP_359590.1 649737 D 246194 CDS YP_359591.1 78043443 3728906 651652..652836 1 NC_007503.1 identified by similarity to SP:P42435; match to protein family HMM PF00070; match to protein family HMM PF07992; nitrite reductase 652836 3728906 CHY_0737 Carboxydothermus hydrogenoformans Z-2901 nitrite reductase YP_359591.1 651652 D 246194 CDS YP_359592.1 78042883 3727059 652888..653385 1 NC_007503.1 identified by match to protein family HMM PF02915; rubrerythrin 653385 3727059 CHY_0738 Carboxydothermus hydrogenoformans Z-2901 rubrerythrin YP_359592.1 652888 D 246194 CDS YP_359593.1 78044991 3728116 653391..653507 1 NC_007503.1 hypothetical protein 653507 3728116 CHY_0739 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359593.1 653391 D 246194 CDS YP_359594.1 78044268 3727385 653593..654249 1 NC_007503.1 selenoprotein; identified by similarity to SP:P42974; similarity to OMNI:NTL01PF0094; match to protein family HMM TIGR02187; dehydrogenase, selenocysteine-containing 654249 3727385 CHY_0740 Carboxydothermus hydrogenoformans Z-2901 dehydrogenase, selenocysteine-containing YP_359594.1 653593 D 246194 CDS YP_359595.1 78043704 3726656 654337..654996 1 NC_007503.1 hypothetical protein 654996 3726656 CHY_0741 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359595.1 654337 D 246194 CDS YP_359596.1 78044601 3727722 655122..655784 1 NC_007503.1 identified by similarity to GB:AAM24365.1; match to protein family HMM PF01205; match to protein family HMM TIGR00257; hypothetical protein 655784 3727722 CHY_0742 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359596.1 655122 D 246194 CDS YP_359597.1 78044018 3727133 655795..656163 1 NC_007503.1 identified by similarity to PIR:E90388; match to protein family HMM PF03674; hypothetical protein 656163 3727133 CHY_0743 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359597.1 655795 D 246194 CDS YP_359598.1 78042802 3726858 656193..656288 1 NC_007503.1 hypothetical protein 656288 3726858 CHY_0744 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359598.1 656193 D 246194 CDS YP_359599.1 78043080 3726397 complement(656278..656418) 1 NC_007503.1 hypothetical protein 656418 3726397 CHY_0745 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359599.1 656278 R 246194 CDS YP_359600.1 78044820 3727945 656949..658043 1 NC_007503.1 catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate; thiamine-phosphate pyrophosphorylase 658043 3727945 CHY_0746 Carboxydothermus hydrogenoformans Z-2901 thiamine-phosphate pyrophosphorylase YP_359600.1 656949 D 246194 CDS YP_359601.1 78043716 3726669 658050..659339 1 NC_007503.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 659339 thiC 3726669 thiC Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiC YP_359601.1 658050 D 246194 CDS YP_359602.1 78042771 3726904 659332..660135 1 NC_007503.1 identified by similarity to SP:P39593; match to protein family HMM PF02110; match to protein family HMM TIGR00694; hydroxyethylthiazole kinase 660135 thiM 3726904 thiM Carboxydothermus hydrogenoformans Z-2901 hydroxyethylthiazole kinase YP_359602.1 659332 D 246194 CDS YP_359603.1 78043238 3728621 660140..661120 1 NC_007503.1 identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 661120 thiL 3728621 thiL Carboxydothermus hydrogenoformans Z-2901 thiamine-monophosphate kinase YP_359603.1 660140 D 246194 CDS YP_359604.1 78044135 3727251 661139..662062 1 NC_007503.1 identified by similarity to SP:P19579; CapA domain-containing protein 662062 3727251 CHY_0750 Carboxydothermus hydrogenoformans Z-2901 CapA domain-containing protein YP_359604.1 661139 D 246194 CDS YP_359605.1 78044208 3727325 complement(662093..663370) 1 NC_007503.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 663370 3727325 CHY_0751 Carboxydothermus hydrogenoformans Z-2901 tryptophan synthase subunit beta YP_359605.1 662093 R 246194 CDS YP_359606.1 78043072 3726389 663558..664082 1 NC_007503.1 identified by match to protein family HMM PF00881; nitroreductase 664082 3726389 CHY_0752 Carboxydothermus hydrogenoformans Z-2901 nitroreductase YP_359606.1 663558 D 246194 CDS YP_359607.1 78044696 3727818 664152..664562 1 NC_007503.1 identified by similarity to SP:Q43247; hypothetical protein 664562 3727818 CHY_0753 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359607.1 664152 D 246194 CDS YP_359608.1 78043790 3726647 664575..665189 1 NC_007503.1 identified by match to protein family HMM TIGR01470; siroheme synthase 665189 3726647 CHY_0754 Carboxydothermus hydrogenoformans Z-2901 siroheme synthase YP_359608.1 664575 D 246194 CDS YP_359609.2 161594525 3726791 665599..666252 1 NC_007503.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 666252 cbiM 3726791 cbiM Carboxydothermus hydrogenoformans Z-2901 cobalt transport protein CbiM YP_359609.2 665599 D 246194 CDS YP_359610.1 78042671 3728497 666252..666572 1 NC_007503.1 periplasmic cobalt binding component of the cobalt transport system; cobalt transport protein CbiN 666572 3728497 CHY_0756 Carboxydothermus hydrogenoformans Z-2901 cobalt transport protein CbiN YP_359610.1 666252 D 246194 CDS YP_359611.1 78044879 3728004 666526..667269 1 NC_007503.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt transport protein 667269 3728004 CHY_0757 Carboxydothermus hydrogenoformans Z-2901 cobalt transport protein YP_359611.1 666526 D 246194 CDS YP_359612.1 78044171 3727287 667254..669170 1 NC_007503.1 identified by similarity to SP:Q05596; match to protein family HMM PF00005; match to protein family HMM PF01888; match to protein family HMM TIGR00312; cobalamin/cobalt ABC transporter ATP-binding protein 669170 3727287 CHY_0758 Carboxydothermus hydrogenoformans Z-2901 cobalamin/cobalt ABC transporter ATP-binding protein YP_359612.1 667254 D 246194 CDS YP_359613.1 78044671 3727793 669152..669763 1 NC_007503.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; precorrin-6Y C5,15-methyltransferase 669763 3727793 CHY_0759 Carboxydothermus hydrogenoformans Z-2901 precorrin-6Y C5,15-methyltransferase YP_359613.1 669152 D 246194 CDS YP_359614.1 78045065 3728191 669750..670325 1 NC_007503.1 identified by match to protein family HMM TIGR02469; precorrin-6Y C5,15-methyltransferase subunit CbiT 670325 cbiT 3728191 cbiT Carboxydothermus hydrogenoformans Z-2901 precorrin-6Y C5,15-methyltransferase subunit CbiT YP_359614.1 669750 D 246194 CDS YP_359615.1 78042761 3726894 670318..670977 1 NC_007503.1 identified by match to protein family HMM PF00590; precorrin-2 C(20)-methyltransferase 670977 3726894 CHY_0761 Carboxydothermus hydrogenoformans Z-2901 precorrin-2 C(20)-methyltransferase YP_359615.1 670318 D 246194 CDS YP_359616.1 78044806 3727931 670980..671735 1 NC_007503.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465; precorrin-4 C(11)-methyltransferase 671735 cobM 3727931 cobM Carboxydothermus hydrogenoformans Z-2901 precorrin-4 C(11)-methyltransferase YP_359616.1 670980 D 246194 CDS YP_359617.1 78044220 3727337 671728..672738 1 NC_007503.1 identified by similarity to SP:Q05631; match to protein family HMM PF01890; cobalamin biosynthesis protein CbiG 672738 cbiG 3727337 cbiG Carboxydothermus hydrogenoformans Z-2901 cobalamin biosynthesis protein CbiG YP_359617.1 671728 D 246194 CDS YP_359618.1 78042730 3726941 672726..673448 1 NC_007503.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR01466; precorrin-3B C(17)-methyltransferase 673448 cobJ 3726941 cobJ Carboxydothermus hydrogenoformans Z-2901 precorrin-3B C(17)-methyltransferase YP_359618.1 672726 D 246194 CDS YP_359619.1 78044761 3727885 673445..674221 1 NC_007503.1 identified by match to protein family HMM PF02571; match to protein family HMM TIGR00715; precorrin-6x reductase 674221 cobK 3727885 cobK Carboxydothermus hydrogenoformans Z-2901 precorrin-6x reductase YP_359619.1 673445 D 246194 CDS YP_359620.1 78042873 3727049 674206..674568 1 NC_007503.1 identified by match to protein family HMM PF01903; cbiX protein 674568 3727049 CHY_0766 Carboxydothermus hydrogenoformans Z-2901 cbiX protein YP_359620.1 674206 D 246194 CDS YP_359621.1 78043271 3728557 674558..675172 1 NC_007503.1 identified by similarity to GP:15826199; match to protein family HMM PF02570; precorrin-8X methylmutase 675172 cobH 3728557 cobH Carboxydothermus hydrogenoformans Z-2901 precorrin-8X methylmutase YP_359621.1 674558 D 246194 CDS YP_359622.1 78044997 3728122 675174..675680 1 NC_007503.1 identified by similarity to SP:P29931; match to protein family HMM PF02283; cobalamin biosynthesis protein CobP 675680 cobP 3728122 cobP Carboxydothermus hydrogenoformans Z-2901 cobalamin biosynthesis protein CobP YP_359622.1 675174 D 246194 CDS YP_359623.1 78043382 3728767 675680..677173 1 NC_007503.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00313; cobyric acid synthase CobQ 677173 cobQ 3728767 cobQ Carboxydothermus hydrogenoformans Z-2901 cobyric acid synthase CobQ YP_359623.1 675680 D 246194 CDS YP_359624.1 78043696 3726259 677175..678134 1 NC_007503.1 identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 678134 cobD 3726259 cobD Carboxydothermus hydrogenoformans Z-2901 cobalamin biosynthesis protein CobD YP_359624.1 677175 D 246194 CDS YP_359625.1 78043061 3726437 678134..679468 1 NC_007503.1 identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 679468 cobB1 3726437 cobB1 Carboxydothermus hydrogenoformans Z-2901 cobyrinic acid a,c-diamide synthase YP_359625.1 678134 D 246194 CDS YP_359626.1 78044196 3727313 679465..680328 1 NC_007503.1 identified by match to protein family HMM PF00288; kinase 680328 3727313 CHY_0772 Carboxydothermus hydrogenoformans Z-2901 kinase YP_359626.1 679465 D 246194 CDS YP_359627.1 78043446 3728909 680321..681427 1 NC_007503.1 identified by similarity to GP:1895094; match to protein family HMM PF00155; cobalamin biosynthesis protein CobD 681427 3728909 CHY_0773 Carboxydothermus hydrogenoformans Z-2901 cobalamin biosynthesis protein CobD YP_359627.1 680321 D 246194 CDS YP_359628.1 78042801 3726857 complement(681514..682749) 1 NC_007503.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISChy1, transposase 682749 3726857 CHY_0774 Carboxydothermus hydrogenoformans Z-2901 ISChy1, transposase YP_359628.1 681514 R 246194 CDS YP_359629.1 78042950 3726812 683113..683586 1 NC_007503.1 identified by similarity to GB:AAM23665.1; hypothetical protein 683586 3726812 CHY_0775 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359629.1 683113 D 246194 CDS YP_359630.1 78043935 3726402 683589..684317 1 NC_007503.1 identified by similarity to GB:AAM23666.1; hypothetical protein 684317 3726402 CHY_0776 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359630.1 683589 D 246194 CDS YP_359631.1 78044437 3727555 684419..685759 1 NC_007503.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766; ISChy5, transposase 685759 3727555 CHY_0777 Carboxydothermus hydrogenoformans Z-2901 ISChy5, transposase YP_359631.1 684419 D 246194 CDS YP_359632.1 78045040 3728166 685897..686670 1 NC_007503.1 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase 686670 cobA 3728166 cobA Carboxydothermus hydrogenoformans Z-2901 uroporphyrin-III C-methyltransferase YP_359632.1 685897 D 246194 CDS YP_359633.1 78044598 3727719 686678..687445 1 NC_007503.1 identified by similarity to SP:P36561; match to protein family HMM PF02654; cobalamin 5'-phosphate synthase 687445 3727719 CHY_0779 Carboxydothermus hydrogenoformans Z-2901 cobalamin 5'-phosphate synthase YP_359633.1 686678 D 246194 CDS YP_359634.1 78043850 3726591 complement(687464..688480) 1 NC_007503.1 identified by similarity to GB:AAF00929.1; match to protein family HMM PF06089; asparaginase 688480 3726591 CHY_0780 Carboxydothermus hydrogenoformans Z-2901 asparaginase YP_359634.1 687464 R 246194 CDS YP_359635.1 78043454 3728838 complement(688545..689174) 1 NC_007503.1 hypothetical protein 689174 3728838 CHY_0781 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359635.1 688545 R 246194 CDS YP_359636.1 78042902 3727040 complement(689258..690376) 1 NC_007503.1 identified by similarity to OMNI:NTL01MM2409; hypothetical protein 690376 3727040 CHY_0782 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359636.1 689258 R 246194 CDS YP_359637.1 78045006 3728131 complement(690670..691527) 1 NC_007503.1 identified by similarity to GB:AAO81530.1; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 691527 3728131 CHY_0783 Carboxydothermus hydrogenoformans Z-2901 phosphate ABC transporter permease YP_359637.1 690670 R 246194 CDS YP_359638.1 78044059 3727175 complement(691524..692393) 1 NC_007503.1 identified by similarity to GB:AAO81531.1; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 692393 3727175 CHY_0784 Carboxydothermus hydrogenoformans Z-2901 phosphate ABC transporter permease YP_359638.1 691524 R 246194 CDS YP_359639.1 78043105 3726326 complement(692426..693289) 1 NC_007503.1 identified by similarity to GB:AAO81481.1; match to protein family HMM PF01547; match to protein family HMM TIGR02136; phosphate ABC transporter substrate-binding protein 693289 3726326 CHY_0785 Carboxydothermus hydrogenoformans Z-2901 phosphate ABC transporter substrate-binding protein YP_359639.1 692426 R 246194 CDS YP_359640.1 78042928 3727027 693526..694194 1 NC_007503.1 identified by similarity to SP:Q45538; match to protein family HMM PF02915; match to protein family HMM PF05067; CotJC protein 694194 cotJC1 3727027 cotJC1 Carboxydothermus hydrogenoformans Z-2901 CotJC protein YP_359640.1 693526 D 246194 CDS YP_359641.2 161594523 3728092 694451..695428 1 NC_007503.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 695428 glpX 3728092 glpX Carboxydothermus hydrogenoformans Z-2901 fructose 1,6-bisphosphatase II YP_359641.2 694451 D 246194 CDS YP_359642.1 78044504 3727623 695585..697426 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM TIGR01199; Fis family transcriptional regulator 697426 3727623 CHY_0788 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_359642.1 695585 D 246194 CDS YP_359643.1 78043924 3726352 697724..699517 1 NC_007503.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde ferredoxin oxidoreductase 699517 aor1 3726352 aor1 Carboxydothermus hydrogenoformans Z-2901 tungsten-containing aldehyde ferredoxin oxidoreductase YP_359643.1 697724 D 246194 CDS YP_359644.1 78043007 3726460 699585..700682 1 NC_007503.1 identified by similarity to SP:Q51741; match to protein family HMM PF04055; tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein 700682 3726460 CHY_0790 Carboxydothermus hydrogenoformans Z-2901 tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein YP_359644.1 699585 D 246194 CDS YP_359645.1 78044096 3727212 700699..700923 1 NC_007503.1 identified by match to protein family HMM PF02597; molybdopterin converting factor subunit 1 700923 moaD 3727212 moaD Carboxydothermus hydrogenoformans Z-2901 molybdopterin converting factor subunit 1 YP_359645.1 700699 D 246194 CDS YP_359646.1 78043166 3728685 701074..701745 1 NC_007503.1 identified by match to protein family HMM PF00899; molybdopterin converting factor subunit 2 701745 moaE 3728685 moaE Carboxydothermus hydrogenoformans Z-2901 molybdopterin converting factor subunit 2 YP_359646.1 701074 D 246194 CDS YP_359647.1 78042637 3727123 702113..705121 1 NC_007503.1 selenoprotein; identified by similarity to SP:P32176; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; match to protein family HMM TIGR01553; formate dehydrogenase-O, major subunit, selenocysteine-containing 705121 fdoG 3727123 fdoG Carboxydothermus hydrogenoformans Z-2901 formate dehydrogenase-O, major subunit, selenocysteine-containing YP_359647.1 702113 D 246194 CDS YP_359648.1 78044396 3727514 705121..705903 1 NC_007503.1 identified by similarity to SP:P32175; match to protein family HMM PF00037; formate dehydrogenase-O, iron-sulfur subunit 705903 fdoH 3727514 fdoH Carboxydothermus hydrogenoformans Z-2901 formate dehydrogenase-O, iron-sulfur subunit YP_359648.1 705121 D 246194 CDS YP_359649.1 78043392 3728854 705896..706591 1 NC_007503.1 identified by similarity to SP:P32174; formate dehydrogenase, cytochrome b556 (fdo) subunit 706591 fdoI 3728854 fdoI Carboxydothermus hydrogenoformans Z-2901 formate dehydrogenase, cytochrome b556 (fdo) subunit YP_359649.1 705896 D 246194 CDS YP_359650.1 78043086 3726364 706649..707383 1 NC_007503.1 identified by similarity to SP:P13024; formate dehydrogenase subunit epsilon 707383 3726364 CHY_0796 Carboxydothermus hydrogenoformans Z-2901 formate dehydrogenase subunit epsilon YP_359650.1 706649 D 246194 CDS YP_359651.1 78043695 3726258 707432..707605 1 NC_007503.1 identified by similarity to PIR:C97146; hypothetical protein 707605 3726258 CHY_0797 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359651.1 707432 D 246194 CDS YP_359652.1 78043077 3726394 707619..708848 1 NC_007503.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 708848 3726394 CHY_0798 Carboxydothermus hydrogenoformans Z-2901 molybdopterin biosynthesis protein MoeA YP_359652.1 707619 D 246194 CDS YP_359653.1 78045151 3728277 708863..710767 1 NC_007503.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 710767 3728277 CHY_0799 Carboxydothermus hydrogenoformans Z-2901 molybdopterin biosynthesis protein MoeA YP_359653.1 708863 D 246194 CDS YP_359654.1 78043212 3728576 710772..711551 1 NC_007503.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 711551 fdhD 3728576 fdhD Carboxydothermus hydrogenoformans Z-2901 formate dehydrogenase accessory protein YP_359654.1 710772 D 246194 CDS YP_359655.1 78044014 3727129 711563..711778 1 NC_007503.1 hypothetical protein 711778 3727129 CHY_0801 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359655.1 711563 D 246194 CDS YP_359656.1 78043321 3728646 711751..712716 1 NC_007503.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein MoaA 712716 moaA 3728646 moaA Carboxydothermus hydrogenoformans Z-2901 molybdenum cofactor biosynthesis protein MoaA YP_359656.1 711751 D 246194 CDS YP_359657.1 78044091 3727207 712721..713194 1 NC_007503.1 identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 713194 moaC 3727207 moaC Carboxydothermus hydrogenoformans Z-2901 molybdenum cofactor biosynthesis protein C YP_359657.1 712721 D 246194 CDS YP_359658.1 78044913 3728038 713197..713634 1 NC_007503.1 identified by similarity to PIR:C97145; match to protein family HMM PF03473; MOSC domain-containing protein 713634 3728038 CHY_0804 Carboxydothermus hydrogenoformans Z-2901 MOSC domain-containing protein YP_359658.1 713197 D 246194 CDS YP_359659.1 78042856 3727071 713627..714118 1 NC_007503.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177; molybdenum cofactor synthesis domain-containing protein 714118 3727071 CHY_0805 Carboxydothermus hydrogenoformans Z-2901 molybdenum cofactor synthesis domain-containing protein YP_359659.1 713627 D 246194 CDS YP_359660.1 78044510 3727629 714494..714778 1 NC_007503.1 identified by similarity to SP:Q07200; match to protein family HMM PF00166; chaperonin, 10 kDa 714778 groES 3727629 groES Carboxydothermus hydrogenoformans Z-2901 chaperonin, 10 kDa YP_359660.1 714494 D 246194 CDS YP_359661.1 78044694 3727816 714805..716427 1 NC_007503.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 716427 groEL 3727816 groEL Carboxydothermus hydrogenoformans Z-2901 molecular chaperone GroEL YP_359661.1 714805 D 246194 CDS YP_359662.1 78043721 3728466 716551..717471 1 NC_007503.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 717471 cysK 3728466 cysK Carboxydothermus hydrogenoformans Z-2901 cysteine synthase A YP_359662.1 716551 D 246194 CDS YP_359663.1 78043483 3728810 717502..717993 1 NC_007503.1 Selenoprotein. identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA-protein-cysteine methyltransferase, selenocysteine-containing 717993 ogt 3728810 ogt Carboxydothermus hydrogenoformans Z-2901 methylated-DNA-protein-cysteine methyltransferase, selenocysteine-containing YP_359663.1 717502 D 246194 CDS YP_359664.1 78043070 3726387 complement(718002..718124) 1 NC_007503.1 hypothetical protein 718124 3726387 CHY_0810 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359664.1 718002 R 246194 CDS YP_359665.1 78043638 3726766 718327..719625 1 NC_007503.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISChy8, transposase 719625 3726766 CHY_0811 Carboxydothermus hydrogenoformans Z-2901 ISChy8, transposase YP_359665.1 718327 D 246194 CDS YP_359666.1 78044444 3727562 719784..720191 1 NC_007503.1 identified by similarity to GB:BAC09437.1; hypothetical protein 720191 3727562 CHY_0812 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359666.1 719784 D 246194 CDS YP_359667.1 78044832 3727957 720296..720754 1 NC_007503.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 720754 3727957 CHY_0813 Carboxydothermus hydrogenoformans Z-2901 MarR family transcriptional regulator YP_359667.1 720296 D 246194 CDS YP_359668.1 78044871 3727996 720756..722357 1 NC_007503.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 722357 3727996 CHY_0814 Carboxydothermus hydrogenoformans Z-2901 EmrB/QacA family drug resistance transporter YP_359668.1 720756 D 246194 CDS YP_359669.1 78042682 3726971 722409..723653 1 NC_007503.1 identified by similarity to SP:P52067; match to protein family HMM PF07690; fosmidomycin resistance protein 723653 3726971 CHY_0815 Carboxydothermus hydrogenoformans Z-2901 fosmidomycin resistance protein YP_359669.1 722409 D 246194 CDS YP_359670.1 78042959 3726821 723700..724458 1 NC_007503.1 identified by similarity to GB:AAO34771.1; match to protein family HMM PF01643; ACP thioesterase 724458 3726821 CHY_0816 Carboxydothermus hydrogenoformans Z-2901 ACP thioesterase YP_359670.1 723700 D 246194 CDS YP_359671.1 78044146 3727262 complement(724509..724637) 1 NC_007503.1 hypothetical protein 724637 3727262 CHY_0817 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359671.1 724509 R 246194 CDS YP_359672.1 78043841 3726582 724538..724786 1 NC_007503.1 hypothetical protein 724786 3726582 CHY_0818 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359672.1 724538 D 246194 CDS YP_359673.1 78043032 3726447 725229..725366 1 NC_007503.1 hypothetical protein 725366 3726447 CHY_0819 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359673.1 725229 D 246194 CDS YP_359674.1 78044976 3728101 725455..726165 1 NC_007503.1 identified by similarity to GB:AAM23684.1; match to protein family HMM PF01694; rhomboid family protein 726165 3728101 CHY_0820 Carboxydothermus hydrogenoformans Z-2901 rhomboid family protein YP_359674.1 725455 D 246194 CDS YP_359675.1 78044842 3727967 726453..726869 1 NC_007503.1 identified by similarity to GP:1848096; match to protein family HMM PF00011; heat shock protein 20 726869 3727967 CHY_0821 Carboxydothermus hydrogenoformans Z-2901 heat shock protein 20 YP_359675.1 726453 D 246194 CDS YP_359676.1 78042643 3726307 727037..727450 1 NC_007503.1 hypothetical protein 727450 3726307 CHY_0822 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359676.1 727037 D 246194 CDS YP_359677.1 78043331 3728656 complement(727624..727803) 1 NC_007503.1 hypothetical protein 727803 3728656 CHY_0823 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359677.1 727624 R 246194 CDS YP_359678.1 78043605 3728816 complement(728148..728324) 1 NC_007503.1 hypothetical protein 728324 3728816 CHY_0825 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359678.1 728148 R 246194 CDS YP_359679.1 78043685 3726248 complement(728159..728281) 1 NC_007503.1 hypothetical protein 728281 3726248 CHY_0824 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359679.1 728159 R 246194 CDS YP_359680.1 78045009 3728134 728565..732362 1 NC_007503.1 identified by similarity to GB:AAM42412.1; hypothetical protein 732362 3728134 CHY_0826 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359680.1 728565 D 246194 CDS YP_359681.1 78044642 3727764 732490..732612 1 NC_007503.1 hypothetical protein 732612 3727764 CHY_0827 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359681.1 732490 D 246194 CDS YP_359682.1 78044169 3727285 733321..733848 1 NC_007503.1 identified by similarity to GB:AAO79448.1; hypothetical protein 733848 3727285 CHY_0829 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359682.1 733321 D 246194 CDS YP_359683.1 78044904 3728029 733923..736367 1 NC_007503.1 identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system subunit M 736367 hsdM 3728029 hsdM Carboxydothermus hydrogenoformans Z-2901 type I restriction-modification system subunit M YP_359683.1 733923 D 246194 CDS YP_359684.1 78043287 3728730 736360..737571 1 NC_007503.1 identified by similarity to SP:P10485; match to protein family HMM PF01420; type I restriction-modification system subunit S 737571 3728730 CHY_0831 Carboxydothermus hydrogenoformans Z-2901 type I restriction-modification system subunit S YP_359684.1 736360 D 246194 CDS YP_359685.1 78044246 3727363 737598..740801 1 NC_007503.1 identified by similarity to GP:2411488; match to protein family HMM PF00270; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 740801 hsdR 3727363 hsdR Carboxydothermus hydrogenoformans Z-2901 type I restriction-modification system, R subunit YP_359685.1 737598 D 246194 CDS YP_359686.1 78045122 3728248 740807..741478 1 NC_007503.1 identified by similarity to GB:AAN53462.1; match to protein family HMM PF01863; hypothetical protein 741478 3728248 CHY_0833 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359686.1 740807 D 246194 CDS YP_359687.1 78042748 3726920 complement(741516..742043) 1 NC_007503.1 identified by similarity to GP:26453803; match to protein family HMM PF07665; hypothetical protein 742043 3726920 CHY_0834 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359687.1 741516 R 246194 CDS YP_359688.1 78043244 3728627 complement(742369..743298) 1 NC_007503.1 hypothetical protein 743298 3728627 CHY_0836 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359688.1 742369 R 246194 CDS YP_359689.1 78045081 3728207 744758..746401 1 NC_007503.1 DNA repair protein RadA 746401 3728207 CHY_0837 Carboxydothermus hydrogenoformans Z-2901 DNA repair protein RadA YP_359689.1 744758 D 246194 CDS YP_359690.1 78045096 3728222 746847..746945 1 NC_007503.1 hypothetical protein 746945 3728222 CHY_0838 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359690.1 746847 D 246194 CDS YP_359691.1 78045123 3728249 747332..747853 1 NC_007503.1 identified by similarity to SP:P11470; hypothetical protein 747853 3728249 CHY_0839 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359691.1 747332 D 246194 CDS YP_359692.1 78043622 3728833 complement(748006..748365) 1 NC_007503.1 lipoprotein 748365 3728833 CHY_0840 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_359692.1 748006 R 246194 CDS YP_359693.1 78042893 3727030 748452..748592 1 NC_007503.1 hypothetical protein 748592 3727030 CHY_0841 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359693.1 748452 D 246194 CDS YP_359694.1 78044770 3727894 complement(748656..748874) 1 NC_007503.1 hypothetical protein 748874 3727894 CHY_0842 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359694.1 748656 R 246194 CDS YP_359695.1 78045063 3728189 complement(748874..749836) 1 NC_007503.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase 749836 3728189 CHY_0843 Carboxydothermus hydrogenoformans Z-2901 phage integrase site specific recombinase YP_359695.1 748874 R 246194 CDS YP_359696.1 78042829 3726846 750198..751850 1 NC_007503.1 identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 751850 fadD2 3726846 fadD2 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_359696.1 750198 D 246194 CDS YP_359697.1 78043556 3726781 751847..752857 1 NC_007503.1 identified by similarity to SP:P11570; match to protein family HMM PF06050; (R)-2-hydroxyglutaryl-CoA dehydratase subunit beta 752857 hgdB 3726781 hgdB Carboxydothermus hydrogenoformans Z-2901 (R)-2-hydroxyglutaryl-CoA dehydratase subunit beta YP_359697.1 751847 D 246194 CDS YP_359698.1 78043965 3726745 752857..754071 1 NC_007503.1 identified by similarity to SP:P11569; match to protein family HMM PF06050; (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha 754071 hgdA 3726745 hgdA Carboxydothermus hydrogenoformans Z-2901 (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha YP_359698.1 752857 D 246194 CDS YP_359699.1 78043944 3726411 754093..754857 1 NC_007503.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241; (R)-2-hydroxyglutaryl-CoA dehydratase activator 754857 hgdC 3726411 hgdC Carboxydothermus hydrogenoformans Z-2901 (R)-2-hydroxyglutaryl-CoA dehydratase activator YP_359699.1 754093 D 246194 CDS YP_359700.1 78044162 3727278 754913..755032 1 NC_007503.1 hypothetical protein 755032 3727278 CHY_0849 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359700.1 754913 D 246194 CDS YP_359701.1 78044321 3727438 755131..756321 1 NC_007503.1 detoxifies nitric oxide using NADH; metallo-beta-lactamase/flavodoxin domain-containing protein 756321 norV 3727438 norV Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase/flavodoxin domain-containing protein YP_359701.1 755131 D 246194 CDS YP_359702.1 78043879 3726502 756549..756992 1 NC_007503.1 identified by similarity to GB:AAK76779.1; match to protein family HMM TIGR01909; redox protein 756992 3726502 CHY_0851 Carboxydothermus hydrogenoformans Z-2901 redox protein YP_359702.1 756549 D 246194 CDS YP_359703.1 78043013 3726466 756994..757440 1 NC_007503.1 identified by match to protein family HMM PF00075; ribonuclease HI 757440 rnhA 3726466 rnhA Carboxydothermus hydrogenoformans Z-2901 ribonuclease HI YP_359703.1 756994 D 246194 CDS YP_359704.1 78044759 3727883 757485..757700 1 NC_007503.1 hypothetical protein 757700 3727883 CHY_0853 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359704.1 757485 D 246194 CDS YP_359705.1 78042805 3726861 757799..758173 1 NC_007503.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; hypothetical protein 758173 3726861 CHY_0854 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359705.1 757799 D 246194 CDS YP_359706.1 78043053 3726429 758324..759310 1 NC_007503.1 identified by match to protein family HMM PF01758; sodium/bile acid symporter family protein 759310 3726429 CHY_0855 Carboxydothermus hydrogenoformans Z-2901 sodium/bile acid symporter family protein YP_359706.1 758324 D 246194 CDS YP_359707.1 78044964 3728089 759400..760692 1 NC_007503.1 identified by match to protein family HMM PF01957; nodulation efficiency family protein 760692 3728089 CHY_0856 Carboxydothermus hydrogenoformans Z-2901 nodulation efficiency family protein YP_359707.1 759400 D 246194 CDS YP_359708.1 78044579 3727699 760717..761496 1 NC_007503.1 identified by match to protein family HMM PF01145; SPFH domain-containing protein 761496 3727699 CHY_0857 Carboxydothermus hydrogenoformans Z-2901 SPFH domain-containing protein YP_359708.1 760717 D 246194 CDS YP_359709.1 78042907 3727045 complement(761557..761973) 1 NC_007503.1 hypothetical protein 761973 3727045 CHY_0858 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359709.1 761557 R 246194 CDS YP_359710.1 78043827 3728437 762097..762456 1 NC_007503.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 762456 3728437 CHY_0859 Carboxydothermus hydrogenoformans Z-2901 ArsR family transcriptional regulator YP_359710.1 762097 D 246194 CDS YP_359711.1 78044655 3727777 762469..764529 1 NC_007503.1 Selenoprotein. identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01525; cation transporter E1-E2 family ATPase 764529 3727777 CHY_0860 Carboxydothermus hydrogenoformans Z-2901 cation transporter E1-E2 family ATPase YP_359711.1 762469 D 246194 CDS YP_359712.1 78044657 3727779 complement(764507..765106) 1 NC_007503.1 identified by similarity to GB:AAM42031.1; match to protein family HMM PF01551; M24/M37 family peptidase 765106 3727779 CHY_0861 Carboxydothermus hydrogenoformans Z-2901 M24/M37 family peptidase YP_359712.1 764507 R 246194 CDS YP_359713.1 78042920 3727019 765220..765651 1 NC_007503.1 identified by match to protein family HMM PF02566; osmC family protein 765651 3727019 CHY_0862 Carboxydothermus hydrogenoformans Z-2901 osmC family protein YP_359713.1 765220 D 246194 CDS YP_359714.1 78043479 3728806 complement(765676..766407) 1 NC_007503.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; sec-independent protein translocase TatC 766407 3728806 CHY_0863 Carboxydothermus hydrogenoformans Z-2901 sec-independent protein translocase TatC YP_359714.1 765676 R 246194 CDS YP_359715.1 78044415 3727533 766579..767646 1 NC_007503.1 identified by similarity to PIR:C87286; match to protein family HMM PF01979; amidohydrolase 767646 3727533 CHY_0864 Carboxydothermus hydrogenoformans Z-2901 amidohydrolase YP_359715.1 766579 D 246194 CDS YP_359716.1 78045017 3728142 767687..767887 1 NC_007503.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 767887 3728142 CHY_0865 Carboxydothermus hydrogenoformans Z-2901 twin arginine-targeting protein translocase YP_359716.1 767687 D 246194 CDS YP_359717.1 78043234 3728598 767888..768481 1 NC_007503.1 identified by similarity to SP:P32173; molybdopterin-guanine dinucleotide biosynthesis protein MobA 768481 mobA 3728598 mobA Carboxydothermus hydrogenoformans Z-2901 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_359717.1 767888 D 246194 CDS YP_359718.1 78044011 3727126 768486..769745 1 NC_007503.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 769745 3727126 CHY_0867 Carboxydothermus hydrogenoformans Z-2901 molybdopterin biosynthesis protein MoeA YP_359718.1 768486 D 246194 CDS YP_359719.1 78044599 3727720 769711..770202 1 NC_007503.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 770202 mobB 3727720 mobB Carboxydothermus hydrogenoformans Z-2901 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_359719.1 769711 D 246194 CDS YP_359720.1 78043320 3728645 770199..771248 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 771248 3728645 CHY_0869 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_359720.1 770199 D 246194 CDS YP_359721.1 78045083 3728209 771254..771442 1 NC_007503.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 771442 3728209 CHY_0870 Carboxydothermus hydrogenoformans Z-2901 twin arginine-targeting protein translocase YP_359721.1 771254 D 246194 CDS YP_359722.1 78044400 3727518 complement(771536..772657) 1 NC_007503.1 identified by similarity to GB:BAC50913.1; match to protein family HMM PF01061; ABC transporter permease 772657 3727518 CHY_0871 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_359722.1 771536 R 246194 CDS YP_359723.1 78043982 3726217 complement(772654..773439) 1 NC_007503.1 identified by similarity to PIR:H97301; match to protein family HMM PF00005; ABC transporter ATP-binding protein 773439 3726217 CHY_0872 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_359723.1 772654 R 246194 CDS YP_359724.1 78043593 3728746 complement(773453..774202) 1 NC_007503.1 identified by match to protein family HMM PF00529; lipoprotein 774202 3728746 CHY_0873 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_359724.1 773453 R 246194 CDS YP_359725.1 78043792 3726649 774281..774391 1 NC_007503.1 hypothetical protein 774391 3726649 CHY_0874 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359725.1 774281 D 246194 CDS YP_359726.1 78044689 3727811 775237..776772 1 NC_007503.1 identified by similarity to PIR:AB1073; hypothetical protein 776772 3727811 CHY_0876 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359726.1 775237 D 246194 CDS YP_359727.1 78044002 3726237 776753..777598 1 NC_007503.1 identified by similarity to SP:Q46267; match to protein family HMM PF00037; match to protein family HMM PF04055; pyruvate formate-lyase activating enzyme 777598 3726237 CHY_0877 Carboxydothermus hydrogenoformans Z-2901 pyruvate formate-lyase activating enzyme YP_359727.1 776753 D 246194 CDS YP_359728.1 78044686 3727808 complement(777577..777717) 1 NC_007503.1 hypothetical protein 777717 3727808 CHY_0878 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359728.1 777577 R 246194 CDS YP_359729.1 78043876 3726499 777833..778693 1 NC_007503.1 hypothetical protein 778693 3726499 CHY_0879 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359729.1 777833 D 246194 CDS YP_359730.1 78043169 3728688 778979..780985 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; response regulator/sensory box protein/GGDEF domain-containing protein 780985 3728688 CHY_0880 Carboxydothermus hydrogenoformans Z-2901 response regulator/sensory box protein/GGDEF domain-containing protein YP_359730.1 778979 D 246194 CDS YP_359731.1 78044800 3727925 781228..782304 1 NC_007503.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966; HD domain-containing protein 782304 3727925 CHY_0881 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_359731.1 781228 D 246194 CDS YP_359732.1 78044194 3727311 782330..782557 1 NC_007503.1 identified by similarity to OMNI:NTL01MM1209; hypothetical protein 782557 3727311 CHY_0882 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359732.1 782330 D 246194 CDS YP_359733.1 78043261 3728547 782712..784022 1 NC_007503.1 identified by similarity to PIR:B97005; match to protein family HMM PF01966; HD domain-containing protein 784022 3728547 CHY_0883 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_359733.1 782712 D 246194 CDS YP_359734.1 78042732 3726943 784142..784438 1 NC_007503.1 hypothetical protein 784438 3726943 CHY_0884 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359734.1 784142 D 246194 CDS YP_359735.1 78045162 3728288 784441..785331 1 NC_007503.1 identified by similarity to GB:AAN69428.1; hypothetical protein 785331 3728288 CHY_0885 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359735.1 784441 D 246194 CDS YP_359736.1 78044580 3727700 785982..786797 1 NC_007503.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 786797 3727700 CHY_0886 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359736.1 785982 D 246194 CDS YP_359737.1 78043666 3726697 786844..787032 1 NC_007503.1 identified by similarity to SP:Q01468; match to protein family HMM PF01361; 4-oxalocrotonate tautomerase 787032 3726697 CHY_0887 Carboxydothermus hydrogenoformans Z-2901 4-oxalocrotonate tautomerase YP_359737.1 786844 D 246194 CDS YP_359738.1 78043635 3726763 787069..787233 1 NC_007503.1 hypothetical protein 787233 3726763 CHY_0888 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359738.1 787069 D 246194 CDS YP_359739.1 78042952 3726814 787299..788276 1 NC_007503.1 identified by similarity to SP:P53557; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 788276 bioB 3726814 bioB Carboxydothermus hydrogenoformans Z-2901 biotin synthase YP_359739.1 787299 D 246194 CDS YP_359740.1 78043794 3726651 788399..789325 1 NC_007503.1 identified by match to protein family HMM PF00561; alpha/beta hydrolase 789325 3726651 CHY_0890 Carboxydothermus hydrogenoformans Z-2901 alpha/beta hydrolase YP_359740.1 788399 D 246194 CDS YP_359741.1 78043005 3726497 complement(789385..789558) 1 NC_007503.1 identified by similarity to GB:AAP25523.1; hypothetical protein 789558 3726497 CHY_0891 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359741.1 789385 R 246194 CDS YP_359742.1 78043528 3726714 789719..790396 1 NC_007503.1 identified by similarity to GB:AAM24969.1; hypothetical protein 790396 3726714 CHY_0892 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359742.1 789719 D 246194 CDS YP_359743.1 78044878 3728003 790452..790598 1 NC_007503.1 hypothetical protein 790598 3728003 CHY_0893 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359743.1 790452 D 246194 CDS YP_359744.1 78044184 3727300 790618..791556 1 NC_007503.1 identified by match to protein family HMM PF01734; phospholipase 791556 3727300 CHY_0894 Carboxydothermus hydrogenoformans Z-2901 phospholipase YP_359744.1 790618 D 246194 CDS YP_359745.1 78043029 3726444 791704..793059 1 NC_007503.1 identified by similarity to GB:AAO34910.1; match to protein family HMM PF04055; radical SAM domain-containing protein 793059 3726444 CHY_0895 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359745.1 791704 D 246194 CDS YP_359746.1 78045087 3728213 793303..793617 1 NC_007503.1 identified by similarity to OMNI:NTL01BH2712; hypothetical protein 793617 3728213 CHY_0896 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359746.1 793303 D 246194 CDS YP_359747.1 78043655 3728457 793865..794137 1 NC_007503.1 hypothetical protein 794137 3728457 CHY_0898 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359747.1 793865 D 246194 CDS YP_359748.1 78045115 3728241 794112..794738 1 NC_007503.1 hypothetical protein 794738 3728241 CHY_0899 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359748.1 794112 D 246194 CDS YP_359749.1 78044743 3727866 794756..795724 1 NC_007503.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01188; daunorubicin resistance ABC transporter ATP-binding protein 795724 3727866 CHY_0900 Carboxydothermus hydrogenoformans Z-2901 daunorubicin resistance ABC transporter ATP-binding protein YP_359749.1 794756 D 246194 CDS YP_359750.1 78044713 3727835 795724..796464 1 NC_007503.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR01247; daunorubicin resistance ABC transporter permease 796464 3727835 CHY_0901 Carboxydothermus hydrogenoformans Z-2901 daunorubicin resistance ABC transporter permease YP_359750.1 795724 D 246194 CDS YP_359751.1 78044480 3727599 796496..796906 1 NC_007503.1 hypothetical protein 796906 3727599 CHY_0902 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359751.1 796496 D 246194 CDS YP_359752.1 78043108 3726329 796976..797926 1 NC_007503.1 identified by similarity to GB:AAD50370.1; match to protein family HMM PF04055; match to protein family HMM TIGR01212; radical SAM family protein 797926 3726329 CHY_0903 Carboxydothermus hydrogenoformans Z-2901 radical SAM family protein YP_359752.1 796976 D 246194 CDS YP_359753.1 78043913 3726536 797943..798977 1 NC_007503.1 identified by similarity to SP:P75823; match to protein family HMM PF00155; match to protein family HMM PF01212; low-specificity L-threonine aldolase 798977 ltaE 3726536 ltaE Carboxydothermus hydrogenoformans Z-2901 low-specificity L-threonine aldolase YP_359753.1 797943 D 246194 CDS YP_359754.1 78044291 3727408 798974..800653 1 NC_007503.1 identified by similarity to GB:AAM23351.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 800653 3727408 CHY_0905 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359754.1 798974 D 246194 CDS YP_359755.1 78042876 3727052 800730..801647 1 NC_007503.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 801647 trxB1 3727052 trxB1 Carboxydothermus hydrogenoformans Z-2901 thioredoxin-disulfide reductase YP_359755.1 800730 D 246194 CDS YP_359756.1 78045193 3728319 801650..802033 1 NC_007503.1 identified by similarity to PIR:H97011; match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 802033 3728319 CHY_0907 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359756.1 801650 D 246194 CDS YP_359757.1 78043471 3728797 802272..802475 1 NC_007503.1 hypothetical protein 802475 3728797 CHY_0908 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359757.1 802272 D 246194 CDS YP_359758.1 78044083 3727199 802541..803881 1 NC_007503.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766; ISChy5, transposase 803881 3727199 CHY_0909 Carboxydothermus hydrogenoformans Z-2901 ISChy5, transposase YP_359758.1 802541 D 246194 CDS YP_359759.1 78043115 3726336 804004..804402 1 NC_007503.1 identified by match to protein family HMM PF00486; transcriptional regulator, truncation 804402 3726336 CHY_0910 Carboxydothermus hydrogenoformans Z-2901 transcriptional regulator, truncation YP_359759.1 804004 D 246194 CDS YP_359760.1 78044725 3727848 804481..804924 1 NC_007503.1 hypothetical protein 804924 3727848 CHY_0911 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359760.1 804481 D 246194 CDS YP_359761.1 78043370 3728891 805084..806205 1 NC_007503.1 identified by similarity to SP:P25126; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 806205 sucC 3728891 sucC Carboxydothermus hydrogenoformans Z-2901 succinyl-CoA synthetase subunit beta YP_359761.1 805084 D 246194 CDS YP_359762.1 78042669 3728495 806205..807074 1 NC_007503.1 identified by similarity to SP:P80865; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 807074 sucD 3728495 sucD Carboxydothermus hydrogenoformans Z-2901 succinyl-CoA synthetase subunit alpha YP_359762.1 806205 D 246194 CDS YP_359763.1 78043708 3726660 809085..809495 1 NC_007503.1 identified by similarity to GB:AAK52053.1; match to protein family HMM PF00903; glyoxalase 809495 3726660 CHY_0916 Carboxydothermus hydrogenoformans Z-2901 glyoxalase YP_359763.1 809085 D 246194 CDS YP_359764.1 78042975 3726544 809485..811026 1 NC_007503.1 identified by similarity to PIR:T42208; match to protein family HMM PF01039; propionyl-CoA carboxylase subunit beta 811026 pccB 3726544 pccB Carboxydothermus hydrogenoformans Z-2901 propionyl-CoA carboxylase subunit beta YP_359764.1 809485 D 246194 CDS YP_359765.1 78044884 3728009 811050..812603 1 NC_007503.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 812603 accC1 3728009 accC1 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA carboxylase, biotin carboxylase YP_359765.1 811050 D 246194 CDS YP_359766.1 78043991 3726226 812605..812994 1 NC_007503.1 identified by similarity to GB:AAA03702.1; match to protein family HMM PF00364; biotin carboxyl carrier protein 812994 3726226 CHY_0919 Carboxydothermus hydrogenoformans Z-2901 biotin carboxyl carrier protein YP_359766.1 812605 D 246194 CDS YP_359767.1 78042651 3726315 813096..813776 1 NC_007503.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 813776 3726315 CHY_0920 Carboxydothermus hydrogenoformans Z-2901 metal-dependent hydrolase YP_359767.1 813096 D 246194 CDS YP_359768.1 78043017 3726470 813824..814465 1 NC_007503.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 814465 psd 3726470 psd Carboxydothermus hydrogenoformans Z-2901 phosphatidylserine decarboxylase YP_359768.1 813824 D 246194 CDS YP_359769.1 78043329 3728654 814462..814974 1 NC_007503.1 identified by similarity to SP:P39823; match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 814974 pssA 3728654 pssA Carboxydothermus hydrogenoformans Z-2901 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_359769.1 814462 D 246194 CDS YP_359770.1 78043182 3728701 815031..815123 1 NC_007503.1 hypothetical protein 815123 3728701 CHY_0923 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359770.1 815031 D 246194 CDS YP_359771.1 78043755 3726281 complement(815116..815979) 1 NC_007503.1 identified by match to protein family HMM PF00165; AraC family transcriptional regulator 815979 3726281 CHY_0924 Carboxydothermus hydrogenoformans Z-2901 AraC family transcriptional regulator YP_359771.1 815116 R 246194 CDS YP_359772.1 78043360 3728881 816099..817250 1 NC_007503.1 identified by similarity to PIR:A25978; match to protein family HMM PF00465; lactaldehyde reductase 817250 3728881 CHY_0925 Carboxydothermus hydrogenoformans Z-2901 lactaldehyde reductase YP_359772.1 816099 D 246194 CDS YP_359773.1 78044153 3727269 817369..817512 1 NC_007503.1 hypothetical protein 817512 3727269 CHY_0926 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359773.1 817369 D 246194 CDS YP_359774.1 78042623 3727109 817509..818096 1 NC_007503.1 heterodisulfide reductase subunit C 818096 3727109 CHY_0927 Carboxydothermus hydrogenoformans Z-2901 heterodisulfide reductase subunit C YP_359774.1 817509 D 246194 CDS YP_359775.1 78043334 3728523 818150..819490 1 NC_007503.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766; ISChy5, transposase 819490 3728523 CHY_0928 Carboxydothermus hydrogenoformans Z-2901 ISChy5, transposase YP_359775.1 818150 D 246194 CDS YP_359776.1 78044470 3727589 819645..820508 1 NC_007503.1 identified by similarity to GP:3378542; match to protein family HMM PF02754; succinate dehydrogenase subunit C 820508 3727589 CHY_0929 Carboxydothermus hydrogenoformans Z-2901 succinate dehydrogenase subunit C YP_359776.1 819645 D 246194 CDS YP_359777.1 78044755 3727879 820505..822487 1 NC_007503.1 Selenoprotein. identified by similarity to GP:728612; match to protein family HMM PF00037; match to protein family HMM PF07992; heterodisulfide reductase subunit A 822487 3727879 CHY_0930 Carboxydothermus hydrogenoformans Z-2901 heterodisulfide reductase subunit A YP_359777.1 820505 D 246194 CDS YP_359778.1 78043978 3726213 822478..822909 1 NC_007503.1 Selenoprotein. identified by similarity to GP:10802613; match to protein family HMM PF02662; hydrogenase, methyl-violgen-reducing type subunit delta 822909 3726213 CHY_0931 Carboxydothermus hydrogenoformans Z-2901 hydrogenase, methyl-violgen-reducing type subunit delta YP_359778.1 822478 D 246194 CDS YP_359779.1 78045211 3728337 822903..823856 1 NC_007503.1 identified by similarity to SP:P06130; match to protein family HMM PF00037; dehydrogenase subunit beta 823856 3728337 CHY_0932 Carboxydothermus hydrogenoformans Z-2901 dehydrogenase subunit beta YP_359779.1 822903 D 246194 CDS YP_359780.1 78043358 3728879 823881..824909 1 NC_007503.1 identified by similarity to SP:P26474; match to protein family HMM PF00037; anaerobic sulfite reductase subunit A 824909 3728879 CHY_0933 Carboxydothermus hydrogenoformans Z-2901 anaerobic sulfite reductase subunit A YP_359780.1 823881 D 246194 CDS YP_359781.1 78043750 3726276 824909..825751 1 NC_007503.1 identified by similarity to GP:2746738; match to protein family HMM PF00175; match to protein family HMM PF00970; hydrogenase subunit gamma 825751 3726276 CHY_0934 Carboxydothermus hydrogenoformans Z-2901 hydrogenase subunit gamma YP_359781.1 824909 D 246194 CDS YP_359782.1 78042982 3726552 825901..827121 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 827121 3726552 CHY_0935 Carboxydothermus hydrogenoformans Z-2901 sensory box histidine kinase YP_359782.1 825901 D 246194 CDS YP_359783.1 78045228 3728354 complement(827077..827436) 1 NC_007503.1 hypothetical protein 827436 3728354 CHY_0936 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359783.1 827077 R 246194 CDS YP_359784.1 78044120 3727236 827516..828112 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 828112 3727236 CHY_0937 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359784.1 827516 D 246194 CDS YP_359785.1 78043699 3726262 828203..828469 1 NC_007503.1 identified by similarity to PIR:G70041; match to protein family HMM PF02583; hypothetical protein 828469 3726262 CHY_0938 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359785.1 828203 D 246194 CDS YP_359786.1 78042694 3726983 828483..828734 1 NC_007503.1 identified by similarity to PIR:G90060; match to protein family HMM PF00403; heavy metal-binding domain-containing protein 828734 3726983 CHY_0939 Carboxydothermus hydrogenoformans Z-2901 heavy metal-binding domain-containing protein YP_359786.1 828483 D 246194 CDS YP_359787.1 78044857 3727982 828843..831359 1 NC_007503.1 identified by similarity to SP:O32220; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 831359 3727982 CHY_0940 Carboxydothermus hydrogenoformans Z-2901 copper-translocating P-type ATPase YP_359787.1 828843 D 246194 CDS YP_359788.1 78043162 3728681 831360..831566 1 NC_007503.1 hypothetical protein 831566 3728681 CHY_0941 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359788.1 831360 D 246194 CDS YP_359789.1 78044923 3728048 complement(831619..833034) 1 NC_007503.1 hypothetical protein 833034 3728048 CHY_0942 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359789.1 831619 R 246194 CDS YP_359790.1 78044511 3727630 833203..834102 1 NC_007503.1 identified by similarity to PIR:C83656; hypothetical protein 834102 3727630 CHY_0943 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359790.1 833203 D 246194 CDS YP_359791.1 78043151 3728514 834119..835969 1 NC_007503.1 identified by similarity to PIR:D83656; hypothetical protein 835969 3728514 CHY_0944 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359791.1 834119 D 246194 CDS YP_359792.1 78045109 3728235 835975..836970 1 NC_007503.1 identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase 836970 3728235 CHY_0945 Carboxydothermus hydrogenoformans Z-2901 Ser/Thr protein phosphatase YP_359792.1 835975 D 246194 CDS YP_359793.1 78044702 3727824 836960..838399 1 NC_007503.1 identified by similarity to PIR:E83947; hypothetical protein 838399 3727824 CHY_0946 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359793.1 836960 D 246194 CDS YP_359794.1 78043945 3726412 838396..838659 1 NC_007503.1 identified by similarity to PIR:D83947; hypothetical protein 838659 3726412 CHY_0947 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359794.1 838396 D 246194 CDS YP_359795.1 78042618 3726987 838656..839309 1 NC_007503.1 identified by similarity to PIR:C83947; hypothetical protein 839309 3726987 CHY_0948 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359795.1 838656 D 246194 CDS YP_359796.1 78044859 3727984 complement(839298..840227) 1 NC_007503.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 840227 3727984 CHY_0949 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_359796.1 839298 R 246194 CDS YP_359797.1 78043740 3726266 840219..840377 1 NC_007503.1 hypothetical protein 840377 3726266 CHY_0950 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359797.1 840219 D 246194 CDS YP_359798.1 78044205 3727322 840377..840739 1 NC_007503.1 identified by match to protein family HMM PF01242; 6-pyruvoyl tetrahydrobiopterin synthase 840739 3727322 CHY_0951 Carboxydothermus hydrogenoformans Z-2901 6-pyruvoyl tetrahydrobiopterin synthase YP_359798.1 840377 D 246194 CDS YP_359799.1 78044764 3727888 840744..841391 1 NC_007503.1 identified by similarity to GB:AAM07545.1; match to protein family HMM PF06508; match to protein family HMM TIGR00364; exoenzyme S synthesis protein B 841391 3727888 CHY_0952 Carboxydothermus hydrogenoformans Z-2901 exoenzyme S synthesis protein B YP_359799.1 840744 D 246194 CDS YP_359800.1 78043062 3726438 841392..841949 1 NC_007503.1 identified by similarity to OMNI:NTL01PA0203; match to protein family HMM PF04017; hypothetical protein 841949 3726438 CHY_0953 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359800.1 841392 D 246194 CDS YP_359801.1 78043751 3726277 841977..842693 1 NC_007503.1 identified by similarity to GB:AAM02031.1; match to protein family HMM PF04055; radical SAM domain-containing protein 842693 3726277 CHY_0954 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_359801.1 841977 D 246194 CDS YP_359802.1 78045076 3728202 842712..843290 1 NC_007503.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 843290 folE 3728202 folE Carboxydothermus hydrogenoformans Z-2901 GTP cyclohydrolase I YP_359802.1 842712 D 246194 CDS YP_359803.1 78043012 3726465 843311..843496 1 NC_007503.1 identified by similarity to PIR:E83861; hypothetical protein 843496 3726465 CHY_0956 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359803.1 843311 D 246194 CDS YP_359804.1 78043899 3726522 843506..844300 1 NC_007503.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 844300 surE 3726522 surE Carboxydothermus hydrogenoformans Z-2901 stationary phase survival protein SurE YP_359804.1 843506 D 246194 CDS YP_359805.1 78044462 3727581 complement(844274..844510) 1 NC_007503.1 identified by similarity to SP:P37549; small acid-soluble spore protein 844510 3727581 CHY_0958 Carboxydothermus hydrogenoformans Z-2901 small acid-soluble spore protein YP_359805.1 844274 R 246194 CDS YP_359806.1 78044029 3727144 844642..847536 1 NC_007503.1 identified by similarity to SP:O34623; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 847536 dnaE1 3727144 dnaE1 Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit alpha YP_359806.1 844642 D 246194 CDS YP_359807.1 78043539 3726725 complement(847526..849025) 1 NC_007503.1 identified by similarity to SP:Q00758; match to protein family HMM PF01943; stage V sporulation protein B 849025 spoVB 3726725 spoVB Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein B YP_359807.1 847526 R 246194 CDS YP_359808.1 78044525 3727644 849185..851203 1 NC_007503.1 identified by similarity to SP:P80868; match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM TIGR00231; match to protein family HMM TIGR00484; translation elongation factor G 851203 fusA1 3727644 fusA1 Carboxydothermus hydrogenoformans Z-2901 translation elongation factor G YP_359808.1 849185 D 246194 CDS YP_359809.1 78045015 3728140 851535..852653 1 NC_007503.1 identified by similarity to PIR:G96933; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 852653 3728140 CHY_0962 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_359809.1 851535 D 246194 CDS YP_359810.1 78043109 3726330 852734..853537 1 NC_007503.1 identified by similarity to SP:P28611; match to protein family HMM PF01618; chemotaxis protein MotA 853537 motA 3726330 motA Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein MotA YP_359810.1 852734 D 246194 CDS YP_359811.1 78043824 3728434 853518..854318 1 NC_007503.1 identified by similarity to SP:P28612; match to protein family HMM PF00691; flagellar motor protein MotB 854318 3728434 CHY_0964 Carboxydothermus hydrogenoformans Z-2901 flagellar motor protein MotB YP_359811.1 853518 D 246194 CDS YP_359812.1 78043972 3726207 854332..855900 1 NC_007503.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 855900 3726207 CHY_0965 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359812.1 854332 D 246194 CDS YP_359813.1 78044727 3727850 855924..856394 1 NC_007503.1 identified by similarity to SP:P06110; match to protein family HMM PF01584; chemotaxis protein CheW 856394 cheW1 3727850 cheW1 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheW YP_359813.1 855924 D 246194 CDS YP_359814.1 78042810 3726866 856412..858508 1 NC_007503.1 identified by similarity to SP:P29072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194; chemotaxis protein CheA 858508 cheA1 3726866 cheA1 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheA YP_359814.1 856412 D 246194 CDS YP_359815.1 78043438 3728901 858495..859517 1 NC_007503.1 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 859517 cheB1 3728901 cheB1 Carboxydothermus hydrogenoformans Z-2901 protein-glutamate methylesterase CheB YP_359815.1 858495 D 246194 CDS YP_359816.1 78044082 3727198 859576..859845 1 NC_007503.1 negative regulator of flagellin synthesis FlgM 859845 flgM 3727198 flgM Carboxydothermus hydrogenoformans Z-2901 negative regulator of flagellin synthesis FlgM YP_359816.1 859576 D 246194 CDS YP_359817.1 78044636 3727757 859846..860220 1 NC_007503.1 hypothetical protein 860220 3727757 CHY_0970 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359817.1 859846 D 246194 CDS YP_359818.1 78044505 3727624 860232..861653 1 NC_007503.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 861653 flgK 3727624 flgK Carboxydothermus hydrogenoformans Z-2901 flagellar hook-associated protein FlgK YP_359818.1 860232 D 246194 CDS YP_359819.1 78045209 3728335 861668..862531 1 NC_007503.1 identified by similarity to SP:P96501; match to protein family HMM PF00669; match to protein family HMM TIGR02550; flagellar hook-associated protein 3 862531 flgL 3728335 flgL Carboxydothermus hydrogenoformans Z-2901 flagellar hook-associated protein 3 YP_359819.1 861668 D 246194 CDS YP_359820.1 78042940 3727000 862553..862852 1 NC_007503.1 hypothetical protein 862852 3727000 CHY_0973 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359820.1 862553 D 246194 CDS YP_359821.1 78042773 3726906 862866..863330 1 NC_007503.1 identified by match to protein family HMM PF02623; hypothetical protein 863330 3726906 CHY_0974 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359821.1 862866 D 246194 CDS YP_359822.1 78043288 3728731 863314..863532 1 NC_007503.1 identified by match to protein family HMM PF02599; match to protein family HMM TIGR00202; carbon storage regulator 863532 csrA 3728731 csrA Carboxydothermus hydrogenoformans Z-2901 carbon storage regulator YP_359822.1 863314 D 246194 CDS YP_359823.1 78044259 3727376 863545..864609 1 NC_007503.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01208; glucose-1-phosphate thymidylyltransferase 864609 3727376 CHY_0976 Carboxydothermus hydrogenoformans Z-2901 glucose-1-phosphate thymidylyltransferase YP_359823.1 863545 D 246194 CDS YP_359824.1 78043500 3726607 864609..865085 1 NC_007503.1 dTDP-4-dehydrorhamnose 3,5-epimerase 865085 rfbC 3726607 rfbC Carboxydothermus hydrogenoformans Z-2901 dTDP-4-dehydrorhamnose 3,5-epimerase YP_359824.1 864609 D 246194 CDS YP_359825.1 78044837 3727962 865124..865975 1 NC_007503.1 identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 865975 rfbD 3727962 rfbD Carboxydothermus hydrogenoformans Z-2901 dTDP-4-dehydrorhamnose reductase YP_359825.1 865124 D 246194 CDS YP_359826.1 78043771 3726804 866015..866944 1 NC_007503.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase 866944 rfbB 3726804 rfbB Carboxydothermus hydrogenoformans Z-2901 dTDP-glucose 4,6-dehydratase YP_359826.1 866015 D 246194 CDS YP_359827.1 78043710 3726662 867015..869516 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 869516 3726662 CHY_0980 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359827.1 867015 D 246194 CDS YP_359828.1 78044274 3727391 869641..870468 1 NC_007503.1 identified by similarity to SP:Q05203; match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin 870468 hag 3727391 hag Carboxydothermus hydrogenoformans Z-2901 flagellin YP_359828.1 869641 D 246194 CDS YP_359829.1 78045132 3728258 870544..871638 1 NC_007503.1 identified by match to protein family HMM PF00515; match to protein family HMM PF00535; match to protein family HMM PF07719; glycosyl transferase family protein 871638 3728258 CHY_0982 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359829.1 870544 D 246194 CDS YP_359830.1 78044592 3727713 871663..872541 1 NC_007503.1 identified by similarity to GB:AAM23781.1; hypothetical protein 872541 3727713 CHY_0983 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359830.1 871663 D 246194 CDS YP_359831.1 78045089 3728215 872560..872940 1 NC_007503.1 identified by match to protein family HMM PF03646; flagellar protein FlaG 872940 3728215 CHY_0984 Carboxydothermus hydrogenoformans Z-2901 flagellar protein FlaG YP_359831.1 872560 D 246194 CDS YP_359832.1 78042782 3726877 872953..874383 1 NC_007503.1 identified by similarity to SP:P24216; match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196; flagellar hook-associated protein 2 874383 fliD 3726877 fliD Carboxydothermus hydrogenoformans Z-2901 flagellar hook-associated protein 2 YP_359832.1 872953 D 246194 CDS YP_359833.1 78045039 3728164 874400..874777 1 NC_007503.1 identified by similarity to SP:P39739; match to protein family HMM PF02561; match to protein family HMM TIGR00208; flagellar protein FliS 874777 fliS 3728164 fliS Carboxydothermus hydrogenoformans Z-2901 flagellar protein FliS YP_359833.1 874400 D 246194 CDS YP_359834.1 78044801 3727926 874787..875113 1 NC_007503.1 hypothetical protein 875113 3727926 CHY_0987 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359834.1 874787 D 246194 CDS YP_359835.1 78042908 3727046 875140..875481 1 NC_007503.1 identified by similarity to PIR:G84101; flagellar protein 875481 3727046 CHY_0988 Carboxydothermus hydrogenoformans Z-2901 flagellar protein YP_359835.1 875140 D 246194 CDS YP_359836.1 78044102 3727218 875510..875713 1 NC_007503.1 hypothetical protein 875713 3727218 CHY_0989 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359836.1 875510 D 246194 CDS YP_359837.1 78043872 3726691 875816..876226 1 NC_007503.1 identified by similarity to SP:P24500; match to protein family HMM TIGR01396; flagellar basal-body rod protein FlgB 876226 flgB 3726691 flgB Carboxydothermus hydrogenoformans Z-2901 flagellar basal-body rod protein FlgB YP_359837.1 875816 D 246194 CDS YP_359838.1 78042758 3726891 876233..876649 1 NC_007503.1 identified by similarity to SP:P75935; match to protein family HMM PF06429; match to protein family HMM TIGR01395; flagellar basal body rod protein FlgC 876649 flgC 3726891 flgC Carboxydothermus hydrogenoformans Z-2901 flagellar basal body rod protein FlgC YP_359838.1 876233 D 246194 CDS YP_359839.1 78044773 3727897 876661..876948 1 NC_007503.1 identified by similarity to SP:P24502; match to protein family HMM PF02049; match to protein family HMM TIGR00205; flagellar hook-basal body complex protein FliE 876948 fliE 3727897 fliE Carboxydothermus hydrogenoformans Z-2901 flagellar hook-basal body complex protein FliE YP_359839.1 876661 D 246194 CDS YP_359840.1 78045011 3728136 876975..878561 1 NC_007503.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 878561 fliF 3728136 fliF Carboxydothermus hydrogenoformans Z-2901 flagellar MS-ring protein YP_359840.1 876975 D 246194 CDS YP_359841.1 78044850 3727975 878583..879599 1 NC_007503.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 879599 fliG 3727975 fliG Carboxydothermus hydrogenoformans Z-2901 flagellar motor switch protein G YP_359841.1 878583 D 246194 CDS YP_359842.1 78044111 3727227 879583..880299 1 NC_007503.1 identified by similarity to GB:AAM24662.1; flagellar protein 880299 3727227 CHY_0995 Carboxydothermus hydrogenoformans Z-2901 flagellar protein YP_359842.1 879583 D 246194 CDS YP_359843.1 78043388 3728773 880292..881596 1 NC_007503.1 identified by similarity to SP:P23445; match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; flagellum-specific ATP synthase 881596 fliI 3728773 fliI Carboxydothermus hydrogenoformans Z-2901 flagellum-specific ATP synthase YP_359843.1 880292 D 246194 CDS YP_359844.1 78042683 3726972 881600..882019 1 NC_007503.1 identified by similarity to GB:AAO36208.1; flagellar protein 882019 3726972 CHY_0997 Carboxydothermus hydrogenoformans Z-2901 flagellar protein YP_359844.1 881600 D 246194 CDS YP_359845.1 78045226 3728352 882037..884145 1 NC_007503.1 hypothetical protein 884145 3728352 CHY_0998 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359845.1 882037 D 246194 CDS YP_359846.1 78043304 3728609 884158..884565 1 NC_007503.1 identified by match to protein family HMM PF03963; flagellar hook assembly protein 884565 3728609 CHY_0999 Carboxydothermus hydrogenoformans Z-2901 flagellar hook assembly protein YP_359846.1 884158 D 246194 CDS YP_359847.1 78043868 3726687 884567..884941 1 NC_007503.1 identified by similarity to OMNI:NTL01OI1563; match to protein family HMM TIGR02530; flagellar operon protein 884941 3726687 CHY_1000 Carboxydothermus hydrogenoformans Z-2901 flagellar operon protein YP_359847.1 884567 D 246194 CDS YP_359848.1 78043762 3726795 885022..885807 1 NC_007503.1 identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein FlgG 885807 flgG 3726795 flgG Carboxydothermus hydrogenoformans Z-2901 flagellar basal-body rod protein FlgG YP_359848.1 885022 D 246194 CDS YP_359849.1 78044175 3727291 885828..886298 1 NC_007503.1 identified by match to protein family HMM PF03748; flagellar basal body protein FliL 886298 3727291 CHY_1002 Carboxydothermus hydrogenoformans Z-2901 flagellar basal body protein FliL YP_359849.1 885828 D 246194 CDS YP_359850.1 78043764 3726797 886315..886689 1 NC_007503.1 identified by similarity to SP:Q03593; match to protein family HMM PF01052; flagellar motor switch protein FliN 886689 3726797 CHY_1003 Carboxydothermus hydrogenoformans Z-2901 flagellar motor switch protein FliN YP_359850.1 886315 D 246194 CDS YP_359851.1 78042737 3726909 886652..887029 1 NC_007503.1 identified by similarity to PIR:F82116; flagellar protein 887029 3726909 CHY_1004 Carboxydothermus hydrogenoformans Z-2901 flagellar protein YP_359851.1 886652 D 246194 CDS YP_359852.1 78043022 3726476 887013..887777 1 NC_007503.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 887777 fliP 3726476 fliP Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthesis protein FliP YP_359852.1 887013 D 246194 CDS YP_359853.1 78043118 3726339 887798..888067 1 NC_007503.1 identified by similarity to SP:P35535; match to protein family HMM PF01313; match to protein family HMM TIGR01402; flagellar biosynthetic protein FliQ 888067 fliQ 3726339 fliQ Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthetic protein FliQ YP_359853.1 887798 D 246194 CDS YP_359854.1 78044979 3728104 888082..888849 1 NC_007503.1 identified by similarity to SP:P35537; match to protein family HMM PF01311; flagellar biosynthetic protein FliR 888849 fliR 3728104 fliR Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthetic protein FliR YP_359854.1 888082 D 246194 CDS YP_359855.1 78044903 3728028 888839..889900 1 NC_007503.1 identified by similarity to SP:P35538; match to protein family HMM PF01312; match to protein family HMM TIGR00328; flagellar biosynthetic protein FlhB 889900 flhB 3728028 flhB Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthetic protein FlhB YP_359855.1 888839 D 246194 CDS YP_359856.1 78044126 3727242 889913..891964 1 NC_007503.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 891964 flhA 3727242 flhA Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthesis protein FlhA YP_359856.1 889913 D 246194 CDS YP_359857.1 78042670 3728496 891967..893019 1 NC_007503.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 893019 flhF 3728496 flhF Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthesis regulator FlhF YP_359857.1 891967 D 246194 CDS YP_359858.1 78045153 3728279 893023..893898 1 NC_007503.1 identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656; flagellar biosynthesis protein 893898 3728279 CHY_1011 Carboxydothermus hydrogenoformans Z-2901 flagellar biosynthesis protein YP_359858.1 893023 D 246194 CDS YP_359859.1 78044241 3727358 893906..894553 1 NC_007503.1 identified by similarity to GB:AAO36194.1; flagellar protein 894553 3727358 CHY_1012 Carboxydothermus hydrogenoformans Z-2901 flagellar protein YP_359859.1 893906 D 246194 CDS YP_359860.1 78044674 3727796 894543..895307 1 NC_007503.1 identified by similarity to SP:P10726; similarity to SP:P31804; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02479; RNA polymerase sigma factor for flagellar operon 895307 fliA 3727796 fliA Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma factor for flagellar operon YP_359860.1 894543 D 246194 CDS YP_359861.1 78044159 3727275 895307..896041 1 NC_007503.1 identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook-basal body rod protein 896041 3727275 CHY_1014 Carboxydothermus hydrogenoformans Z-2901 flagellar hook-basal body rod protein YP_359861.1 895307 D 246194 CDS YP_359862.1 78044303 3727420 896056..896535 1 NC_007503.1 identified by similarity to SP:P40404; match to protein family HMM PF03975; chemotaxis protein CheD 896535 cheD 3727420 cheD Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheD YP_359862.1 896056 D 246194 CDS YP_359863.1 78043373 3728758 896535..897299 1 NC_007503.1 identified by similarity to SP:P31105; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 897299 cheR1 3728758 cheR1 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein methyltransferase YP_359863.1 896535 D 246194 CDS YP_359864.1 78043449 3728912 897319..897924 1 NC_007503.1 identified by similarity to SP:P40403; match to protein family HMM PF04509; chemotaxis protein CheC 897924 3728912 CHY_1017 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheC YP_359864.1 897319 D 246194 CDS YP_359865.1 78042666 3728492 897955..898320 1 NC_007503.1 identified by similarity to SP:P24072; match to protein family HMM PF00072; chemotaxis response regulator 898320 3728492 CHY_1018 Carboxydothermus hydrogenoformans Z-2901 chemotaxis response regulator YP_359865.1 897955 D 246194 CDS YP_359866.1 78044874 3727999 898341..899348 1 NC_007503.1 identified by similarity to SP:P23453; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397; flagellar motor switch protein FliM 899348 fliM 3727999 fliM Carboxydothermus hydrogenoformans Z-2901 flagellar motor switch protein FliM YP_359866.1 898341 D 246194 CDS YP_359867.1 78043679 3726710 899341..900384 1 NC_007503.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 900384 3726710 CHY_1020 Carboxydothermus hydrogenoformans Z-2901 flagellar motor switch protein YP_359867.1 899341 D 246194 CDS YP_359868.1 78042977 3726546 900534..902045 1 NC_007503.1 identified by similarity to PIR:C97174; match to protein family HMM PF03961; hypothetical protein 902045 3726546 CHY_1021 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359868.1 900534 D 246194 CDS YP_359869.1 78044609 3727730 902055..902741 1 NC_007503.1 hypothetical protein 902741 3727730 CHY_1022 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359869.1 902055 D 246194 CDS YP_359870.1 78042826 3726843 902757..904616 1 NC_007503.1 identified by similarity to SP:P39215; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743; methyl-accepting chemotaxis protein 904616 3726843 CHY_1023 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359870.1 902757 D 246194 CDS YP_359871.1 78044953 3728078 905140..905295 1 NC_007503.1 hypothetical protein 905295 3728078 CHY_1024 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359871.1 905140 D 246194 CDS YP_359872.1 78044569 3727689 905506..906480 1 NC_007503.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 906480 3727689 CHY_1025 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359872.1 905506 D 246194 CDS YP_359873.1 78045144 3728270 906494..906856 1 NC_007503.1 identified by similarity to SP:Q51455; match to protein family HMM PF00072; chemotaxis protein CheY 906856 cheY1 3728270 cheY1 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheY YP_359873.1 906494 D 246194 CDS YP_359874.1 78044088 3727204 907052..907597 1 NC_007503.1 identified by similarity to GB:AAM24290.1; hypothetical protein 907597 3727204 CHY_1027 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359874.1 907052 D 246194 CDS YP_359875.1 78043366 3728887 907594..908409 1 NC_007503.1 identified by similarity to SP:P07364; match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 908409 cheR2 3728887 cheR2 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein methyltransferase YP_359875.1 907594 D 246194 CDS YP_359876.1 78044786 3727910 908455..910398 1 NC_007503.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 910398 3727910 CHY_1029 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359876.1 908455 D 246194 CDS YP_359877.1 78044189 3727305 910423..911910 1 NC_007503.1 identified by match to protein family HMM PF01584; chemotaxis protein CheW 911910 cheW2 3727305 cheW2 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheW YP_359877.1 910423 D 246194 CDS YP_359878.1 78043599 3728752 911897..912961 1 NC_007503.1 identified by similarity to SP:Q05522; match to protein family HMM PF00072; match to protein family HMM PF01339; protein-glutamate methylesterase CheB 912961 cheB2 3728752 cheB2 Carboxydothermus hydrogenoformans Z-2901 protein-glutamate methylesterase CheB YP_359878.1 911897 D 246194 CDS YP_359879.1 78043687 3726250 912975..913331 1 NC_007503.1 identified by similarity to GB:CAB87128.1; match to protein family HMM PF00072; chemotaxis protein CheY 913331 cheY2 3726250 cheY2 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheY YP_359879.1 912975 D 246194 CDS YP_359880.1 78044758 3727882 913332..916034 1 NC_007503.1 identified by similarity to SP:P09384; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; chemotaxis protein CheA 916034 cheA2 3727882 cheA2 Carboxydothermus hydrogenoformans Z-2901 chemotaxis protein CheA YP_359880.1 913332 D 246194 CDS YP_359881.1 78042629 3727115 916034..916255 1 NC_007503.1 hypothetical protein 916255 3727115 CHY_1034 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359881.1 916034 D 246194 CDS YP_359882.1 78044785 3727909 complement(916595..916879) 1 NC_007503.1 hypothetical protein 916879 3727909 CHY_1036 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359882.1 916595 R 246194 CDS YP_359883.1 78043365 3728886 917121..917921 1 NC_007503.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361; phospho-2-dehydro-3-deoxyheptonate aldolase 917921 aroF2 3728886 aroF2 Carboxydothermus hydrogenoformans Z-2901 phospho-2-dehydro-3-deoxyheptonate aldolase YP_359883.1 917121 D 246194 CDS YP_359884.1 78043952 3726419 917927..918469 1 NC_007503.1 prephenate dehydratase domain-containing protein 918469 3726419 CHY_1038 Carboxydothermus hydrogenoformans Z-2901 prephenate dehydratase domain-containing protein YP_359884.1 917927 D 246194 CDS YP_359885.1 78044811 3727936 918562..919647 1 NC_007503.1 identified by similarity to GB:AAM23581.1; match to protein family HMM PF01950; hypothetical protein 919647 3727936 CHY_1039 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359885.1 918562 D 246194 CDS YP_359886.1 78043465 3728849 919808..920137 1 NC_007503.1 hypothetical protein 920137 3728849 CHY_1040 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359886.1 919808 D 246194 CDS YP_359887.1 78043748 3726274 complement(920121..921263) 1 NC_007503.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 921263 3726274 CHY_1041 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359887.1 920121 R 246194 CDS YP_359888.1 78044283 3727400 complement(921238..921954) 1 NC_007503.1 identified by match to protein family HMM PF04029; match to protein family HMM TIGR00298; 2-phosphosulfolactate phosphatase 921954 3727400 CHY_1042 Carboxydothermus hydrogenoformans Z-2901 2-phosphosulfolactate phosphatase YP_359888.1 921238 R 246194 CDS YP_359889.1 78045185 3728311 922041..923144 1 NC_007503.1 identified by similarity to SP:P37585; glycosyl transferase family protein 923144 3728311 CHY_1043 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359889.1 922041 D 246194 CDS YP_359890.1 78043992 3726227 923137..923295 1 NC_007503.1 identified by similarity to GB:AAP26478.1; match to protein family HMM PF07561; hypothetical protein 923295 3726227 CHY_1044 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359890.1 923137 D 246194 CDS YP_359891.1 78044371 3727489 923535..924353 1 NC_007503.1 identified by match to protein family HMM PF00015; methyl-accepting chemotaxis protein 924353 3727489 CHY_1045 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_359891.1 923535 D 246194 CDS YP_359892.1 78045113 3728239 complement(924336..925697) 1 NC_007503.1 identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 925697 pabB 3728239 pabB Carboxydothermus hydrogenoformans Z-2901 para-aminobenzoate synthase, component I YP_359892.1 924336 R 246194 CDS YP_359893.1 78043785 3726642 925891..926289 1 NC_007503.1 hypothetical protein 926289 3726642 CHY_1047 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359893.1 925891 D 246194 CDS YP_359894.1 78042852 3727067 926268..926456 1 NC_007503.1 hypothetical protein 926456 3727067 CHY_1048 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359894.1 926268 D 246194 CDS YP_359895.1 78044201 3727318 926471..928027 1 NC_007503.1 identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase 928027 3727318 CHY_1049 Carboxydothermus hydrogenoformans Z-2901 dolichyl-phosphate-mannose-protein mannosyltransferase YP_359895.1 926471 D 246194 CDS YP_359896.1 78044615 3727736 928042..928728 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 928728 3727736 CHY_1050 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359896.1 928042 D 246194 CDS YP_359897.1 78042665 3728490 928671..929111 1 NC_007503.1 identified by similarity to GB:CAD15025.1; hypothetical protein 929111 3728490 CHY_1051 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359897.1 928671 D 246194 CDS YP_359898.1 78043457 3728841 929131..929850 1 NC_007503.1 identified by similarity to OMNI:NTL01PA0206; hypothetical protein 929850 3728841 CHY_1052 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359898.1 929131 D 246194 CDS YP_359899.1 78045223 3728349 930095..931243 1 NC_007503.1 identified by similarity to OMNI:NTL01CA3019; hypothetical protein 931243 3728349 CHY_1053 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359899.1 930095 D 246194 CDS YP_359900.1 78042947 3727007 931290..932450 1 NC_007503.1 glycoside hydrolase 932450 3727007 CHY_1054 Carboxydothermus hydrogenoformans Z-2901 glycoside hydrolase YP_359900.1 931290 D 246194 CDS YP_359901.1 78043529 3726715 932450..933550 1 NC_007503.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 933550 3726715 CHY_1055 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359901.1 932450 D 246194 CDS YP_359902.1 78042888 3727064 complement(933547..934485) 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 934485 3727064 CHY_1056 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359902.1 933547 R 246194 CDS YP_359903.1 78044276 3727393 934570..935511 1 NC_007503.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; hypothetical protein 935511 3727393 CHY_1057 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359903.1 934570 D 246194 CDS YP_359904.1 78043838 3726579 935541..936698 1 NC_007503.1 identified by similarity to GB:AAD50490.1; match to protein family HMM PF00534; glycosyl transferase family protein 936698 3726579 CHY_1058 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359904.1 935541 D 246194 CDS YP_359905.1 78043113 3726334 936691..938019 1 NC_007503.1 identified by match to protein family HMM PF02397; sugar transferase 938019 3726334 CHY_1059 Carboxydothermus hydrogenoformans Z-2901 sugar transferase YP_359905.1 936691 D 246194 CDS YP_359906.1 78043940 3726407 938123..939127 1 NC_007503.1 identified by similarity to SP:Q9S1E6; cytochrome c-type protein 939127 3726407 CHY_1060 Carboxydothermus hydrogenoformans Z-2901 cytochrome c-type protein YP_359906.1 938123 D 246194 CDS YP_359907.1 78043478 3728805 939274..940185 1 NC_007503.1 identified by match to protein family HMM PF01436; NHL repeat-containing protein 940185 3728805 CHY_1061 Carboxydothermus hydrogenoformans Z-2901 NHL repeat-containing protein YP_359907.1 939274 D 246194 CDS YP_359908.1 78044928 3728053 940175..940414 1 NC_007503.1 hypothetical protein 940414 3728053 CHY_1062 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359908.1 940175 D 246194 CDS YP_359909.1 78042938 3726998 complement(940448..941710) 1 NC_007503.1 identified by similarity to GB:AAM71385.1; match to protein family HMM PF06245; hypothetical protein 941710 3726998 CHY_1063 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359909.1 940448 R 246194 CDS YP_359910.1 78043475 3728802 complement(941759..942079) 1 NC_007503.1 identified by match to protein family HMM PF03819; nucleotide pyrophosphohydrolase 942079 3728802 CHY_1064 Carboxydothermus hydrogenoformans Z-2901 nucleotide pyrophosphohydrolase YP_359910.1 941759 R 246194 CDS YP_359911.1 78044966 3728091 complement(942089..942652) 1 NC_007503.1 identified by similarity to GB:AAO35913.1; hypothetical protein 942652 3728091 CHY_1065 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359911.1 942089 R 246194 CDS YP_359912.1 78043218 3728582 942743..943414 1 NC_007503.1 hypothetical protein 943414 3728582 CHY_1066 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359912.1 942743 D 246194 CDS YP_359913.1 78042635 3727121 943505..944044 1 NC_007503.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203; hypoxanthine phosphoribosyltransferase 944044 hpt 3727121 hpt Carboxydothermus hydrogenoformans Z-2901 hypoxanthine phosphoribosyltransferase YP_359913.1 943505 D 246194 CDS YP_359914.1 78044956 3728081 944102..945631 1 NC_007503.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 945631 guaA 3728081 guaA Carboxydothermus hydrogenoformans Z-2901 GMP synthase YP_359914.1 944102 D 246194 CDS YP_359915.1 78043950 3726417 945673..946161 1 NC_007503.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 946161 purE 3726417 purE Carboxydothermus hydrogenoformans Z-2901 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_359915.1 945673 D 246194 CDS YP_359916.1 78043887 3726510 946183..947475 1 NC_007503.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 947475 purB 3726510 purB Carboxydothermus hydrogenoformans Z-2901 adenylosuccinate lyase YP_359916.1 946183 D 246194 CDS YP_359917.1 78043284 3728727 947489..948199 1 NC_007503.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 948199 purC 3728727 purC Carboxydothermus hydrogenoformans Z-2901 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_359917.1 947489 D 246194 CDS YP_359918.1 78042704 3726954 948210..948455 1 NC_007503.1 identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase subunit PurS 948455 purS 3726954 purS Carboxydothermus hydrogenoformans Z-2901 phosphoribosylformylglycinamidine synthase subunit PurS YP_359918.1 948210 D 246194 CDS YP_359919.1 78043830 3728440 948457..949161 1 NC_007503.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 949161 purQ 3728440 purQ Carboxydothermus hydrogenoformans Z-2901 phosphoribosylformylglycinamidine synthase I YP_359919.1 948457 D 246194 CDS YP_359920.1 78044209 3727326 949154..951340 1 NC_007503.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736; phosphoribosylformylglycinamidine synthase II 951340 purL 3727326 purL Carboxydothermus hydrogenoformans Z-2901 phosphoribosylformylglycinamidine synthase II YP_359920.1 949154 D 246194 CDS YP_359921.1 78043394 3728856 951325..952683 1 NC_007503.1 identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase 952683 purF 3728856 purF Carboxydothermus hydrogenoformans Z-2901 amidophosphoribosyltransferase YP_359921.1 951325 D 246194 CDS YP_359922.1 78044305 3727422 952700..953731 1 NC_007503.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase 953731 purM 3727422 purM Carboxydothermus hydrogenoformans Z-2901 phosphoribosylformylglycinamidine cyclo-ligase YP_359922.1 952700 D 246194 CDS YP_359923.1 78045060 3728186 953743..954372 1 NC_007503.1 identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 954372 purN 3728186 purN Carboxydothermus hydrogenoformans Z-2901 phosphoribosylglycinamide formyltransferase YP_359923.1 953743 D 246194 CDS YP_359924.1 78043098 3726377 954362..955876 1 NC_007503.1 identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; bifunctional purine biosynthesis protein PurH 955876 purH 3726377 purH Carboxydothermus hydrogenoformans Z-2901 bifunctional purine biosynthesis protein PurH YP_359924.1 954362 D 246194 CDS YP_359925.1 78044438 3727556 955889..957157 1 NC_007503.1 identified by match to protein family HMM PF01071; match to protein family HMM PF02842; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 957157 purD 3727556 purD Carboxydothermus hydrogenoformans Z-2901 phosphoribosylamine--glycine ligase YP_359925.1 955889 D 246194 CDS YP_359926.1 78044681 3727803 complement(957163..958161) 1 NC_007503.1 identified by similarity to GP:28202489; match to protein family HMM PF02568; hypothetical protein 958161 3727803 CHY_1080 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359926.1 957163 R 246194 CDS YP_359927.1 78042619 3726988 complement(958255..959271) 1 NC_007503.1 identified by similarity to GB:BAB81916.1; match to protein family HMM PF02568; hypothetical protein 959271 3726988 CHY_1081 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359927.1 958255 R 246194 CDS YP_359928.1 78043299 3728604 959502..959810 1 NC_007503.1 identified by similarity to GB:AAM23873.1; match to protein family HMM PF01371; match to protein family HMM TIGR02531; hypothetical protein 959810 3728604 CHY_1082 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359928.1 959502 D 246194 CDS YP_359929.1 78044079 3727195 959807..960781 1 NC_007503.1 identified by similarity to SP:O34459; match to protein family HMM PF00587; ATP phosphoribosyltransferase regulatory subunit 960781 3727195 CHY_1083 Carboxydothermus hydrogenoformans Z-2901 ATP phosphoribosyltransferase regulatory subunit YP_359929.1 959807 D 246194 CDS YP_359930.1 78044817 3727942 960852..961517 1 NC_007503.1 identified by match to protein family HMM PF01634; match to protein family HMM TIGR00070; ATP phosphoribosyltransferase 961517 hisG 3727942 hisG Carboxydothermus hydrogenoformans Z-2901 ATP phosphoribosyltransferase YP_359930.1 960852 D 246194 CDS YP_359931.1 78044940 3728065 961498..962775 1 NC_007503.1 identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase 962775 hisD 3728065 hisD Carboxydothermus hydrogenoformans Z-2901 histidinol dehydrogenase YP_359931.1 961498 D 246194 CDS YP_359932.1 78044277 3727394 962768..963817 1 NC_007503.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 963817 hisC1 3727394 hisC1 Carboxydothermus hydrogenoformans Z-2901 histidinol-phosphate aminotransferase YP_359932.1 962768 D 246194 CDS YP_359933.1 78042790 3726885 963814..964392 1 NC_007503.1 identified by similarity to SP:O34683; match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase 964392 hisB 3726885 hisB Carboxydothermus hydrogenoformans Z-2901 imidazoleglycerol-phosphate dehydratase YP_359933.1 963814 D 246194 CDS YP_359934.1 78043511 3726560 964396..964995 1 NC_007503.1 identified by match to protein family HMM PF00117; match to protein family HMM PF07685; match to protein family HMM TIGR01855; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 964995 hisH 3726560 hisH Carboxydothermus hydrogenoformans Z-2901 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_359934.1 964396 D 246194 CDS YP_359935.1 78043937 3726404 964992..965723 1 NC_007503.1 identified by similarity to SP:O35006; match to protein family HMM PF00977; match to protein family HMM TIGR00007; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 965723 hisA 3726404 hisA Carboxydothermus hydrogenoformans Z-2901 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_359935.1 964992 D 246194 CDS YP_359936.1 78044843 3727968 965723..966502 1 NC_007503.1 identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735; imidazole glycerol phosphate synthase subunit HisF 966502 hisF 3727968 hisF Carboxydothermus hydrogenoformans Z-2901 imidazole glycerol phosphate synthase subunit HisF YP_359936.1 965723 D 246194 CDS YP_359937.1 78044810 3727935 966492..967103 1 NC_007503.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 967103 hisIE 3727935 hisIE Carboxydothermus hydrogenoformans Z-2901 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_359937.1 966492 D 246194 CDS YP_359938.1 78043737 3728482 967264..967641 1 NC_007503.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 967641 3728482 CHY_1092 Carboxydothermus hydrogenoformans Z-2901 ArsR family transcriptional regulator YP_359938.1 967264 D 246194 CDS YP_359939.1 78045129 3728255 967638..968714 1 NC_007503.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; arsenical-resistance protein 968714 3728255 CHY_1093 Carboxydothermus hydrogenoformans Z-2901 arsenical-resistance protein YP_359939.1 967638 D 246194 CDS YP_359940.1 78043914 3726342 968800..969417 1 NC_007503.1 identified by similarity to PIR:F72273; match to protein family HMM PF02660; hypothetical protein 969417 3726342 CHY_1094 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359940.1 968800 D 246194 CDS YP_359941.1 78044353 3727471 969504..970691 1 NC_007503.1 Selenoprotein. identified by similarity to SP:P36655; similarity to GP:6714962; match to protein family HMM PF00085; match to protein family HMM PF02683; thioredoxin 970691 3727471 CHY_1095 Carboxydothermus hydrogenoformans Z-2901 thioredoxin YP_359941.1 969504 D 246194 CDS YP_359942.1 78044565 3727684 complement(970755..971000) 1 NC_007503.1 identified by similarity to GB:AAM72950.1; match to protein family HMM TIGR00412; redox-active disulfide protein 2 971000 3727684 CHY_1096 Carboxydothermus hydrogenoformans Z-2901 redox-active disulfide protein 2 YP_359942.1 970755 R 246194 CDS YP_359943.1 78043626 3726754 complement(971029..971982) 1 NC_007503.1 identified by match to protein family HMM PF03773; permease 971982 3726754 CHY_1097 Carboxydothermus hydrogenoformans Z-2901 permease YP_359943.1 971029 R 246194 CDS YP_359944.1 78042720 3726931 complement(971975..972304) 1 NC_007503.1 identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 972304 3726931 CHY_1098 Carboxydothermus hydrogenoformans Z-2901 ArsR family transcriptional regulator YP_359944.1 971975 R 246194 CDS YP_359945.1 78045143 3728269 972468..974624 1 NC_007503.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073; ATP-dependent DNA helicase PcrA 974624 pcrA 3728269 pcrA Carboxydothermus hydrogenoformans Z-2901 ATP-dependent DNA helicase PcrA YP_359945.1 972468 D 246194 CDS YP_359946.1 78043193 3728712 974637..976631 1 NC_007503.1 identified by match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 976631 ligA 3728712 ligA Carboxydothermus hydrogenoformans Z-2901 NAD-dependent DNA ligase YP_359946.1 974637 D 246194 CDS YP_359947.1 78045230 3728356 976711..976995 1 NC_007503.1 identified by similarity to SP:O06492; match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln) amidotransferase subunit C 976995 gatC 3728356 gatC Carboxydothermus hydrogenoformans Z-2901 glutamyl-tRNA(Gln) amidotransferase subunit C YP_359947.1 976711 D 246194 CDS YP_359948.1 78044168 3727284 977010..978467 1 NC_007503.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 978467 gatA 3727284 gatA Carboxydothermus hydrogenoformans Z-2901 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_359948.1 977010 D 246194 CDS YP_359949.1 78043368 3728889 978478..979923 1 NC_007503.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 979923 gatB 3728889 gatB Carboxydothermus hydrogenoformans Z-2901 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_359949.1 978478 D 246194 CDS YP_359950.1 78044757 3727881 980104..981246 1 NC_007503.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase 981246 aksA 3727881 aksA Carboxydothermus hydrogenoformans Z-2901 trans-homoaconitate synthase YP_359950.1 980104 D 246194 CDS YP_359951.1 78043811 3726629 981249..982502 1 NC_007503.1 identified by match to protein family HMM PF00330; match to protein family HMM TIGR01343; match to protein family HMM TIGR02086; 3-isopropylmalate dehydratase large subunit 982502 3726629 CHY_1105 Carboxydothermus hydrogenoformans Z-2901 3-isopropylmalate dehydratase large subunit YP_359951.1 981249 D 246194 CDS YP_359952.1 78043571 3726290 982520..983017 1 NC_007503.1 identified by match to protein family HMM PF00694; match to protein family HMM TIGR02087; 3-isopropylmalate dehydratase small subunit 983017 3726290 CHY_1106 Carboxydothermus hydrogenoformans Z-2901 3-isopropylmalate dehydratase small subunit YP_359952.1 982520 D 246194 CDS YP_359953.1 78042663 3728488 983029..984027 1 NC_007503.1 identified by match to protein family HMM PF00180; NAD-dependent isocitrate dehydrogenase 984027 3728488 CHY_1107 Carboxydothermus hydrogenoformans Z-2901 NAD-dependent isocitrate dehydrogenase YP_359953.1 983029 D 246194 CDS YP_359954.1 78044990 3728115 984107..984799 1 NC_007503.1 identified by match to protein family HMM PF02517; CAAX amino terminal protease 984799 3728115 CHY_1108 Carboxydothermus hydrogenoformans Z-2901 CAAX amino terminal protease YP_359954.1 984107 D 246194 CDS YP_359955.1 78043833 3728443 complement(984947..986245) 1 NC_007503.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISChy1, transposase 986245 3728443 CHY_1109 Carboxydothermus hydrogenoformans Z-2901 ISChy1, transposase YP_359955.1 984947 R 246194 CDS YP_359956.1 78043251 3728634 986546..986944 1 NC_007503.1 identified by match to protein family HMM TIGR01987; nucleotidyltransferase substrate-binding protein 986944 3728634 CHY_1110 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase substrate-binding protein YP_359956.1 986546 D 246194 CDS YP_359957.1 78044064 3727180 986941..987237 1 NC_007503.1 identified by similarity to GB:AAM25166.1; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 987237 3727180 CHY_1111 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_359957.1 986941 D 246194 CDS YP_359958.1 78044405 3727523 987260..988585 1 NC_007503.1 identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase RumA 988585 rumA 3727523 rumA Carboxydothermus hydrogenoformans Z-2901 23S rRNA (uracil-5-)-methyltransferase RumA YP_359958.1 987260 D 246194 CDS YP_359959.1 78044227 3727344 complement(988621..988917) 1 NC_007503.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; carboxymuconolactone decarboxylase 988917 3727344 CHY_1113 Carboxydothermus hydrogenoformans Z-2901 carboxymuconolactone decarboxylase YP_359959.1 988621 R 246194 CDS YP_359960.1 78044840 3727965 complement(988932..989375) 1 NC_007503.1 identified by match to protein family HMM PF01047; MarR family transcriptional regulator 989375 3727965 CHY_1114 Carboxydothermus hydrogenoformans Z-2901 MarR family transcriptional regulator YP_359960.1 988932 R 246194 CDS YP_359961.1 78042799 3726855 complement(989368..990555) 1 NC_007503.1 identified by match to protein family HMM PF07690; transporter 990555 3726855 CHY_1115 Carboxydothermus hydrogenoformans Z-2901 transporter YP_359961.1 989368 R 246194 CDS YP_359962.1 78043347 3728536 complement(990693..991463) 1 NC_007503.1 identified by similarity to SP:P15026; match to protein family HMM PF01695; ISChy4, transposition helper protein 991463 3728536 CHY_1116 Carboxydothermus hydrogenoformans Z-2901 ISChy4, transposition helper protein YP_359962.1 990693 R 246194 CDS YP_359963.1 78043968 3726748 complement(991460..992689) 1 NC_007503.1 identified by match to protein family HMM PF00665; ISChy4, transposase 992689 3726748 CHY_1117 Carboxydothermus hydrogenoformans Z-2901 ISChy4, transposase YP_359963.1 991460 R 246194 CDS YP_359964.1 78045161 3728287 992957..993982 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00248; aldo/keto reductase 993982 3728287 CHY_1118 Carboxydothermus hydrogenoformans Z-2901 aldo/keto reductase YP_359964.1 992957 D 246194 CDS YP_359965.1 78044542 3727661 complement(993948..994853) 1 NC_007503.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A 994853 3727661 CHY_1119 Carboxydothermus hydrogenoformans Z-2901 ribosomal large subunit pseudouridine synthase A YP_359965.1 993948 R 246194 CDS YP_359966.1 78045103 3728229 995005..995193 1 NC_007503.1 identified by similarity to SP:P00203; match to protein family HMM PF00037; ferredoxin 995193 3728229 CHY_1120 Carboxydothermus hydrogenoformans Z-2901 ferredoxin YP_359966.1 995005 D 246194 CDS YP_359967.1 78043065 3726382 995456..996088 1 NC_007503.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 996088 nth 3726382 nth Carboxydothermus hydrogenoformans Z-2901 endonuclease III YP_359967.1 995456 D 246194 CDS YP_359968.1 78044914 3728039 996081..996542 1 NC_007503.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; RNA methyltransferase 996542 3728039 CHY_1122 Carboxydothermus hydrogenoformans Z-2901 RNA methyltransferase YP_359968.1 996081 D 246194 CDS YP_359969.1 78043377 3728762 996535..997152 1 NC_007503.1 hypothetical protein 997152 3728762 CHY_1123 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359969.1 996535 D 246194 CDS YP_359970.1 78045086 3728212 997163..998518 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 998518 3728212 CHY_1124 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_359970.1 997163 D 246194 CDS YP_359971.1 78044540 3727659 998499..999116 1 NC_007503.1 identified by match to protein family HMM PF00072; response regulator 999116 3727659 CHY_1125 Carboxydothermus hydrogenoformans Z-2901 response regulator YP_359971.1 998499 D 246194 CDS YP_359972.1 78043619 3728830 999260..1000249 1 NC_007503.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 1000249 3728830 CHY_1126 Carboxydothermus hydrogenoformans Z-2901 oligopeptide/dipeptide ABC transporter ATP-binding protein YP_359972.1 999260 D 246194 CDS YP_359973.1 78044045 3727160 1000230..1001216 1 NC_007503.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; oligopeptide/dipeptide ABC transporter ATP-binding protein 1001216 3727160 CHY_1127 Carboxydothermus hydrogenoformans Z-2901 oligopeptide/dipeptide ABC transporter ATP-binding protein YP_359973.1 1000230 D 246194 CDS YP_359974.1 78044807 3727932 1001280..1002881 1 NC_007503.1 identified by similarity to SP:P23847; match to protein family HMM PF00496; oligopeptide/dipeptide ABC transporter peptide-binding protein 1002881 3727932 CHY_1128 Carboxydothermus hydrogenoformans Z-2901 oligopeptide/dipeptide ABC transporter peptide-binding protein YP_359974.1 1001280 D 246194 CDS YP_359975.1 78044226 3727343 1002943..1003947 1 NC_007503.1 identified by similarity to SP:P94311; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 1003947 3727343 CHY_1129 Carboxydothermus hydrogenoformans Z-2901 oligopeptide/dipeptide ABC transporter permease YP_359975.1 1002943 D 246194 CDS YP_359976.1 78044777 3727901 1003961..1004809 1 NC_007503.1 identified by similarity to SP:P94312; match to protein family HMM PF00528; oligopeptide/dipeptide ABC transporter permease 1004809 3727901 CHY_1130 Carboxydothermus hydrogenoformans Z-2901 oligopeptide/dipeptide ABC transporter permease YP_359976.1 1003961 D 246194 CDS YP_359977.1 78044536 3727655 1004886..1005758 1 NC_007503.1 identified by similarity to GB:BAC69158.1; match to protein family HMM PF00004; match to protein family HMM PF07728; hypothetical protein 1005758 3727655 CHY_1131 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359977.1 1004886 D 246194 CDS YP_359978.1 78044161 3727277 1005772..1007007 1 NC_007503.1 identified by similarity to GB:CAB76247.1; match to protein family HMM PF05762; CoxE-like protein 1007007 3727277 CHY_1132 Carboxydothermus hydrogenoformans Z-2901 CoxE-like protein YP_359978.1 1005772 D 246194 CDS YP_359979.1 78044491 3727610 1007021..1007728 1 NC_007503.1 identified by similarity to GB:AAP25493.1; match to protein family HMM PF02585; hypothetical protein 1007728 3727610 CHY_1133 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359979.1 1007021 D 246194 CDS YP_359980.1 78043527 3726576 1007737..1008873 1 NC_007503.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1008873 3726576 CHY_1134 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_359980.1 1007737 D 246194 CDS YP_359981.1 78045079 3728205 1008919..1009320 1 NC_007503.1 identified by match to protein family HMM PF01475; FUR family transcriptional regulator 1009320 3728205 CHY_1135 Carboxydothermus hydrogenoformans Z-2901 FUR family transcriptional regulator YP_359981.1 1008919 D 246194 CDS YP_359982.1 78042899 3727037 1009321..1010628 1 NC_007503.1 identified by similarity to PIR:G84046; match to protein family HMM PF00571; match to protein family HMM PF07085; hypothetical protein 1010628 3727037 CHY_1136 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359982.1 1009321 D 246194 CDS YP_359983.1 78044608 3727729 1010676..1014026 1 NC_007503.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 1014026 dnaE 3727729 dnaE Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III DnaE YP_359983.1 1010676 D 246194 CDS YP_359984.1 78043272 3728558 1014750..1014992 1 NC_007503.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination; transcription attenuation protein MtrB 1014992 mtrB 3728558 mtrB Carboxydothermus hydrogenoformans Z-2901 transcription attenuation protein MtrB YP_359984.1 1014750 D 246194 CDS YP_359985.1 78045130 3728256 1015011..1015196 1 NC_007503.1 identified by similarity to GB:AAM25009.1; hypothetical protein 1015196 3728256 CHY_1140 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359985.1 1015011 D 246194 CDS YP_359986.1 78044562 3727681 1015209..1016051 1 NC_007503.1 identified by similarity to PIR:A97338; match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1016051 accD 3727681 accD Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_359986.1 1015209 D 246194 CDS YP_359987.1 78044709 3727831 1016066..1017037 1 NC_007503.1 identified by similarity to SP:O34847; match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1017037 accA 3727831 accA Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_359987.1 1016066 D 246194 CDS YP_359988.1 78042620 3727106 1017037..1018002 1 NC_007503.1 identified by similarity to SP:P00512; match to protein family HMM PF00365; match to protein family HMM TIGR02482; 6-phosphofructokinase 1018002 pfkA 3727106 pfkA Carboxydothermus hydrogenoformans Z-2901 6-phosphofructokinase YP_359988.1 1017037 D 246194 CDS YP_359989.1 78043581 3726300 1018022..1019773 1 NC_007503.1 identified by match to protein family HMM PF00224; match to protein family HMM PF00391; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase 1019773 pyk 3726300 pyk Carboxydothermus hydrogenoformans Z-2901 pyruvate kinase YP_359989.1 1018022 D 246194 CDS YP_359990.1 78042716 3726966 1019799..1020062 1 NC_007503.1 identified by similarity to SP:P39146; ComF operon protein 1020062 3726966 CHY_1145 Carboxydothermus hydrogenoformans Z-2901 ComF operon protein YP_359990.1 1019799 D 246194 CDS YP_359991.1 78043651 3728453 1020129..1020818 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1020818 3728453 CHY_1146 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_359991.1 1020129 D 246194 CDS YP_359992.1 78044170 3727286 1020861..1021838 1 NC_007503.1 identified by similarity to SP:P35150; match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase 1021838 3727286 CHY_1147 Carboxydothermus hydrogenoformans Z-2901 D-alanyl-D-alanine carboxypeptidase YP_359992.1 1020861 D 246194 CDS YP_359993.1 78043889 3726512 1021851..1023080 1 NC_007503.1 identified by similarity to SP:Q04805; match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 1023080 3726512 CHY_1148 Carboxydothermus hydrogenoformans Z-2901 M16 family peptidase YP_359993.1 1021851 D 246194 CDS YP_359994.1 78043988 3726223 1023136..1023441 1 NC_007503.1 hypothetical protein 1023441 3726223 CHY_1149 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359994.1 1023136 D 246194 CDS YP_359995.1 78043788 3726645 1023404..1023649 1 NC_007503.1 identified by similarity to GB:AAM24837.1; hypothetical protein 1023649 3726645 CHY_1150 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_359995.1 1023404 D 246194 CDS YP_359996.1 78044285 3727402 1023741..1024532 1 NC_007503.1 identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 1024532 dapB 3727402 dapB Carboxydothermus hydrogenoformans Z-2901 dihydrodipicolinate reductase YP_359996.1 1023741 D 246194 CDS YP_359997.1 78043557 3726782 1024607..1025515 1 NC_007503.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A 1025515 spoVFA 3726782 spoVFA Carboxydothermus hydrogenoformans Z-2901 dipicolinate synthase subunit A YP_359997.1 1024607 D 246194 CDS YP_359998.1 78042836 3727090 1025512..1026084 1 NC_007503.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B 1026084 spoVFB 3727090 spoVFB Carboxydothermus hydrogenoformans Z-2901 dipicolinate synthase subunit B YP_359998.1 1025512 D 246194 CDS YP_359999.1 78044721 3727843 1026108..1027127 1 NC_007503.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 1027127 asd 3727843 asd Carboxydothermus hydrogenoformans Z-2901 aspartate-semialdehyde dehydrogenase YP_359999.1 1026108 D 246194 CDS YP_360000.1 78044009 3726244 1027120..1028352 1 NC_007503.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase 1028352 3726244 CHY_1155 Carboxydothermus hydrogenoformans Z-2901 aspartate kinase YP_360000.1 1027120 D 246194 CDS YP_360001.1 78044485 3727604 1028375..1029256 1 NC_007503.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1029256 dapA1 3727604 dapA1 Carboxydothermus hydrogenoformans Z-2901 dihydrodipicolinate synthase YP_360001.1 1028375 D 246194 CDS YP_360002.1 78043054 3726430 1029386..1031050 1 NC_007503.1 identified by similarity to GB:AAP08592.1; match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649; metallo-beta-lactamase 1031050 3726430 CHY_1157 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_360002.1 1029386 D 246194 CDS YP_360003.1 78045214 3728340 1031065..1031850 1 NC_007503.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 1031850 3728340 CHY_1158 Carboxydothermus hydrogenoformans Z-2901 undecaprenyl pyrophosphate phosphatase YP_360003.1 1031065 D 246194 CDS YP_360004.1 78043164 3728683 1031875..1034079 1 NC_007503.1 identified by similarity to SP:P21458; match to protein family HMM PF01580; DNA translocase FtsK 1034079 3728683 CHY_1159 Carboxydothermus hydrogenoformans Z-2901 DNA translocase FtsK YP_360004.1 1031875 D 246194 CDS YP_360005.1 78044905 3728030 1034159..1034641 1 NC_007503.1 identified by similarity to SP:P50739; match to protein family HMM PF07486; spore cortex-lytic protein 1034641 3728030 CHY_1160 Carboxydothermus hydrogenoformans Z-2901 spore cortex-lytic protein YP_360005.1 1034159 D 246194 CDS YP_360006.1 78043722 3728467 1034646..1036013 1 NC_007503.1 identified by similarity to GB:AAP26583.1; hypothetical protein 1036013 3728467 CHY_1161 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360006.1 1034646 D 246194 CDS YP_360007.1 78044383 3727501 1036110..1037150 1 NC_007503.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1037150 3727501 CHY_1162 Carboxydothermus hydrogenoformans Z-2901 tRNA 2-selenouridine synthase YP_360007.1 1036110 D 246194 CDS YP_360008.1 78044924 3728049 1037147..1037839 1 NC_007503.1 identified by similarity to PIR:AI1937; hypothetical protein 1037839 3728049 CHY_1163 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360008.1 1037147 D 246194 CDS YP_360009.1 78043523 3726572 1037859..1039175 1 NC_007503.1 identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01125; tRNA modifying protein 1039175 3726572 CHY_1164 Carboxydothermus hydrogenoformans Z-2901 tRNA modifying protein YP_360009.1 1037859 D 246194 CDS YP_360010.1 78044108 3727224 1039168..1039659 1 NC_007503.1 identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; competence/damage-inducible family protein 1039659 3727224 CHY_1165 Carboxydothermus hydrogenoformans Z-2901 competence/damage-inducible family protein YP_360010.1 1039168 D 246194 CDS YP_360011.1 78044103 3727219 1039713..1040744 1 NC_007503.1 identified by similarity to SP:P16971; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein 1040744 recA 3727219 recA Carboxydothermus hydrogenoformans Z-2901 recA protein YP_360011.1 1039713 D 246194 CDS YP_360012.1 78043416 3728781 1040747..1041190 1 NC_007503.1 identified by match to protein family HMM PF02631; regulatory protein RecX 1041190 recX 3728781 recX Carboxydothermus hydrogenoformans Z-2901 regulatory protein RecX YP_360012.1 1040747 D 246194 CDS YP_360013.1 78042872 3727048 1041322..1042863 1 NC_007503.1 identified by similarity to SP:Q8RA57; match to protein family HMM PF00013; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG/KH domain-containing protein 1042863 3727048 CHY_1168 Carboxydothermus hydrogenoformans Z-2901 HDIG/KH domain-containing protein YP_360013.1 1041322 D 246194 CDS YP_360014.1 78044863 3727988 1042953..1043447 1 NC_007503.1 hypothetical protein 1043447 3727988 CHY_1169 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360014.1 1042953 D 246194 CDS YP_360015.1 78044516 3727635 1043459..1044241 1 NC_007503.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282; Ser/Thr protein phosphatase 1044241 3727635 CHY_1170 Carboxydothermus hydrogenoformans Z-2901 Ser/Thr protein phosphatase YP_360015.1 1043459 D 246194 CDS YP_360016.1 78042997 3726489 1044357..1044623 1 NC_007503.1 identified by similarity to SP:P45693; match to protein family HMM PF04232; stage V sporulation protein S 1044623 spoVS 3726489 spoVS Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein S YP_360016.1 1044357 D 246194 CDS YP_360017.1 78043313 3728618 1044700..1045584 1 NC_007503.1 identified by similarity to PIR:D75070; match to protein family HMM PF01244; dipeptidase 1045584 3728618 CHY_1172 Carboxydothermus hydrogenoformans Z-2901 dipeptidase YP_360017.1 1044700 D 246194 CDS YP_360018.1 78044747 3727871 1045612..1046763 1 NC_007503.1 identified by similarity to SP:P77434; match to protein family HMM PF00155; class I and II aminotransferase 1046763 3727871 CHY_1173 Carboxydothermus hydrogenoformans Z-2901 class I and II aminotransferase YP_360018.1 1045612 D 246194 CDS YP_360019.1 78043820 3728430 1046760..1047185 1 NC_007503.1 hypothetical protein 1047185 3728430 CHY_1174 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360019.1 1046760 D 246194 CDS YP_360020.1 78043575 3726294 complement(1047186..1047458) 1 NC_007503.1 identified by similarity to SP:P37549; match to protein family HMM PF00269; small acid-soluble spore protein 1047458 3726294 CHY_1175 Carboxydothermus hydrogenoformans Z-2901 small acid-soluble spore protein YP_360020.1 1047186 R 246194 CDS YP_360021.1 78042653 3726317 1047577..1049028 1 NC_007503.1 identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM PF03060; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 1049028 guaB 3726317 guaB Carboxydothermus hydrogenoformans Z-2901 inosine-5'-monophosphate dehydrogenase YP_360021.1 1047577 D 246194 CDS YP_360022.1 78044986 3728111 complement(1049016..1049876) 1 NC_007503.1 identified by similarity to GB:BAC69158.1; match to protein family HMM PF00004; match to protein family HMM PF07728; ATPase AAA 1049876 3728111 CHY_1177 Carboxydothermus hydrogenoformans Z-2901 ATPase AAA YP_360022.1 1049016 R 246194 CDS YP_360023.1 78044122 3727238 1049908..1051197 1 NC_007503.1 identified by similarity to PIR:G70678; hypothetical protein 1051197 3727238 CHY_1178 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360023.1 1049908 D 246194 CDS YP_360024.1 78043836 3726577 1051311..1052204 1 NC_007503.1 hypothetical protein 1052204 3726577 CHY_1179 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360024.1 1051311 D 246194 CDS YP_360025.1 78044000 3726235 1052171..1052644 1 NC_007503.1 hypothetical protein 1052644 3726235 CHY_1180 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360025.1 1052171 D 246194 CDS YP_360026.1 78042793 3726888 1052779..1053036 1 NC_007503.1 hypothetical protein 1053036 3726888 CHY_1181 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360026.1 1052779 D 246194 CDS YP_360027.1 78043510 3726559 complement(1053007..1053168) 1 NC_007503.1 hypothetical protein 1053168 3726559 CHY_1182 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360027.1 1053007 R 246194 CDS YP_360028.1 78044667 3727789 1053236..1053352 1 NC_007503.1 hypothetical protein 1053352 3727789 CHY_1183 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360028.1 1053236 D 246194 CDS YP_360029.1 78043095 3726373 1053400..1054608 1 NC_007503.1 identified by match to protein family HMM PF06050; (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha 1054608 3726373 CHY_1184 Carboxydothermus hydrogenoformans Z-2901 (R)-2-hydroxyglutaryl-CoA dehydratase subunit alpha YP_360029.1 1053400 D 246194 CDS YP_360030.1 78045224 3728350 1054611..1056263 1 NC_007503.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM PF06050; match to protein family HMM TIGR00241; CoA dehydratase subunit/(R)-2-hydroxyglutaryl-CoA dehydratase activator 1056263 3728350 CHY_1185 Carboxydothermus hydrogenoformans Z-2901 CoA dehydratase subunit/(R)-2-hydroxyglutaryl-CoA dehydratase activator YP_360030.1 1054611 D 246194 CDS YP_360031.1 78042698 3726948 1056394..1057140 1 NC_007503.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1057140 3726948 CHY_1186 Carboxydothermus hydrogenoformans Z-2901 short chain dehydrogenase/reductase oxidoreductase YP_360031.1 1056394 D 246194 CDS YP_360032.1 78044338 3727455 complement(1057651..1057983) 1 NC_007503.1 identified by match to protein family HMM PF01243; hypothetical protein 1057983 3727455 CHY_1187 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360032.1 1057651 R 246194 CDS YP_360033.1 78043742 3726268 1058419..1058994 1 NC_007503.1 identified by similarity to OMNI:NTL02MA3578; hypothetical protein 1058994 3726268 CHY_1188 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360033.1 1058419 D 246194 CDS YP_360034.1 78044439 3727557 1059265..1059738 1 NC_007503.1 hypothetical protein 1059738 3727557 CHY_1189 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360034.1 1059265 D 246194 CDS YP_360035.1 78044323 3727440 complement(1059704..1060006) 1 NC_007503.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 1060006 3727440 CHY_1190 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_360035.1 1059704 R 246194 CDS YP_360036.1 78045048 3728174 1060220..1060336 1 NC_007503.1 hypothetical protein 1060336 3728174 CHY_1191 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360036.1 1060220 D 246194 CDS YP_360037.1 78043563 3726789 1060582..1061271 1 NC_007503.1 hypothetical protein 1061271 3726789 CHY_1192 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360037.1 1060582 D 246194 CDS YP_360038.1 78044368 3727486 1061268..1061999 1 NC_007503.1 hypothetical protein 1061999 3727486 CHY_1193 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360038.1 1061268 D 246194 CDS YP_360039.1 78043780 3726636 1061992..1062693 1 NC_007503.1 PII family protein 1062693 3726636 CHY_1194 Carboxydothermus hydrogenoformans Z-2901 PII family protein YP_360039.1 1061992 D 246194 CDS YP_360040.1 78042814 3726831 complement(1063180..1063290) 1 NC_007503.1 hypothetical protein 1063290 3726831 CHY_1195 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360040.1 1063180 R 246194 CDS YP_360041.1 78043960 3726740 1064851..1065348 1 NC_007503.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 1065348 3726740 CHY_1197 Carboxydothermus hydrogenoformans Z-2901 nucleotide-binding protein YP_360041.1 1064851 D 246194 CDS YP_360042.1 78043350 3728539 1065398..1065568 1 NC_007503.1 hypothetical protein 1065568 3728539 CHY_1198 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360042.1 1065398 D 246194 CDS YP_360043.1 78044995 3728120 1065578..1065673 1 NC_007503.1 hypothetical protein 1065673 3728120 CHY_1199 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360043.1 1065578 D 246194 CDS YP_360044.1 78042844 3727098 1065661..1067556 1 NC_007503.1 identified by similarity to SP:P39134; match to protein family HMM PF06798; prkA protein 1067556 prkA 3727098 prkA Carboxydothermus hydrogenoformans Z-2901 prkA protein YP_360044.1 1065661 D 246194 CDS YP_360045.1 78043949 3726416 1067567..1068703 1 NC_007503.1 identified by similarity to SP:Q9KE27; match to protein family HMM PF04285; hypothetical protein 1068703 3726416 CHY_1201 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360045.1 1067567 D 246194 CDS YP_360046.1 78043412 3728777 1068720..1070060 1 NC_007503.1 identified by similarity to SP:P37875; match to protein family HMM PF04293; stage V sporulation protein R 1070060 spoVR 3728777 spoVR Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein R YP_360046.1 1068720 D 246194 CDS YP_360047.1 78042929 3726989 1070038..1070253 1 NC_007503.1 hypothetical protein 1070253 3726989 CHY_1203 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360047.1 1070038 D 246194 CDS YP_360048.1 78043589 3728742 1070623..1071963 1 NC_007503.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766; ISChy5, transposase 1071963 3728742 CHY_1205 Carboxydothermus hydrogenoformans Z-2901 ISChy5, transposase YP_360048.1 1070623 D 246194 CDS YP_360049.1 78042835 3727089 1072087..1073067 1 NC_007503.1 identified by similarity to SP:P31114; match to protein family HMM PF00348; heptaprenyl diphosphate synthase component II 1073067 hepT 3727089 hepT Carboxydothermus hydrogenoformans Z-2901 heptaprenyl diphosphate synthase component II YP_360049.1 1072087 D 246194 CDS YP_360050.1 78044730 3727853 1073150..1074499 1 NC_007503.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1074499 hemA 3727853 hemA Carboxydothermus hydrogenoformans Z-2901 glutamyl-tRNA reductase YP_360050.1 1073150 D 246194 CDS YP_360051.1 78044433 3727551 1074465..1075400 1 NC_007503.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1075400 hemC 3727551 hemC Carboxydothermus hydrogenoformans Z-2901 porphobilinogen deaminase YP_360051.1 1074465 D 246194 CDS YP_360052.1 78043231 3728595 1075393..1076424 1 NC_007503.1 identified by similarity to SP:P21248; match to protein family HMM PF02602; uroporphyrinogen-III synthase 1076424 hemD 3728595 hemD Carboxydothermus hydrogenoformans Z-2901 uroporphyrinogen-III synthase YP_360052.1 1075393 D 246194 CDS YP_360053.1 78045155 3728281 1076433..1077410 1 NC_007503.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1077410 hemB 3728281 hemB Carboxydothermus hydrogenoformans Z-2901 delta-aminolevulinic acid dehydratase YP_360053.1 1076433 D 246194 CDS YP_360054.1 78044427 3727545 1077411..1078406 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 1078406 3727545 CHY_1211 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_360054.1 1077411 D 246194 CDS YP_360055.1 78044254 3727371 1078424..1079722 1 NC_007503.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1079722 hemL 3727371 hemL Carboxydothermus hydrogenoformans Z-2901 glutamate-1-semialdehyde aminotransferase YP_360055.1 1078424 D 246194 CDS YP_360056.1 78044763 3727887 1080378..1080683 1 NC_007503.1 identified by similarity to GB:BAC14986.1; hypothetical protein 1080683 3727887 CHY_1217 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360056.1 1080378 D 246194 CDS YP_360057.1 78042727 3726938 1080715..1082340 1 NC_007503.1 identified by match to protein family HMM PF03109; ABC1 family protein 1082340 3726938 CHY_1218 Carboxydothermus hydrogenoformans Z-2901 ABC1 family protein YP_360057.1 1080715 D 246194 CDS YP_360058.1 78043401 3728863 1082402..1083391 1 NC_007503.1 hypothetical protein 1083391 3728863 CHY_1219 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360058.1 1082402 D 246194 CDS YP_360059.1 78044249 3727366 1083590..1084354 1 NC_007503.1 identified by similarity to SP:P31897; match to protein family HMM PF01656; CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC 1084354 cooC1 3727366 cooC1 Carboxydothermus hydrogenoformans Z-2901 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC YP_360059.1 1083590 D 246194 CDS YP_360060.1 78042742 3726914 1086445..1088643 1 NC_007503.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta 1088643 acsB 3726914 acsB Carboxydothermus hydrogenoformans Z-2901 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta YP_360060.1 1086445 D 246194 CDS YP_360061.1 78043584 3726303 1088732..1090069 1 NC_007503.1 part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit gamma 1090069 acsC 3726303 acsC Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA decarbonylase/synthase complex subunit gamma YP_360061.1 1088732 D 246194 CDS YP_360062.1 78044449 3727567 1090102..1091997 1 NC_007503.1 identified by match to protein family HMM PF00111; iron-sulfur cluster binding protein 1091997 3727567 CHY_1224 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur cluster binding protein YP_360062.1 1090102 D 246194 CDS YP_360063.1 78044060 3727176 1092019..1092777 1 NC_007503.1 identified by similarity to GP:20467243; match to protein family HMM PF01656; CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC 1092777 cooC2 3727176 cooC2 Carboxydothermus hydrogenoformans Z-2901 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC YP_360063.1 1092019 D 246194 CDS YP_360064.1 78042962 3726824 1092806..1093738 1 NC_007503.1 part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit delta 1093738 acsD 3726824 acsD Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA decarbonylase/synthase complex subunit delta YP_360064.1 1092806 D 246194 CDS YP_360065.1 78044202 3727319 1093760..1094551 1 NC_007503.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 1094551 acsE 3727319 acsE Carboxydothermus hydrogenoformans Z-2901 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase YP_360065.1 1093760 D 246194 CDS YP_360066.1 78042839 3727093 1094616..1095149 1 NC_007503.1 identified by similarity to GB:AAK00236.1; heterodisulfide reductase subunit C 1095149 3727093 CHY_1228 Carboxydothermus hydrogenoformans Z-2901 heterodisulfide reductase subunit C YP_360066.1 1094616 D 246194 CDS YP_360067.1 78042755 3726927 1095149..1096006 1 NC_007503.1 identified by similarity to GP:3378542; match to protein family HMM PF02754; succinate dehydrogenase subunit C 1096006 3726927 CHY_1229 Carboxydothermus hydrogenoformans Z-2901 succinate dehydrogenase subunit C YP_360067.1 1095149 D 246194 CDS YP_360068.1 78043298 3728603 1096028..1098709 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992; (Fe-S)-binding protein 1098709 3728603 CHY_1230 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360068.1 1096028 D 246194 CDS YP_360069.1 78043653 3728455 1098709..1099068 1 NC_007503.1 identified by match to protein family HMM PF02662; hydrogenase, methyl-violgen-reducing type subunit delta 1099068 3728455 CHY_1231 Carboxydothermus hydrogenoformans Z-2901 hydrogenase, methyl-violgen-reducing type subunit delta YP_360069.1 1098709 D 246194 CDS YP_360070.1 78044586 3727707 1099095..1099763 1 NC_007503.1 identified by similarity to GB:AAM30135.1; hypothetical protein 1099763 3727707 CHY_1232 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360070.1 1099095 D 246194 CDS YP_360071.1 78044792 3727917 1099808..1100677 1 NC_007503.1 identified by match to protein family HMM PF02219; methylenetetrahydrofolate reductase 1100677 3727917 CHY_1233 Carboxydothermus hydrogenoformans Z-2901 methylenetetrahydrofolate reductase YP_360071.1 1099808 D 246194 CDS YP_360072.1 78043027 3726442 1100749..1101597 1 NC_007503.1 identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphate phosphatase 1101597 3726442 CHY_1234 Carboxydothermus hydrogenoformans Z-2901 histidinol phosphate phosphatase YP_360072.1 1100749 D 246194 CDS YP_360073.1 78043275 3728718 1101597..1102334 1 NC_007503.1 identified by similarity to SP:P39787; match to protein family HMM PF04271; match to protein family HMM TIGR01446; DNA replication protein DnaD 1102334 3728718 CHY_1235 Carboxydothermus hydrogenoformans Z-2901 DNA replication protein DnaD YP_360073.1 1101597 D 246194 CDS YP_360074.1 78044663 3727785 1102344..1103057 1 NC_007503.1 identified by similarity to SP:P06567; primosomal protein DnaI 1103057 3727785 CHY_1236 Carboxydothermus hydrogenoformans Z-2901 primosomal protein DnaI YP_360074.1 1102344 D 246194 CDS YP_360075.1 78042754 3726926 1103112..1104695 1 NC_007503.1 identified by similarity to PIR:A96904; match to protein family HMM PF03109; ABC1 family protein 1104695 3726926 CHY_1237 Carboxydothermus hydrogenoformans Z-2901 ABC1 family protein YP_360075.1 1103112 D 246194 CDS YP_360076.1 78043445 3728908 1104712..1105818 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 1105818 3728908 CHY_1238 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360076.1 1104712 D 246194 CDS YP_360077.1 78044160 3727276 complement(1105811..1106620) 1 NC_007503.1 identified by similarity to GB:AAM23840.1; hypothetical protein 1106620 3727276 CHY_1239 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360077.1 1105811 R 246194 CDS YP_360078.1 78045036 3728161 1106673..1107494 1 NC_007503.1 identified by similarity to SP:O66473; match to protein family HMM PF01564; match to protein family HMM TIGR00417; spermidine synthase 1107494 speE1 3728161 speE1 Carboxydothermus hydrogenoformans Z-2901 spermidine synthase YP_360078.1 1106673 D 246194 CDS YP_360079.1 78043158 3728521 1107569..1107997 1 NC_007503.1 identified by similarity to GB:AAG45131.1; hypothetical protein 1107997 3728521 CHY_1241 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360079.1 1107569 D 246194 CDS YP_360080.1 78044673 3727795 1108001..1108546 1 NC_007503.1 hypothetical protein 1108546 3727795 CHY_1242 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360080.1 1108001 D 246194 CDS YP_360081.1 78044927 3728052 1108553..1109410 1 NC_007503.1 hypothetical protein 1109410 3728052 CHY_1243 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360081.1 1108553 D 246194 CDS YP_360082.1 78044648 3727770 1109358..1109729 1 NC_007503.1 hypothetical protein 1109729 3727770 CHY_1244 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360082.1 1109358 D 246194 CDS YP_360083.1 78044183 3727299 1109741..1110244 1 NC_007503.1 hypothetical protein 1110244 3727299 CHY_1245 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360083.1 1109741 D 246194 CDS YP_360084.1 78045058 3728184 1111236..1111352 1 NC_007503.1 hypothetical protein 1111352 3728184 CHY_1248 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360084.1 1111236 D 246194 CDS YP_360085.1 78044239 3727356 1112594..1113274 1 NC_007503.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome.; ISChy3, orf1 1113274 3727356 CHY_2641 Carboxydothermus hydrogenoformans Z-2901 ISChy3, orf1 YP_360085.1 1112594 D 246194 CDS YP_360086.1 78045016 3728141 1113354..1114700 1 NC_007503.1 identified by similarity to SP:P18416; match to protein family HMM PF00665; ISChy3, transposase 1114700 3728141 CHY_2642 Carboxydothermus hydrogenoformans Z-2901 ISChy3, transposase YP_360086.1 1113354 D 246194 CDS YP_360087.1 78044232 3727349 1114703..1115506 1 NC_007503.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome.; ISChy3, orf3 1115506 3727349 CHY_2643 Carboxydothermus hydrogenoformans Z-2901 ISChy3, orf3 YP_360087.1 1114703 D 246194 CDS YP_360088.1 78042973 3726542 1116505..1118397 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1118397 3726542 CHY_1254 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360088.1 1116505 D 246194 CDS YP_360089.1 78042792 3726887 1118555..1118857 1 NC_007503.1 identified by similarity to PIR:AD0582; match to protein family HMM PF04292; UxaA family hydrolase 1118857 3726887 CHY_1255 Carboxydothermus hydrogenoformans Z-2901 UxaA family hydrolase YP_360089.1 1118555 D 246194 CDS YP_360090.1 78044495 3727614 1118854..1120011 1 NC_007503.1 identified by similarity to PIR:B90280; match to protein family HMM PF04295; UxaA family hydrolase 1120011 3727614 CHY_1256 Carboxydothermus hydrogenoformans Z-2901 UxaA family hydrolase YP_360090.1 1118854 D 246194 CDS YP_360091.1 78043980 3726215 1120250..1121212 1 NC_007503.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 1121212 3726215 CHY_1257 Carboxydothermus hydrogenoformans Z-2901 2-keto-3-deoxygluconate permease YP_360091.1 1120250 D 246194 CDS YP_360092.1 78042917 3727016 1121419..1122717 1 NC_007503.1 identified by similarity to GB:AAL19126.1; match to protein family HMM PF07005; hypothetical protein 1122717 3727016 CHY_1258 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360092.1 1121419 D 246194 CDS YP_360093.1 78043939 3726406 1122719..1123726 1 NC_007503.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1123726 pdxA 3726406 pdxA Carboxydothermus hydrogenoformans Z-2901 4-hydroxythreonine-4-phosphate dehydrogenase YP_360093.1 1122719 D 246194 CDS YP_360094.1 78044423 3727541 1123987..1124082 1 NC_007503.1 hypothetical protein 1124082 3727541 CHY_1260 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360094.1 1123987 D 246194 CDS YP_360095.1 78043955 3726735 1124161..1124352 1 NC_007503.1 identified by similarity to SP:O32583; match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 1124352 thiS1 3726735 thiS1 Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiS YP_360095.1 1124161 D 246194 CDS YP_360096.1 78043230 3728594 1124385..1125149 1 NC_007503.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1125149 thiG 3728594 thiG Carboxydothermus hydrogenoformans Z-2901 thiazole synthase YP_360096.1 1124385 D 246194 CDS YP_360097.1 78045152 3728278 1125185..1126306 1 NC_007503.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 1126306 thiH 3728278 thiH Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiH YP_360097.1 1125185 D 246194 CDS YP_360098.1 78043264 3728550 1126293..1126898 1 NC_007503.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 1126898 moeB 3728550 moeB Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiF YP_360098.1 1126293 D 246194 CDS YP_360099.1 78044019 3727134 1126918..1127565 1 NC_007503.1 identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 1127565 thiE 3727134 thiE Carboxydothermus hydrogenoformans Z-2901 thiamine-phosphate pyrophosphorylase YP_360099.1 1126918 D 246194 CDS YP_360100.1 78044138 3727254 1127774..1128127 1 NC_007503.1 identified by similarity to GB:BAB79804.1; hypothetical protein 1128127 3727254 CHY_1266 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360100.1 1127774 D 246194 CDS YP_360101.1 78044867 3727992 1128161..1128922 1 NC_007503.1 identified by similarity to SP:P39408; match to protein family HMM PF01026; TatD family hydrolase 1128922 3727992 CHY_1267 Carboxydothermus hydrogenoformans Z-2901 TatD family hydrolase YP_360101.1 1128161 D 246194 CDS YP_360102.1 78045073 3728199 1129126..1130280 1 NC_007503.1 identified by similarity to SP:P23524; match to protein family HMM PF02595; match to protein family HMM TIGR00045; glycerate kinase 1130280 garK 3728199 garK Carboxydothermus hydrogenoformans Z-2901 glycerate kinase YP_360102.1 1129126 D 246194 CDS YP_360103.1 78043154 3728517 1130421..1130513 1 NC_007503.1 hypothetical protein 1130513 3728517 CHY_1269 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360103.1 1130421 D 246194 CDS YP_360104.1 78044488 3727607 1130662..1130754 1 NC_007503.1 hypothetical protein 1130754 3727607 CHY_1270 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360104.1 1130662 D 246194 CDS YP_360105.1 78045222 3728348 1130807..1132060 1 NC_007503.1 identified by match to protein family HMM PF03594; benzoate transporter 1132060 3728348 CHY_1271 Carboxydothermus hydrogenoformans Z-2901 benzoate transporter YP_360105.1 1130807 D 246194 CDS YP_360106.1 78042657 3726321 1132170..1133273 1 NC_007503.1 identified by similarity to PIR:D75419; match to protein family HMM PF00557; proline dipeptidase 1133273 3726321 CHY_1272 Carboxydothermus hydrogenoformans Z-2901 proline dipeptidase YP_360106.1 1132170 D 246194 CDS YP_360107.1 78043361 3728882 1133418..1134203 1 NC_007503.1 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 1134203 3728882 CHY_1273 Carboxydothermus hydrogenoformans Z-2901 IclR family transcriptional regulator YP_360107.1 1133418 D 246194 CDS YP_360108.1 78043263 3728549 1134390..1135007 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 1135007 3728549 CHY_1274 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360108.1 1134390 D 246194 CDS YP_360109.1 78043099 3726378 1135008..1136447 1 NC_007503.1 hypothetical protein 1136447 3726378 CHY_1275 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360109.1 1135008 D 246194 CDS YP_360110.1 78044712 3727834 1136583..1137422 1 NC_007503.1 identified by similarity to SP:P39666; match to protein family HMM PF01729; match to protein family HMM PF02749; nicotinate-nucleotide pyrophosphorylase 1137422 3727834 CHY_1276 Carboxydothermus hydrogenoformans Z-2901 nicotinate-nucleotide pyrophosphorylase YP_360110.1 1136583 D 246194 CDS YP_360111.1 78044017 3727132 1137412..1138302 1 NC_007503.1 identified by match to protein family HMM PF00994; molybdopterin binding domain-containing protein 1138302 3727132 CHY_1277 Carboxydothermus hydrogenoformans Z-2901 molybdopterin binding domain-containing protein YP_360111.1 1137412 D 246194 CDS YP_360112.1 78042951 3726813 1138326..1139114 1 NC_007503.1 identified by similarity to GP:45682; match to protein family HMM PF01689; hydratase/decarboxylase 1139114 3726813 CHY_1278 Carboxydothermus hydrogenoformans Z-2901 hydratase/decarboxylase YP_360112.1 1138326 D 246194 CDS YP_360113.1 78042871 3727086 1139150..1140049 1 NC_007503.1 catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 1140049 mhpF 3727086 mhpF Carboxydothermus hydrogenoformans Z-2901 acetaldehyde dehydrogenase YP_360113.1 1139150 D 246194 CDS YP_360114.1 78044450 3727568 1140042..1141052 1 NC_007503.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 1141052 mhpE 3727568 mhpE Carboxydothermus hydrogenoformans Z-2901 4-hydroxy-2-ketovalerate aldolase YP_360114.1 1140042 D 246194 CDS YP_360115.1 78042656 3726320 1141276..1142103 1 NC_007503.1 identified by similarity to PIR:AC1967; match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR00268; hypothetical protein 1142103 3726320 CHY_1281 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360115.1 1141276 D 246194 CDS YP_360116.1 78044726 3727849 1142096..1142857 1 NC_007503.1 identified by similarity to PIR:E96995; hypothetical protein 1142857 3727849 CHY_1282 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360116.1 1142096 D 246194 CDS YP_360117.1 78045057 3728183 1142854..1144059 1 NC_007503.1 identified by similarity to SP:Q9X059; match to protein family HMM PF01969; match to protein family HMM TIGR00299; hypothetical protein 1144059 3728183 CHY_1283 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360117.1 1142854 D 246194 CDS YP_360118.1 78043157 3728520 1144103..1144642 1 NC_007503.1 identified by similarity to SP:P40881; match to protein family HMM PF00132; hexapeptide transferase 1144642 3728520 CHY_1284 Carboxydothermus hydrogenoformans Z-2901 hexapeptide transferase YP_360118.1 1144103 D 246194 CDS YP_360119.1 78043191 3728710 1144529..1144642 1 NC_007503.1 hypothetical protein 1144642 3728710 CHY_1285 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360119.1 1144529 D 246194 CDS YP_360120.1 78044448 3727566 complement(1144925..1145044) 1 NC_007503.1 hypothetical protein 1145044 3727566 CHY_1286 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360120.1 1144925 R 246194 CDS YP_360121.1 78043724 3728469 1145357..1145497 1 NC_007503.1 hypothetical protein 1145497 3728469 CHY_1287 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360121.1 1145357 D 246194 CDS YP_360122.1 78042981 3726551 1145592..1146773 1 NC_007503.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 1146773 3726551 CHY_1288 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA acetyltransferase YP_360122.1 1145592 D 246194 CDS YP_360123.1 78044634 3727755 1146803..1147096 1 NC_007503.1 identified by similarity to PIR:AD0582; match to protein family HMM PF04292; UxaA family hydrolase 1147096 3727755 CHY_1289 Carboxydothermus hydrogenoformans Z-2901 UxaA family hydrolase YP_360123.1 1146803 D 246194 CDS YP_360124.1 78044218 3727335 1147120..1148280 1 NC_007503.1 identified by similarity to GB:AAL19601.1; match to protein family HMM PF04295; UxaA family hydrolase 1148280 3727335 CHY_1290 Carboxydothermus hydrogenoformans Z-2901 UxaA family hydrolase YP_360124.1 1147120 D 246194 CDS YP_360125.1 78042775 3726869 complement(1148436..1149671) 1 NC_007503.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISChy1, transposase 1149671 3726869 CHY_1291 Carboxydothermus hydrogenoformans Z-2901 ISChy1, transposase YP_360125.1 1148436 R 246194 CDS YP_360126.1 78044398 3727516 1150035..1150889 1 NC_007503.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase 1150889 hbd1 3727516 hbd1 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydrogenase YP_360126.1 1150035 D 246194 CDS YP_360127.1 78043648 3728450 1150993..1151766 1 NC_007503.1 identified by similarity to SP:P52046; match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase 1151766 crt1 3728450 crt1 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydratase YP_360127.1 1150993 D 246194 CDS YP_360128.1 78043044 3726420 1152151..1152438 1 NC_007503.1 identified by similarity to OMNI:NTL03CP0914; hypothetical protein 1152438 3726420 CHY_1294 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360128.1 1152151 D 246194 CDS YP_360129.1 78044941 3728066 1152508..1153014 1 NC_007503.1 hypothetical protein 1153014 3728066 CHY_1295 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360129.1 1152508 D 246194 CDS YP_360130.1 78043540 3726726 1153091..1154650 1 NC_007503.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 1154650 3726726 CHY_1296 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_360130.1 1153091 D 246194 CDS YP_360131.1 78042639 3727125 1155204..1156580 1 NC_007503.1 identified by similarity to SP:P52075; match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD 1156580 glcD 3727125 glcD Carboxydothermus hydrogenoformans Z-2901 glycolate oxidase subunit GlcD YP_360131.1 1155204 D 246194 CDS YP_360132.1 78044838 3727963 1156588..1157700 1 NC_007503.1 identified by match to protein family HMM PF01565; glycolate oxidase subunit GlcE 1157700 glcE 3727963 glcE Carboxydothermus hydrogenoformans Z-2901 glycolate oxidase subunit GlcE YP_360132.1 1156588 D 246194 CDS YP_360133.1 78044496 3727615 1157710..1158948 1 NC_007503.1 identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit 1158948 glcF 3727615 glcF Carboxydothermus hydrogenoformans Z-2901 glycolate oxidase, iron-sulfur subunit YP_360133.1 1157710 D 246194 CDS YP_360134.1 78044973 3728098 complement(1158958..1159083) 1 NC_007503.1 hypothetical protein 1159083 3728098 CHY_1300 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360134.1 1158958 R 246194 CDS YP_360135.1 78043354 3728875 1159123..1160190 1 NC_007503.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate transporter subunit DctP 1160190 3728875 CHY_1301 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctP YP_360135.1 1159123 D 246194 CDS YP_360136.1 78043624 3726752 1160322..1160825 1 NC_007503.1 identified by similarity to GB:AAL29685.1; match to protein family HMM PF04290; TRAP dicarboxylate transporter subunit DctQ 1160825 3726752 CHY_1302 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctQ YP_360136.1 1160322 D 246194 CDS YP_360137.1 78043046 3726422 1160849..1162126 1 NC_007503.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786; TRAP dicarboxylate transporter subunit DctM 1162126 3726422 CHY_1303 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctM YP_360137.1 1160849 D 246194 CDS YP_360138.1 78044248 3727365 1162311..1162982 1 NC_007503.1 identified by similarity to PIR:F72214; hypothetical protein 1162982 3727365 CHY_1304 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360138.1 1162311 D 246194 CDS YP_360139.1 78044386 3727504 1162987..1163379 1 NC_007503.1 hypothetical protein 1163379 3727504 CHY_1305 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360139.1 1162987 D 246194 CDS YP_360140.1 78043034 3726449 1163399..1164148 1 NC_007503.1 identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase oxidoreductase 1164148 3726449 CHY_1306 Carboxydothermus hydrogenoformans Z-2901 short chain dehydrogenase/reductase oxidoreductase YP_360140.1 1163399 D 246194 CDS YP_360141.1 78043661 3728463 1164148..1165185 1 NC_007503.1 identified by similarity to SP:Q06004; match to protein family HMM PF00107; sorbitol dehydrogenase 1165185 gutB 3728463 gutB Carboxydothermus hydrogenoformans Z-2901 sorbitol dehydrogenase YP_360141.1 1164148 D 246194 CDS YP_360142.1 78044568 3727687 1165204..1166232 1 NC_007503.1 hypothetical protein 1166232 3727687 CHY_1308 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360142.1 1165204 D 246194 CDS YP_360143.1 78044047 3727162 1166256..1166804 1 NC_007503.1 identified by match to protein family HMM PF00994; molybdopterin binding domain-containing protein 1166804 3727162 CHY_1309 Carboxydothermus hydrogenoformans Z-2901 molybdopterin binding domain-containing protein YP_360143.1 1166256 D 246194 CDS YP_360144.1 78044600 3727721 1166820..1167038 1 NC_007503.1 identified by match to protein family HMM PF00037; keto/oxoacid ferredoxin oxidoreductase subunit delta 1167038 3727721 CHY_1310 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit delta YP_360144.1 1166820 D 246194 CDS YP_360145.1 78042939 3726999 1167031..1168113 1 NC_007503.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 1168113 3726999 CHY_1311 Carboxydothermus hydrogenoformans Z-2901 2-ketoisovalerate ferredoxin reductase YP_360145.1 1167031 D 246194 CDS YP_360146.1 78043485 3728812 1168103..1168840 1 NC_007503.1 identified by match to protein family HMM PF02775; keto/oxoacid ferredoxin oxidoreductase subunit beta 1168840 3728812 CHY_1312 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit beta YP_360146.1 1168103 D 246194 CDS YP_360147.1 78044403 3727521 1168846..1169400 1 NC_007503.1 identified by match to protein family HMM PF01558; match to protein family HMM TIGR02175; keto/oxoacid ferredoxin oxidoreductase subunit gamma 1169400 3727521 CHY_1313 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit gamma YP_360147.1 1168846 D 246194 CDS YP_360148.1 78043633 3726761 1169432..1170907 1 NC_007503.1 identified by similarity to SP:P55792; match to protein family HMM PF03241; gamma-aminobutyrate metabolism dehydratase/isomerase 1170907 abfD 3726761 abfD Carboxydothermus hydrogenoformans Z-2901 gamma-aminobutyrate metabolism dehydratase/isomerase YP_360148.1 1169432 D 246194 CDS YP_360149.1 78044533 3727652 1170915..1171298 1 NC_007503.1 hypothetical protein 1171298 3727652 CHY_1315 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360149.1 1170915 D 246194 CDS YP_360150.1 78044300 3727417 1171247..1172608 1 NC_007503.1 hypothetical protein 1172608 3727417 CHY_1316 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360150.1 1171247 D 246194 CDS YP_360151.1 78043517 3726566 1172649..1173305 1 NC_007503.1 hypothetical protein 1173305 3726566 CHY_1317 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360151.1 1172649 D 246194 CDS YP_360152.1 78043934 3726401 1173289..1175058 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; sigma-54-dependent transcriptional regulator 1175058 3726401 CHY_1318 Carboxydothermus hydrogenoformans Z-2901 sigma-54-dependent transcriptional regulator YP_360152.1 1173289 D 246194 CDS YP_360153.1 78044740 3727863 1175367..1176389 1 NC_007503.1 identified by match to protein family HMM PF01070; FMN-dependent family dehydrogenase 1176389 3727863 CHY_1319 Carboxydothermus hydrogenoformans Z-2901 FMN-dependent family dehydrogenase YP_360153.1 1175367 D 246194 CDS YP_360154.1 78043161 3728680 1176484..1177398 1 NC_007503.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase 1177398 dapA2 3728680 dapA2 Carboxydothermus hydrogenoformans Z-2901 dihydrodipicolinate synthase YP_360154.1 1176484 D 246194 CDS YP_360155.1 78043907 3726530 1177528..1178805 1 NC_007503.1 identified by match to protein family HMM PF02040; arsenic transporter family protein 1178805 3726530 CHY_1321 Carboxydothermus hydrogenoformans Z-2901 arsenic transporter family protein YP_360155.1 1177528 D 246194 CDS YP_360156.1 78044351 3727469 1178909..1179697 1 NC_007503.1 identified by match to protein family HMM PF01689; hydratase/decarboxylase 1179697 3727469 CHY_1322 Carboxydothermus hydrogenoformans Z-2901 hydratase/decarboxylase YP_360156.1 1178909 D 246194 CDS YP_360157.1 78042819 3726836 1179972..1181117 1 NC_007503.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 1181117 bcd1 3726836 bcd1 Carboxydothermus hydrogenoformans Z-2901 butyryl-CoA dehydrogenase YP_360157.1 1179972 D 246194 CDS YP_360158.1 78043112 3726333 1181138..1182442 1 NC_007503.1 identified by similarity to SP:P38942; match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase 1182442 cat1 3726333 cat1 Carboxydothermus hydrogenoformans Z-2901 4-hydroxybutyrate CoA-transferase YP_360158.1 1181138 D 246194 CDS YP_360159.1 78045023 3728148 1182464..1183225 1 NC_007503.1 identified by match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1183225 etfB1 3728148 etfB1 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit beta YP_360159.1 1182464 D 246194 CDS YP_360160.1 78043408 3728870 1183238..1184194 1 NC_007503.1 identified by similarity to SP:P94551; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 1184194 etfA1 3728870 etfA1 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit alpha YP_360160.1 1183238 D 246194 CDS YP_360161.1 78044753 3727877 1184270..1186318 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur-binding reductase 1186318 3727877 CHY_1327 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-binding reductase YP_360161.1 1184270 D 246194 CDS YP_360162.1 78044198 3727315 1186591..1187694 1 NC_007503.1 identified by similarity to SP:P81535; match to protein family HMM PF00557; proline dipeptidase 1187694 3727315 CHY_1328 Carboxydothermus hydrogenoformans Z-2901 proline dipeptidase YP_360162.1 1186591 D 246194 CDS YP_360163.1 78044746 3727870 1188182..1189951 1 NC_007503.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde ferredoxin oxidoreductase 1189951 aor2 3727870 aor2 Carboxydothermus hydrogenoformans Z-2901 tungsten-containing aldehyde ferredoxin oxidoreductase YP_360163.1 1188182 D 246194 CDS YP_360164.1 78044366 3727484 complement(1189931..1191211) 1 NC_007503.1 hypothetical protein 1191211 3727484 CHY_1331 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360164.1 1189931 R 246194 CDS YP_360165.1 78043647 3728449 1190119..1190232 1 NC_007503.1 hypothetical protein 1190232 3728449 CHY_1330 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360165.1 1190119 D 246194 CDS YP_360166.1 78042909 3727047 complement(1191130..1192239) 1 NC_007503.1 identified by similarity to PIR:AB1492; match to protein family HMM PF06032; hypothetical protein 1192239 3727047 CHY_1332 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360166.1 1191130 R 246194 CDS YP_360167.1 78042948 3727008 complement(1192248..1193816) 1 NC_007503.1 identified by similarity to SP:Q46802; match to protein family HMM PF00158; match to protein family HMM TIGR01199; sigma-54-dependent transcriptional regulator 1193816 3727008 CHY_1333 Carboxydothermus hydrogenoformans Z-2901 sigma-54-dependent transcriptional regulator YP_360167.1 1192248 R 246194 CDS YP_360168.1 78043069 3726386 complement(1193903..1194058) 1 NC_007503.1 hypothetical protein 1194058 3726386 CHY_1334 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360168.1 1193903 R 246194 CDS YP_360169.1 78045013 3728138 1194060..1195385 1 NC_007503.1 identified by similarity to SP:P25525; match to protein family HMM PF02133; cytosine/purines uracil thiamine allantoin permease 1195385 3728138 CHY_1335 Carboxydothermus hydrogenoformans Z-2901 cytosine/purines uracil thiamine allantoin permease YP_360169.1 1194060 D 246194 CDS YP_360170.1 78044454 3727573 1195389..1196471 1 NC_007503.1 identified by match to protein family HMM PF06032; hypothetical protein 1196471 3727573 CHY_1336 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360170.1 1195389 D 246194 CDS YP_360171.1 78043863 3726682 1196487..1198037 1 NC_007503.1 identified by match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase 1198037 3726682 CHY_1337 Carboxydothermus hydrogenoformans Z-2901 hydantoinase/oxoprolinase YP_360171.1 1196487 D 246194 CDS YP_360172.1 78042937 3726997 1198063..1198791 1 NC_007503.1 identified by similarity to SP:Q00924; match to protein family HMM PF01177; hydantoin racemase 1198791 hyuE 3726997 hyuE Carboxydothermus hydrogenoformans Z-2901 hydantoin racemase YP_360172.1 1198063 D 246194 CDS YP_360173.1 78044675 3727797 1198967..1199356 1 NC_007503.1 identified by similarity to SP:P08337; match to protein family HMM PF00293; mutator mutT protein 1199356 mutT 3727797 mutT Carboxydothermus hydrogenoformans Z-2901 mutator mutT protein YP_360173.1 1198967 D 246194 CDS YP_360174.1 78045051 3728177 1199484..1200128 1 NC_007503.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1200128 adk 3728177 adk Carboxydothermus hydrogenoformans Z-2901 adenylate kinase YP_360174.1 1199484 D 246194 CDS YP_360175.1 78043498 3726605 1200171..1200878 1 NC_007503.1 identified by similarity to OMNI:NTL01OI1982; hypothetical protein 1200878 3726605 CHY_1341 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360175.1 1200171 D 246194 CDS YP_360176.1 78043801 3726619 1200868..1201674 1 NC_007503.1 identified by match to protein family HMM PF00896; phosphorylase 2 protein 1201674 3726619 CHY_1342 Carboxydothermus hydrogenoformans Z-2901 phosphorylase 2 protein YP_360176.1 1200868 D 246194 CDS YP_360177.1 78044373 3727491 1201771..1204065 1 NC_007503.1 identified by match to protein family HMM PF00069; match to protein family HMM PF07714; serine/threonine protein kinase 1204065 3727491 CHY_1343 Carboxydothermus hydrogenoformans Z-2901 serine/threonine protein kinase YP_360177.1 1201771 D 246194 CDS YP_360178.1 78045227 3728353 1204046..1204867 1 NC_007503.1 identified by match to protein family HMM PF03358; FMN reductase 1204867 3728353 CHY_1344 Carboxydothermus hydrogenoformans Z-2901 FMN reductase YP_360178.1 1204046 D 246194 CDS YP_360179.1 78043171 3728690 1205125..1206063 1 NC_007503.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1206063 ddl 3728690 ddl Carboxydothermus hydrogenoformans Z-2901 D-alanine--D-alanine ligase YP_360179.1 1205125 D 246194 CDS YP_360180.1 78044143 3727259 1206071..1207711 1 NC_007503.1 hypothetical protein 1207711 3727259 CHY_1347 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360180.1 1206071 D 246194 CDS YP_360181.1 78042630 3727116 1207726..1207896 1 NC_007503.1 hypothetical protein 1207896 3727116 CHY_1348 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360181.1 1207726 D 246194 CDS YP_360182.1 78043322 3728647 1207920..1209005 1 NC_007503.1 identified by match to protein family HMM PF00365; match to protein family HMM TIGR02483; phosphofructokinase 1209005 3728647 CHY_1349 Carboxydothermus hydrogenoformans Z-2901 phosphofructokinase YP_360182.1 1207920 D 246194 CDS YP_360183.1 78044080 3727196 1209161..1210306 1 NC_007503.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 1210306 bcd2 3727196 bcd2 Carboxydothermus hydrogenoformans Z-2901 butyryl-CoA dehydrogenase YP_360183.1 1209161 D 246194 CDS YP_360184.1 78045205 3728331 1210352..1211650 1 NC_007503.1 identified by similarity to SP:P38942; match to protein family HMM PF02550; 4-hydroxybutyrate CoA-transferase 1211650 cat2 3728331 cat2 Carboxydothermus hydrogenoformans Z-2901 4-hydroxybutyrate CoA-transferase YP_360184.1 1210352 D 246194 CDS YP_360185.1 78045170 3728296 1211680..1212441 1 NC_007503.1 identified by similarity to SP:P94550; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1212441 etfB2 3728296 etfB2 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit beta YP_360185.1 1211680 D 246194 CDS YP_360186.1 78043026 3726441 1212454..1213410 1 NC_007503.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 1213410 etfA2 3726441 etfA2 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit alpha YP_360186.1 1212454 D 246194 CDS YP_360187.1 78044790 3727915 1213422..1213556 1 NC_007503.1 hypothetical protein 1213556 3727915 CHY_1354 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360187.1 1213422 D 246194 CDS YP_360188.1 78044570 3727690 1213541..1214722 1 NC_007503.1 identified by similarity to SP:P76461; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 1214722 atoB 3727690 atoB Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA acetyltransferase YP_360188.1 1213541 D 246194 CDS YP_360189.1 78043620 3728831 1214759..1215277 1 NC_007503.1 identified by similarity to OMNI:NTL01TT1568; match to protein family HMM PF04463; hypothetical protein 1215277 3728831 CHY_1356 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360189.1 1214759 D 246194 CDS YP_360190.1 78044301 3727418 1215237..1216115 1 NC_007503.1 identified by match to protein family HMM PF04055; oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 1216115 3727418 CHY_1357 Carboxydothermus hydrogenoformans Z-2901 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase YP_360190.1 1215237 D 246194 CDS YP_360191.1 78043874 3726693 1216130..1216768 1 NC_007503.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD family hydrolase 1216768 3726693 CHY_1358 Carboxydothermus hydrogenoformans Z-2901 HAD family hydrolase YP_360191.1 1216130 D 246194 CDS YP_360192.1 78043131 3728669 1216772..1218493 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1218493 3728669 CHY_1359 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360192.1 1216772 D 246194 CDS YP_360193.1 78044888 3728013 1218522..1219076 1 NC_007503.1 identified by similarity to SP:P28628; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1219076 lepB 3728013 lepB Carboxydothermus hydrogenoformans Z-2901 signal peptidase I YP_360193.1 1218522 D 246194 CDS YP_360194.1 78043467 3728851 complement(1219181..1219663) 1 NC_007503.1 identified by similarity to SP:P33925; cytochrome C domain-containing protein 1219663 3728851 CHY_1361 Carboxydothermus hydrogenoformans Z-2901 cytochrome C domain-containing protein YP_360194.1 1219181 R 246194 CDS YP_360195.1 78042916 3727015 complement(1219741..1220943) 1 NC_007503.1 identified by similarity to SP:P19499; match to protein family HMM PF00037; match to protein family HMM PF04422; match to protein family HMM PF04432; coenzyme F420 hydrogenase subunit beta 1220943 3727015 CHY_1362 Carboxydothermus hydrogenoformans Z-2901 coenzyme F420 hydrogenase subunit beta YP_360195.1 1219741 R 246194 CDS YP_360196.1 78044654 3727776 complement(1221007..1222026) 1 NC_007503.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate transporter subunit DctP 1222026 3727776 CHY_1363 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctP YP_360196.1 1221007 R 246194 CDS YP_360197.1 78043387 3728772 complement(1222109..1223404) 1 NC_007503.1 identified by match to protein family HMM PF00597; match to protein family HMM PF06808; match to protein family HMM TIGR00786; TRAP dicarboxylate transporter subunit DctM 1223404 3728772 CHY_1364 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctM YP_360197.1 1222109 R 246194 CDS YP_360198.1 78043374 3728759 complement(1223406..1223957) 1 NC_007503.1 identified by match to protein family HMM PF04290; TRAP dicarboxylate transporter subunit DctQ 1223957 3728759 CHY_1365 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctQ YP_360198.1 1223406 R 246194 CDS YP_360199.1 78042693 3726982 complement(1223973..1224992) 1 NC_007503.1 identified by similarity to SP:P37735; match to protein family HMM PF03480; match to protein family HMM TIGR00787; TRAP dicarboxylate transporter subunit DctP 1224992 3726982 CHY_1366 Carboxydothermus hydrogenoformans Z-2901 TRAP dicarboxylate transporter subunit DctP YP_360199.1 1223973 R 246194 CDS YP_360200.1 78044906 3728031 complement(1225091..1225753) 1 NC_007503.1 identified by match to protein family HMM PF00072; C4-dicarboxylate response regulator 1225753 3728031 CHY_1367 Carboxydothermus hydrogenoformans Z-2901 C4-dicarboxylate response regulator YP_360200.1 1225091 R 246194 CDS YP_360201.1 78045180 3728306 complement(1227434..1228672) 1 NC_007503.1 identified by similarity to SP:P16468; match to protein family HMM PF00390; match to protein family HMM PF03949; NAD-dependent malic enzyme 1228672 3728306 CHY_1369 Carboxydothermus hydrogenoformans Z-2901 NAD-dependent malic enzyme YP_360201.1 1227434 R 246194 CDS YP_360202.1 78044506 3727625 complement(1228696..1229487) 1 NC_007503.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1229487 sdhB 3727625 sdhB Carboxydothermus hydrogenoformans Z-2901 succinate dehydrogenase iron-sulfur subunit YP_360202.1 1228696 R 246194 CDS YP_360203.1 78043670 3726701 complement(1229494..1229838) 1 NC_007503.1 hypothetical protein 1229838 3726701 CHY_1371 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360203.1 1229494 R 246194 CDS YP_360204.1 78045136 3728262 complement(1229854..1230273) 1 NC_007503.1 identified by match to protein family HMM PF01127; hypothetical protein 1230273 3728262 CHY_1372 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360204.1 1229854 R 246194 CDS YP_360205.1 78044117 3727233 complement(1230290..1232008) 1 NC_007503.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1232008 sdhA 3727233 sdhA Carboxydothermus hydrogenoformans Z-2901 succinate dehydrogenase flavoprotein subunit YP_360205.1 1230290 R 246194 CDS YP_360206.1 78044651 3727773 complement(1232030..1232578) 1 NC_007503.1 identified by match to protein family HMM PF05683; match to protein family HMM TIGR00723; fumarate hydratase subunit beta 1232578 3727773 CHY_1374 Carboxydothermus hydrogenoformans Z-2901 fumarate hydratase subunit beta YP_360206.1 1232030 R 246194 CDS YP_360207.1 78042903 3727041 complement(1232591..1233433) 1 NC_007503.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 1233433 3727041 CHY_1375 Carboxydothermus hydrogenoformans Z-2901 fumarate hydratase YP_360207.1 1232591 R 246194 CDS YP_360208.1 78044131 3727247 complement(1233553..1234995) 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1234995 3727247 CHY_1376 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360208.1 1233553 R 246194 CDS YP_360209.1 78043543 3726729 complement(1234967..1235131) 1 NC_007503.1 hypothetical protein 1235131 3726729 CHY_1377 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360209.1 1234967 R 246194 CDS YP_360210.1 78045221 3728347 1235214..1235828 1 NC_007503.1 identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498; LexA repressor 1235828 lexA 3728347 lexA Carboxydothermus hydrogenoformans Z-2901 LexA repressor YP_360210.1 1235214 D 246194 CDS YP_360211.1 78044262 3727379 complement(1235852..1236058) 1 NC_007503.1 hypothetical protein 1236058 3727379 CHY_1379 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360211.1 1235852 R 246194 CDS YP_360212.1 78044766 3727890 complement(1236125..1236361) 1 NC_007503.1 hypothetical protein 1236361 3727890 CHY_1380 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360212.1 1236125 R 246194 CDS YP_360213.1 78043149 3728512 complement(1236365..1236508) 1 NC_007503.1 hypothetical protein 1236508 3728512 CHY_1381 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360213.1 1236365 R 246194 CDS YP_360214.1 78044897 3728022 complement(1236521..1237186) 1 NC_007503.1 identified by similarity to SP:P30962; match to protein family HMM PF01578; heme exporter protein CcmC 1237186 3728022 CHY_1382 Carboxydothermus hydrogenoformans Z-2901 heme exporter protein CcmC YP_360214.1 1236521 R 246194 CDS YP_360215.1 78044304 3727421 complement(1237226..1237903) 1 NC_007503.1 identified by similarity to SP:P29960; match to protein family HMM PF03379; heme exporter protein CcmB 1237903 3727421 CHY_1383 Carboxydothermus hydrogenoformans Z-2901 heme exporter protein CcmB YP_360215.1 1237226 R 246194 CDS YP_360216.1 78043302 3728607 complement(1237900..1238601) 1 NC_007503.1 identified by similarity to SP:P46903; match to protein family HMM PF00005; sodium ABC transporter ATP-binding protein 1238601 3728607 CHY_1384 Carboxydothermus hydrogenoformans Z-2901 sodium ABC transporter ATP-binding protein YP_360216.1 1237900 R 246194 CDS YP_360217.1 78045074 3728200 complement(1238611..1239570) 1 NC_007503.1 hypothetical protein 1239570 3728200 CHY_1385 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360217.1 1238611 R 246194 CDS YP_360218.1 78044526 3727645 complement(1239571..1239948) 1 NC_007503.1 identified by similarity to GB:AAN37247.1; hypothetical protein 1239948 3727645 CHY_1386 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360218.1 1239571 R 246194 CDS YP_360219.1 78044186 3727302 complement(1239948..1241945) 1 NC_007503.1 identified by similarity to SP:P33927; match to protein family HMM PF01578; cytochrome C biogenesis protein 1241945 3727302 CHY_1387 Carboxydothermus hydrogenoformans Z-2901 cytochrome C biogenesis protein YP_360219.1 1239948 R 246194 CDS YP_360220.1 78043730 3728475 complement(1241964..1242377) 1 NC_007503.1 cytochrome C biogenesis protein 1242377 3728475 CHY_1388 Carboxydothermus hydrogenoformans Z-2901 cytochrome C biogenesis protein YP_360220.1 1241964 R 246194 CDS YP_360221.1 78042622 3727108 complement(1242382..1243305) 1 NC_007503.1 hypothetical protein 1243305 3727108 CHY_1389 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360221.1 1242382 R 246194 CDS YP_360222.1 78043759 3726792 complement(1243405..1244625) 1 NC_007503.1 identified by similarity to PIR:C69888; match to protein family HMM PF01053; match to protein family HMM PF06838; hypothetical protein 1244625 3726792 CHY_1390 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360222.1 1243405 R 246194 CDS YP_360223.1 78044056 3727172 complement(1244646..1245536) 1 NC_007503.1 identified by similarity to SP:P27643; match to protein family HMM PF00004; stage V sporulation protein K 1245536 spoVK 3727172 spoVK Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein K YP_360223.1 1244646 R 246194 CDS YP_360224.1 78044631 3727752 1245610..1246956 1 NC_007503.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; match to protein family HMM PF04748; N-acetylmuramoyl-L-alanine amidase 1246956 3727752 CHY_1392 Carboxydothermus hydrogenoformans Z-2901 N-acetylmuramoyl-L-alanine amidase YP_360224.1 1245610 D 246194 CDS YP_360225.1 78043417 3728782 complement(1246953..1247210) 1 NC_007503.1 identified by similarity to SP:P25521; match to protein family HMM PF01423; match to protein family HMM TIGR02383; hfq protein 1247210 hfq 3728782 hfq Carboxydothermus hydrogenoformans Z-2901 hfq protein YP_360225.1 1246953 R 246194 CDS YP_360226.1 78043010 3726463 complement(1247249..1248184) 1 NC_007503.1 identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 1248184 miaA 3726463 miaA Carboxydothermus hydrogenoformans Z-2901 tRNA delta(2)-isopentenylpyrophosphate transferase YP_360226.1 1247249 R 246194 CDS YP_360227.1 78044619 3727740 complement(1248181..1248954) 1 NC_007503.1 identified by similarity to OMNI:NTL01BH2370; hypothetical protein 1248954 3727740 CHY_1395 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360227.1 1248181 R 246194 CDS YP_360228.1 78044214 3727331 complement(1248974..1250710) 1 NC_007503.1 In low GC gram positive bacteria, the DNA mismatch repair system composed of hexA and hexB is the functional equivalent of the mutS/mutL system found in other prokaryotes.; identified by similarity to SP:P49850; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM TIGR00585; DNA mismatch repair protein HexB 1250710 hexB 3727331 hexB Carboxydothermus hydrogenoformans Z-2901 DNA mismatch repair protein HexB YP_360228.1 1248974 R 246194 CDS YP_360229.1 78043130 3728668 complement(1250712..1253237) 1 NC_007503.1 In low GC gram positive bacteria, the DNA mismatch repair system composed of hexA and hexB is the functional equivalent of the mutS/mutL system found in other prokaryotes.; identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein HexA 1253237 hexA 3728668 hexA Carboxydothermus hydrogenoformans Z-2901 DNA mismatch repair protein HexA YP_360229.1 1250712 R 246194 CDS YP_360230.1 78042734 3726945 complement(1253239..1254561) 1 NC_007503.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1254561 miaB 3726945 miaB Carboxydothermus hydrogenoformans Z-2901 (dimethylallyl)adenosine tRNA methylthiotransferase YP_360230.1 1253239 R 246194 CDS YP_360231.1 78044343 3727460 1254646..1254879 1 NC_007503.1 hypothetical protein 1254879 3727460 CHY_1399 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360231.1 1254646 D 246194 CDS YP_360232.1 78044639 3727761 1254870..1255094 1 NC_007503.1 identified by similarity to PIR:T47194; hypothetical protein 1255094 3727761 CHY_1400 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360232.1 1254870 D 246194 CDS YP_360233.1 78045125 3728251 complement(1255080..1255514) 1 NC_007503.1 hypothetical protein 1255514 3728251 CHY_1401 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360233.1 1255080 R 246194 CDS YP_360234.1 78044787 3727912 1255545..1256612 1 NC_007503.1 identified by similarity to GB:AAM23577.1; hypothetical protein 1256612 3727912 CHY_1402 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360234.1 1255545 D 246194 CDS YP_360235.1 78042710 3726960 1256609..1257388 1 NC_007503.1 identified by similarity to GB:AAM23577.1; lipoprotein 1257388 3726960 CHY_1403 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360235.1 1256609 D 246194 CDS YP_360236.1 78043180 3728699 complement(1257371..1258450) 1 NC_007503.1 identified by similarity to SP:P49940; match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 1258450 3728699 CHY_1404 Carboxydothermus hydrogenoformans Z-2901 spore germination protein YP_360236.1 1257371 R 246194 CDS YP_360237.1 78044519 3727638 1258537..1259160 1 NC_007503.1 identified by similarity to SP:Q01463; match to protein family HMM PF03775; match to protein family HMM TIGR01222; septum site-determining protein MinC 1259160 minC 3727638 minC Carboxydothermus hydrogenoformans Z-2901 septum site-determining protein MinC YP_360237.1 1258537 D 246194 CDS YP_360238.1 78045071 3728197 complement(1259157..1259681) 1 NC_007503.1 identified by match to protein family HMM PF00293; mutT/nudix family protein 1259681 3728197 CHY_1406 Carboxydothermus hydrogenoformans Z-2901 mutT/nudix family protein YP_360238.1 1259157 R 246194 CDS YP_360239.1 78042998 3726490 complement(1259694..1260278) 1 NC_007503.1 hypothetical protein 1260278 3726490 CHY_1407 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360239.1 1259694 R 246194 CDS YP_360240.1 78043595 3728748 complement(1260338..1260523) 1 NC_007503.1 hypothetical protein 1260523 3728748 CHY_1408 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360240.1 1260338 R 246194 CDS YP_360241.1 78043355 3728876 1260728..1261696 1 NC_007503.1 identified by similarity to GB:AAM25019.1; hypothetical protein 1261696 3728876 CHY_1409 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360241.1 1260728 D 246194 CDS YP_360242.1 78043931 3726359 1261708..1262808 1 NC_007503.1 identified by similarity to GB:AAM23610.1; hypothetical protein 1262808 3726359 CHY_1410 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360242.1 1261708 D 246194 CDS YP_360243.1 78044518 3727637 1262823..1263773 1 NC_007503.1 identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase domain-containing protein 1263773 3727637 CHY_1411 Carboxydothermus hydrogenoformans Z-2901 CoA-substrate-specific enzyme activase domain-containing protein YP_360243.1 1262823 D 246194 CDS YP_360244.1 78043472 3728799 complement(1263727..1265193) 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1265193 3728799 CHY_1412 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_360244.1 1263727 R 246194 CDS YP_360245.1 78044944 3728069 complement(1265186..1265872) 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1265872 3728069 CHY_1413 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_360245.1 1265186 R 246194 CDS YP_360246.1 78044934 3728059 complement(1265980..1266336) 1 NC_007503.1 identified by similarity to SP:Q8R5S3; match to protein family HMM PF02021; hypothetical protein 1266336 3728059 CHY_1414 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360246.1 1265980 R 246194 CDS YP_360247.1 78043184 3728703 complement(1266381..1267811) 1 NC_007503.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01770; proton-translocating NADH-quinone oxidoreductase subunit N 1267811 3728703 CHY_1415 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit N YP_360247.1 1266381 R 246194 CDS YP_360248.1 78043816 3728426 complement(1267812..1269332) 1 NC_007503.1 identified by match to protein family HMM PF00361; match to protein family HMM TIGR01972; proton-translocating NADH-quinone oxidoreductase subunit M 1269332 3728426 CHY_1416 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit M YP_360248.1 1267812 R 246194 CDS YP_360249.1 78044040 3727155 complement(1269332..1271263) 1 NC_007503.1 identified by match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; proton-translocating NADH-quinone oxidoreductase subunit L 1271263 3727155 CHY_1417 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit L YP_360249.1 1269332 R 246194 CDS YP_360250.1 78044627 3727748 complement(1271286..1271594) 1 NC_007503.1 identified by similarity to SP:P50940; match to protein family HMM PF00420; proton-translocating NADH-quinone oxidoreductase subunit K 1271594 3727748 CHY_1418 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit K YP_360250.1 1271286 R 246194 CDS YP_360251.1 78042971 3726540 complement(1271591..1272100) 1 NC_007503.1 identified by similarity to SP:P26523; match to protein family HMM PF00499; proton-translocating NADH-quinone oxidoreductase subunit J 1272100 3726540 CHY_1419 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit J YP_360251.1 1271591 R 246194 CDS YP_360252.1 78043690 3726253 complement(1272093..1272515) 1 NC_007503.1 identified by similarity to SP:Q00236; match to protein family HMM PF00037; match to protein family HMM TIGR01971; proton-translocating NADH-quinone oxidoreductase subunit I 1272515 3726253 CHY_1420 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit I YP_360252.1 1272093 R 246194 CDS YP_360253.1 78044872 3727997 complement(1272521..1273573) 1 NC_007503.1 identified by similarity to SP:P26522; match to protein family HMM PF00146; proton-translocating NADH-quinone oxidoreductase subunit H 1273573 3727997 CHY_1421 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit H YP_360253.1 1272521 R 246194 CDS YP_360254.1 78042696 3726985 complement(1273597..1274694) 1 NC_007503.1 catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit D 1274694 3726985 CHY_1422 Carboxydothermus hydrogenoformans Z-2901 NADH dehydrogenase subunit D YP_360254.1 1273597 R 246194 CDS YP_360255.1 78043379 3728764 complement(1274707..1275138) 1 NC_007503.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1275138 3728764 CHY_1423 Carboxydothermus hydrogenoformans Z-2901 NADH dehydrogenase subunit C YP_360255.1 1274707 R 246194 CDS YP_360256.1 78043958 3726738 complement(1275138..1275638) 1 NC_007503.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1275638 3726738 CHY_1424 Carboxydothermus hydrogenoformans Z-2901 NADH dehydrogenase subunit B YP_360256.1 1275138 R 246194 CDS YP_360257.1 78042776 3726870 complement(1275629..1275985) 1 NC_007503.1 identified by similarity to SP:Q9ZDH1; match to protein family HMM PF00507; proton-translocating NADH-quinone oxidoreductase subunit A 1275985 3726870 CHY_1425 Carboxydothermus hydrogenoformans Z-2901 proton-translocating NADH-quinone oxidoreductase subunit A YP_360257.1 1275629 R 246194 CDS YP_360258.1 78044826 3727951 complement(1276066..1276761) 1 NC_007503.1 identified by similarity to SP:O31744; match to protein family HMM PF01351; ribonuclease HII 1276761 rnhB 3727951 rnhB Carboxydothermus hydrogenoformans Z-2901 ribonuclease HII YP_360258.1 1276066 R 246194 CDS YP_360259.1 78043127 3728665 complement(1276807..1277637) 1 NC_007503.1 identified by similarity to GB:AAP10758.1; match to protein family HMM PF01926; match to protein family HMM TIGR00650; GTP-binding protein 1277637 3728665 CHY_1427 Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein YP_360259.1 1276807 R 246194 CDS YP_360260.1 78043257 3728543 complement(1277712..1278053) 1 NC_007503.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1278053 rplS 3728543 rplS Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L19 YP_360260.1 1277712 R 246194 CDS YP_360261.1 78043290 3728733 complement(1278155..1278727) 1 NC_007503.1 identified by similarity to GB:AAL94488.1; hypothetical protein 1278727 3728733 CHY_1429 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360261.1 1278155 R 246194 CDS YP_360262.1 78045134 3728260 complement(1278730..1279491) 1 NC_007503.1 identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 1279491 trmD 3728260 trmD Carboxydothermus hydrogenoformans Z-2901 tRNA (guanine-N1)-methyltransferase YP_360262.1 1278730 R 246194 CDS YP_360263.1 78044794 3727919 complement(1279491..1280009) 1 NC_007503.1 identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA-processing protein RimM 1280009 rimM 3727919 rimM Carboxydothermus hydrogenoformans Z-2901 16S rRNA-processing protein RimM YP_360263.1 1279491 R 246194 CDS YP_360264.1 78043842 3726583 complement(1280051..1280278) 1 NC_007503.1 identified by similarity to SP:Q97I96; hypothetical protein 1280278 3726583 CHY_1432 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360264.1 1280051 R 246194 CDS YP_360265.1 78044705 3727827 complement(1280297..1280557) 1 NC_007503.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1280557 rpsP 3727827 rpsP Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S16 YP_360265.1 1280297 R 246194 CDS YP_360266.1 78042676 3728502 complement(1280594..1281934) 1 NC_007503.1 identified by similarity to SP:P37105; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 1281934 ffh 3728502 ffh Carboxydothermus hydrogenoformans Z-2901 signal recognition particle protein YP_360266.1 1280594 R 246194 CDS YP_360267.1 78044288 3727405 complement(1281949..1282290) 1 NC_007503.1 identified by match to protein family HMM PF04297; match to protein family HMM TIGR01199; DNA-binding protein 1282290 3727405 CHY_1435 Carboxydothermus hydrogenoformans Z-2901 DNA-binding protein YP_360267.1 1281949 R 246194 CDS YP_360268.1 78043849 3726590 1282379..1283752 1 NC_007503.1 identified by similarity to SP:P42588; match to protein family HMM PF00202; class III aminotransferase 1283752 3726590 CHY_1436 Carboxydothermus hydrogenoformans Z-2901 class III aminotransferase YP_360268.1 1282379 D 246194 CDS YP_360269.1 78043572 3726291 complement(1283742..1284914) 1 NC_007503.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02475; match to protein family HMM PF03602; hypothetical protein 1284914 3726291 CHY_1437 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360269.1 1283742 R 246194 CDS YP_360270.1 78042858 3727073 complement(1284920..1286221) 1 NC_007503.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase 1286221 3727073 CHY_1438 Carboxydothermus hydrogenoformans Z-2901 amidohydrolase YP_360270.1 1284920 R 246194 CDS YP_360271.1 78043941 3726408 complement(1286228..1286860) 1 NC_007503.1 identified by similarity to SP:P11550; match to protein family HMM PF00596; L-fuculose phosphate aldolase 1286860 fucA1 3726408 fucA1 Carboxydothermus hydrogenoformans Z-2901 L-fuculose phosphate aldolase YP_360271.1 1286228 R 246194 CDS YP_360272.1 78043521 3726570 complement(1286876..1288111) 1 NC_007503.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1288111 ahcY 3726570 ahcY Carboxydothermus hydrogenoformans Z-2901 S-adenosyl-L-homocysteine hydrolase YP_360272.1 1286876 R 246194 CDS YP_360273.1 78043229 3728593 complement(1288137..1288934) 1 NC_007503.1 Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 1288934 mtaP 3728593 mtaP Carboxydothermus hydrogenoformans Z-2901 5'-methylthioadenosine phosphorylase YP_360273.1 1288137 R 246194 CDS YP_360274.1 78043121 3728659 complement(1288961..1289872) 1 NC_007503.1 identified by similarity to SP:P51835; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY 1289872 ftsY 3728659 ftsY Carboxydothermus hydrogenoformans Z-2901 signal recognition particle-docking protein FtsY YP_360274.1 1288961 R 246194 CDS YP_360275.1 78045010 3728135 complement(1289906..1293463) 1 NC_007503.1 identified by similarity to SP:P51834; match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1293463 smc 3728135 smc Carboxydothermus hydrogenoformans Z-2901 chromosome segregation protein SMC YP_360275.1 1289906 R 246194 CDS YP_360276.1 78044311 3727428 complement(1293465..1294172) 1 NC_007503.1 identified by similarity to SP:P51833; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 1294172 rnc 3727428 rnc Carboxydothermus hydrogenoformans Z-2901 ribonuclease III YP_360276.1 1293465 R 246194 CDS YP_360277.1 78043553 3726778 complement(1294177..1295415) 1 NC_007503.1 identified by similarity to SP:P73283; match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase 1295415 fabF 3726778 fabF Carboxydothermus hydrogenoformans Z-2901 3-oxoacyl-ACP synthase YP_360277.1 1294177 R 246194 CDS YP_360278.1 78042800 3726856 complement(1295469..1295702) 1 NC_007503.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1295702 acpP 3726856 acpP Carboxydothermus hydrogenoformans Z-2901 acyl carrier protein YP_360278.1 1295469 R 246194 CDS YP_360279.1 78044677 3727799 complement(1295718..1296461) 1 NC_007503.1 identified by similarity to SP:P51831; match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01830; 3-oxoacyl-ACP reductase 1296461 fabG 3727799 fabG Carboxydothermus hydrogenoformans Z-2901 3-oxoacyl-ACP reductase YP_360279.1 1295718 R 246194 CDS YP_360280.1 78043865 3726684 complement(1296463..1297401) 1 NC_007503.1 identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-ACP transacylase 1297401 fabD 3726684 fabD Carboxydothermus hydrogenoformans Z-2901 malonyl CoA-ACP transacylase YP_360280.1 1296463 R 246194 CDS YP_360281.1 78043137 3728675 complement(1297394..1298338) 1 NC_007503.1 identified by similarity to PIR:E95048; match to protein family HMM PF00478; match to protein family HMM PF03060; enoyl-ACP reductase 1298338 fabK 3728675 fabK Carboxydothermus hydrogenoformans Z-2901 enoyl-ACP reductase YP_360281.1 1297394 R 246194 CDS YP_360282.1 78044947 3728072 complement(1298352..1299344) 1 NC_007503.1 identified by similarity to SP:O34746; match to protein family HMM TIGR00747; 3-oxoacyl-ACP synthase 1299344 fabH 3728072 fabH Carboxydothermus hydrogenoformans Z-2901 3-oxoacyl-ACP synthase YP_360282.1 1298352 R 246194 CDS YP_360283.1 78044247 3727364 complement(1299328..1300320) 1 NC_007503.1 identified by similarity to SP:P71018; match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX 1300320 plsX 3727364 plsX Carboxydothermus hydrogenoformans Z-2901 fatty acid/phospholipid synthesis protein PlsX YP_360283.1 1299328 R 246194 CDS YP_360284.1 78044058 3727174 complement(1300323..1300883) 1 NC_007503.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1300883 3727174 CHY_1452 Carboxydothermus hydrogenoformans Z-2901 fatty acid biosynthesis transcriptional regulator YP_360284.1 1300323 R 246194 CDS YP_360285.1 78042787 3726882 complement(1300986..1301162) 1 NC_007503.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1301162 rpmF 3726882 rpmF Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L32 YP_360285.1 1300986 R 246194 CDS YP_360286.1 78043376 3728761 complement(1301166..1301666) 1 NC_007503.1 identified by similarity to PIR:H83972; match to protein family HMM PF02620; hypothetical protein 1301666 3728761 CHY_1454 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360286.1 1301166 R 246194 CDS YP_360287.1 78042887 3727063 complement(1301727..1302923) 1 NC_007503.1 identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase 1302923 ackA 3727063 ackA Carboxydothermus hydrogenoformans Z-2901 acetate kinase YP_360287.1 1301727 R 246194 CDS YP_360288.1 78044760 3727884 complement(1302969..1303973) 1 NC_007503.1 identified by similarity to SP:P39646; match to protein family HMM PF01515; match to protein family HMM TIGR00651; phosphate acetyltransferase 1303973 pta 3727884 pta Carboxydothermus hydrogenoformans Z-2901 phosphate acetyltransferase YP_360288.1 1302969 R 246194 CDS YP_360289.1 78044275 3727392 1304111..1305196 1 NC_007503.1 hypothetical protein 1305196 3727392 CHY_1457 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360289.1 1304111 D 246194 CDS YP_360290.1 78043857 3726676 complement(1305186..1305626) 1 NC_007503.1 identified by similarity to GB:AAM24704.1; hypothetical protein 1305626 3726676 CHY_1458 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360290.1 1305186 R 246194 CDS YP_360291.1 78044695 3727817 complement(1305630..1306118) 1 NC_007503.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1306118 coaD 3727817 coaD Carboxydothermus hydrogenoformans Z-2901 phosphopantetheine adenylyltransferase YP_360291.1 1305630 R 246194 CDS YP_360292.1 78044003 3726238 complement(1306120..1306674) 1 NC_007503.1 identified by similarity to GB:AAM24706.1; match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 1306674 3726238 CHY_1460 Carboxydothermus hydrogenoformans Z-2901 methyltransferase YP_360292.1 1306120 R 246194 CDS YP_360293.1 78044649 3727771 complement(1306819..1307466) 1 NC_007503.1 identified by similarity to PIR:F71176; match to protein family HMM PF03692; hypothetical protein 1307466 3727771 CHY_1461 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360293.1 1306819 R 246194 CDS YP_360294.1 78044279 3727396 1307539..1308513 1 NC_007503.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 1308513 gpr 3727396 gpr Carboxydothermus hydrogenoformans Z-2901 germination protease YP_360294.1 1307539 D 246194 CDS YP_360295.1 78043541 3726727 complement(1308556..1308759) 1 NC_007503.1 identified by similarity to SP:P06551; match to protein family HMM PF00269; small acid-soluble spore protein 1308759 3726727 CHY_1463 Carboxydothermus hydrogenoformans Z-2901 small acid-soluble spore protein YP_360295.1 1308556 R 246194 CDS YP_360296.1 78043395 3728857 complement(1308776..1308988) 1 NC_007503.1 identified by similarity to SP:P04833; match to protein family HMM PF00269; small acid-soluble spore protein 1308988 3728857 CHY_1464 Carboxydothermus hydrogenoformans Z-2901 small acid-soluble spore protein YP_360296.1 1308776 R 246194 CDS YP_360297.1 78042760 3726893 complement(1309058..1309210) 1 NC_007503.1 small acid-soluble spore protein 1309210 3726893 CHY_1465 Carboxydothermus hydrogenoformans Z-2901 small acid-soluble spore protein YP_360297.1 1309058 R 246194 CDS YP_360298.1 78044866 3727991 1309225..1309344 1 NC_007503.1 hypothetical protein 1309344 3727991 CHY_1466 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360298.1 1309225 D 246194 CDS YP_360299.1 78044136 3727252 1309341..1309469 1 NC_007503.1 hypothetical protein 1309469 3727252 CHY_1467 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360299.1 1309341 D 246194 CDS YP_360300.1 78043676 3726707 complement(1309484..1311517) 1 NC_007503.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1311517 recG 3726707 recG Carboxydothermus hydrogenoformans Z-2901 ATP-dependent DNA helicase RecG YP_360300.1 1309484 R 246194 CDS YP_360301.1 78044163 3727279 1311653..1311841 1 NC_007503.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1311841 rpmB 3727279 rpmB Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L28 YP_360301.1 1311653 D 246194 CDS YP_360302.1 78042987 3726479 complement(1311899..1312759) 1 NC_007503.1 identified by similarity to SP:P45803; match to protein family HMM PF01430; heat shock protein HSP33 1312759 3726479 CHY_1470 Carboxydothermus hydrogenoformans Z-2901 heat shock protein HSP33 YP_360302.1 1311899 R 246194 CDS YP_360303.1 78045236 3728362 complement(1312765..1313310) 1 NC_007503.1 identified by similarity to GB:AAM23945.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphodiesterase 1313310 3728362 CHY_1471 Carboxydothermus hydrogenoformans Z-2901 phosphodiesterase YP_360303.1 1312765 R 246194 CDS YP_360304.1 78044703 3727825 complement(1313326..1313784) 1 NC_007503.1 identified by similarity to SP:P11998; match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase 1313784 ribH 3727825 ribH Carboxydothermus hydrogenoformans Z-2901 6,7-dimethyl-8-ribityllumazine synthase YP_360304.1 1313326 R 246194 CDS YP_360305.1 78043761 3726794 complement(1313803..1315008) 1 NC_007503.1 identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00505; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1315008 ribBA 3726794 ribBA Carboxydothermus hydrogenoformans Z-2901 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_360305.1 1313803 R 246194 CDS YP_360306.1 78043525 3726574 complement(1315028..1315669) 1 NC_007503.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1315669 ribE 3726574 ribE Carboxydothermus hydrogenoformans Z-2901 riboflavin synthase subunit alpha YP_360306.1 1315028 R 246194 CDS YP_360307.1 78043574 3726293 complement(1315671..1316756) 1 NC_007503.1 identified by similarity to SP:P17618; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 1316756 ribD 3726293 ribD Carboxydothermus hydrogenoformans Z-2901 riboflavin biosynthesis protein RibD YP_360307.1 1315671 R 246194 CDS YP_360308.1 78043975 3726210 complement(1317011..1317670) 1 NC_007503.1 identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 1317670 rpe 3726210 rpe Carboxydothermus hydrogenoformans Z-2901 ribulose-phosphate 3-epimerase YP_360308.1 1317011 R 246194 CDS YP_360309.1 78042965 3726827 complement(1317672..1318544) 1 NC_007503.1 identified by similarity to GB:AAO35795.1; match to protein family HMM PF03193; match to protein family HMM TIGR00157; GTP-binding protein 1318544 3726827 CHY_1477 Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein YP_360309.1 1317672 R 246194 CDS YP_360310.1 78042841 3727095 complement(1318549..1320381) 1 NC_007503.1 identified by similarity to SP:Q8R9T6; match to protein family HMM PF00069; match to protein family HMM PF03793; serine/threonine protein kinase 1320381 3727095 CHY_1478 Carboxydothermus hydrogenoformans Z-2901 serine/threonine protein kinase YP_360310.1 1318549 R 246194 CDS YP_360311.1 78044484 3727603 complement(1320378..1321121) 1 NC_007503.1 identified by match to protein family HMM PF00481; serine/threonine protein phosphatase 1321121 3727603 CHY_1479 Carboxydothermus hydrogenoformans Z-2901 serine/threonine protein phosphatase YP_360311.1 1320378 R 246194 CDS YP_360312.1 78045218 3728344 complement(1321124..1322152) 1 NC_007503.1 identified by similarity to GB:AAO35792.1; match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein 1322152 3728344 CHY_1480 Carboxydothermus hydrogenoformans Z-2901 radical SAM protein YP_360312.1 1321124 R 246194 CDS YP_360313.1 78042686 3726975 complement(1322167..1323489) 1 NC_007503.1 identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 1323489 sun 3726975 sun Carboxydothermus hydrogenoformans Z-2901 sun protein YP_360313.1 1322167 R 246194 CDS YP_360314.1 78042832 3726849 complement(1323499..1323990) 1 NC_007503.1 identified by similarity to PIR:H75216; hypothetical protein 1323990 3726849 CHY_1482 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360314.1 1323499 R 246194 CDS YP_360315.1 78043011 3726464 complement(1323984..1324910) 1 NC_007503.1 identified by similarity to SP:P23882; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 1324910 fmt 3726464 fmt Carboxydothermus hydrogenoformans Z-2901 methionyl-tRNA formyltransferase YP_360315.1 1323984 R 246194 CDS YP_360316.1 78044307 3727424 complement(1324915..1325373) 1 NC_007503.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1325373 def 3727424 def Carboxydothermus hydrogenoformans Z-2901 peptide deformylase YP_360316.1 1324915 R 246194 CDS YP_360317.1 78043791 3726648 complement(1325386..1327542) 1 NC_007503.1 identified by similarity to SP:P94461; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595; primosomal protein N' 1327542 priA 3726648 priA Carboxydothermus hydrogenoformans Z-2901 primosomal protein N' YP_360317.1 1325386 R 246194 CDS YP_360318.1 78043104 3726325 complement(1327580..1328779) 1 NC_007503.1 identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1328779 coaBC 3726325 coaBC Carboxydothermus hydrogenoformans Z-2901 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_360318.1 1327580 R 246194 CDS YP_360319.1 78045232 3728358 complement(1328796..1329005) 1 NC_007503.1 identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 1329005 rpoZ 3728358 rpoZ Carboxydothermus hydrogenoformans Z-2901 DNA-directed RNA polymerase subunit omega YP_360319.1 1328796 R 246194 CDS YP_360320.1 78044025 3727140 complement(1329002..1329616) 1 NC_007503.1 identified by similarity to SP:P24234; match to protein family HMM PF00625; guanylate kinase 1329616 gmk 3727140 gmk Carboxydothermus hydrogenoformans Z-2901 guanylate kinase YP_360320.1 1329002 R 246194 CDS YP_360321.1 78044490 3727609 complement(1329633..1329896) 1 NC_007503.1 identified by match to protein family HMM PF04025; hypothetical protein 1329896 3727609 CHY_1489 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360321.1 1329633 R 246194 CDS YP_360322.1 78043268 3728554 complement(1329910..1330776) 1 NC_007503.1 identified by similarity to GB:AAM24730.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein 1330776 3728554 CHY_1490 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360322.1 1329910 R 246194 CDS YP_360323.1 78042890 3727066 complement(1330790..1331968) 1 NC_007503.1 identified by similarity to SP:P53001; match to protein family HMM PF00155; aspartate aminotransferase 1331968 aspC 3727066 aspC Carboxydothermus hydrogenoformans Z-2901 aspartate aminotransferase YP_360323.1 1330790 R 246194 CDS YP_360324.1 78045045 3728171 complement(1332037..1333209) 1 NC_007503.1 catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 1333209 3728171 CHY_1492 Carboxydothermus hydrogenoformans Z-2901 LL-diaminopimelate aminotransferase YP_360324.1 1332037 R 246194 CDS YP_360325.1 78044318 3727435 complement(1333243..1334067) 1 NC_007503.1 identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase 1334067 dapF 3727435 dapF Carboxydothermus hydrogenoformans Z-2901 diaminopimelate epimerase YP_360325.1 1333243 R 246194 CDS YP_360326.1 78043586 3728739 1334204..1335955 1 NC_007503.1 identified by similarity to GB:AAM73699.1; match to protein family HMM PF05670; match to protein family HMM PF05833; fibronectin/fibrinogen-binding protein 1335955 3728739 CHY_1494 Carboxydothermus hydrogenoformans Z-2901 fibronectin/fibrinogen-binding protein YP_360326.1 1334204 D 246194 CDS YP_360327.1 78043163 3728682 complement(1335886..1336461) 1 NC_007503.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1336461 pyrE 3728682 pyrE Carboxydothermus hydrogenoformans Z-2901 orotate phosphoribosyltransferase YP_360327.1 1335886 R 246194 CDS YP_360328.1 78045030 3728155 complement(1336439..1337161) 1 NC_007503.1 identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 1337161 pyrF 3728155 pyrF Carboxydothermus hydrogenoformans Z-2901 orotidine 5'-phosphate decarboxylase YP_360328.1 1336439 R 246194 CDS YP_360329.1 78042999 3726491 complement(1337154..1338077) 1 NC_007503.1 identified by similarity to SP:P25996; match to protein family HMM PF01180; match to protein family HMM TIGR01037; dihydroorotate dehydrogenase catalytic subunit 1338077 pyrD 3726491 pyrD Carboxydothermus hydrogenoformans Z-2901 dihydroorotate dehydrogenase catalytic subunit YP_360329.1 1337154 R 246194 CDS YP_360330.1 78043852 3726593 complement(1338074..1338841) 1 NC_007503.1 identified by similarity to SP:P25983; match to protein family HMM PF00175; match to protein family HMM PF00970; dihydroorotate dehydrogenase electron transfer subunit 1338841 pyrK 3726593 pyrK Carboxydothermus hydrogenoformans Z-2901 dihydroorotate dehydrogenase electron transfer subunit YP_360330.1 1338074 R 246194 CDS YP_360331.1 78044442 3727560 complement(1338853..1342047) 1 NC_007503.1 identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit 1342047 carB 3727560 carB Carboxydothermus hydrogenoformans Z-2901 carbamoyl-phosphate synthase large subunit YP_360331.1 1338853 R 246194 CDS YP_360332.1 78042709 3726959 complement(1342040..1343128) 1 NC_007503.1 identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit 1343128 carA 3726959 carA Carboxydothermus hydrogenoformans Z-2901 carbamoyl-phosphate synthase small subunit YP_360332.1 1342040 R 246194 CDS YP_360333.1 78043256 3728542 complement(1343130..1344422) 1 NC_007503.1 identified by similarity to SP:P25995; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase 1344422 pyrC 3728542 pyrC Carboxydothermus hydrogenoformans Z-2901 dihydroorotase YP_360333.1 1343130 R 246194 CDS YP_360334.1 78042712 3726962 complement(1344406..1345344) 1 NC_007503.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; aspartate carbamoyltransferase 1345344 pyrB 3726962 pyrB Carboxydothermus hydrogenoformans Z-2901 aspartate carbamoyltransferase YP_360334.1 1344406 R 246194 CDS YP_360335.1 78043509 3726558 complement(1345444..1345995) 1 NC_007503.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1345995 pyrR 3726558 pyrR Carboxydothermus hydrogenoformans Z-2901 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_360335.1 1345444 R 246194 CDS YP_360336.1 78044127 3727243 1346203..1346664 1 NC_007503.1 identified by similarity to PIR:AC2463; hypothetical protein 1346664 3727243 CHY_1504 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360336.1 1346203 D 246194 CDS YP_360337.1 78044742 3727865 complement(1346661..1347578) 1 NC_007503.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase A 1347578 3727865 CHY_1505 Carboxydothermus hydrogenoformans Z-2901 ribosomal large subunit pseudouridine synthase A YP_360337.1 1346661 R 246194 CDS YP_360338.1 78043389 3728774 complement(1347584..1348018) 1 NC_007503.1 identified by similarity to SP:Q45479; match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 1348018 lspA 3728774 lspA Carboxydothermus hydrogenoformans Z-2901 signal peptidase II YP_360338.1 1347584 R 246194 CDS YP_360339.1 78044164 3727280 complement(1348036..1348677) 1 NC_007503.1 identified by similarity to OMNI:NTL03PA04724; transcriptional regulator 1348677 3727280 CHY_1507 Carboxydothermus hydrogenoformans Z-2901 transcriptional regulator YP_360339.1 1348036 R 246194 CDS YP_360340.1 78044894 3728019 complement(1348701..1348982) 1 NC_007503.1 identified by similarity to GB:AAM24777.1; hypothetical protein 1348982 3728019 CHY_1508 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360340.1 1348701 R 246194 CDS YP_360341.1 78043631 3726759 complement(1349020..1350378) 1 NC_007503.1 identified by match to protein family HMM PF05167; hypothetical protein 1350378 3726759 CHY_1509 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360341.1 1349020 R 246194 CDS YP_360342.1 78042961 3726823 complement(1350390..1350665) 1 NC_007503.1 ACT domain-containing protein; hypothetical protein 1350665 3726823 CHY_1510 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360342.1 1350390 R 246194 CDS YP_360343.1 78043746 3726272 complement(1350750..1351613) 1 NC_007503.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1351613 secF 3726272 secF Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecF YP_360343.1 1350750 R 246194 CDS YP_360344.1 78044509 3727628 complement(1351626..1352852) 1 NC_007503.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1352852 secD 3727628 secD Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecD YP_360344.1 1351626 R 246194 CDS YP_360345.1 78045213 3728339 complement(1352922..1353581) 1 NC_007503.1 identified by similarity to GB:AAO35504.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1353581 3728339 CHY_1513 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_360345.1 1352922 R 246194 CDS YP_360346.1 78043255 3728638 complement(1353603..1353881) 1 NC_007503.1 identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC 1353881 yajC 3728638 yajC Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit YajC YP_360346.1 1353603 R 246194 CDS YP_360347.1 78044870 3727995 complement(1353935..1355050) 1 NC_007503.1 identified by similarity to SP:Q54177; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase 1355050 tgt 3727995 tgt Carboxydothermus hydrogenoformans Z-2901 queuine tRNA-ribosyltransferase YP_360347.1 1353935 R 246194 CDS YP_360348.1 78044043 3727158 complement(1355062..1356078) 1 NC_007503.1 identified by similarity to SP:O32054; match to protein family HMM PF02547; match to protein family HMM TIGR00113; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1356078 queA 3727158 queA Carboxydothermus hydrogenoformans Z-2901 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_360348.1 1355062 R 246194 CDS YP_360349.1 78043900 3726523 complement(1356088..1357440) 1 NC_007503.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669; stage II sporulation protein D 1357440 3726523 CHY_1517 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein D YP_360349.1 1356088 R 246194 CDS YP_360350.1 78044125 3727241 complement(1357388..1358221) 1 NC_007503.1 identified by similarity to GB:AAM23421.1; hypothetical protein 1358221 3727241 CHY_1518 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360350.1 1357388 R 246194 CDS YP_360351.1 78043723 3728468 complement(1358224..1358862) 1 NC_007503.1 Heat shock-induced; RNA polymerase sigma factor SigI 1358862 3728468 CHY_1519 Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma factor SigI YP_360351.1 1358224 R 246194 CDS YP_360352.1 78044145 3727261 complement(1358913..1359128) 1 NC_007503.1 identified by similarity to GB:AAN51377.1; hypothetical protein 1359128 3727261 CHY_1520 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360352.1 1358913 R 246194 CDS YP_360353.1 78043015 3726468 complement(1359132..1359668) 1 NC_007503.1 identified by similarity to PIR:F72338; match to protein family HMM PF02677; hypothetical protein 1359668 3726468 CHY_1521 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360353.1 1359132 R 246194 CDS YP_360354.1 78045225 3728351 complement(1359679..1360698) 1 NC_007503.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1360698 ruvB 3728351 ruvB Carboxydothermus hydrogenoformans Z-2901 Holliday junction DNA helicase RuvB YP_360354.1 1359679 R 246194 CDS YP_360355.1 78044333 3727450 complement(1360720..1361307) 1 NC_007503.1 identified by match to protein family HMM PF00633; match to protein family HMM PF01330; match to protein family HMM TIGR00084; Holliday junction DNA helicase RuvA 1361307 ruvA 3727450 ruvA Carboxydothermus hydrogenoformans Z-2901 Holliday junction DNA helicase RuvA YP_360355.1 1360720 R 246194 CDS YP_360356.1 78043886 3726509 complement(1361304..1361780) 1 NC_007503.1 identified by match to protein family HMM PF02075; match to protein family HMM TIGR00228; crossover junction endodeoxyribonuclease RuvC 1361780 ruvC 3726509 ruvC Carboxydothermus hydrogenoformans Z-2901 crossover junction endodeoxyribonuclease RuvC YP_360356.1 1361304 R 246194 CDS YP_360357.1 78043311 3728616 complement(1361825..1362559) 1 NC_007503.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 1362559 3728616 CHY_1525 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360357.1 1361825 R 246194 CDS YP_360358.1 78042774 3726907 complement(1362583..1363314) 1 NC_007503.1 identified by match to protein family HMM PF02540; match to protein family HMM PF06508; match to protein family HMM TIGR00552; NAD+ synthetase 1363314 nadE 3726907 nadE Carboxydothermus hydrogenoformans Z-2901 NAD+ synthetase YP_360358.1 1362583 R 246194 CDS YP_360359.1 78044831 3727956 complement(1363314..1364219) 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1364219 3727956 CHY_1527 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_360359.1 1363314 R 246194 CDS YP_360360.1 78044197 3727314 complement(1364231..1365826) 1 NC_007503.1 identified by similarity to GB:AAM24711.1; match to protein family HMM PF02734; DAK2 domain-containing protein 1365826 3727314 CHY_1528 Carboxydothermus hydrogenoformans Z-2901 DAK2 domain-containing protein YP_360360.1 1364231 R 246194 CDS YP_360361.1 78043050 3726426 complement(1365830..1366666) 1 NC_007503.1 identified by similarity to GB:AAP09166.1; match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 1366666 3726426 CHY_1529 Carboxydothermus hydrogenoformans Z-2901 degV family protein YP_360361.1 1365830 R 246194 CDS YP_360362.1 78044783 3727907 1366844..1367086 1 NC_007503.1 hypothetical protein 1367086 3727907 CHY_1530 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360362.1 1366844 D 246194 CDS YP_360363.1 78044539 3727658 complement(1367083..1367778) 1 NC_007503.1 identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A 1367778 rsuA 3727658 rsuA Carboxydothermus hydrogenoformans Z-2901 ribosomal small subunit pseudouridine synthase A YP_360363.1 1367083 R 246194 CDS YP_360364.1 78044041 3727156 complement(1367768..1368703) 1 NC_007503.1 identified by match to protein family HMM PF01464; transglycosylase 1368703 3727156 CHY_1532 Carboxydothermus hydrogenoformans Z-2901 transglycosylase YP_360364.1 1367768 R 246194 CDS YP_360365.1 78044613 3727734 complement(1368800..1369717) 1 NC_007503.1 identified by similarity to PIR:A69361; match to protein family HMM PF02653; sugar ABC transporter permease 1369717 3727734 CHY_1533 Carboxydothermus hydrogenoformans Z-2901 sugar ABC transporter permease YP_360365.1 1368800 R 246194 CDS YP_360366.1 78045032 3728157 complement(1369720..1370829) 1 NC_007503.1 identified by similarity to PIR:A95098; match to protein family HMM PF02653; sugar ABC transporter permease 1370829 3728157 CHY_1534 Carboxydothermus hydrogenoformans Z-2901 sugar ABC transporter permease YP_360366.1 1369720 R 246194 CDS YP_360367.1 78043591 3728744 complement(1370829..1372352) 1 NC_007503.1 identified by similarity to GB:AAP27657.1; match to protein family HMM PF00005; sugar ABC transporter ATP-binding protein 1372352 3728744 CHY_1535 Carboxydothermus hydrogenoformans Z-2901 sugar ABC transporter ATP-binding protein YP_360367.1 1370829 R 246194 CDS YP_360368.1 78044299 3727416 complement(1372491..1373558) 1 NC_007503.1 identified by match to protein family HMM PF02608; basic membrane protein family protein 1373558 3727416 CHY_1536 Carboxydothermus hydrogenoformans Z-2901 basic membrane protein family protein YP_360368.1 1372491 R 246194 CDS YP_360369.1 78044855 3727980 complement(1373739..1374737) 1 NC_007503.1 identified by similarity to SP:P42034; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 1374737 hypE 3727980 hypE Carboxydothermus hydrogenoformans Z-2901 hydrogenase expression/formation protein HypE YP_360369.1 1373739 R 246194 CDS YP_360370.1 78043142 3728505 complement(1374748..1375824) 1 NC_007503.1 identified by similarity to SP:P24192; match to protein family HMM PF01924; hydrogenase expression/formation protein HypD 1375824 hypD 3728505 hypD Carboxydothermus hydrogenoformans Z-2901 hydrogenase expression/formation protein HypD YP_360370.1 1374748 R 246194 CDS YP_360371.1 78043362 3728883 complement(1375815..1376030) 1 NC_007503.1 identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone hypC 1376030 hypC 3728883 hypC Carboxydothermus hydrogenoformans Z-2901 hydrogenase assembly chaperone hypC YP_360371.1 1375815 R 246194 CDS YP_360372.1 78043515 3726564 complement(1376037..1378301) 1 NC_007503.1 identified by similarity to SP:P30131; match to protein family HMM PF00708; match to protein family HMM PF00814; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; hydrogenase maturation protein HypF 1378301 hypF 3726564 hypF Carboxydothermus hydrogenoformans Z-2901 hydrogenase maturation protein HypF YP_360372.1 1376037 R 246194 CDS YP_360373.1 78044645 3727767 complement(1378302..1378964) 1 NC_007503.1 identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 1378964 hypB 3727767 hypB Carboxydothermus hydrogenoformans Z-2901 hydrogenase nickel incorporation protein HypB YP_360373.1 1378302 R 246194 CDS YP_360374.1 78044443 3727561 complement(1378967..1379308) 1 NC_007503.1 identified by similarity to SP:P24189; match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 1379308 hypA1 3727561 hypA1 Carboxydothermus hydrogenoformans Z-2901 hydrogenase nickel incorporation protein HypA YP_360374.1 1378967 R 246194 CDS YP_360375.1 78043697 3726260 complement(1379347..1379817) 1 NC_007503.1 identified by similarity to SP:P37182; match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease 1379817 hybD 3726260 hybD Carboxydothermus hydrogenoformans Z-2901 hydrogenase maturation protease YP_360375.1 1379347 R 246194 CDS YP_360376.1 78043732 3728477 complement(1379818..1380447) 1 NC_007503.1 identified by similarity to SP:P31875; match to protein family HMM PF01292; match to protein family HMM TIGR02125; [Ni/Fe] hydrogenase, b-type cytochrome subunit 1380447 3728477 CHY_1544 Carboxydothermus hydrogenoformans Z-2901 [Ni/Fe] hydrogenase, b-type cytochrome subunit YP_360376.1 1379818 R 246194 CDS YP_360377.1 78042990 3726482 complement(1380459..1381886) 1 NC_007503.1 identified by similarity to SP:P21852; match to protein family HMM PF00374; [Ni/Fe] hydrogenase large subunit 1381886 3726482 CHY_1545 Carboxydothermus hydrogenoformans Z-2901 [Ni/Fe] hydrogenase large subunit YP_360377.1 1380459 R 246194 CDS YP_360378.1 78044264 3727381 complement(1381886..1382950) 1 NC_007503.1 identified by match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; [Ni/Fe] hydrogenase small subunit 1382950 3727381 CHY_1546 Carboxydothermus hydrogenoformans Z-2901 [Ni/Fe] hydrogenase small subunit YP_360378.1 1381886 R 246194 CDS YP_360379.1 78043414 3728779 complement(1383255..1385453) 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00158; match to protein family HMM PF02906; match to protein family HMM PF02954; match to protein family HMM PF04060; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1385453 3728779 CHY_1547 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360379.1 1383255 R 246194 CDS YP_360380.1 78044680 3727802 complement(1385446..1386639) 1 NC_007503.1 identified by similarity to GB:AAM24071.1; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00650; GTP-binding protein 1386639 3727802 CHY_1548 Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein YP_360380.1 1385446 R 246194 CDS YP_360381.1 78042688 3726977 complement(1386649..1388022) 1 NC_007503.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1388022 thiH 3726977 thiH Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiH YP_360381.1 1386649 R 246194 CDS YP_360382.1 78043463 3728847 complement(1387982..1388077) 1 NC_007503.1 hypothetical protein 1388077 3728847 CHY_1550 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360382.1 1387982 R 246194 CDS YP_360383.1 78043516 3726565 complement(1388284..1388376) 1 NC_007503.1 hypothetical protein 1388376 3726565 CHY_1551 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360383.1 1388284 R 246194 CDS YP_360384.1 78044909 3728034 complement(1388447..1389133) 1 NC_007503.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126; deoxyribose-phosphate aldolase 1389133 deoC 3728034 deoC Carboxydothermus hydrogenoformans Z-2901 deoxyribose-phosphate aldolase YP_360384.1 1388447 R 246194 CDS YP_360385.1 78043042 3726457 complement(1389133..1389531) 1 NC_007503.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 1389531 cdd 3726457 cdd Carboxydothermus hydrogenoformans Z-2901 cytidine deaminase YP_360385.1 1389133 R 246194 CDS YP_360386.1 78043823 3728433 complement(1389524..1390852) 1 NC_007503.1 identified by similarity to SP:P39142; match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644; pyrimidine-nucleoside phosphorylase 1390852 pdp 3728433 pdp Carboxydothermus hydrogenoformans Z-2901 pyrimidine-nucleoside phosphorylase YP_360386.1 1389524 R 246194 CDS YP_360387.1 78044535 3727654 complement(1390862..1391494) 1 NC_007503.1 identified by similarity to SP:P11550; match to protein family HMM PF00596; L-fuculose phosphate aldolase 1391494 fucA2 3727654 fucA2 Carboxydothermus hydrogenoformans Z-2901 L-fuculose phosphate aldolase YP_360387.1 1390862 R 246194 CDS YP_360388.1 78043183 3728702 complement(1391496..1392527) 1 NC_007503.1 identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524; aIF-2BI family translation initiation factor 1392527 3728702 CHY_1556 Carboxydothermus hydrogenoformans Z-2901 aIF-2BI family translation initiation factor YP_360388.1 1391496 R 246194 CDS YP_360389.1 78042866 3727081 complement(1398203..1398850) 1 NC_007503.1 identified by similarity to GP:28204284; hypothetical protein 1398850 3727081 CHY_1560 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360389.1 1398203 R 246194 CDS YP_360390.1 78043825 3728435 complement(1398892..1400127) 1 NC_007503.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1400127 tyrS 3728435 tyrS Carboxydothermus hydrogenoformans Z-2901 tyrosyl-tRNA synthetase YP_360390.1 1398892 R 246194 CDS YP_360391.1 78043422 3728787 complement(1400167..1400277) 1 NC_007503.1 hypothetical protein 1400277 3728787 CHY_1562 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360391.1 1400167 R 246194 CDS YP_360392.1 78042905 3727043 1400287..1402683 1 NC_007503.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 1402683 3727043 CHY_1563 Carboxydothermus hydrogenoformans Z-2901 1A family penicillin-binding protein YP_360392.1 1400287 D 246194 CDS YP_360393.1 78044071 3727187 complement(1402759..1405092) 1 NC_007503.1 identified by similarity to SP:P94545; match to protein family HMM PF00488; match to protein family HMM PF01713; match to protein family HMM TIGR01069; DNA mismatch repair protein MutS 1405092 mutS2 3727187 mutS2 Carboxydothermus hydrogenoformans Z-2901 DNA mismatch repair protein MutS YP_360393.1 1402759 R 246194 CDS YP_360394.1 78043436 3728899 complement(1405096..1407585) 1 NC_007503.1 identified by match to protein family HMM PF01136; U32 family peptidase 1407585 3728899 CHY_1565 Carboxydothermus hydrogenoformans Z-2901 U32 family peptidase YP_360394.1 1405096 R 246194 CDS YP_360395.1 78042914 3727013 complement(1407631..1408581) 1 NC_007503.1 hypothetical protein 1408581 3727013 CHY_1566 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360395.1 1407631 R 246194 CDS YP_360396.1 78044825 3727950 complement(1408597..1409172) 1 NC_007503.1 identified by match to protein family HMM PF02245; match to protein family HMM TIGR00567; DNA-3-methyladenine glycosylase 1409172 3727950 CHY_1567 Carboxydothermus hydrogenoformans Z-2901 DNA-3-methyladenine glycosylase YP_360396.1 1408597 R 246194 CDS YP_360397.1 78043654 3728456 complement(1409222..1410874) 1 NC_007503.1 identified by match to protein family HMM PF00633; match to protein family HMM PF02811; DNA polymerase X protein 1410874 3728456 CHY_1568 Carboxydothermus hydrogenoformans Z-2901 DNA polymerase X protein YP_360397.1 1409222 R 246194 CDS YP_360398.1 78043056 3726432 complement(1410871..1411125) 1 NC_007503.1 identified by similarity to GB:AAM24888.1; hypothetical protein 1411125 3726432 CHY_1569 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360398.1 1410871 R 246194 CDS YP_360399.1 78045124 3728250 complement(1411188..1413584) 1 NC_007503.1 identified by similarity to SP:P17922; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase subunit beta 1413584 pheT 3728250 pheT Carboxydothermus hydrogenoformans Z-2901 phenylalanyl-tRNA synthetase subunit beta YP_360399.1 1411188 R 246194 CDS YP_360400.1 78044118 3727234 complement(1413598..1414620) 1 NC_007503.1 identified by similarity to SP:P08312; match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468; phenylalanyl-tRNA synthetase subunit alpha 1414620 pheS 3727234 pheS Carboxydothermus hydrogenoformans Z-2901 phenylalanyl-tRNA synthetase subunit alpha YP_360400.1 1413598 R 246194 CDS YP_360401.1 78043415 3728780 complement(1414881..1414994) 1 NC_007503.1 hypothetical protein 1414994 3728780 CHY_1572 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360401.1 1414881 R 246194 CDS YP_360402.1 78042655 3726319 complement(1415038..1415814) 1 NC_007503.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; TrmH family RNA methyltransferase 1415814 3726319 CHY_1573 Carboxydothermus hydrogenoformans Z-2901 TrmH family RNA methyltransferase YP_360402.1 1415038 R 246194 CDS YP_360403.1 78044977 3728102 complement(1415807..1416469) 1 NC_007503.1 identified by similarity to GB:BAA31234.1; match to protein family HMM PF02080; match to protein family HMM PF02254; potassium uptake protein KtrA 1416469 ktrA 3728102 ktrA Carboxydothermus hydrogenoformans Z-2901 potassium uptake protein KtrA YP_360403.1 1415807 R 246194 CDS YP_360404.1 78044109 3727225 complement(1416482..1417837) 1 NC_007503.1 identified by similarity to GB:BAC59168.1; match to protein family HMM PF02386; match to protein family HMM TIGR00933; potassium uptake protein KtrB 1417837 ktrB 3727225 ktrB Carboxydothermus hydrogenoformans Z-2901 potassium uptake protein KtrB YP_360404.1 1416482 R 246194 CDS YP_360405.1 78044004 3726239 complement(1417861..1418214) 1 NC_007503.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1418214 rplT 3726239 rplT Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L20 YP_360405.1 1417861 R 246194 CDS YP_360406.1 78044360 3727478 complement(1418256..1418450) 1 NC_007503.1 identified by similarity to SP:P55874; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 1418450 rpmI 3727478 rpmI Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L35 YP_360406.1 1418256 R 246194 CDS YP_360407.1 78042833 3727087 complement(1418466..1418975) 1 NC_007503.1 identified by similarity to SP:P03000; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 1418975 infC 3727087 infC Carboxydothermus hydrogenoformans Z-2901 translation initiation factor IF-3 YP_360407.1 1418466 R 246194 CDS YP_360408.1 78044971 3728096 complement(1419175..1421079) 1 NC_007503.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1421079 thrS 3728096 thrS Carboxydothermus hydrogenoformans Z-2901 threonyl-tRNA synthetase YP_360408.1 1419175 R 246194 CDS YP_360409.1 78043642 3726770 complement(1421095..1421691) 1 NC_007503.1 identified by similarity to GB:AAL95414.1; hypothetical protein 1421691 3726770 CHY_1580 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360409.1 1421095 R 246194 CDS YP_360410.1 78044192 3727309 complement(1421826..1422629) 1 NC_007503.1 identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha 1422629 trpA 3727309 trpA Carboxydothermus hydrogenoformans Z-2901 tryptophan synthase subunit alpha YP_360410.1 1421826 R 246194 CDS YP_360411.1 78044818 3727943 complement(1422622..1423830) 1 NC_007503.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1423830 trpB 3727943 trpB Carboxydothermus hydrogenoformans Z-2901 tryptophan synthase subunit beta YP_360411.1 1422622 R 246194 CDS YP_360412.1 78042757 3726890 complement(1423811..1424473) 1 NC_007503.1 identified by similarity to SP:Q56320; match to protein family HMM PF00697; N-(5'-phosphoribosyl)anthranilate isomerase 1424473 trpF 3726890 trpF Carboxydothermus hydrogenoformans Z-2901 N-(5'-phosphoribosyl)anthranilate isomerase YP_360412.1 1423811 R 246194 CDS YP_360413.1 78044030 3727145 complement(1424470..1425264) 1 NC_007503.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 1425264 trpC 3727145 trpC Carboxydothermus hydrogenoformans Z-2901 indole-3-glycerol phosphate synthase YP_360413.1 1424470 R 246194 CDS YP_360414.1 78044554 3727673 complement(1425264..1426286) 1 NC_007503.1 identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase 1426286 trpD 3727673 trpD Carboxydothermus hydrogenoformans Z-2901 anthranilate phosphoribosyltransferase YP_360414.1 1425264 R 246194 CDS YP_360415.1 78045118 3728244 complement(1426308..1426877) 1 NC_007503.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II 1426877 trpG 3728244 trpG Carboxydothermus hydrogenoformans Z-2901 para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II YP_360415.1 1426308 R 246194 CDS YP_360416.1 78043043 3726458 complement(1426874..1428337) 1 NC_007503.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I 1428337 trpE 3726458 trpE Carboxydothermus hydrogenoformans Z-2901 anthranilate synthase component I YP_360416.1 1426874 R 246194 CDS YP_360417.1 78044387 3727505 complement(1428359..1429171) 1 NC_007503.1 identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361; phospho-2-dehydro-3-deoxyheptonate aldolase 1429171 aroF3 3727505 aroF3 Carboxydothermus hydrogenoformans Z-2901 phospho-2-dehydro-3-deoxyheptonate aldolase YP_360417.1 1428359 R 246194 CDS YP_360418.1 78044544 3727663 complement(1429350..1430177) 1 NC_007503.1 identified by similarity to GB:AAO36766.1; hypothetical protein 1430177 3727663 CHY_1589 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360418.1 1429350 R 246194 CDS YP_360419.1 78044531 3727650 1430489..1431235 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1431235 3727650 CHY_1591 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_360419.1 1430489 D 246194 CDS YP_360420.1 78045098 3728224 complement(1431207..1432535) 1 NC_007503.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 1432535 3728224 CHY_1592 Carboxydothermus hydrogenoformans Z-2901 MATE efflux family protein YP_360420.1 1431207 R 246194 CDS YP_360421.1 78043579 3726298 complement(1432629..1433096) 1 NC_007503.1 lipoprotein 1433096 3726298 CHY_1593 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360421.1 1432629 R 246194 CDS YP_360422.1 78044625 3727746 complement(1433153..1433647) 1 NC_007503.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1433647 ilvH 3727746 ilvH Carboxydothermus hydrogenoformans Z-2901 acetolactate synthase 3 regulatory subunit YP_360422.1 1433153 R 246194 CDS YP_360423.1 78043741 3726267 1433728..1434387 1 NC_007503.1 identified by match to protein family HMM PF00597; hypothetical protein 1434387 3726267 CHY_1595 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360423.1 1433728 D 246194 CDS YP_360424.1 78045120 3728246 complement(1434426..1434635) 1 NC_007503.1 identified by similarity to PIR:C96993; hypothetical protein 1434635 3728246 CHY_1596 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360424.1 1434426 R 246194 CDS YP_360425.1 78045105 3728231 complement(1434666..1435667) 1 NC_007503.1 identified by similarity to GB:AAP11049.1; match to protein family HMM PF00753; metallo-beta-lactamase 1435667 3728231 CHY_1597 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_360425.1 1434666 R 246194 CDS YP_360426.1 78044931 3728056 complement(1435681..1437726) 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur-binding reductase 1437726 3728056 CHY_1598 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-binding reductase YP_360426.1 1435681 R 246194 CDS YP_360427.1 78043226 3728590 complement(1437802..1438758) 1 NC_007503.1 identified by similarity to SP:P94551; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 1438758 etfA3 3728590 etfA3 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit alpha YP_360427.1 1437802 R 246194 CDS YP_360428.1 78044179 3727295 complement(1438771..1439532) 1 NC_007503.1 identified by similarity to SP:P94550; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 1439532 etfB3 3727295 etfB3 Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit beta YP_360428.1 1438771 R 246194 CDS YP_360429.1 78044907 3728032 complement(1439546..1440328) 1 NC_007503.1 identified by similarity to SP:P52046; match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydratase 1440328 crt2 3728032 crt2 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydratase YP_360429.1 1439546 R 246194 CDS YP_360430.1 78043643 3726771 complement(1440347..1441489) 1 NC_007503.1 identified by similarity to SP:Q06319; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; butyryl-CoA dehydrogenase 1441489 bcd3 3726771 bcd3 Carboxydothermus hydrogenoformans Z-2901 butyryl-CoA dehydrogenase YP_360430.1 1440347 R 246194 CDS YP_360431.1 78044436 3727554 complement(1441523..1442374) 1 NC_007503.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase 1442374 hbd2 3727554 hbd2 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydrogenase YP_360431.1 1441523 R 246194 CDS YP_360432.1 78045186 3728312 complement(1442386..1443567) 1 NC_007503.1 identified by similarity to SP:P45855; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 1443567 3728312 CHY_1604 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA acetyltransferase YP_360432.1 1442386 R 246194 CDS YP_360433.1 78044445 3727563 complement(1443764..1444360) 1 NC_007503.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1444360 3727563 CHY_1605 Carboxydothermus hydrogenoformans Z-2901 TetR family transcriptional regulator YP_360433.1 1443764 R 246194 CDS YP_360434.1 78042924 3727023 complement(1444468..1444569) 1 NC_007503.1 hypothetical protein 1444569 3727023 CHY_1606 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360434.1 1444468 R 246194 CDS YP_360435.1 78043629 3726757 complement(1444620..1446362) 1 NC_007503.1 identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1446362 3726757 CHY_1607 Carboxydothermus hydrogenoformans Z-2901 acyl-CoA dehydrogenase YP_360435.1 1444620 R 246194 CDS YP_360436.1 78044349 3727467 complement(1446384..1447556) 1 NC_007503.1 identified by similarity to SP:P07871; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 1447556 3727467 CHY_1608 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA acetyltransferase YP_360436.1 1446384 R 246194 CDS YP_360437.1 78044975 3728100 complement(1447568..1449991) 1 NC_007503.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; 3-hydroxyacyl-CoA dehydrogenase 1449991 3728100 CHY_1609 Carboxydothermus hydrogenoformans Z-2901 3-hydroxyacyl-CoA dehydrogenase YP_360437.1 1447568 R 246194 CDS YP_360438.1 78042922 3727021 complement(1450110..1450586) 1 NC_007503.1 identified by similarity to SP:Q97HD1; hypothetical protein 1450586 3727021 CHY_1610 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360438.1 1450110 R 246194 CDS YP_360439.1 78042719 3726930 complement(1450652..1453120) 1 NC_007503.1 identified by match to protein family HMM TIGR01905; doubled CXXCH domain-containing protein 1453120 3726930 CHY_1611 Carboxydothermus hydrogenoformans Z-2901 doubled CXXCH domain-containing protein YP_360439.1 1450652 R 246194 CDS YP_360440.1 78044401 3727519 complement(1453264..1453359) 1 NC_007503.1 hypothetical protein 1453359 3727519 CHY_1612 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360440.1 1453264 R 246194 CDS YP_360441.1 78043276 3728719 complement(1453377..1454852) 1 NC_007503.1 identified by similarity to SP:P94547; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 1454852 3728719 CHY_1613 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_360441.1 1453377 R 246194 CDS YP_360442.1 78042780 3726875 complement(1454877..1455527) 1 NC_007503.1 identified by match to protein family HMM PF01810; LysE family translocator protein 1455527 3726875 CHY_1614 Carboxydothermus hydrogenoformans Z-2901 LysE family translocator protein YP_360442.1 1454877 R 246194 CDS YP_360443.1 78043682 3726713 complement(1456230..1457093) 1 NC_007503.1 identified by similarity to SP:P16936; match to protein family HMM PF00491; match to protein family HMM TIGR01230; agmatinase 1457093 3726713 CHY_1620 Carboxydothermus hydrogenoformans Z-2901 agmatinase YP_360443.1 1456230 R 246194 CDS YP_360444.1 78042946 3727006 complement(1457105..1457938) 1 NC_007503.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 1457938 speE2 3727006 speE2 Carboxydothermus hydrogenoformans Z-2901 spermidine synthase YP_360444.1 1457105 R 246194 CDS YP_360445.1 78043582 3726301 complement(1457954..1458415) 1 NC_007503.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase 1458415 3726301 CHY_1622 Carboxydothermus hydrogenoformans Z-2901 pyruvoyl-dependent arginine decarboxylase YP_360445.1 1457954 R 246194 CDS YP_360446.1 78044036 3727151 complement(1458446..1458559) 1 NC_007503.1 hypothetical protein 1458559 3727151 CHY_1623 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360446.1 1458446 R 246194 CDS YP_360447.1 78044068 3727184 complement(1458644..1460362) 1 NC_007503.1 identified by match to protein family HMM PF00723; glycosyl hydrolase 1460362 3727184 CHY_1624 Carboxydothermus hydrogenoformans Z-2901 glycosyl hydrolase YP_360447.1 1458644 R 246194 CDS YP_360448.1 78044823 3727948 complement(1460331..1461707) 1 NC_007503.1 identified by similarity to SP:P27611; match to protein family HMM PF03553; Na+/H+ antiporter 1461707 3727948 CHY_1625 Carboxydothermus hydrogenoformans Z-2901 Na+/H+ antiporter YP_360448.1 1460331 R 246194 CDS YP_360449.1 78042936 3726996 complement(1461685..1462125) 1 NC_007503.1 hypothetical protein 1462125 3726996 CHY_1626 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360449.1 1461685 R 246194 CDS YP_360450.1 78045172 3728298 complement(1462237..1463400) 1 NC_007503.1 identified by match to protein family HMM PF01142; tRNA pseudouridine synthase D family protein 1463400 3728298 CHY_1627 Carboxydothermus hydrogenoformans Z-2901 tRNA pseudouridine synthase D family protein YP_360450.1 1462237 R 246194 CDS YP_360451.1 78044243 3727360 complement(1463453..1464649) 1 NC_007503.1 identified by similarity to SP:P77145; match to protein family HMM PF01566; manganese transporter 1464649 3727360 CHY_1628 Carboxydothermus hydrogenoformans Z-2901 manganese transporter YP_360451.1 1463453 R 246194 CDS YP_360452.1 78045072 3728198 complement(1464725..1466332) 1 NC_007503.1 identified by match to protein family HMM PF00501; AMP-binding protein 1466332 3728198 CHY_1629 Carboxydothermus hydrogenoformans Z-2901 AMP-binding protein YP_360452.1 1464725 R 246194 CDS YP_360453.1 78044287 3727404 complement(1466457..1467269) 1 NC_007503.1 with CbiNQ forms the ABC transporter for cobalt import; cobalt transporter ATP-binding subunit 1467269 cbiO 3727404 cbiO Carboxydothermus hydrogenoformans Z-2901 cobalt transporter ATP-binding subunit YP_360453.1 1466457 R 246194 CDS YP_360454.1 78043867 3726686 complement(1467266..1468075) 1 NC_007503.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease 1468075 3726686 CHY_1631 Carboxydothermus hydrogenoformans Z-2901 cobalt ABC transporter permease YP_360454.1 1467266 R 246194 CDS YP_360455.1 78043125 3728663 complement(1468179..1468454) 1 NC_007503.1 identified by similarity to GB:AAL80654.1; hypothetical protein 1468454 3728663 CHY_1632 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360455.1 1468179 R 246194 CDS YP_360456.1 78043906 3726529 complement(1468444..1469100) 1 NC_007503.1 identified by match to protein family HMM PF01891; cobalamin biosynthesis protein CbiM 1469100 3726529 CHY_1633 Carboxydothermus hydrogenoformans Z-2901 cobalamin biosynthesis protein CbiM YP_360456.1 1468444 R 246194 CDS YP_360457.1 78043567 3726286 complement(1470571..1472862) 1 NC_007503.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 1472862 3726286 CHY_1635 Carboxydothermus hydrogenoformans Z-2901 1A family penicillin-binding protein YP_360457.1 1470571 R 246194 CDS YP_360458.1 78043681 3726712 complement(1472859..1472963) 1 NC_007503.1 hypothetical protein 1472963 3726712 CHY_1636 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360458.1 1472859 R 246194 CDS YP_360459.1 78042992 3726484 complement(1473174..1473656) 1 NC_007503.1 hypothetical protein 1473656 3726484 CHY_1638 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360459.1 1473174 R 246194 CDS YP_360460.1 78045206 3728332 complement(1473802..1474476) 1 NC_007503.1 identified by similarity to OMNI:NTL01NS3189; match to protein family HMM PF02586; hypothetical protein 1474476 3728332 CHY_1639 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360460.1 1473802 R 246194 CDS YP_360461.1 78043319 3728644 1474542..1475108 1 NC_007503.1 identified by similarity to GB:BAC51006.1; hypothetical protein 1475108 3728644 CHY_1640 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360461.1 1474542 D 246194 CDS YP_360462.1 78043718 3726671 complement(1475121..1475711) 1 NC_007503.1 hypothetical protein 1475711 3726671 CHY_1641 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360462.1 1475121 R 246194 CDS YP_360463.1 78044474 3727593 1475876..1476424 1 NC_007503.1 identified by match to protein family HMM PF02632; bioY family protein 1476424 3727593 CHY_1642 Carboxydothermus hydrogenoformans Z-2901 bioY family protein YP_360463.1 1475876 D 246194 CDS YP_360464.1 78043477 3728804 1476417..1476815 1 NC_007503.1 identified by similarity to GB:AAM25542.1; hypothetical protein 1476815 3728804 CHY_1643 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360464.1 1476417 D 246194 CDS YP_360465.1 78043636 3726764 complement(1476804..1477337) 1 NC_007503.1 identified by similarity to SP:P43270; match to protein family HMM PF00565; thermonuclease 1477337 nucH1 3726764 nucH1 Carboxydothermus hydrogenoformans Z-2901 thermonuclease YP_360465.1 1476804 R 246194 CDS YP_360466.1 78044089 3727205 complement(1477318..1477755) 1 NC_007503.1 hypothetical protein 1477755 3727205 CHY_1645 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360466.1 1477318 R 246194 CDS YP_360467.1 78044768 3727892 complement(1477762..1478307) 1 NC_007503.1 identified by match to protein family HMM PF01464; transglycosylase 1478307 3727892 CHY_1646 Carboxydothermus hydrogenoformans Z-2901 transglycosylase YP_360467.1 1477762 R 246194 CDS YP_360468.1 78043213 3728577 complement(1478277..1478897) 1 NC_007503.1 identified by match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 1478897 coaE 3728577 coaE Carboxydothermus hydrogenoformans Z-2901 dephospho-CoA kinase YP_360468.1 1478277 R 246194 CDS YP_360469.1 78043594 3728747 complement(1478905..1479528) 1 NC_007503.1 identified by match to protein family HMM PF02659; hypothetical protein 1479528 3728747 CHY_1648 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360469.1 1478905 R 246194 CDS YP_360470.1 78044278 3727395 complement(1479593..1480384) 1 NC_007503.1 identified by match to protein family HMM PF01149; match to protein family HMM PF06831; match to protein family HMM TIGR00577; formamidopyrimidine-DNA glycosylase 1480384 mutM 3727395 mutM Carboxydothermus hydrogenoformans Z-2901 formamidopyrimidine-DNA glycosylase YP_360470.1 1479593 R 246194 CDS YP_360471.1 78045179 3728305 complement(1480397..1482892) 1 NC_007503.1 identified by similarity to SP:P52026; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I 1482892 polA 3728305 polA Carboxydothermus hydrogenoformans Z-2901 DNA polymerase I YP_360471.1 1480397 R 246194 CDS YP_360472.1 78043703 3726655 complement(1483090..1484265) 1 NC_007503.1 identified by similarity to SP:Q81M86; match to protein family HMM PF00817; DNA polymerase IV 1484265 dinB 3726655 dinB Carboxydothermus hydrogenoformans Z-2901 DNA polymerase IV YP_360472.1 1483090 R 246194 CDS YP_360473.1 78043998 3726233 complement(1484619..1485314) 1 NC_007503.1 identified by match to protein family HMM PF01471; match to protein family HMM PF01510; prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase 1485314 3726233 CHY_1653 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase YP_360473.1 1484619 R 246194 CDS YP_360474.1 78045235 3728361 complement(1485304..1485597) 1 NC_007503.1 identified by similarity to OMNI:EF1485; hypothetical protein 1485597 3728361 CHY_1654 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360474.1 1485304 R 246194 CDS YP_360475.1 78044345 3727462 complement(1485506..1485760) 1 NC_007503.1 hypothetical protein 1485760 3727462 CHY_1655 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360475.1 1485506 R 246194 CDS YP_360476.1 78044492 3727611 complement(1485757..1485996) 1 NC_007503.1 hypothetical protein 1485996 3727611 CHY_1656 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360476.1 1485757 R 246194 CDS YP_360477.1 78042628 3727114 complement(1486036..1488540) 1 NC_007503.1 hypothetical protein 1488540 3727114 CHY_1657 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360477.1 1486036 R 246194 CDS YP_360478.1 78043402 3728864 complement(1488541..1489104) 1 NC_007503.1 hypothetical protein 1489104 3728864 CHY_1658 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360478.1 1488541 R 246194 CDS YP_360479.1 78043491 3726598 complement(1489105..1489428) 1 NC_007503.1 hypothetical protein 1489428 3726598 CHY_1659 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360479.1 1489105 R 246194 CDS YP_360480.1 78044622 3727743 complement(1489432..1490766) 1 NC_007503.1 hypothetical protein 1490766 3727743 CHY_1660 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360480.1 1489432 R 246194 CDS YP_360481.1 78043921 3726349 complement(1490779..1491132) 1 NC_007503.1 hypothetical protein 1491132 3726349 CHY_1661 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360481.1 1490779 R 246194 CDS YP_360482.1 78044672 3727794 complement(1491122..1493500) 1 NC_007503.1 prophage LambdaCh01, tail tape measure protein 1493500 3727794 CHY_1662 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, tail tape measure protein YP_360482.1 1491122 R 246194 CDS YP_360483.1 78042943 3727003 complement(1493501..1493803) 1 NC_007503.1 hypothetical protein 1493803 3727003 CHY_1663 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360483.1 1493501 R 246194 CDS YP_360484.1 78043496 3726603 complement(1493806..1494129) 1 NC_007503.1 identified by similarity to OMNI:NTL01FN2063; hypothetical protein 1494129 3726603 CHY_1664 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360484.1 1493806 R 246194 CDS YP_360485.1 78044432 3727550 complement(1494145..1494552) 1 NC_007503.1 identified by similarity to GB:BAC63640.1; match to protein family HMM TIGR02126; hypothetical protein 1494552 3727550 CHY_1665 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360485.1 1494145 R 246194 CDS YP_360486.1 78044416 3727534 complement(1494566..1494925) 1 NC_007503.1 hypothetical protein 1494925 3727534 CHY_1666 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360486.1 1494566 R 246194 CDS YP_360487.1 78044982 3728107 complement(1494927..1495310) 1 NC_007503.1 hypothetical protein 1495310 3728107 CHY_1667 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360487.1 1494927 R 246194 CDS YP_360488.1 78043405 3728867 complement(1495310..1495603) 1 NC_007503.1 hypothetical protein 1495603 3728867 CHY_1668 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360488.1 1495310 R 246194 CDS YP_360489.1 78043806 3726624 complement(1495600..1496082) 1 NC_007503.1 hypothetical protein 1496082 3726624 CHY_1669 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360489.1 1495600 R 246194 CDS YP_360490.1 78043990 3726225 complement(1496096..1496224) 1 NC_007503.1 hypothetical protein 1496224 3726225 CHY_1670 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360490.1 1496096 R 246194 CDS YP_360491.1 78043107 3726328 complement(1496274..1497224) 1 NC_007503.1 prophage LambdaCh01, coat protein 1497224 3726328 CHY_1671 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, coat protein YP_360491.1 1496274 R 246194 CDS YP_360492.1 78044489 3727608 complement(1497246..1497836) 1 NC_007503.1 prophage LambdaCh01, scaffold protein 1497836 3727608 CHY_1672 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, scaffold protein YP_360492.1 1497246 R 246194 CDS YP_360493.1 78044949 3728074 complement(1497918..1498037) 1 NC_007503.1 hypothetical protein 1498037 3728074 CHY_1673 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360493.1 1497918 R 246194 CDS YP_360494.1 78043793 3726650 complement(1498210..1498596) 1 NC_007503.1 hypothetical protein 1498596 3726650 CHY_1674 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360494.1 1498210 R 246194 CDS YP_360495.1 78045084 3728210 complement(1498651..1499493) 1 NC_007503.1 hypothetical protein 1499493 3728210 CHY_1675 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360495.1 1498651 R 246194 CDS YP_360496.1 78042843 3727097 complement(1499507..1499872) 1 NC_007503.1 hypothetical protein 1499872 3727097 CHY_1676 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360496.1 1499507 R 246194 CDS YP_360497.1 78044407 3727525 complement(1500459..1500764) 1 NC_007503.1 hypothetical protein 1500764 3727525 CHY_1677 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360497.1 1500459 R 246194 CDS YP_360498.1 78044962 3728087 complement(1500754..1502187) 1 NC_007503.1 prophage LambdaCh01, head morphogenesis protein SPP1 1502187 3728087 CHY_1678 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, head morphogenesis protein SPP1 YP_360498.1 1500754 R 246194 CDS YP_360499.1 78043211 3728575 complement(1502187..1503623) 1 NC_007503.1 prophage LambdaCh01, portal protein 1503623 3728575 CHY_1679 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, portal protein YP_360499.1 1502187 R 246194 CDS YP_360500.1 78043214 3728578 complement(1503623..1504885) 1 NC_007503.1 identified by match to protein family HMM PF04466; match to protein family HMM TIGR01547; prophage LambdaCh01, PBSX family terminase large subunit 1504885 3728578 CHY_1680 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, PBSX family terminase large subunit YP_360500.1 1503623 R 246194 CDS YP_360501.1 78044527 3727646 complement(1504872..1505324) 1 NC_007503.1 identified by match to protein family HMM PF03592; prophage LambdaCh01, terminase small subunit 1505324 3727646 CHY_1681 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, terminase small subunit YP_360501.1 1504872 R 246194 CDS YP_360502.1 78045080 3728206 complement(1505365..1505616) 1 NC_007503.1 identified by similarity to GB:AAM99447.1; hypothetical protein 1505616 3728206 CHY_1682 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360502.1 1505365 R 246194 CDS YP_360503.1 78044062 3727178 complement(1506028..1506459) 1 NC_007503.1 identified by match to protein family HMM TIGR01636; prophage LambdaCh01, RinA family protein phage transcriptional regulator 1506459 3727178 CHY_1683 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, RinA family protein phage transcriptional regulator YP_360503.1 1506028 R 246194 CDS YP_360504.1 78044298 3727415 complement(1506602..1507120) 1 NC_007503.1 identified by similarity to SP:P39792; prophage LambdaCh01, recombination protein U 1507120 recU 3727415 recU Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, recombination protein U YP_360504.1 1506602 R 246194 CDS YP_360505.1 78045049 3728175 complement(1507134..1507523) 1 NC_007503.1 hypothetical protein 1507523 3728175 CHY_1685 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360505.1 1507134 R 246194 CDS YP_360506.1 78042804 3726860 complement(1507526..1508290) 1 NC_007503.1 identified by similarity to SP:P07905; hypothetical protein 1508290 3726860 CHY_1686 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360506.1 1507526 R 246194 CDS YP_360507.1 78042980 3726550 complement(1508217..1509260) 1 NC_007503.1 prophage LambdaCh01, replication protein O 1509260 3726550 CHY_1687 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, replication protein O YP_360507.1 1508217 R 246194 CDS YP_360508.1 78043132 3728670 complement(1509288..1510112) 1 NC_007503.1 identified by similarity to PIR:E70506; match to protein family HMM PF07505; hypothetical protein 1510112 3728670 CHY_1688 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360508.1 1509288 R 246194 CDS YP_360509.1 78045078 3728204 complement(1510201..1511082) 1 NC_007503.1 identified by match to protein family HMM PF03837; match to protein family HMM TIGR01913; prophage LambdaCh01, recombination protein Bet 1511082 bet 3728204 bet Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, recombination protein Bet YP_360509.1 1510201 R 246194 CDS YP_360510.1 78043295 3728600 complement(1511097..1511396) 1 NC_007503.1 identified by similarity to GP:13310603; hypothetical protein 1511396 3728600 CHY_1690 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360510.1 1511097 R 246194 CDS YP_360511.1 78044188 3727304 complement(1511631..1511888) 1 NC_007503.1 hypothetical protein 1511888 3727304 CHY_1691 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360511.1 1511631 R 246194 CDS YP_360512.1 78045192 3728318 complement(1511891..1512019) 1 NC_007503.1 hypothetical protein 1512019 3728318 CHY_1692 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360512.1 1511891 R 246194 CDS YP_360513.1 78043434 3728897 complement(1512100..1512330) 1 NC_007503.1 prophage LambdaCh01 DNA binding domain-containing protein 1512330 3728897 CHY_1693 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01 DNA binding domain-containing protein YP_360513.1 1512100 R 246194 CDS YP_360514.1 78043396 3728858 complement(1512348..1512782) 1 NC_007503.1 identified by match to protein family HMM PF01381; prophage LambdaCh01, transcriptional regulator 1512782 3728858 CHY_1694 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, transcriptional regulator YP_360514.1 1512348 R 246194 CDS YP_360515.1 78043037 3726452 complement(1512883..1513086) 1 NC_007503.1 hypothetical protein 1513086 3726452 CHY_1695 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360515.1 1512883 R 246194 CDS YP_360516.1 78044139 3727255 complement(1513101..1513331) 1 NC_007503.1 identified by match to protein family HMM PF01381; prophage LambdaCh01, PBSX family transcriptional regulator 1513331 3727255 CHY_1696 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, PBSX family transcriptional regulator YP_360516.1 1513101 R 246194 CDS YP_360517.1 78043201 3728565 1513491..1514255 1 NC_007503.1 identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381; prophage LambdaCh01, repressor protein 1514255 3728565 CHY_1697 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, repressor protein YP_360517.1 1513491 D 246194 CDS YP_360518.1 78043809 3726627 1514279..1515397 1 NC_007503.1 identified by similarity to SP:P43270; match to protein family HMM PF00565; prophage LambdaCh01 nuclease domain-containing protein 1515397 3726627 CHY_1698 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01 nuclease domain-containing protein YP_360518.1 1514279 D 246194 CDS YP_360519.1 78043424 3728789 1515428..1516243 1 NC_007503.1 identified by similarity to SP:P43270; match to protein family HMM PF00565; prophage LambdaCh01, thermonuclease 1516243 nucH2 3728789 nucH2 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, thermonuclease YP_360519.1 1515428 D 246194 CDS YP_360520.1 78044317 3727434 1516317..1516907 1 NC_007503.1 identified by match to protein family HMM PF04471; prophage LambdaCh01, restriction endonuclease 1516907 3727434 CHY_1700 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, restriction endonuclease YP_360520.1 1516317 D 246194 CDS YP_360521.1 78043569 3726288 1517163..1517810 1 NC_007503.1 identified by similarity to GB:AAN57234.1; hypothetical protein 1517810 3726288 CHY_1701 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360521.1 1517163 D 246194 CDS YP_360522.1 78045014 3728139 1518067..1519182 1 NC_007503.1 identified by match to protein family HMM PF00589; prophage LambdaCh01, site-specific recombinase phage integrase 1519182 3728139 CHY_1702 Carboxydothermus hydrogenoformans Z-2901 prophage LambdaCh01, site-specific recombinase phage integrase YP_360522.1 1518067 D 246194 CDS YP_360523.1 78043904 3726527 complement(1519454..1519945) 1 NC_007503.1 identified by similarity to GB:AAO35655.1; hypothetical protein 1519945 3726527 CHY_1703 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360523.1 1519454 R 246194 CDS YP_360524.1 78043194 3728714 complement(1519995..1520276) 1 NC_007503.1 identified by similarity to OMNI:NTL01BS2756; hypothetical protein 1520276 3728714 CHY_1704 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360524.1 1519995 R 246194 CDS YP_360525.1 78042749 3726921 complement(1520287..1520508) 1 NC_007503.1 hypothetical protein 1520508 3726921 CHY_1705 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360525.1 1520287 R 246194 CDS YP_360526.1 78044458 3727577 complement(1520674..1521066) 1 NC_007503.1 identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1521066 3727577 CHY_1706 Carboxydothermus hydrogenoformans Z-2901 MerR family transcriptional regulator YP_360526.1 1520674 R 246194 CDS YP_360527.1 78045091 3728217 complement(1521171..1521701) 1 NC_007503.1 identified by similarity to OMNI:NTL02MA0402; hypothetical protein 1521701 3728217 CHY_1707 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360527.1 1521171 R 246194 CDS YP_360528.1 78044378 3727496 complement(1521885..1523090) 1 NC_007503.1 identified by similarity to SP:Q04944; match to protein family HMM PF00465; NADH-dependent butanol dehydrogenase 1523090 bdhA 3727496 bdhA Carboxydothermus hydrogenoformans Z-2901 NADH-dependent butanol dehydrogenase YP_360528.1 1521885 R 246194 CDS YP_360529.1 78042795 3726851 1523276..1523836 1 NC_007503.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 1523836 sigZ 3726851 sigZ Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma factor SigZ YP_360529.1 1523276 D 246194 CDS YP_360530.1 78042956 3726818 1523921..1524499 1 NC_007503.1 hypothetical protein 1524499 3726818 CHY_1710 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360530.1 1523921 D 246194 CDS YP_360531.1 78045005 3728130 complement(1524737..1524970) 1 NC_007503.1 identified by similarity to GB:AAL81606.1; match to protein family HMM PF02597; hypothetical protein 1524970 3728130 CHY_1711 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360531.1 1524737 R 246194 CDS YP_360532.1 78043686 3726249 complement(1525272..1527161) 1 NC_007503.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde ferredoxin oxidoreductase 1527161 aor3 3726249 aor3 Carboxydothermus hydrogenoformans Z-2901 tungsten-containing aldehyde ferredoxin oxidoreductase YP_360532.1 1525272 R 246194 CDS YP_360533.1 78042879 3727055 complement(1527174..1527635) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 1527635 3727055 CHY_1713 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360533.1 1527174 R 246194 CDS YP_360534.1 78043386 3728771 complement(1527875..1527997) 1 NC_007503.1 hypothetical protein 1527997 3728771 CHY_1714 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360534.1 1527875 R 246194 CDS YP_360535.1 78044157 3727273 complement(1528092..1528202) 1 NC_007503.1 hypothetical protein 1528202 3727273 CHY_1715 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360535.1 1528092 R 246194 CDS YP_360536.1 78042624 3727110 complement(1528236..1529093) 1 NC_007503.1 identified by similarity to GB:BAB66795.1; match to protein family HMM PF01909; match to protein family HMM PF05168; nucleotidyltransferase/HEPN domain-containing protein 1529093 3727110 CHY_1716 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase/HEPN domain-containing protein YP_360536.1 1528236 R 246194 CDS YP_360537.1 78043861 3726680 complement(1529161..1530192) 1 NC_007503.1 hypothetical protein 1530192 3726680 CHY_1717 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360537.1 1529161 R 246194 CDS YP_360538.1 78044412 3727530 complement(1530302..1533607) 1 NC_007503.1 M protein-like MukB domain-containing protein 1533607 3727530 CHY_1718 Carboxydothermus hydrogenoformans Z-2901 M protein-like MukB domain-containing protein YP_360538.1 1530302 R 246194 CDS YP_360539.1 78044868 3727993 complement(1533597..1534199) 1 NC_007503.1 hypothetical protein 1534199 3727993 CHY_1719 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360539.1 1533597 R 246194 CDS YP_360540.1 78044957 3728082 complement(1534162..1535334) 1 NC_007503.1 hypothetical protein 1535334 3728082 CHY_1720 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360540.1 1534162 R 246194 CDS YP_360541.1 78044919 3728044 1535886..1536113 1 NC_007503.1 identified by similarity to GB:AAM24309.1; match to protein family HMM TIGR01552; prevent-host-death family protein 1536113 3728044 CHY_1721 Carboxydothermus hydrogenoformans Z-2901 prevent-host-death family protein YP_360541.1 1535886 D 246194 CDS YP_360542.1 78043996 3726231 1536097..1536525 1 NC_007503.1 identified by similarity to GB:AAM24310.1; twitching motility protein PilT 1536525 3726231 CHY_1722 Carboxydothermus hydrogenoformans Z-2901 twitching motility protein PilT YP_360542.1 1536097 D 246194 CDS YP_360543.1 78043330 3728655 complement(1536539..1538599) 1 NC_007503.1 identified by similarity to OMNI:NTL01CA3484; match to protein family HMM PF03190; hypothetical protein 1538599 3728655 CHY_1723 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360543.1 1536539 R 246194 CDS YP_360544.1 78043805 3726623 complement(1538648..1539229) 1 NC_007503.1 identified by similarity to GB:AAN58508.1; match to protein family HMM PF02517; CAAX amino terminal protease 1539229 3726623 CHY_1724 Carboxydothermus hydrogenoformans Z-2901 CAAX amino terminal protease YP_360544.1 1538648 R 246194 CDS YP_360545.1 78045215 3728341 complement(1539519..1541669) 1 NC_007503.1 hypothetical protein 1541669 3728341 CHY_1725 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360545.1 1539519 R 246194 CDS YP_360546.1 78044316 3727433 complement(1541753..1541923) 1 NC_007503.1 hypothetical protein 1541923 3727433 CHY_1726 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360546.1 1541753 R 246194 CDS YP_360547.1 78043526 3726575 complement(1541898..1543607) 1 NC_007503.1 hypothetical protein 1543607 3726575 CHY_1727 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360547.1 1541898 R 246194 CDS YP_360548.1 78042813 3726830 complement(1544593..1545225) 1 NC_007503.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358; FMN reductase, NADPH-dependent 1545225 3726830 CHY_1728 Carboxydothermus hydrogenoformans Z-2901 FMN reductase, NADPH-dependent YP_360548.1 1544593 R 246194 CDS YP_360549.1 78045038 3728163 complement(1545376..1546152) 1 NC_007503.1 identified by similarity to GB:BAB39459.1; match to protein family HMM PF00561; alpha/beta hydrolase 1546152 3728163 CHY_1729 Carboxydothermus hydrogenoformans Z-2901 alpha/beta hydrolase YP_360549.1 1545376 R 246194 CDS YP_360550.1 78044808 3727933 complement(1546170..1547597) 1 NC_007503.1 identified by match to protein family HMM PF03241; 4-hydroxyphenylacetate 3-hydroxylase 1547597 3727933 CHY_1730 Carboxydothermus hydrogenoformans Z-2901 4-hydroxyphenylacetate 3-hydroxylase YP_360550.1 1546170 R 246194 CDS YP_360551.1 78044063 3727179 complement(1547668..1549308) 1 NC_007503.1 identified by similarity to SP:P29212; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 1549308 fadD3 3727179 fadD3 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_360551.1 1547668 R 246194 CDS YP_360552.1 78043883 3726506 complement(1549377..1550519) 1 NC_007503.1 identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1550519 3726506 CHY_1732 Carboxydothermus hydrogenoformans Z-2901 acyl-CoA dehydrogenase YP_360552.1 1549377 R 246194 CDS YP_360553.1 78043128 3728666 complement(1550512..1550634) 1 NC_007503.1 hypothetical protein 1550634 3728666 CHY_1733 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360553.1 1550512 R 246194 CDS YP_360554.1 78043147 3728510 complement(1550648..1551931) 1 NC_007503.1 identified by similarity to GB:AAM04461.1; match to protein family HMM PF04015; hypothetical protein 1551931 3728510 CHY_1734 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360554.1 1550648 R 246194 CDS YP_360555.1 78045056 3728182 complement(1551940..1553586) 1 NC_007503.1 identified by similarity to SP:P29212; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 1553586 fadD4 3728182 fadD4 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_360555.1 1551940 R 246194 CDS YP_360556.1 78044324 3727441 complement(1553707..1554507) 1 NC_007503.1 identified by similarity to GB:CAE33263.1; match to protein family HMM PF00378; enoyl-CoA hydratase 1554507 3727441 CHY_1736 Carboxydothermus hydrogenoformans Z-2901 enoyl-CoA hydratase YP_360556.1 1553707 R 246194 CDS YP_360557.1 78042926 3727025 complement(1554529..1555689) 1 NC_007503.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; short-chain specific acyl-CoA dehydrogenase 1555689 3727025 CHY_1737 Carboxydothermus hydrogenoformans Z-2901 short-chain specific acyl-CoA dehydrogenase YP_360557.1 1554529 R 246194 CDS YP_360558.1 78042759 3726892 complement(1555755..1556942) 1 NC_007503.1 identified by similarity to SP:P45359; match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase 1556942 3726892 CHY_1738 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA acetyltransferase YP_360558.1 1555755 R 246194 CDS YP_360559.1 78044173 3727289 complement(1556958..1557731) 1 NC_007503.1 identified by similarity to SP:P52046; match to protein family HMM PF00378; 3-hydroxybutyryl-CoA dehydrogenase 1557731 3727289 CHY_1739 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydrogenase YP_360559.1 1556958 R 246194 CDS YP_360560.1 78043701 3726264 complement(1557750..1558619) 1 NC_007503.1 identified by similarity to SP:P52041; match to protein family HMM PF00725; match to protein family HMM PF01210; match to protein family HMM PF02737; 3-hydroxybutyryl-CoA dehydrogenase 1558619 hbd3 3726264 hbd3 Carboxydothermus hydrogenoformans Z-2901 3-hydroxybutyryl-CoA dehydrogenase YP_360560.1 1557750 R 246194 CDS YP_360561.1 78044714 3727836 complement(1558672..1559100) 1 NC_007503.1 identified by similarity to GB:AAM02590.1; match to protein family HMM PF01796; hypothetical protein 1559100 3727836 CHY_1741 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360561.1 1558672 R 246194 CDS YP_360562.1 78044902 3728027 complement(1559112..1560119) 1 NC_007503.1 identified by similarity to SP:P24249; hypothetical protein 1560119 3728027 CHY_1742 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360562.1 1559112 R 246194 CDS YP_360563.1 78045139 3728265 complement(1560122..1561297) 1 NC_007503.1 identified by similarity to GB:AAM30566.1; match to protein family HMM PF00108; match to protein family HMM PF02803; thiolase 1561297 3728265 CHY_1743 Carboxydothermus hydrogenoformans Z-2901 thiolase YP_360563.1 1560122 R 246194 CDS YP_360564.1 78043397 3728859 complement(1561314..1562468) 1 NC_007503.1 identified by similarity to SP:P52042; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; short-chain specific acyl-CoA dehydrogenase 1562468 3728859 CHY_1744 Carboxydothermus hydrogenoformans Z-2901 short-chain specific acyl-CoA dehydrogenase YP_360564.1 1561314 R 246194 CDS YP_360565.1 78043639 3726767 1562638..1563423 1 NC_007503.1 identified by match to protein family HMM PF01614; IclR family transcriptional regulator 1563423 3726767 CHY_1745 Carboxydothermus hydrogenoformans Z-2901 IclR family transcriptional regulator YP_360565.1 1562638 D 246194 CDS YP_360566.1 78043215 3728579 complement(1563461..1563676) 1 NC_007503.1 identified by similarity to SP:O32583; match to protein family HMM PF02597; thiamine biosynthesis protein ThiS 1563676 thiS2 3728579 thiS2 Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiS YP_360566.1 1563461 R 246194 CDS YP_360567.1 78043308 3728613 complement(1563669..1565462) 1 NC_007503.1 identified by similarity to SP:Q51739; match to protein family HMM PF01314; match to protein family HMM PF02730; tungsten-containing aldehyde ferredoxin oxidoreductase 1565462 aor4 3728613 aor4 Carboxydothermus hydrogenoformans Z-2901 tungsten-containing aldehyde ferredoxin oxidoreductase YP_360567.1 1563669 R 246194 CDS YP_360568.1 78042915 3727014 complement(1565462..1566667) 1 NC_007503.1 identified by similarity to SP:P13604; match to protein family HMM PF00465; NADPH-dependent butanol dehydrogenase 1566667 adh1 3727014 adh1 Carboxydothermus hydrogenoformans Z-2901 NADPH-dependent butanol dehydrogenase YP_360568.1 1565462 R 246194 CDS YP_360569.1 78043461 3728845 complement(1566734..1566829) 1 NC_007503.1 hypothetical protein 1566829 3728845 CHY_1749 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360569.1 1566734 R 246194 CDS YP_360570.1 78043947 3726414 complement(1567060..1568295) 1 NC_007503.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISChy1, transposase 1568295 3726414 CHY_1750 Carboxydothermus hydrogenoformans Z-2901 ISChy1, transposase YP_360570.1 1567060 R 246194 CDS YP_360571.1 78043946 3726413 1568660..1569055 1 NC_007503.1 hypothetical protein 1569055 3726413 CHY_1751 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360571.1 1568660 D 246194 CDS YP_360572.1 78043202 3728566 complement(1569200..1569985) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1569985 3728566 CHY_1752 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_360572.1 1569200 R 246194 CDS YP_360573.1 78045199 3728325 complement(1569999..1570370) 1 NC_007503.1 identified by similarity to GB:AAP07470.1; hypothetical protein 1570370 3728325 CHY_1753 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360573.1 1569999 R 246194 CDS YP_360574.1 78044222 3727339 complement(1570472..1570579) 1 NC_007503.1 hypothetical protein 1570579 3727339 CHY_1754 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360574.1 1570472 R 246194 CDS YP_360575.1 78044271 3727388 complement(1570656..1571003) 1 NC_007503.1 hypothetical protein 1571003 3727388 CHY_1755 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360575.1 1570656 R 246194 CDS YP_360576.1 78045053 3728179 complement(1571106..1571786) 1 NC_007503.1 identified by similarity to SP:P50739; match to protein family HMM PF01471; match to protein family HMM PF07486; spore cortex-lytic protein 1571786 3728179 CHY_1756 Carboxydothermus hydrogenoformans Z-2901 spore cortex-lytic protein YP_360576.1 1571106 R 246194 CDS YP_360577.1 78044027 3727142 complement(1572003..1572854) 1 NC_007503.1 identified by similarity to SP:P12638; match to protein family HMM PF01261; match to protein family HMM TIGR00587; endonuclease IV 1572854 nfo 3727142 nfo Carboxydothermus hydrogenoformans Z-2901 endonuclease IV YP_360577.1 1572003 R 246194 CDS YP_360578.1 78044607 3727728 complement(1572855..1575050) 1 NC_007503.1 identified by similarity to SP:P50849; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase 1575050 pnpA 3727728 pnpA Carboxydothermus hydrogenoformans Z-2901 polynucleotide phosphorylase YP_360578.1 1572855 R 246194 CDS YP_360579.1 78043314 3728639 complement(1574977..1575129) 1 NC_007503.1 hypothetical protein 1575129 3728639 CHY_1759 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360579.1 1574977 R 246194 CDS YP_360580.1 78042784 3726879 complement(1575188..1575457) 1 NC_007503.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1575457 rpsO 3726879 rpsO Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S15 YP_360580.1 1575188 R 246194 CDS YP_360581.1 78043864 3726683 complement(1575522..1575725) 1 NC_007503.1 hypothetical protein 1575725 3726683 CHY_1761 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360581.1 1575522 R 246194 CDS YP_360582.1 78044293 3727410 complement(1575768..1576691) 1 NC_007503.1 identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 1576691 ribF 3727410 ribF Carboxydothermus hydrogenoformans Z-2901 riboflavin biosynthesis protein RibF YP_360582.1 1575768 R 246194 CDS YP_360583.1 78045042 3728168 complement(1576699..1577565) 1 NC_007503.1 identified by similarity to SP:P32732; match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 1577565 truB 3728168 truB Carboxydothermus hydrogenoformans Z-2901 tRNA pseudouridine synthase B YP_360583.1 1576699 R 246194 CDS YP_360584.1 78042714 3726964 complement(1577568..1578518) 1 NC_007503.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; DHH/DHHA1 family protein 1578518 3726964 CHY_1764 Carboxydothermus hydrogenoformans Z-2901 DHH/DHHA1 family protein YP_360584.1 1577568 R 246194 CDS YP_360585.1 78043533 3726719 complement(1578508..1578885) 1 NC_007503.1 identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A 1578885 rbfA 3726719 rbfA Carboxydothermus hydrogenoformans Z-2901 ribosome-binding factor A YP_360585.1 1578508 R 246194 CDS YP_360586.1 78043976 3726211 complement(1578892..1581375) 1 NC_007503.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1581375 infB 3726211 infB Carboxydothermus hydrogenoformans Z-2901 translation initiation factor IF-2 YP_360586.1 1578892 R 246194 CDS YP_360587.1 78043262 3728548 complement(1581375..1581689) 1 NC_007503.1 identified by match to protein family HMM PF01248; 50S ribosomal protein L7 1581689 3728548 CHY_1767 Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L7 YP_360587.1 1581375 R 246194 CDS YP_360588.1 78045092 3728218 complement(1581676..1581954) 1 NC_007503.1 identified by similarity to GB:AAO81065.1; match to protein family HMM PF04296; hypothetical protein 1581954 3728218 CHY_1768 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360588.1 1581676 R 246194 CDS YP_360589.1 78042921 3727020 complement(1581954..1582994) 1 NC_007503.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1582994 nusA 3727020 nusA Carboxydothermus hydrogenoformans Z-2901 transcription elongation factor NusA YP_360589.1 1581954 R 246194 CDS YP_360590.1 78044682 3727804 complement(1583012..1583476) 1 NC_007503.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1583476 3727804 CHY_1770 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360590.1 1583012 R 246194 CDS YP_360591.1 78043391 3728776 complement(1583503..1583601) 1 NC_007503.1 hypothetical protein 1583601 3728776 CHY_1771 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360591.1 1583503 R 246194 CDS YP_360592.1 78044072 3727188 complement(1583643..1587866) 1 NC_007503.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573; match to protein family HMM TIGR01405; DNA polymerase III subunit alpha 1587866 polC 3727188 polC Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit alpha YP_360592.1 1583643 R 246194 CDS YP_360593.1 78044296 3727413 complement(1587873..1588532) 1 NC_007503.1 identified by match to protein family HMM PF01842; match to protein family HMM PF02308; mgtC family protein 1588532 3727413 CHY_1773 Carboxydothermus hydrogenoformans Z-2901 mgtC family protein YP_360593.1 1587873 R 246194 CDS YP_360594.1 78043920 3726348 complement(1588551..1589201) 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1589201 3726348 CHY_1774 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_360594.1 1588551 R 246194 CDS YP_360595.1 78042796 3726852 complement(1589214..1590923) 1 NC_007503.1 identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409; prolyl-tRNA synthetase 1590923 proS 3726852 proS Carboxydothermus hydrogenoformans Z-2901 prolyl-tRNA synthetase YP_360595.1 1589214 R 246194 CDS YP_360596.1 78045061 3728187 complement(1590923..1591990) 1 NC_007503.1 identified by match to protein family HMM PF04551; match to protein family HMM TIGR00612; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1591990 ispG 3728187 ispG Carboxydothermus hydrogenoformans Z-2901 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_360596.1 1590923 R 246194 CDS YP_360597.1 78042913 3727012 complement(1591992..1593023) 1 NC_007503.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1593023 3727012 CHY_1777 Carboxydothermus hydrogenoformans Z-2901 membrane-associated zinc metalloprotease YP_360597.1 1591992 R 246194 CDS YP_360598.1 78045003 3728128 complement(1593020..1594174) 1 NC_007503.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1594174 dxr 3728128 dxr Carboxydothermus hydrogenoformans Z-2901 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_360598.1 1593020 R 246194 CDS YP_360599.1 78045196 3728322 complement(1594190..1595245) 1 NC_007503.1 identified by match to protein family HMM PF01594; membrane protein, AMBIGUITY 1595245 3728322 CHY_1779 Carboxydothermus hydrogenoformans Z-2901 membrane protein, AMBIGUITY YP_360599.1 1594190 R 246194 CDS YP_360600.1 78043280 3728723 complement(1595255..1596016) 1 NC_007503.1 identified by similarity to SP:O31752; match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1596016 cdsA 3728723 cdsA Carboxydothermus hydrogenoformans Z-2901 phosphatidate cytidylyltransferase YP_360600.1 1595255 R 246194 CDS YP_360601.1 78043658 3728460 complement(1596031..1596798) 1 NC_007503.1 identified by similarity to SP:O82827; match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1596798 uppS 3728460 uppS Carboxydothermus hydrogenoformans Z-2901 undecaprenyl diphosphate synthase YP_360601.1 1596031 R 246194 CDS YP_360602.1 78042697 3726947 complement(1596953..1597117) 1 NC_007503.1 identified by similarity to GP:144806; match to protein family HMM PF00037; ferredoxin 1597117 3726947 CHY_1782 Carboxydothermus hydrogenoformans Z-2901 ferredoxin YP_360602.1 1596953 R 246194 CDS YP_360603.1 78043078 3726395 complement(1597107..1597322) 1 NC_007503.1 hypothetical protein 1597322 3726395 CHY_1783 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360603.1 1597107 R 246194 CDS YP_360604.1 78045140 3728266 complement(1597325..1597882) 1 NC_007503.1 identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 1597882 frr 3728266 frr Carboxydothermus hydrogenoformans Z-2901 ribosome recycling factor YP_360604.1 1597325 R 246194 CDS YP_360605.1 78044543 3727662 complement(1597879..1598607) 1 NC_007503.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase 1598607 pyrH 3727662 pyrH Carboxydothermus hydrogenoformans Z-2901 uridylate kinase YP_360605.1 1597879 R 246194 CDS YP_360606.1 78043326 3728651 complement(1598688..1599341) 1 NC_007503.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1599341 tsf 3728651 tsf Carboxydothermus hydrogenoformans Z-2901 elongation factor Ts YP_360606.1 1598688 R 246194 CDS YP_360607.1 78042772 3726905 complement(1599452..1600150) 1 NC_007503.1 identified by similarity to SP:P21464; match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 1600150 rpsB 3726905 rpsB Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S2 YP_360607.1 1599452 R 246194 CDS YP_360608.1 78044581 3727701 1600127..1600312 1 NC_007503.1 hypothetical protein 1600312 3727701 CHY_1788 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360608.1 1600127 D 246194 CDS YP_360609.1 78043779 3726635 complement(1600301..1601086) 1 NC_007503.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1601086 codY 3726635 codY Carboxydothermus hydrogenoformans Z-2901 transcriptional repressor CodY YP_360609.1 1600301 R 246194 CDS YP_360610.1 78043832 3728442 complement(1601123..1602508) 1 NC_007503.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1602508 hslU 3728442 hslU Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease ATP-binding subunit HslU YP_360610.1 1601123 R 246194 CDS YP_360611.1 78043411 3728873 complement(1602510..1603049) 1 NC_007503.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1603049 hslV 3728873 hslV Carboxydothermus hydrogenoformans Z-2901 ATP-dependent protease peptidase subunit YP_360611.1 1602510 R 246194 CDS YP_360612.1 78043995 3726230 complement(1603042..1603935) 1 NC_007503.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerC 1603935 xerC 3726230 xerC Carboxydothermus hydrogenoformans Z-2901 tyrosine recombinase XerC YP_360612.1 1603042 R 246194 CDS YP_360613.1 78044952 3728077 complement(1603928..1605229) 1 NC_007503.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1605229 gidA2 3728077 gidA2 Carboxydothermus hydrogenoformans Z-2901 tRNA (uracil-5-)-methyltransferase Gid YP_360613.1 1603928 R 246194 CDS YP_360614.1 78042828 3726845 complement(1605226..1607310) 1 NC_007503.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 1607310 topA 3726845 topA Carboxydothermus hydrogenoformans Z-2901 DNA topoisomerase I YP_360614.1 1605226 R 246194 CDS YP_360615.1 78044382 3727500 complement(1607323..1608399) 1 NC_007503.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA proccessing protein DprA 1608399 3727500 CHY_1795 Carboxydothermus hydrogenoformans Z-2901 DNA proccessing protein DprA YP_360615.1 1607323 R 246194 CDS YP_360616.1 78044993 3728118 1608394..1608549 1 NC_007503.1 hypothetical protein 1608549 3728118 CHY_1796 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360616.1 1608394 D 246194 CDS YP_360617.1 78043209 3728573 complement(1608476..1609315) 1 NC_007503.1 identified by similarity to GB:BAC70657.1; hypothetical protein 1609315 3728573 CHY_1797 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360617.1 1608476 R 246194 CDS YP_360618.1 78043846 3726587 complement(1609410..1610021) 1 NC_007503.1 identified by match to protein family HMM PF00881; nitroreductase 1610021 3726587 CHY_1798 Carboxydothermus hydrogenoformans Z-2901 nitroreductase YP_360618.1 1609410 R 246194 CDS YP_360619.1 78044408 3727526 complement(1610059..1610856) 1 NC_007503.1 identified by similarity to GB:AAL80827.1; hypothetical protein 1610856 3727526 CHY_1799 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360619.1 1610059 R 246194 CDS YP_360620.1 78043156 3728519 complement(1610857..1611441) 1 NC_007503.1 identified by similarity to GP:28203150; match to protein family HMM PF03358; hypothetical protein 1611441 3728519 CHY_1800 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360620.1 1610857 R 246194 CDS YP_360621.1 78043698 3726261 complement(1611419..1611526) 1 NC_007503.1 hypothetical protein 1611526 3726261 CHY_1801 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360621.1 1611419 R 246194 CDS YP_360622.1 78043903 3726526 complement(1611529..1613436) 1 NC_007503.1 identified by similarity to SP:P14081; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor 1613436 selB 3726526 selB Carboxydothermus hydrogenoformans Z-2901 selenocysteine-specific translation elongation factor YP_360622.1 1611529 R 246194 CDS YP_360623.1 78044306 3727423 complement(1613433..1614833) 1 NC_007503.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1614833 selA 3727423 selA Carboxydothermus hydrogenoformans Z-2901 selenocysteine synthase YP_360623.1 1613433 R 246194 CDS YP_360624.1 78045075 3728201 complement(1614838..1615914) 1 NC_007503.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 1615914 3728201 CHY_1804 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_360624.1 1614838 R 246194 CDS YP_360625.1 78043473 3728800 complement(1615905..1616750) 1 NC_007503.1 identified by similarity to GP:1813469; match to protein family HMM PF02621; hypothetical protein 1616750 3728800 CHY_1805 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360625.1 1615905 R 246194 CDS YP_360626.1 78044724 3727847 complement(1616747..1617850) 1 NC_007503.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423; radical SAM domain-containing protein 1617850 3727847 CHY_1806 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_360626.1 1616747 R 246194 CDS YP_360627.1 78042717 3726928 complement(1617866..1618714) 1 NC_007503.1 identified by match to protein family HMM PF01040; match to protein family HMM TIGR01475; 4-hydroxybenzoate polyprenyltransferase 1618714 3726928 CHY_1807 Carboxydothermus hydrogenoformans Z-2901 4-hydroxybenzoate polyprenyltransferase YP_360627.1 1617866 R 246194 CDS YP_360628.1 78043905 3726528 complement(1618707..1620155) 1 NC_007503.1 identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1620155 ubiD 3726528 ubiD Carboxydothermus hydrogenoformans Z-2901 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_360628.1 1618707 R 246194 CDS YP_360629.1 78043979 3726214 complement(1620174..1620908) 1 NC_007503.1 identified by similarity to SP:O86169; match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM TIGR01934; 2-heptaprenyl-1,4-naphthoquinone methyltransferase 1620908 menG 3726214 menG Carboxydothermus hydrogenoformans Z-2901 2-heptaprenyl-1,4-naphthoquinone methyltransferase YP_360629.1 1620174 R 246194 CDS YP_360630.1 78044804 3727929 complement(1620928..1621560) 1 NC_007503.1 identified by similarity to PIR:A81213; hypothetical protein 1621560 3727929 CHY_1810 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360630.1 1620928 R 246194 CDS YP_360631.1 78043961 3726741 complement(1621743..1622126) 1 NC_007503.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 1622126 speD 3726741 speD Carboxydothermus hydrogenoformans Z-2901 S-adenosylmethionine decarboxylase YP_360631.1 1621743 R 246194 CDS YP_360632.1 78044524 3727643 complement(1622325..1623080) 1 NC_007503.1 identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase 1623080 3727643 CHY_1812 Carboxydothermus hydrogenoformans Z-2901 fumarylacetoacetate hydrolase YP_360632.1 1622325 R 246194 CDS YP_360633.1 78043776 3726809 complement(1623077..1625248) 1 NC_007503.1 hypothetical protein 1625248 3726809 CHY_1813 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360633.1 1623077 R 246194 CDS YP_360634.1 78042978 3726547 complement(1625245..1626354) 1 NC_007503.1 identified by match to protein family HMM PF00534; glycosyl transferase family protein 1626354 3726547 CHY_1814 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_360634.1 1625245 R 246194 CDS YP_360635.1 78044853 3727978 complement(1626329..1628566) 1 NC_007503.1 identified by match to protein family HMM TIGR01448; recombinase D 1628566 3727978 CHY_1815 Carboxydothermus hydrogenoformans Z-2901 recombinase D YP_360635.1 1626329 R 246194 CDS YP_360636.1 78044165 3727281 complement(1628656..1629948) 1 NC_007503.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1629948 3727281 CHY_1816 Carboxydothermus hydrogenoformans Z-2901 hydroxylamine reductase YP_360636.1 1628656 R 246194 CDS YP_360637.1 78042900 3727038 1629964..1630062 1 NC_007503.1 hypothetical protein 1630062 3727038 CHY_1817 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360637.1 1629964 D 246194 CDS YP_360638.1 78043407 3728869 complement(1630086..1631198) 1 NC_007503.1 identified by similarity to SP:Q9X4A7; match to protein family HMM PF02073; aminopeptidase 1631198 3728869 CHY_1818 Carboxydothermus hydrogenoformans Z-2901 aminopeptidase YP_360638.1 1630086 R 246194 CDS YP_360639.1 78042645 3726309 complement(1631236..1631997) 1 NC_007503.1 hypothetical protein 1631997 3726309 CHY_1819 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360639.1 1631236 R 246194 CDS YP_360640.1 78044309 3727426 1632098..1632721 1 NC_007503.1 identified by similarity to SP:P09548; match to protein family HMM PF00597; dedA protein 1632721 dedA 3727426 dedA Carboxydothermus hydrogenoformans Z-2901 dedA protein YP_360640.1 1632098 D 246194 CDS YP_360641.1 78042875 3727051 complement(1632698..1632838) 1 NC_007503.1 hypothetical protein 1632838 3727051 CHY_1821 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360641.1 1632698 R 246194 CDS YP_360642.1 78044620 3727741 complement(1632820..1633092) 1 NC_007503.1 hypothetical protein 1633092 3727741 CHY_1822 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360642.1 1632820 R 246194 CDS YP_360643.1 78044050 3727165 1633224..1633319 1 NC_007503.1 hypothetical protein 1633319 3727165 CHY_1823 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360643.1 1633224 D 246194 CDS YP_360644.1 78043418 3728783 complement(1633482..1635392) 1 NC_007503.1 identified by similarity to SP:P31896; match to protein family HMM PF03063; match to protein family HMM TIGR01702; carbon-monoxide dehydrogenase catalytic subunit 1635392 cooSI 3728783 cooSI Carboxydothermus hydrogenoformans Z-2901 carbon-monoxide dehydrogenase catalytic subunit YP_360644.1 1633482 R 246194 CDS YP_360645.1 78044791 3727916 complement(1635419..1635982) 1 NC_007503.1 identified by similarity to SP:P31894; match to protein family HMM PF00037; (Fe-S)-binding protein 1635982 cooF3 3727916 cooF3 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360645.1 1635419 R 246194 CDS YP_360646.1 78044340 3727457 complement(1636098..1636442) 1 NC_007503.1 identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 1636442 hypA2 3727457 hypA2 Carboxydothermus hydrogenoformans Z-2901 hydrogenase nickel incorporation protein HypA YP_360646.1 1636098 R 246194 CDS YP_360647.1 78043871 3726690 complement(1636464..1637546) 1 NC_007503.1 identified by similarity to SP:P31895; match to protein family HMM PF00346; carbon monoxide-induced hydrogenase large subunit 1637546 cooH 3726690 cooH Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase large subunit YP_360647.1 1636464 R 246194 CDS YP_360648.1 78044023 3727138 complement(1637543..1638085) 1 NC_007503.1 identified by similarity to GP:1515470; match to protein family HMM PF00329; carbon monoxide-induced hydrogenase subunit CooU 1638085 cooU 3727138 cooU Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase subunit CooU YP_360648.1 1637543 R 246194 CDS YP_360649.1 78043124 3728662 complement(1638103..1638600) 1 NC_007503.1 identified by similarity to GP:1515469; match to protein family HMM PF00037; carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit 1638600 cooX 3728662 cooX Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit YP_360649.1 1638103 R 246194 CDS YP_360650.1 78043938 3726405 complement(1638614..1639045) 1 NC_007503.1 identified by similarity to GP:1515468; match to protein family HMM PF01058; carbon monoxide-induced hydrogenase subunit CooL 1639045 cooL 3726405 cooL Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase subunit CooL YP_360650.1 1638614 R 246194 CDS YP_360651.1 78044700 3727822 complement(1639058..1640023) 1 NC_007503.1 identified by similarity to GP:1515467; match to protein family HMM PF00146; carbon monoxide-induced hydrogenase subunit CooK 1640023 cooK 3727822 cooK Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase subunit CooK YP_360651.1 1639058 R 246194 CDS YP_360652.1 78043942 3726409 complement(1640026..1643850) 1 NC_007503.1 identified by similarity to GP:1515466; match to protein family HMM PF00361; carbon monoxide-induced hydrogenase, membrane anchor subunit 1643850 cooM 3726409 cooM Carboxydothermus hydrogenoformans Z-2901 carbon monoxide-induced hydrogenase, membrane anchor subunit YP_360652.1 1640026 R 246194 CDS YP_360653.1 78043928 3726356 complement(1643828..1643926) 1 NC_007503.1 hypothetical protein 1643926 3726356 CHY_1833 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360653.1 1643828 R 246194 CDS YP_360654.1 78043296 3728601 complement(1643995..1644801) 1 NC_007503.1 identified by similarity to SP:P31897; match to protein family HMM PF01656; CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC 1644801 cooC3 3728601 cooC3 Carboxydothermus hydrogenoformans Z-2901 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC YP_360654.1 1643995 R 246194 CDS YP_360655.1 78044021 3727136 complement(1644960..1645613) 1 NC_007503.1 identified by similarity to SP:P29283; match to protein family HMM PF00027; carbon monoxide oxidation system transcription regulator CooA-1 1645613 cooA-1 3727136 cooA-1 Carboxydothermus hydrogenoformans Z-2901 carbon monoxide oxidation system transcription regulator CooA-1 YP_360655.1 1644960 R 246194 CDS YP_360656.1 78044464 3727583 complement(1645911..1647128) 1 NC_007503.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 1647128 glpC 3727583 glpC Carboxydothermus hydrogenoformans Z-2901 sn-glycerol-3-phosphate dehydrogenase subunit C YP_360656.1 1645911 R 246194 CDS YP_360657.1 78045177 3728303 complement(1647121..1648302) 1 NC_007503.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 1648302 glpB 3728303 glpB Carboxydothermus hydrogenoformans Z-2901 anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_360657.1 1647121 R 246194 CDS YP_360658.1 78043719 3726673 complement(1648295..1649881) 1 NC_007503.1 identified by similarity to SP:P13032; match to protein family HMM PF01266; match to protein family HMM PF04324; anaerobic glycerol-3-phosphate dehydrogenase subunit A 1649881 glpA 3726673 glpA Carboxydothermus hydrogenoformans Z-2901 anaerobic glycerol-3-phosphate dehydrogenase subunit A YP_360658.1 1648295 R 246194 CDS YP_360659.1 78044255 3727372 complement(1650138..1651640) 1 NC_007503.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 1651640 glpK 3727372 glpK Carboxydothermus hydrogenoformans Z-2901 glycerol kinase YP_360659.1 1650138 R 246194 CDS YP_360660.1 78045107 3728233 complement(1651672..1652382) 1 NC_007503.1 identified by similarity to SP:Q9X1E3; match to protein family HMM PF00230; match to protein family HMM TIGR00861; glycerol uptake facilitator protein 1652382 3728233 CHY_1840 Carboxydothermus hydrogenoformans Z-2901 glycerol uptake facilitator protein YP_360660.1 1651672 R 246194 CDS YP_360661.1 78043047 3726423 complement(1652456..1652575) 1 NC_007503.1 hypothetical protein 1652575 3726423 CHY_1841 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360661.1 1652456 R 246194 CDS YP_360662.1 78044075 3727191 complement(1652475..1652642) 1 NC_007503.1 hypothetical protein 1652642 3727191 CHY_1842 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360662.1 1652475 R 246194 CDS YP_360663.1 78044988 3728113 complement(1652730..1653302) 1 NC_007503.1 identified by similarity to SP:P30300; match to protein family HMM PF04309; glycerol uptake operon antiterminator regulatory protein 1653302 glpP 3728113 glpP Carboxydothermus hydrogenoformans Z-2901 glycerol uptake operon antiterminator regulatory protein YP_360663.1 1652730 R 246194 CDS YP_360664.1 78044106 3727222 1653438..1654586 1 NC_007503.1 identified by similarity to PIR:A75600; match to protein family HMM PF02585; hypothetical protein 1654586 3727222 CHY_1844 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360664.1 1653438 D 246194 CDS YP_360665.1 78043455 3728839 1654656..1655186 1 NC_007503.1 identified by similarity to SP:Q06198; similarity to SP:Q45585; match to protein family HMM PF04542; RNA polymerase sigma-W factor 1655186 3728839 CHY_1845 Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma-W factor YP_360665.1 1654656 D 246194 CDS YP_360666.1 78042889 3727065 1655179..1655550 1 NC_007503.1 hypothetical protein 1655550 3727065 CHY_1846 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360666.1 1655179 D 246194 CDS YP_360667.1 78044090 3727206 1655553..1655873 1 NC_007503.1 hypothetical protein 1655873 3727206 CHY_1847 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360667.1 1655553 D 246194 CDS YP_360668.1 78044292 3727409 complement(1655851..1656117) 1 NC_007503.1 hypothetical protein 1656117 3727409 CHY_1848 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360668.1 1655851 R 246194 CDS YP_360669.1 78043766 3726799 1656257..1656943 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1656943 3726799 CHY_1849 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_360669.1 1656257 D 246194 CDS YP_360670.1 78043097 3726375 1656943..1657473 1 NC_007503.1 identified by similarity to SP:P42334; match to protein family HMM PF01569; PAP2 family protein 1657473 3726375 CHY_1850 Carboxydothermus hydrogenoformans Z-2901 PAP2 family protein YP_360670.1 1656943 D 246194 CDS YP_360671.1 78043691 3726254 1657467..1658393 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 1658393 3726254 CHY_1851 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_360671.1 1657467 D 246194 CDS YP_360672.1 78044346 3727463 complement(1658390..1661497) 1 NC_007503.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin oxidoreductase, molybdopterin-binding subunit 1661497 3727463 CHY_1852 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, molybdopterin-binding subunit YP_360672.1 1658390 R 246194 CDS YP_360673.1 78045068 3728194 complement(1661499..1662731) 1 NC_007503.1 identified by similarity to OMNI:AF0500; match to protein family HMM PF03916; molybdopterin oxidoreductase membrane subunit 1662731 3728194 CHY_1853 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase membrane subunit YP_360673.1 1661499 R 246194 CDS YP_360674.1 78043167 3728686 complement(1662759..1663400) 1 NC_007503.1 identified by match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur binding subunit 1663400 3728686 CHY_1854 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_360674.1 1662759 R 246194 CDS YP_360675.1 78044512 3727631 complement(1663641..1664972) 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1664972 3727631 CHY_1855 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360675.1 1663641 R 246194 CDS YP_360676.1 78045212 3728338 complement(1664956..1666764) 1 NC_007503.1 identified by similarity to SP:Q06067; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1666764 3728338 CHY_1856 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_360676.1 1664956 R 246194 CDS YP_360677.1 78042725 3726936 complement(1666782..1667768) 1 NC_007503.1 identified by match to protein family HMM PF04392; lipoprotein 1667768 3726936 CHY_1857 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360677.1 1666782 R 246194 CDS YP_360678.1 78044643 3727765 complement(1667934..1668587) 1 NC_007503.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 1668587 3727765 CHY_1858 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_360678.1 1667934 R 246194 CDS YP_360679.1 78043458 3728842 complement(1668545..1668685) 1 NC_007503.1 hypothetical protein 1668685 3728842 CHY_1859 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360679.1 1668545 R 246194 CDS YP_360680.1 78042970 3726539 complement(1668675..1668854) 1 NC_007503.1 hypothetical protein 1668854 3726539 CHY_1860 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360680.1 1668675 R 246194 CDS YP_360681.1 78043270 3728556 complement(1668879..1668989) 1 NC_007503.1 hypothetical protein 1668989 3728556 CHY_1861 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360681.1 1668879 R 246194 CDS YP_360682.1 78043621 3728832 1668992..1669375 1 NC_007503.1 identified by match to protein family HMM PF01381; DNA-binding protein 1669375 3728832 CHY_1862 Carboxydothermus hydrogenoformans Z-2901 DNA-binding protein YP_360682.1 1668992 D 246194 CDS YP_360683.1 78042756 3726889 complement(1669393..1670487) 1 NC_007503.1 identified by similarity to SP:P52599; match to protein family HMM PF00529; multidrug resistance protein 1670487 3726889 CHY_1863 Carboxydothermus hydrogenoformans Z-2901 multidrug resistance protein YP_360683.1 1669393 R 246194 CDS YP_360684.1 78045127 3728253 complement(1670494..1672059) 1 NC_007503.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1672059 3728253 CHY_1864 Carboxydothermus hydrogenoformans Z-2901 EmrB/QacA family drug resistance transporter YP_360684.1 1670494 R 246194 CDS YP_360685.1 78044573 3727693 complement(1672073..1672867) 1 NC_007503.1 identified by similarity to GB:CAE34050.1; match to protein family HMM PF01978; transcriptional regulator 1672867 3727693 CHY_1865 Carboxydothermus hydrogenoformans Z-2901 transcriptional regulator YP_360685.1 1672073 R 246194 CDS YP_360686.1 78043240 3728623 1673090..1673635 1 NC_007503.1 identified by similarity to GB:AAM24033.1; hypothetical protein 1673635 3728623 CHY_1866 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360686.1 1673090 D 246194 CDS YP_360687.1 78044974 3728099 complement(1673700..1674611) 1 NC_007503.1 identified by match to protein family HMM PF00892; hypothetical protein 1674611 3728099 CHY_1867 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360687.1 1673700 R 246194 CDS YP_360688.1 78044789 3727914 1675310..1675774 1 NC_007503.1 identified by similarity to GB:AAP68417.1; match to protein family HMM PF04542; RNA polymerase sigma-M factor 1675774 3727914 CHY_1868 Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma-M factor YP_360688.1 1675310 D 246194 CDS YP_360689.1 78044203 3727320 1675775..1676692 1 NC_007503.1 identified by similarity to GB:AAM24763.1; hypothetical protein 1676692 3727320 CHY_1869 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360689.1 1675775 D 246194 CDS YP_360690.1 78043817 3728427 complement(1677006..1677482) 1 NC_007503.1 identified by match to protein family HMM PF00583; acetyltransferase 1677482 3728427 CHY_1870 Carboxydothermus hydrogenoformans Z-2901 acetyltransferase YP_360690.1 1677006 R 246194 CDS YP_360691.1 78042816 3726833 complement(1677554..1678135) 1 NC_007503.1 identified by similarity to GB:AAO35996.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1678135 3726833 CHY_1871 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_360691.1 1677554 R 246194 CDS YP_360692.1 78043474 3728801 complement(1678352..1678909) 1 NC_007503.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1678909 efp 3728801 efp Carboxydothermus hydrogenoformans Z-2901 elongation factor P YP_360692.1 1678352 R 246194 CDS YP_360693.1 78043318 3728643 complement(1678949..1680013) 1 NC_007503.1 identified by similarity to GP:1915907; match to protein family HMM PF00557; aminopeptidase 1680013 pepP 3728643 pepP Carboxydothermus hydrogenoformans Z-2901 aminopeptidase YP_360693.1 1678949 R 246194 CDS YP_360694.1 78042722 3726933 complement(1679991..1680455) 1 NC_007503.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1680455 aroQ 3726933 aroQ Carboxydothermus hydrogenoformans Z-2901 3-dehydroquinate dehydratase YP_360694.1 1679991 R 246194 CDS YP_360695.1 78044830 3727955 complement(1680513..1682348) 1 NC_007503.1 identified by similarity to GB:AAM23351.1; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277; sensory box protein 1682348 3727955 CHY_1875 Carboxydothermus hydrogenoformans Z-2901 sensory box protein YP_360695.1 1680513 R 246194 CDS YP_360696.1 78044256 3727373 complement(1682665..1683213) 1 NC_007503.1 hypothetical protein 1683213 3727373 CHY_1876 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360696.1 1682665 R 246194 CDS YP_360697.1 78043625 3726753 complement(1683222..1683743) 1 NC_007503.1 hypothetical protein 1683743 3726753 CHY_1877 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360697.1 1683222 R 246194 CDS YP_360698.1 78044829 3727954 complement(1683992..1684855) 1 NC_007503.1 identified by match to protein family HMM PF00763; match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase 1684855 folD 3727954 folD Carboxydothermus hydrogenoformans Z-2901 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase YP_360698.1 1683992 R 246194 CDS YP_360699.1 78045110 3728236 complement(1684903..1685535) 1 NC_007503.1 identified by similarity to SP:Q49135; match to protein family HMM PF04961; methenyltetrahydrofolate cyclohydrolase 1685535 fchA2 3728236 fchA2 Carboxydothermus hydrogenoformans Z-2901 methenyltetrahydrofolate cyclohydrolase YP_360699.1 1684903 R 246194 CDS YP_360700.1 78044538 3727657 complement(1685560..1685814) 1 NC_007503.1 hypothetical protein 1685814 3727657 CHY_1880 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360700.1 1685560 R 246194 CDS YP_360701.1 78044380 3727498 1685804..1685968 1 NC_007503.1 hypothetical protein 1685968 3727498 CHY_1881 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360701.1 1685804 D 246194 CDS YP_360702.1 78044453 3727572 complement(1685965..1686996) 1 NC_007503.1 identified by similarity to OMNI:NTL01BH0310; hypothetical protein 1686996 3727572 CHY_1882 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360702.1 1685965 R 246194 CDS YP_360703.1 78043963 3726743 1687343..1687768 1 NC_007503.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 1687768 3726743 CHY_1883 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_360703.1 1687343 D 246194 CDS YP_360704.1 78043826 3728436 1687761..1687883 1 NC_007503.1 hypothetical protein 1687883 3728436 CHY_1884 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360704.1 1687761 D 246194 CDS YP_360705.1 78044951 3728076 complement(1688331..1688567) 1 NC_007503.1 hypothetical protein 1688567 3728076 CHY_1885 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360705.1 1688331 R 246194 CDS YP_360706.1 78043656 3728458 complement(1689106..1689303) 1 NC_007503.1 hypothetical protein 1689303 3728458 CHY_1886 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360706.1 1689106 R 246194 CDS YP_360707.1 78043551 3726776 complement(1689452..1690345) 1 NC_007503.1 hypothetical protein 1690345 3726776 CHY_1887 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360707.1 1689452 R 246194 CDS YP_360708.1 78042617 3726986 complement(1691262..1691465) 1 NC_007503.1 hypothetical protein 1691465 3726986 CHY_1888 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360708.1 1691262 R 246194 CDS YP_360709.1 78043059 3726435 complement(1691499..1692329) 1 NC_007503.1 identified by similarity to SP:P41363; alkaline protease domain-containing protein 1692329 3726435 CHY_1889 Carboxydothermus hydrogenoformans Z-2901 alkaline protease domain-containing protein YP_360709.1 1691499 R 246194 CDS YP_360710.1 78045159 3728285 complement(1692893..1693930) 1 NC_007503.1 lipoprotein 1693930 3728285 CHY_1890 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360710.1 1692893 R 246194 CDS YP_360711.1 78043880 3726503 complement(1693824..1693928) 1 NC_007503.1 hypothetical protein 1693928 3726503 CHY_1891 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360711.1 1693824 R 246194 CDS YP_360712.1 78043345 3728534 complement(1694000..1695106) 1 NC_007503.1 hypothetical protein 1695106 3728534 CHY_1892 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360712.1 1694000 R 246194 CDS YP_360713.1 78042763 3726896 complement(1695295..1695816) 1 NC_007503.1 lipoprotein 1695816 3726896 CHY_1893 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360713.1 1695295 R 246194 CDS YP_360714.1 78045128 3728254 complement(1696126..1697157) 1 NC_007503.1 identified by similarity to PIR:E83688; hypothetical protein 1697157 3728254 CHY_1894 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360714.1 1696126 R 246194 CDS YP_360715.1 78044556 3727675 complement(1697441..1697938) 1 NC_007503.1 lipoprotein 1697938 3727675 CHY_1895 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360715.1 1697441 R 246194 CDS YP_360716.1 78043453 3728837 1698148..1698573 1 NC_007503.1 identified by similarity to GB:AAM23974.1; match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 1698573 3728837 CHY_1896 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_360716.1 1698148 D 246194 CDS YP_360717.1 78042728 3726939 1698566..1698688 1 NC_007503.1 hypothetical protein 1698688 3726939 CHY_1897 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360717.1 1698566 D 246194 CDS YP_360718.1 78044575 3727695 complement(1698843..1699040) 1 NC_007503.1 hypothetical protein 1699040 3727695 CHY_1898 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360718.1 1698843 R 246194 CDS YP_360719.1 78044610 3727731 complement(1699088..1699594) 1 NC_007503.1 hypothetical protein 1699594 3727731 CHY_1899 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360719.1 1699088 R 246194 CDS YP_360720.1 78044022 3727137 complement(1699613..1700119) 1 NC_007503.1 identified by match to protein family HMM PF01471; peptidoglycan binding protein 1700119 3727137 CHY_1900 Carboxydothermus hydrogenoformans Z-2901 peptidoglycan binding protein YP_360720.1 1699613 R 246194 CDS YP_360721.1 78043431 3728894 complement(1700823..1702430) 1 NC_007503.1 identified by similarity to GB:AAP27784.1; hypothetical protein 1702430 3728894 CHY_1902 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360721.1 1700823 R 246194 CDS YP_360722.1 78042927 3727026 complement(1702473..1703612) 1 NC_007503.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01392; homoserine O-acetyltransferase 1703612 metX 3727026 metX Carboxydothermus hydrogenoformans Z-2901 homoserine O-acetyltransferase YP_360722.1 1702473 R 246194 CDS YP_360723.1 78043055 3726431 complement(1703621..1704886) 1 NC_007503.1 identified by similarity to PIR:T44655; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326; O-acetylhomoserine/O-acetylserine sulfhydrylase 1704886 3726431 CHY_1904 Carboxydothermus hydrogenoformans Z-2901 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_360723.1 1703621 R 246194 CDS YP_360724.1 78045121 3728247 complement(1705261..1706493) 1 NC_007503.1 identified by similarity to GB:AAM23355.1; match to protein family HMM PF01966; HD domain-containing protein 1706493 3728247 CHY_1905 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_360724.1 1705261 R 246194 CDS YP_360725.1 78044640 3727762 complement(1706550..1708859) 1 NC_007503.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1708859 3727762 CHY_1906 Carboxydothermus hydrogenoformans Z-2901 sensory box protein YP_360725.1 1706550 R 246194 CDS YP_360726.1 78044105 3727221 complement(1709179..1709373) 1 NC_007503.1 hypothetical protein 1709373 3727221 CHY_1907 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360726.1 1709179 R 246194 CDS YP_360727.1 78043854 3726595 1709489..1709812 1 NC_007503.1 identified by match to protein family HMM PF01381; DNA-binding protein 1709812 3726595 CHY_1908 Carboxydothermus hydrogenoformans Z-2901 DNA-binding protein YP_360727.1 1709489 D 246194 CDS YP_360728.1 78044447 3727565 complement(1709864..1711084) 1 NC_007503.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1711084 3727565 CHY_1909 Carboxydothermus hydrogenoformans Z-2901 aspartate kinase YP_360728.1 1709864 R 246194 CDS YP_360729.1 78043253 3728636 complement(1711078..1711992) 1 NC_007503.1 identified by match to protein family HMM PF00288; match to protein family HMM TIGR00191; homoserine kinase 1711992 thrB 3728636 thrB Carboxydothermus hydrogenoformans Z-2901 homoserine kinase YP_360729.1 1711078 R 246194 CDS YP_360730.1 78043694 3726257 complement(1712002..1713051) 1 NC_007503.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1713051 thrC 3726257 thrC Carboxydothermus hydrogenoformans Z-2901 threonine synthase YP_360730.1 1712002 R 246194 CDS YP_360731.1 78044294 3727411 complement(1713052..1714344) 1 NC_007503.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1714344 hom 3727411 hom Carboxydothermus hydrogenoformans Z-2901 homoserine dehydrogenase YP_360731.1 1713052 R 246194 CDS YP_360732.1 78044844 3727969 complement(1714371..1714811) 1 NC_007503.1 identified by similarity to SP:P21204; match to protein family HMM PF01842; hypothetical protein 1714811 pheB 3727969 pheB Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360732.1 1714371 R 246194 CDS YP_360733.1 78044644 3727766 complement(1714982..1715353) 1 NC_007503.1 identified by similarity to GB:CAD86343.1; match to protein family HMM PF01850; twitching motility protein PilT 1715353 3727766 CHY_1914 Carboxydothermus hydrogenoformans Z-2901 twitching motility protein PilT YP_360733.1 1714982 R 246194 CDS YP_360734.1 78043862 3726681 complement(1715350..1715559) 1 NC_007503.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 1715559 3726681 CHY_1915 Carboxydothermus hydrogenoformans Z-2901 AbrB family transcriptional regulator YP_360734.1 1715350 R 246194 CDS YP_360735.1 78042768 3726901 complement(1715667..1717145) 1 NC_007503.1 identified by similarity to SP:P35149; stage IV sporulation protein A 1717145 3726901 CHY_1916 Carboxydothermus hydrogenoformans Z-2901 stage IV sporulation protein A YP_360735.1 1715667 R 246194 CDS YP_360736.1 78043111 3726332 complement(1717254..1718264) 1 NC_007503.1 identified by similarity to SP:P46919; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM PF07479; glycerol-3-phosphate dehydrogenase 1718264 gpsA 3726332 gpsA Carboxydothermus hydrogenoformans Z-2901 glycerol-3-phosphate dehydrogenase YP_360736.1 1717254 R 246194 CDS YP_360737.1 78043926 3726354 complement(1718279..1718869) 1 NC_007503.1 identified by similarity to SP:Q8R9J2; match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 1718869 3726354 CHY_1918 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360737.1 1718279 R 246194 CDS YP_360738.1 78045106 3728232 complement(1718866..1720188) 1 NC_007503.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1720188 engA 3728232 engA Carboxydothermus hydrogenoformans Z-2901 GTP-binding protein EngA YP_360738.1 1718866 R 246194 CDS YP_360739.1 78043045 3726421 complement(1720194..1721489) 1 NC_007503.1 identified by similarity to OMNI:NTL01NS1209; match to protein family HMM PF04459; hypothetical protein 1721489 3726421 CHY_1920 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360739.1 1720194 R 246194 CDS YP_360740.1 78044669 3727791 complement(1721506..1721781) 1 NC_007503.1 hypothetical protein 1721781 3727791 CHY_1921 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360740.1 1721506 R 246194 CDS YP_360741.1 78044460 3727579 complement(1721848..1722312) 1 NC_007503.1 identified by similarity to GB:AAM24823.1; hypothetical protein 1722312 3727579 CHY_1922 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360741.1 1721848 R 246194 CDS YP_360742.1 78042935 3726995 complement(1722371..1723561) 1 NC_007503.1 identified by similarity to SP:P37968; stage II sporulation protein P 1723561 3726995 CHY_1923 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein P YP_360742.1 1722371 R 246194 CDS YP_360743.1 78043531 3726717 complement(1723542..1724285) 1 NC_007503.1 identified by match to protein family HMM PF07758; hypothetical protein 1724285 3726717 CHY_1924 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360743.1 1723542 R 246194 CDS YP_360744.1 78043962 3726742 complement(1724361..1726322) 1 NC_007503.1 these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1726322 lytB 3726742 lytB Carboxydothermus hydrogenoformans Z-2901 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_360744.1 1724361 R 246194 CDS YP_360745.1 78043079 3726396 complement(1726335..1726886) 1 NC_007503.1 identified by similarity to SP:Q49402; match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1726886 plsC 3726396 plsC Carboxydothermus hydrogenoformans Z-2901 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_360745.1 1726335 R 246194 CDS YP_360746.1 78043493 3726600 complement(1726876..1727544) 1 NC_007503.1 identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 1727544 cmk 3726600 cmk Carboxydothermus hydrogenoformans Z-2901 cytidylate kinase YP_360746.1 1726876 R 246194 CDS YP_360747.1 78044272 3727389 complement(1727549..1728835) 1 NC_007503.1 identified by match to protein family HMM PF00275; match to protein family HMM TIGR01356; 3-phosphoshikimate 1-carboxyvinyltransferase 1728835 aroA 3727389 aroA Carboxydothermus hydrogenoformans Z-2901 3-phosphoshikimate 1-carboxyvinyltransferase YP_360747.1 1727549 R 246194 CDS YP_360748.1 78045156 3728282 complement(1728848..1729936) 1 NC_007503.1 identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 1729936 hisC2 3728282 hisC2 Carboxydothermus hydrogenoformans Z-2901 histidinol-phosphate aminotransferase YP_360748.1 1728848 R 246194 CDS YP_360749.1 78043877 3726500 complement(1729977..1730780) 1 NC_007503.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 1730780 aroF4 3726500 aroF4 Carboxydothermus hydrogenoformans Z-2901 3-deoxy-7-phosphoheptulonate synthase YP_360749.1 1729977 R 246194 CDS YP_360750.1 78044611 3727732 complement(1730780..1731355) 1 NC_007503.1 identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II 1731355 pabA 3727732 pabA Carboxydothermus hydrogenoformans Z-2901 para-aminobenzoate/anthranilate synthase glutamine amidotransferase, component II YP_360750.1 1730780 R 246194 CDS YP_360751.1 78042853 3727068 complement(1731384..1731737) 1 NC_007503.1 identified by match to protein family HMM PF07736; match to protein family HMM TIGR01796; chorismate mutase 1731737 aroH2 3727068 aroH2 Carboxydothermus hydrogenoformans Z-2901 chorismate mutase YP_360751.1 1731384 R 246194 CDS YP_360752.1 78044776 3727900 complement(1731753..1732169) 1 NC_007503.1 hypothetical protein 1732169 3727900 CHY_1933 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360752.1 1731753 R 246194 CDS YP_360753.1 78044471 3727590 complement(1732241..1733425) 1 NC_007503.1 identified by similarity to GB:BAB80659.1; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275; hypothetical protein 1733425 3727590 CHY_1934 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360753.1 1732241 R 246194 CDS YP_360754.1 78043611 3728822 complement(1733427..1733858) 1 NC_007503.1 hypothetical protein 1733858 3728822 CHY_1935 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360754.1 1733427 R 246194 CDS YP_360755.1 78044046 3727161 1733878..1734006 1 NC_007503.1 hypothetical protein 1734006 3727161 CHY_1936 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360755.1 1733878 D 246194 CDS YP_360756.1 78044628 3727749 1733978..1734478 1 NC_007503.1 hypothetical protein 1734478 3727749 CHY_1937 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360756.1 1733978 D 246194 CDS YP_360757.1 78045168 3728294 complement(1734465..1735190) 1 NC_007503.1 identified by similarity to SP:P35159; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1735190 rluB 3728294 rluB Carboxydothermus hydrogenoformans Z-2901 ribosomal large subunit pseudouridine synthase B YP_360757.1 1734465 R 246194 CDS YP_360758.1 78043558 3726783 complement(1735195..1735845) 1 NC_007503.1 identified by similarity to PIR:AE2020; match to protein family HMM PF01569; PAP2 family protein 1735845 3726783 CHY_1939 Carboxydothermus hydrogenoformans Z-2901 PAP2 family protein YP_360758.1 1735195 R 246194 CDS YP_360759.1 78042849 3727103 complement(1735870..1736397) 1 NC_007503.1 identified by similarity to SP:P35158; match to protein family HMM PF07670; spore maturation protein B 1736397 3727103 CHY_1940 Carboxydothermus hydrogenoformans Z-2901 spore maturation protein B YP_360759.1 1735870 R 246194 CDS YP_360760.1 78043609 3728820 complement(1736399..1736977) 1 NC_007503.1 identified by similarity to SP:P35157; match to protein family HMM PF07670; spore maturation protein A 1736977 3728820 CHY_1941 Carboxydothermus hydrogenoformans Z-2901 spore maturation protein A YP_360760.1 1736399 R 246194 CDS YP_360761.1 78043441 3728904 complement(1736895..1737017) 1 NC_007503.1 hypothetical protein 1737017 3728904 CHY_1942 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360761.1 1736895 R 246194 CDS YP_360762.1 78042729 3726940 complement(1737137..1737562) 1 NC_007503.1 identified by similarity to OMNI:NTL01TT1234; hypothetical protein 1737562 3726940 CHY_1943 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360762.1 1737137 R 246194 CDS YP_360763.1 78044626 3727747 complement(1737579..1738187) 1 NC_007503.1 hypothetical protein 1738187 3727747 CHY_1944 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360763.1 1737579 R 246194 CDS YP_360764.1 78043897 3726520 complement(1738211..1738789) 1 NC_007503.1 identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 1738789 scpB 3726520 scpB Carboxydothermus hydrogenoformans Z-2901 segregation and condensation protein B YP_360764.1 1738211 R 246194 CDS YP_360765.1 78043146 3728509 complement(1738740..1739459) 1 NC_007503.1 identified by similarity to GB:AAM24548.1; match to protein family HMM PF02616; segregation and condensation protein A 1739459 scpA 3728509 scpA Carboxydothermus hydrogenoformans Z-2901 segregation and condensation protein A YP_360765.1 1738740 R 246194 CDS YP_360766.1 78043829 3728439 complement(1739465..1740445) 1 NC_007503.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1740445 trpS 3728439 trpS Carboxydothermus hydrogenoformans Z-2901 tryptophanyl-tRNA synthetase YP_360766.1 1739465 R 246194 CDS YP_360767.1 78043196 3728716 complement(1740458..1741090) 1 NC_007503.1 identified by match to protein family HMM PF02163; M50 family peptidase 1741090 3728716 CHY_1948 Carboxydothermus hydrogenoformans Z-2901 M50 family peptidase YP_360767.1 1740458 R 246194 CDS YP_360768.1 78044937 3728062 complement(1741102..1743696) 1 NC_007503.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01368; match to protein family HMM PF01743; poly(A) polymerase 1743696 3728062 CHY_1949 Carboxydothermus hydrogenoformans Z-2901 poly(A) polymerase YP_360768.1 1741102 R 246194 CDS YP_360769.1 78044384 3727502 complement(1743746..1744816) 1 NC_007503.1 identified by similarity to SP:P39570; match to protein family HMM PF01490; match to protein family HMM PF03845; match to protein family HMM TIGR00912; spore germination protein 1744816 3727502 CHY_1950 Carboxydothermus hydrogenoformans Z-2901 spore germination protein YP_360769.1 1743746 R 246194 CDS YP_360770.1 78044590 3727711 complement(1744871..1746424) 1 NC_007503.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 1746424 lysA 3727711 lysA Carboxydothermus hydrogenoformans Z-2901 diaminopimelate decarboxylase YP_360770.1 1744871 R 246194 CDS YP_360771.1 78042701 3726951 complement(1746570..1747556) 1 NC_007503.1 identified by similarity to SP:P11568; match to protein family HMM PF01869; match to protein family HMM TIGR00241; CoA-substrate-specific enzyme activase 1747556 3726951 CHY_1952 Carboxydothermus hydrogenoformans Z-2901 CoA-substrate-specific enzyme activase YP_360771.1 1746570 R 246194 CDS YP_360772.1 78043464 3728848 complement(1747528..1748643) 1 NC_007503.1 identified by similarity to GB:AAM25018.1; hypothetical protein 1748643 3728848 CHY_1953 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360772.1 1747528 R 246194 CDS YP_360773.1 78044065 3727181 complement(1748615..1749595) 1 NC_007503.1 identified by similarity to GB:AAM25019.1; hypothetical protein 1749595 3727181 CHY_1954 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360773.1 1748615 R 246194 CDS YP_360774.1 78045004 3728129 complement(1749645..1750001) 1 NC_007503.1 identified by similarity to SP:P40870; match to protein family HMM PF03862; stage V sporulation protein AE 1750001 3728129 CHY_1955 Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein AE YP_360774.1 1749645 R 246194 CDS YP_360775.1 78043689 3726252 complement(1750013..1751005) 1 NC_007503.1 identified by similarity to SP:P40869; stage V sporulation protein AD 1751005 3726252 CHY_1956 Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein AD YP_360775.1 1750013 R 246194 CDS YP_360776.1 78043198 3728561 complement(1751002..1751445) 1 NC_007503.1 identified by similarity to SP:P40868; match to protein family HMM PF03862; stage V sporulation protein AC 1751445 3728561 CHY_1957 Carboxydothermus hydrogenoformans Z-2901 stage V sporulation protein AC YP_360776.1 1751002 R 246194 CDS YP_360777.1 78042860 3727075 complement(1751512..1751706) 1 NC_007503.1 identified by similarity to GB:AAM24542.1; match to protein family HMM PF07311; hypothetical protein 1751706 3727075 CHY_1958 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360777.1 1751512 R 246194 CDS YP_360778.1 78043803 3726621 complement(1751822..1752595) 1 NC_007503.1 identified by similarity to SP:P07860; similarity to SP:P19940; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; RNA polymerase sigma-F factor 1752595 sigF 3726621 sigF Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma-F factor YP_360778.1 1751822 R 246194 CDS YP_360779.1 78044354 3727472 complement(1752592..1753020) 1 NC_007503.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 1753020 3727472 CHY_1960 Carboxydothermus hydrogenoformans Z-2901 anti-sigma F factor YP_360779.1 1752592 R 246194 CDS YP_360780.1 78043970 3726750 complement(1753010..1753351) 1 NC_007503.1 identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377; anti-sigma F factor antagonist 1753351 3726750 CHY_1961 Carboxydothermus hydrogenoformans Z-2901 anti-sigma F factor antagonist YP_360780.1 1753010 R 246194 CDS YP_360781.1 78043555 3726780 complement(1753451..1754584) 1 NC_007503.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1754584 3726780 CHY_1962 Carboxydothermus hydrogenoformans Z-2901 D-alanyl-D-alanine carboxypeptidase YP_360781.1 1753451 R 246194 CDS YP_360782.1 78044235 3727352 complement(1754657..1755823) 1 NC_007503.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1755823 deoB 3727352 deoB Carboxydothermus hydrogenoformans Z-2901 phosphopentomutase YP_360782.1 1754657 R 246194 CDS YP_360783.1 78042632 3727118 complement(1755835..1756698) 1 NC_007503.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD 1756698 xerD 3727118 xerD Carboxydothermus hydrogenoformans Z-2901 tyrosine recombinase XerD YP_360783.1 1755835 R 246194 CDS YP_360784.1 78043505 3726612 complement(1756708..1757322) 1 NC_007503.1 identified by similarity to SP:P37873; stage II sporulation protein M 1757322 3726612 CHY_1965 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein M YP_360784.1 1756708 R 246194 CDS YP_360785.1 78044563 3727682 complement(1757379..1758035) 1 NC_007503.1 identified by similarity to OMNI:NTL01MK0780; hypothetical protein 1758035 3727682 CHY_1966 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360785.1 1757379 R 246194 CDS YP_360786.1 78044699 3727821 complement(1758028..1759116) 1 NC_007503.1 identified by similarity to GB:AAM24533.1; hypothetical protein 1759116 3727821 CHY_1967 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360786.1 1758028 R 246194 CDS YP_360787.1 78044265 3727382 complement(1759211..1759408) 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 1759408 3727382 CHY_1968 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_360787.1 1759211 R 246194 CDS YP_360788.1 78043667 3726698 complement(1759413..1760936) 1 NC_007503.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 1760936 3726698 CHY_1969 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_360788.1 1759413 R 246194 CDS YP_360789.1 78044588 3727709 complement(1760958..1761518) 1 NC_007503.1 identified by match to protein family HMM PF01558; keto/oxoacid ferredoxin oxidoreductase subunit gamma 1761518 3727709 CHY_1970 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit gamma YP_360789.1 1760958 R 246194 CDS YP_360790.1 78044234 3727351 complement(1761518..1762255) 1 NC_007503.1 identified by match to protein family HMM PF02775; keto/oxoacid ferredoxin oxidoreductase subunit beta 1762255 3727351 CHY_1971 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit beta YP_360790.1 1761518 R 246194 CDS YP_360791.1 78044828 3727953 complement(1762256..1763323) 1 NC_007503.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 1763323 3727953 CHY_1972 Carboxydothermus hydrogenoformans Z-2901 2-ketoisovalerate ferredoxin reductase YP_360791.1 1762256 R 246194 CDS YP_360792.1 78045012 3728137 complement(1763320..1763529) 1 NC_007503.1 identified by match to protein family HMM PF00037; keto/oxoacid ferredoxin oxidoreductase subunit delta 1763529 3728137 CHY_1973 Carboxydothermus hydrogenoformans Z-2901 keto/oxoacid ferredoxin oxidoreductase subunit delta YP_360792.1 1763320 R 246194 CDS YP_360793.1 78043881 3726504 complement(1763628..1764407) 1 NC_007503.1 identified by similarity to GB:AAM24532.1; hypothetical protein 1764407 3726504 CHY_1974 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360793.1 1763628 R 246194 CDS YP_360794.1 78043116 3726337 complement(1764444..1765121) 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 1765121 3726337 CHY_1975 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_360794.1 1764444 R 246194 CDS YP_360795.1 78045008 3728133 complement(1765132..1766013) 1 NC_007503.1 identified by similarity to GB:AAM24530.1; hypothetical protein 1766013 3728133 CHY_1976 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360795.1 1765132 R 246194 CDS YP_360796.1 78044115 3727231 complement(1766033..1767154) 1 NC_007503.1 identified by match to protein family HMM PF04263; thiamin pyrophosphokinase catalytic subunit 1767154 3727231 CHY_1977 Carboxydothermus hydrogenoformans Z-2901 thiamin pyrophosphokinase catalytic subunit YP_360796.1 1766033 R 246194 CDS YP_360797.1 78043545 3726731 complement(1767243..1768034) 1 NC_007503.1 identified by similarity to GP:7576238; match to protein family HMM PF00072; stage 0 sporulation protein A 1768034 spo0A 3726731 spo0A Carboxydothermus hydrogenoformans Z-2901 stage 0 sporulation protein A YP_360797.1 1767243 R 246194 CDS YP_360798.1 78042638 3727124 complement(1767977..1769314) 1 NC_007503.1 identified by similarity to SP:P17896; match to protein family HMM PF05580; stage IV sporulation protein B 1769314 3727124 CHY_1979 Carboxydothermus hydrogenoformans Z-2901 stage IV sporulation protein B YP_360798.1 1767977 R 246194 CDS YP_360799.1 78044098 3727214 complement(1769439..1771097) 1 NC_007503.1 identified by match to protein family HMM TIGR00634; DNA repair protein RecN 1771097 recN 3727214 recN Carboxydothermus hydrogenoformans Z-2901 DNA repair protein RecN YP_360799.1 1769439 R 246194 CDS YP_360800.1 78044720 3727842 complement(1771106..1771558) 1 NC_007503.1 identified by match to protein family HMM PF01316; match to protein family HMM PF02863; match to protein family HMM TIGR01529; arginine repressor ArgR 1771558 argR 3727842 argR Carboxydothermus hydrogenoformans Z-2901 arginine repressor ArgR YP_360800.1 1771106 R 246194 CDS YP_360801.1 78043668 3726699 complement(1771527..1772129) 1 NC_007503.1 identified by similarity to OMNI:NTL01LM1654; match to protein family HMM PF06962; hypothetical protein 1772129 3726699 CHY_1982 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360801.1 1771527 R 246194 CDS YP_360802.1 78043064 3726381 complement(1772122..1772964) 1 NC_007503.1 identified by match to protein family HMM PF01513; ATP-NAD kinase 1772964 ppnK 3726381 ppnK Carboxydothermus hydrogenoformans Z-2901 ATP-NAD kinase YP_360802.1 1772122 R 246194 CDS YP_360803.1 78043160 3728679 complement(1773068..1773868) 1 NC_007503.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 1773868 3728679 CHY_1984 Carboxydothermus hydrogenoformans Z-2901 hemolysin A YP_360803.1 1773068 R 246194 CDS YP_360804.1 78045077 3728203 complement(1773865..1775733) 1 NC_007503.1 identified by similarity to SP:P77488; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204; 1-deoxy-D-xylulose-5-phosphate synthase 1775733 dxs 3728203 dxs Carboxydothermus hydrogenoformans Z-2901 1-deoxy-D-xylulose-5-phosphate synthase YP_360804.1 1773865 R 246194 CDS YP_360805.1 78045000 3728125 complement(1775747..1776277) 1 NC_007503.1 identified by similarity to GB:AAO36123.1; hypothetical protein 1776277 3728125 CHY_1986 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360805.1 1775747 R 246194 CDS YP_360806.1 78043893 3726516 complement(1776463..1776588) 1 NC_007503.1 hypothetical protein 1776588 3726516 CHY_1987 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360806.1 1776463 R 246194 CDS YP_360807.1 78044434 3727552 complement(1777035..1777922) 1 NC_007503.1 identified by similarity to SP:Q08291; match to protein family HMM PF00348; geranyltranstransferase 1777922 3727552 CHY_1988 Carboxydothermus hydrogenoformans Z-2901 geranyltranstransferase YP_360807.1 1777035 R 246194 CDS YP_360808.1 78044869 3727994 complement(1777935..1778168) 1 NC_007503.1 identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit 1778168 xseB 3727994 xseB Carboxydothermus hydrogenoformans Z-2901 exodeoxyribonuclease VII small subunit YP_360808.1 1777935 R 246194 CDS YP_360809.1 78043300 3728605 complement(1778158..1779576) 1 NC_007503.1 identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1779576 xseA 3728605 xseA Carboxydothermus hydrogenoformans Z-2901 exodeoxyribonuclease VII large subunit YP_360809.1 1778158 R 246194 CDS YP_360810.1 78043225 3728589 complement(1779702..1781096) 1 NC_007503.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 1781096 gltA 3728589 gltA Carboxydothermus hydrogenoformans Z-2901 oxidoreductase YP_360810.1 1779702 R 246194 CDS YP_360811.1 78045020 3728145 complement(1781101..1781937) 1 NC_007503.1 identified by match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin-NADP reductase 1781937 3728145 CHY_1992 Carboxydothermus hydrogenoformans Z-2901 ferredoxin-NADP reductase YP_360811.1 1781101 R 246194 CDS YP_360812.1 78044266 3727383 complement(1781990..1782949) 1 NC_007503.1 glycoprotease 1782949 3727383 CHY_1993 Carboxydothermus hydrogenoformans Z-2901 glycoprotease YP_360812.1 1781990 R 246194 CDS YP_360813.1 78044961 3728086 complement(1782949..1783383) 1 NC_007503.1 identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB 1783383 nusB 3728086 nusB Carboxydothermus hydrogenoformans Z-2901 transcription antitermination factor NusB YP_360813.1 1782949 R 246194 CDS YP_360814.1 78043249 3728632 complement(1783401..1783613) 1 NC_007503.1 hypothetical protein 1783613 3728632 CHY_1995 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360814.1 1783401 R 246194 CDS YP_360815.1 78043807 3726625 complement(1783627..1784166) 1 NC_007503.1 hypothetical protein 1784166 3726625 CHY_1996 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360815.1 1783627 R 246194 CDS YP_360816.1 78044020 3727135 complement(1784212..1784613) 1 NC_007503.1 identified by similarity to OMNI:NTL01TT1198; match to protein family HMM PF03780; hypothetical protein 1784613 3727135 CHY_1997 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360816.1 1784212 R 246194 CDS YP_360817.1 78044886 3728011 complement(1784691..1786040) 1 NC_007503.1 identified by similarity to SP:P49787; match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase 1786040 accC2 3728011 accC2 Carboxydothermus hydrogenoformans Z-2901 acetyl-CoA carboxylase, biotin carboxylase YP_360817.1 1784691 R 246194 CDS YP_360818.1 78042895 3727032 complement(1786100..1787953) 1 NC_007503.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 1787953 oadA 3727032 oadA Carboxydothermus hydrogenoformans Z-2901 pyruvate carboxylase subunit B YP_360818.1 1786100 R 246194 CDS YP_360819.1 78044704 3727826 complement(1788075..1788566) 1 NC_007503.1 identified by similarity to OMNI:AF2004; hypothetical protein 1788566 3727826 CHY_2000 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360819.1 1788075 R 246194 CDS YP_360820.1 78045007 3728132 complement(1788526..1789107) 1 NC_007503.1 identified by similarity to SP:P49784; sporulation protein 1789107 3728132 CHY_2001 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_360820.1 1788526 R 246194 CDS YP_360821.1 78044557 3727676 complement(1789104..1789586) 1 NC_007503.1 hypothetical protein 1789586 3727676 CHY_2002 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360821.1 1789104 R 246194 CDS YP_360822.1 78045133 3728259 complement(1789597..1790724) 1 NC_007503.1 identified by similarity to SP:P49782; sporulation protein 1790724 3728259 CHY_2003 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_360822.1 1789597 R 246194 CDS YP_360823.1 78044001 3726236 complement(1790735..1791124) 1 NC_007503.1 identified by similarity to SP:P49781; sporulation protein 1791124 3726236 CHY_2004 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_360823.1 1790735 R 246194 CDS YP_360824.1 78043930 3726358 complement(1791134..1791334) 1 NC_007503.1 identified by similarity to SP:P49780; match to protein family HMM PF06686; sporulation protein 1791334 3726358 CHY_2005 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_360824.1 1791134 R 246194 CDS YP_360825.1 78043562 3726788 complement(1791347..1791850) 1 NC_007503.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 1791850 3726788 CHY_2006 Carboxydothermus hydrogenoformans Z-2901 stage III sporulation protein SpoAB YP_360825.1 1791347 R 246194 CDS YP_360826.1 78044260 3727377 complement(1791852..1792799) 1 NC_007503.1 identified by similarity to SP:Q01367; sporulation protein 1792799 3727377 CHY_2007 Carboxydothermus hydrogenoformans Z-2901 sporulation protein YP_360826.1 1791852 R 246194 CDS YP_360827.1 78043348 3728537 1792892..1793563 1 NC_007503.1 KID repeat-containing protein 1793563 3728537 CHY_2008 Carboxydothermus hydrogenoformans Z-2901 KID repeat-containing protein YP_360827.1 1792892 D 246194 CDS YP_360828.1 78042777 3726871 complement(1793582..1793998) 1 NC_007503.1 identified by similarity to GB:AAO36135.1; hypothetical protein 1793998 3726871 CHY_2009 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360828.1 1793582 R 246194 CDS YP_360829.1 78044517 3727636 complement(1794053..1795882) 1 NC_007503.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1795882 glmS 3727636 glmS Carboxydothermus hydrogenoformans Z-2901 glucosamine--fructose-6-phosphate aminotransferase YP_360829.1 1794053 R 246194 CDS YP_360830.1 78043613 3728824 complement(1795994..1796128) 1 NC_007503.1 hypothetical protein 1796128 3728824 CHY_2011 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360830.1 1795994 R 246194 CDS YP_360831.1 78043024 3726478 complement(1796464..1797795) 1 NC_007503.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase 1797795 glmM 3726478 glmM Carboxydothermus hydrogenoformans Z-2901 phosphoglucosamine mutase YP_360831.1 1796464 R 246194 CDS YP_360832.1 78044846 3727971 complement(1797795..1799396) 1 NC_007503.1 identified by similarity to GB:AAN66759.1; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; hypothetical protein 1799396 3727971 CHY_2013 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360832.1 1797795 R 246194 CDS YP_360833.1 78044147 3727263 complement(1799443..1799808) 1 NC_007503.1 identified by similarity to GB:AAM25361.1; hypothetical protein 1799808 3727263 CHY_2014 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360833.1 1799443 R 246194 CDS YP_360834.1 78043546 3726732 complement(1799812..1800609) 1 NC_007503.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159; hypothetical protein 1800609 3726732 CHY_2015 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360834.1 1799812 R 246194 CDS YP_360835.1 78045234 3728360 complement(1800706..1802007) 1 NC_007503.1 identified by similarity to SP:P33780; match to protein family HMM PF00860; match to protein family HMM TIGR00801; uracil transporter 1802007 3728360 CHY_2016 Carboxydothermus hydrogenoformans Z-2901 uracil transporter YP_360835.1 1800706 R 246194 CDS YP_360836.1 78042979 3726549 complement(1802094..1802486) 1 NC_007503.1 identified by match to protein family HMM PF02625; xanthine dehydrogenase accessory factor-related protein 1802486 3726549 CHY_2017 Carboxydothermus hydrogenoformans Z-2901 xanthine dehydrogenase accessory factor-related protein YP_360836.1 1802094 R 246194 CDS YP_360837.1 78044238 3727355 complement(1802422..1803132) 1 NC_007503.1 hypothetical protein 1803132 3727355 CHY_2018 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360837.1 1802422 R 246194 CDS YP_360838.1 78044124 3727240 1803333..1804610 1 NC_007503.1 identified by match to protein family HMM PF02040; arsenic transporter family protein 1804610 3727240 CHY_2019 Carboxydothermus hydrogenoformans Z-2901 arsenic transporter family protein YP_360838.1 1803333 D 246194 CDS YP_360839.1 78042995 3726487 1804709..1805980 1 NC_007503.1 identified by match to protein family HMM PF02040; arsenic transporter family protein 1805980 3726487 CHY_2020 Carboxydothermus hydrogenoformans Z-2901 arsenic transporter family protein YP_360839.1 1804709 D 246194 CDS YP_360840.1 78045018 3728143 1805993..1806922 1 NC_007503.1 identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase 1806922 3728143 CHY_2021 Carboxydothermus hydrogenoformans Z-2901 ADP-ribosylglycohydrolase YP_360840.1 1805993 D 246194 CDS YP_360841.1 78042822 3726839 complement(1806864..1808834) 1 NC_007503.1 identified by match to protein family HMM PF00497; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; ABC transporter substrate-binding protein 1808834 3726839 CHY_2022 Carboxydothermus hydrogenoformans Z-2901 ABC transporter substrate-binding protein YP_360841.1 1806864 R 246194 CDS YP_360842.1 78044687 3727809 1808992..1809375 1 NC_007503.1 hypothetical protein 1809375 3727809 CHY_2023 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360842.1 1808992 D 246194 CDS YP_360843.1 78045126 3728252 1809366..1809497 1 NC_007503.1 hypothetical protein 1809497 3728252 CHY_2024 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360843.1 1809366 D 246194 CDS YP_360844.1 78043410 3728872 1809391..1809528 1 NC_007503.1 hypothetical protein 1809528 3728872 CHY_2025 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360844.1 1809391 D 246194 CDS YP_360845.1 78045035 3728160 complement(1809738..1809959) 1 NC_007503.1 hypothetical protein 1809959 3728160 CHY_2026 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360845.1 1809738 R 246194 CDS YP_360846.1 78043664 3726695 complement(1810074..1810586) 1 NC_007503.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1810586 apt 3726695 apt Carboxydothermus hydrogenoformans Z-2901 adenine phosphoribosyltransferase YP_360846.1 1810074 R 246194 CDS YP_360847.1 78042857 3727072 1810781..1812433 1 NC_007503.1 identified by similarity to PIR:E72285; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF01966; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277; diguanylate cyclase 1812433 3727072 CHY_2028 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_360847.1 1810781 D 246194 CDS YP_360848.1 78045097 3728223 complement(1812401..1813750) 1 NC_007503.1 identified by similarity to GB:AAM25312.1; match to protein family HMM PF01189; match to protein family HMM TIGR00446; NOL1/NOP2/sun family protein 1813750 3728223 CHY_2029 Carboxydothermus hydrogenoformans Z-2901 NOL1/NOP2/sun family protein YP_360848.1 1812401 R 246194 CDS YP_360849.1 78043265 3728551 1813870..1814451 1 NC_007503.1 identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1814451 3728551 CHY_2030 Carboxydothermus hydrogenoformans Z-2901 TetR family transcriptional regulator YP_360849.1 1813870 D 246194 CDS YP_360850.1 78042869 3727084 1814613..1817285 1 NC_007503.1 identified by similarity to SP:P96797; similarity to GB:AAM07752.1; match to protein family HMM PF01565; match to protein family HMM PF02754; heterodisulfide reductase iron-sulfur subunit domain-containing protein 1817285 3727084 CHY_2031 Carboxydothermus hydrogenoformans Z-2901 heterodisulfide reductase iron-sulfur subunit domain-containing protein YP_360850.1 1814613 D 246194 CDS YP_360851.1 78044219 3727336 complement(1817344..1818543) 1 NC_007503.1 identified by similarity to PIR:G82445; match to protein family HMM PF07690; transporter 1818543 3727336 CHY_2032 Carboxydothermus hydrogenoformans Z-2901 transporter YP_360851.1 1817344 R 246194 CDS YP_360852.1 78042994 3726486 complement(1818845..1820374) 1 NC_007503.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; sodium:solute transporter 1820374 3726486 CHY_2033 Carboxydothermus hydrogenoformans Z-2901 sodium:solute transporter YP_360852.1 1818845 R 246194 CDS YP_360853.1 78045117 3728243 complement(1820377..1820712) 1 NC_007503.1 identified by similarity to GB:BAC14399.1; match to protein family HMM PF04341; hypothetical protein 1820712 3728243 CHY_2034 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360853.1 1820377 R 246194 CDS YP_360854.1 78043289 3728732 1820977..1822872 1 NC_007503.1 identified by similarity to PIR:F70480; match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445; hypothetical protein 1822872 3728732 CHY_2035 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360854.1 1820977 D 246194 CDS YP_360855.1 78044638 3727760 1822887..1823555 1 NC_007503.1 identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; DNA polymerase III subunit epsilon 1823555 3727760 CHY_2036 Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit epsilon YP_360855.1 1822887 D 246194 CDS YP_360856.1 78044475 3727594 1823679..1826726 1 NC_007503.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02754; hypothetical protein 1826726 3727594 CHY_2037 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360856.1 1823679 D 246194 CDS YP_360857.1 78043909 3726532 complement(1826780..1827277) 1 NC_007503.1 identified by match to protein family HMM PF05103; cell division protein 1827277 3726532 CHY_2038 Carboxydothermus hydrogenoformans Z-2901 cell division protein YP_360857.1 1826780 R 246194 CDS YP_360858.1 78043754 3726280 complement(1827296..1828036) 1 NC_007503.1 identified by similarity to PIR:AC2167; match to protein family HMM PF01479; S4 domain-containing protein 1828036 3726280 CHY_2039 Carboxydothermus hydrogenoformans Z-2901 S4 domain-containing protein YP_360858.1 1827296 R 246194 CDS YP_360859.1 78044756 3727880 complement(1828041..1828304) 1 NC_007503.1 identified by similarity to GB:BAC08086.1; match to protein family HMM PF02325; hypothetical protein 1828304 3727880 CHY_2040 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360859.1 1828041 R 246194 CDS YP_360860.1 78042830 3726847 complement(1828318..1829097) 1 NC_007503.1 identified by match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1829097 proC 3726847 proC Carboxydothermus hydrogenoformans Z-2901 pyrroline-5-carboxylate reductase YP_360860.1 1828318 R 246194 CDS YP_360861.1 78044908 3728033 complement(1829113..1829526) 1 NC_007503.1 identified by similarity to GB:AAM24803.1; match to protein family HMM PF04472; hypothetical protein 1829526 3728033 CHY_2042 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360861.1 1829113 R 246194 CDS YP_360862.1 78044191 3727307 complement(1829541..1830215) 1 NC_007503.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein 1830215 3727307 CHY_2043 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360862.1 1829541 R 246194 CDS YP_360863.1 78044250 3727367 complement(1830239..1831180) 1 NC_007503.1 hypothetical protein 1831180 3727367 CHY_2044 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360863.1 1830239 R 246194 CDS YP_360864.1 78043312 3728617 complement(1831194..1831853) 1 NC_007503.1 identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU 1831853 phoU 3728617 phoU Carboxydothermus hydrogenoformans Z-2901 phosphate transport system regulatory protein PhoU YP_360864.1 1831194 R 246194 CDS YP_360865.1 78043135 3728673 complement(1831857..1833206) 1 NC_007503.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box histidine kinase 1833206 3728673 CHY_2046 Carboxydothermus hydrogenoformans Z-2901 sensory box histidine kinase YP_360865.1 1831857 R 246194 CDS YP_360866.1 78044728 3727851 complement(1833209..1833904) 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1833904 3727851 CHY_2047 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_360866.1 1833209 R 246194 CDS YP_360867.1 78043884 3726507 complement(1833882..1834712) 1 NC_007503.1 identified by similarity to GP:29897546; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 1834712 3726507 CHY_2048 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360867.1 1833882 R 246194 CDS YP_360868.1 78043144 3728507 complement(1834712..1836226) 1 NC_007503.1 identified by similarity to GB:AAM23978.1; match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase 1836226 3728507 CHY_2049 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_360868.1 1834712 R 246194 CDS YP_360869.1 78045054 3728180 complement(1836310..1836819) 1 NC_007503.1 identified by similarity to SP:P39329; match to protein family HMM PF04055; match to protein family HMM TIGR02491; anaerobic ribonucleoside-triphosphate reductase activating protein 1836819 nrdG 3728180 nrdG Carboxydothermus hydrogenoformans Z-2901 anaerobic ribonucleoside-triphosphate reductase activating protein YP_360869.1 1836310 R 246194 CDS YP_360870.1 78044308 3727425 complement(1836819..1838834) 1 NC_007503.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1838834 nrdD 3727425 nrdD Carboxydothermus hydrogenoformans Z-2901 anaerobic ribonucleoside triphosphate reductase YP_360870.1 1836819 R 246194 CDS YP_360871.1 78042848 3727102 complement(1838835..1839299) 1 NC_007503.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 1839299 nrdR 3727102 nrdR Carboxydothermus hydrogenoformans Z-2901 transcriptional regulator NrdR YP_360871.1 1838835 R 246194 CDS YP_360872.1 78044486 3727605 complement(1839414..1839671) 1 NC_007503.1 identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein 1839671 3727605 CHY_2053 Carboxydothermus hydrogenoformans Z-2901 PRC-barrel domain-containing protein YP_360872.1 1839414 R 246194 CDS YP_360873.1 78043534 3726720 complement(1839718..1840197) 1 NC_007503.1 identified by similarity to SP:P39151; stage II sporulation protein R 1840197 3726720 CHY_2054 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein R YP_360873.1 1839718 R 246194 CDS YP_360874.1 78043932 3726360 complement(1840292..1841065) 1 NC_007503.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1841065 sigG 3726360 sigG Carboxydothermus hydrogenoformans Z-2901 sporulation sigma factor SigG YP_360874.1 1840292 R 246194 CDS YP_360875.1 78044685 3727807 complement(1841172..1841885) 1 NC_007503.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1841885 sigE 3727807 sigE Carboxydothermus hydrogenoformans Z-2901 sporulation sigma factor SigE YP_360875.1 1841172 R 246194 CDS YP_360876.1 78044280 3727397 complement(1841901..1842674) 1 NC_007503.1 identified by similarity to SP:Q45832; match to protein family HMM PF03419; sporulation specific protein SpoIIGA 1842674 3727397 CHY_2057 Carboxydothermus hydrogenoformans Z-2901 sporulation specific protein SpoIIGA YP_360876.1 1841901 R 246194 CDS YP_360877.1 78044963 3728088 complement(1842765..1843796) 1 NC_007503.1 Selenoprotein. identified by similarity to SP:P16456; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00476; selenide, water dikinase 1843796 selD 3728088 selD Carboxydothermus hydrogenoformans Z-2901 selenide, water dikinase YP_360877.1 1842765 R 246194 CDS YP_360878.1 78042840 3727094 complement(1843876..1844676) 1 NC_007503.1 hypothetical protein 1844676 3727094 CHY_2059 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360878.1 1843876 R 246194 CDS YP_360879.1 78043427 3728792 complement(1844706..1845764) 1 NC_007503.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1845764 ftsZ 3728792 ftsZ Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsZ YP_360879.1 1844706 R 246194 CDS YP_360880.1 78044602 3727723 complement(1845785..1847017) 1 NC_007503.1 identified by similarity to SP:P28264; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA 1847017 ftsA 3727723 ftsA Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsA YP_360880.1 1845785 R 246194 CDS YP_360881.1 78042834 3727088 complement(1847136..1847465) 1 NC_007503.1 identified by similarity to SP:P28265; match to protein family HMM PF06947; small basic protein 1847465 sbp 3727088 sbp Carboxydothermus hydrogenoformans Z-2901 small basic protein YP_360881.1 1847136 R 246194 CDS YP_360882.1 78044418 3727536 complement(1847469..1848164) 1 NC_007503.1 identified by similarity to GB:AAM24844.1; match to protein family HMM PF05949; hypothetical protein 1848164 3727536 CHY_2063 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360882.1 1847469 R 246194 CDS YP_360883.1 78042894 3727031 complement(1848166..1848882) 1 NC_007503.1 identified by match to protein family HMM PF05949; hypothetical protein 1848882 3727031 CHY_2064 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360883.1 1848166 R 246194 CDS YP_360884.1 78043235 3728599 complement(1848848..1849594) 1 NC_007503.1 identified by similarity to PIR:D81201; cell division protein FtsQ 1849594 3728599 CHY_2065 Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsQ YP_360884.1 1848848 R 246194 CDS YP_360885.1 78043843 3726584 complement(1849648..1850910) 1 NC_007503.1 identified by similarity to SP:P19670; match to protein family HMM PF00275; match to protein family HMM TIGR01072; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 1850910 murAB 3726584 murAB Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 YP_360885.1 1849648 R 246194 CDS YP_360886.1 78044048 3727163 complement(1850936..1851844) 1 NC_007503.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1851844 murB 3727163 murB Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylenolpyruvoylglucosamine reductase YP_360886.1 1850936 R 246194 CDS YP_360887.1 78044616 3727737 complement(1851849..1853243) 1 NC_007503.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--L-alanine ligase 1853243 murC 3727737 murC Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylmuramate--L-alanine ligase YP_360887.1 1851849 R 246194 CDS YP_360888.1 78044085 3727201 complement(1853244..1854359) 1 NC_007503.1 identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase 1854359 murG 3727201 murG Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase YP_360888.1 1853244 R 246194 CDS YP_360889.1 78044656 3727778 complement(1854359..1855486) 1 NC_007503.1 identified by similarity to SP:P07373; match to protein family HMM PF01098; cell division protein FtsW 1855486 ftsW 3727778 ftsW Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsW YP_360889.1 1854359 R 246194 CDS YP_360890.1 78042912 3727011 complement(1855488..1856843) 1 NC_007503.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1856843 murD 3727011 murD Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_360890.1 1855488 R 246194 CDS YP_360891.1 78043466 3728850 complement(1856871..1857848) 1 NC_007503.1 identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase 1857848 mraY 3728850 mraY Carboxydothermus hydrogenoformans Z-2901 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_360891.1 1856871 R 246194 CDS YP_360892.1 78042842 3727096 complement(1857835..1859211) 1 NC_007503.1 identified by similarity to SP:P96613; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1859211 murF 3727096 murF Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_360892.1 1857835 R 246194 CDS YP_360893.1 78044715 3727837 complement(1859208..1860686) 1 NC_007503.1 identified by similarity to SP:Q03523; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 1860686 murE 3727837 murE Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase YP_360893.1 1859208 R 246194 CDS YP_360894.1 78043919 3726347 complement(1860768..1862987) 1 NC_007503.1 identified by similarity to SP:Q07868; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214; penicillin-binding protein 2B 1862987 pbpB 3726347 pbpB Carboxydothermus hydrogenoformans Z-2901 penicillin-binding protein 2B YP_360894.1 1860768 R 246194 CDS YP_360895.1 78043139 3728677 complement(1863014..1863442) 1 NC_007503.1 hypothetical protein 1863442 3728677 CHY_2076 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360895.1 1863014 R 246194 CDS YP_360896.1 78045055 3728181 1863294..1863500 1 NC_007503.1 hypothetical protein 1863500 3728181 CHY_2077 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360896.1 1863294 D 246194 CDS YP_360897.1 78043538 3726724 complement(1863455..1864390) 1 NC_007503.1 identified by similarity to SP:Q8R9F9; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW 1864390 mraW 3726724 mraW Carboxydothermus hydrogenoformans Z-2901 S-adenosyl-methyltransferase MraW YP_360897.1 1863455 R 246194 CDS YP_360898.1 78042864 3727079 complement(1864402..1864833) 1 NC_007503.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1864833 mraZ 3727079 mraZ Carboxydothermus hydrogenoformans Z-2901 cell division protein MraZ YP_360898.1 1864402 R 246194 CDS YP_360899.1 78044749 3727873 complement(1865000..1866247) 1 NC_007503.1 identified by match to protein family HMM PF03916; molybdopterin oxidoreductase membrane subunit 1866247 3727873 CHY_2080 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase membrane subunit YP_360899.1 1865000 R 246194 CDS YP_360900.1 78044498 3727617 complement(1866262..1866948) 1 NC_007503.1 identified by similarity to OMNI:AF0175; match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur binding subunit 1866948 3727617 CHY_2081 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_360900.1 1866262 R 246194 CDS YP_360901.1 78044113 3727229 complement(1866948..1869509) 1 NC_007503.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; respiratory nitrate reductase subunit alpha 1869509 ndrA 3727229 ndrA Carboxydothermus hydrogenoformans Z-2901 respiratory nitrate reductase subunit alpha YP_360901.1 1866948 R 246194 CDS YP_360902.1 78043671 3726702 complement(1869567..1869908) 1 NC_007503.1 identified by similarity to PIR:S77003; hypothetical protein 1869908 3726702 CHY_2083 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360902.1 1869567 R 246194 CDS YP_360903.1 78043205 3728569 complement(1870000..1870797) 1 NC_007503.1 identified by similarity to SP:O34411; match to protein family HMM PF02811; match to protein family HMM TIGR01856; histidinol phosphatase 1870797 hisJ 3728569 hisJ Carboxydothermus hydrogenoformans Z-2901 histidinol phosphatase YP_360903.1 1870000 R 246194 CDS YP_360904.1 78045101 3728227 complement(1870790..1871830) 1 NC_007503.1 hypothetical protein 1871830 3728227 CHY_2085 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360904.1 1870790 R 246194 CDS YP_360905.1 78044752 3727876 complement(1871860..1872690) 1 NC_007503.1 identified by similarity to PIR:H75399; hypothetical protein 1872690 3727876 CHY_2086 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360905.1 1871860 R 246194 CDS YP_360906.1 78044006 3726241 complement(1872756..1873445) 1 NC_007503.1 identified by similarity to SP:P18273; match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein 1873445 sfsA 3726241 sfsA Carboxydothermus hydrogenoformans Z-2901 sugar fermentation stimulation protein YP_360906.1 1872756 R 246194 CDS YP_360907.1 78043522 3726571 complement(1873459..1874352) 1 NC_007503.1 identified by similarity to PIR:E83228; match to protein family HMM PF01734; patatin family protein 1874352 3726571 CHY_2088 Carboxydothermus hydrogenoformans Z-2901 patatin family protein YP_360907.1 1873459 R 246194 CDS YP_360908.1 78043795 3726652 complement(1874352..1874918) 1 NC_007503.1 identified by similarity to PIR:T17189; match to protein family HMM PF03358; hypothetical protein 1874918 3726652 CHY_2089 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360908.1 1874352 R 246194 CDS YP_360909.1 78045108 3728234 1875010..1875621 1 NC_007503.1 identified by similarity to OMNI:NTL01TT2019; match to protein family HMM PF02698; hypothetical protein 1875621 3728234 CHY_2090 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360909.1 1875010 D 246194 CDS YP_360910.1 78043030 3726445 complement(1875592..1877142) 1 NC_007503.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF01842; match to protein family HMM PF02954; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199; Fis family transcriptional regulator 1877142 3726445 CHY_2091 Carboxydothermus hydrogenoformans Z-2901 Fis family transcriptional regulator YP_360910.1 1875592 R 246194 CDS YP_360911.1 78043813 3726631 complement(1877100..1877225) 1 NC_007503.1 hypothetical protein 1877225 3726631 CHY_2092 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360911.1 1877100 R 246194 CDS YP_360912.1 78044320 3727437 complement(1877212..1878342) 1 NC_007503.1 identified by similarity to PIR:AC0237; match to protein family HMM PF02687; permease 1878342 3727437 CHY_2093 Carboxydothermus hydrogenoformans Z-2901 permease YP_360912.1 1877212 R 246194 CDS YP_360913.1 78043959 3726739 complement(1878344..1878895) 1 NC_007503.1 hypothetical protein 1878895 3726739 CHY_2094 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360913.1 1878344 R 246194 CDS YP_360914.1 78043136 3728674 complement(1878896..1879585) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1879585 3728674 CHY_2095 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_360914.1 1878896 R 246194 CDS YP_360915.1 78042859 3727074 complement(1879596..1880735) 1 NC_007503.1 identified by match to protein family HMM PF02687; permease 1880735 3727074 CHY_2096 Carboxydothermus hydrogenoformans Z-2901 permease YP_360915.1 1879596 R 246194 CDS YP_360916.1 78044430 3727548 complement(1880852..1881790) 1 NC_007503.1 identified by similarity to GB:AAM24325.1; peptidase,-like protein 1881790 3727548 CHY_2097 Carboxydothermus hydrogenoformans Z-2901 peptidase,-like protein YP_360916.1 1880852 R 246194 CDS YP_360917.1 78044980 3728105 complement(1881792..1882211) 1 NC_007503.1 identified by similarity to PIR:C71037; match to protein family HMM PF03965; hypothetical protein 1882211 3728105 CHY_2098 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360917.1 1881792 R 246194 CDS YP_360918.1 78044413 3727531 complement(1882212..1882670) 1 NC_007503.1 identified by similarity to SP:P54574; match to protein family HMM PF01475; ferric uptake regulation protein 1882670 fur 3727531 fur Carboxydothermus hydrogenoformans Z-2901 ferric uptake regulation protein YP_360918.1 1882212 R 246194 CDS YP_360919.1 78044998 3728123 complement(1882714..1882950) 1 NC_007503.1 identified by similarity to PIR:E70306; hypothetical protein 1882950 3728123 CHY_2100 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360919.1 1882714 R 246194 CDS YP_360920.1 78044481 3727600 complement(1882982..1884157) 1 NC_007503.1 identified by similarity to SP:P38422; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 1884157 3727600 CHY_2101 Carboxydothermus hydrogenoformans Z-2901 D-alanyl-D-alanine carboxypeptidase YP_360920.1 1882982 R 246194 CDS YP_360921.1 78042867 3727082 complement(1884234..1884563) 1 NC_007503.1 identified by similarity to GB:AAM07286.1; match to protein family HMM PF02641; hypothetical protein 1884563 3727082 CHY_2102 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360921.1 1884234 R 246194 CDS YP_360922.1 78043309 3728614 complement(1884564..1884935) 1 NC_007503.1 identified by similarity to GB:AAP28982.1; match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein 1884935 crcB 3728614 crcB Carboxydothermus hydrogenoformans Z-2901 crcB protein YP_360922.1 1884564 R 246194 CDS YP_360923.1 78045202 3728328 complement(1884935..1885339) 1 NC_007503.1 identified by similarity to SP:Q97IQ4; match to protein family HMM PF02537; crcB protein 1885339 3728328 CHY_2104 Carboxydothermus hydrogenoformans Z-2901 crcB protein YP_360923.1 1884935 R 246194 CDS YP_360924.1 78043640 3726768 complement(1885571..1887370) 1 NC_007503.1 identified by similarity to GB:AAM25082.1; match to protein family HMM PF00350; match to protein family HMM PF01926; hypothetical protein 1887370 3726768 CHY_2105 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360924.1 1885571 R 246194 CDS YP_360925.1 78043604 3728757 complement(1887403..1887555) 1 NC_007503.1 identified by similarity to OMNI:NTL01MM1452; hypothetical protein 1887555 3728757 CHY_2106 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360925.1 1887403 R 246194 CDS YP_360926.1 78044073 3727189 complement(1887579..1888739) 1 NC_007503.1 identified by similarity to SP:P26235; match to protein family HMM PF00999; Na+/H+ antiporter 1888739 3727189 CHY_2107 Carboxydothermus hydrogenoformans Z-2901 Na+/H+ antiporter YP_360926.1 1887579 R 246194 CDS YP_360927.1 78043301 3728606 complement(1888964..1889218) 1 NC_007503.1 identified by match to protein family HMM PF04023; FeoA family protein 1889218 3728606 CHY_2108 Carboxydothermus hydrogenoformans Z-2901 FeoA family protein YP_360927.1 1888964 R 246194 CDS YP_360928.1 78043989 3726224 complement(1892446..1893423) 1 NC_007503.1 hypothetical protein 1893423 3726224 CHY_2111 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360928.1 1892446 R 246194 CDS YP_360929.1 78042781 3726876 complement(1899229..1899324) 1 NC_007503.1 hypothetical protein 1899324 3726876 CHY_2115 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360929.1 1899229 R 246194 CDS YP_360930.1 78044319 3727436 complement(1899317..1900078) 1 NC_007503.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1900078 pstB 3727436 pstB Carboxydothermus hydrogenoformans Z-2901 phosphate transporter ATP-binding protein YP_360930.1 1899317 R 246194 CDS YP_360931.1 78044216 3727333 complement(1900421..1900534) 1 NC_007503.1 hypothetical protein 1900534 3727333 CHY_2117 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360931.1 1900421 R 246194 CDS YP_360932.1 78043600 3728753 complement(1900467..1900877) 1 NC_007503.1 hypothetical protein 1900877 3728753 CHY_2118 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360932.1 1900467 R 246194 CDS YP_360933.1 78042680 3726969 complement(1900906..1901019) 1 NC_007503.1 hypothetical protein 1901019 3726969 CHY_2119 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360933.1 1900906 R 246194 CDS YP_360934.1 78043103 3726324 1901045..1902196 1 NC_007503.1 hypothetical protein 1902196 3726324 CHY_2120 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360934.1 1901045 D 246194 CDS YP_360935.1 78045019 3728144 1902198..1904210 1 NC_007503.1 identified by match to protein family HMM PF01935; hypothetical protein 1904210 3728144 CHY_2121 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360935.1 1902198 D 246194 CDS YP_360936.1 78044421 3727539 complement(1904600..1904761) 1 NC_007503.1 hypothetical protein 1904761 3727539 CHY_2122 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360936.1 1904600 R 246194 CDS YP_360937.1 78043568 3726287 complement(1904815..1905936) 1 NC_007503.1 identified by match to protein family HMM TIGR02619; CRISPR-associated protein 1905936 3726287 CHY_2123 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated protein YP_360937.1 1904815 R 246194 CDS YP_360938.1 78042862 3727077 complement(1905956..1907329) 1 NC_007503.1 identified by similarity to GB:CAD84026.1; match to protein family HMM TIGR02221; match to protein family HMM TIGR02549; hypothetical protein 1907329 3727077 CHY_2124 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360938.1 1905956 R 246194 CDS YP_360939.1 78043429 3728794 complement(1907402..1908382) 1 NC_007503.1 hypothetical protein 1908382 3728794 CHY_2125 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360939.1 1907402 R 246194 CDS YP_360940.1 78042684 3726973 complement(1908375..1909625) 1 NC_007503.1 hypothetical protein 1909625 3726973 CHY_2126 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360940.1 1908375 R 246194 CDS YP_360941.1 78043210 3728574 complement(1909850..1910272) 1 NC_007503.1 identified by similarity to PIR:A72209; hypothetical protein 1910272 3728574 CHY_2127 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360941.1 1909850 R 246194 CDS YP_360942.1 78044925 3728050 complement(1910329..1911258) 1 NC_007503.1 identified by similarity to GB:AAO77017.1; hypothetical protein 1911258 3728050 CHY_2128 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360942.1 1910329 R 246194 CDS YP_360943.1 78044515 3727634 complement(1911412..1911984) 1 NC_007503.1 identified by similarity to GB:AAF34247.1; hypothetical protein 1911984 3727634 CHY_2129 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360943.1 1911412 R 246194 CDS YP_360944.1 78043369 3728890 complement(1912188..1912343) 1 NC_007503.1 hypothetical protein 1912343 3728890 CHY_2130 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360944.1 1912188 R 246194 CDS YP_360945.1 78043451 3728835 complement(1912544..1912927) 1 NC_007503.1 hypothetical protein 1912927 3728835 CHY_2131 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360945.1 1912544 R 246194 CDS YP_360946.1 78042897 3727034 complement(1913308..1913982) 1 NC_007503.1 lipoprotein 1913982 3727034 CHY_2132 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_360946.1 1913308 R 246194 CDS YP_360947.1 78044630 3727751 complement(1914282..1914968) 1 NC_007503.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266; hypothetical protein 1914968 3727751 CHY_2133 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360947.1 1914282 R 246194 CDS YP_360948.1 78043452 3728836 complement(1915035..1915427) 1 NC_007503.1 hypothetical protein 1915427 3728836 CHY_2134 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360948.1 1915035 R 246194 CDS YP_360949.1 78044084 3727200 complement(1915461..1915613) 1 NC_007503.1 hypothetical protein 1915613 3727200 CHY_2135 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360949.1 1915461 R 246194 CDS YP_360950.1 78045233 3728359 complement(1915667..1915882) 1 NC_007503.1 identified by similarity to PIR:S74891; hypothetical protein 1915882 3728359 CHY_2136 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360950.1 1915667 R 246194 CDS YP_360951.1 78044428 3727546 complement(1916282..1916749) 1 NC_007503.1 identified by similarity to GB:AAK02905.1; hypothetical protein 1916749 3727546 CHY_2137 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360951.1 1916282 R 246194 CDS YP_360952.1 78044688 3727810 complement(1916980..1917090) 1 NC_007503.1 hypothetical protein 1917090 3727810 CHY_2138 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360952.1 1916980 R 246194 CDS YP_360953.1 78043250 3728633 complement(1917740..1918486) 1 NC_007503.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated Cas family protein 1918486 3728633 CHY_2139 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas family protein YP_360953.1 1917740 R 246194 CDS YP_360954.1 78043506 3726613 complement(1918547..1919647) 1 NC_007503.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899; CRISPR-associated RAMP Csm5 family protein 1919647 csm5 3726613 csm5 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated RAMP Csm5 family protein YP_360954.1 1918547 R 246194 CDS YP_360955.1 78043929 3726357 complement(1919648..1920604) 1 NC_007503.1 identified by match to protein family HMM TIGR01903; CRISPR-associated RAMP Csm4 family protein 1920604 csm4 3726357 csm4 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated RAMP Csm4 family protein YP_360955.1 1919648 R 246194 CDS YP_360956.1 78043659 3728461 complement(1920618..1921418) 1 NC_007503.1 identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582; CRISPR-associated RAMP Csm3 family protein 1921418 csm3 3728461 csm3 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated RAMP Csm3 family protein YP_360956.1 1920618 R 246194 CDS YP_360957.1 78044132 3727248 complement(1921431..1921862) 1 NC_007503.1 identified by match to protein family HMM TIGR01870; CRISPR-associated Csm2 family protein 1921862 csm2 3727248 csm2 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Csm2 family protein YP_360957.1 1921431 R 246194 CDS YP_360958.1 78045138 3728264 complement(1921865..1924081) 1 NC_007503.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR02578; CRISPR-associated Csm1 family protein 1924081 csm1 3728264 csm1 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Csm1 family protein YP_360958.1 1921865 R 246194 CDS YP_360959.1 78043089 3726367 complement(1924078..1924380) 1 NC_007503.1 identified by similarity to SP:O29107; hypothetical protein 1924380 3726367 CHY_2145 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360959.1 1924078 R 246194 CDS YP_360960.1 78044564 3727683 complement(1924521..1924649) 1 NC_007503.1 hypothetical protein 1924649 3727683 CHY_2146 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360960.1 1924521 R 246194 CDS YP_360961.1 78043228 3728592 complement(1924714..1924854) 1 NC_007503.1 hypothetical protein 1924854 3728592 CHY_2147 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360961.1 1924714 R 246194 CDS YP_360962.1 78043856 3726675 complement(1924877..1925125) 1 NC_007503.1 identified by similarity to GB:CAD25795.1; hypothetical protein 1925125 3726675 CHY_2148 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360962.1 1924877 R 246194 CDS YP_360963.1 78044824 3727949 complement(1925144..1925365) 1 NC_007503.1 identified by similarity to SP:O06061; hypothetical protein 1925365 3727949 CHY_2149 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360963.1 1925144 R 246194 CDS YP_360964.1 78044240 3727357 1925602..1926048 1 NC_007503.1 identified by similarity to SP:P45754; general secretion pathway domain-containing protein 1926048 3727357 CHY_2150 Carboxydothermus hydrogenoformans Z-2901 general secretion pathway domain-containing protein YP_360964.1 1925602 D 246194 CDS YP_360965.1 78043058 3726434 complement(1930463..1930726) 1 NC_007503.1 identified by match to protein family HMM PF02647; match to protein family HMM TIGR01573; CRISPR-associated Cas2 family protein 1930726 cas2 3726434 cas2 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas2 family protein YP_360965.1 1930463 R 246194 CDS YP_360966.1 78043644 3728446 complement(1930728..1931720) 1 NC_007503.1 identified by match to protein family HMM PF01867; match to protein family HMM TIGR00287; CRISPR-associated Cas1 family protein 1931720 cas1 3728446 cas1 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas1 family protein YP_360966.1 1930728 R 246194 CDS YP_360967.1 78043068 3726385 complement(1931731..1932231) 1 NC_007503.1 identified by match to protein family HMM PF01930; match to protein family HMM TIGR00372; CRISPR-associated Cas4 family protein 1932231 cas4 3726385 cas4 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas4 family protein YP_360967.1 1931731 R 246194 CDS YP_360968.1 78043279 3728722 complement(1932316..1934760) 1 NC_007503.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR01587; match to protein family HMM TIGR01596; CRISPR-associated helicase Cas3 1934760 cas3 3728722 cas3 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated helicase Cas3 YP_360968.1 1932316 R 246194 CDS YP_360969.1 78044070 3727186 complement(1934760..1935506) 1 NC_007503.1 identified by match to protein family HMM TIGR02592; match to protein family HMM TIGR02593; CRISPR-associated Cas5 family Hmari subtype protein 1935506 cas5h 3727186 cas5h Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas5 family Hmari subtype protein YP_360969.1 1934760 R 246194 CDS YP_360970.1 78043120 3726341 complement(1935523..1936464) 1 NC_007503.1 identified by match to protein family HMM PF05107; match to protein family HMM TIGR01595; match to protein family HMM TIGR02590; CRISPR-associated Csh2 family protein 1936464 csh2 3726341 csh2 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Csh2 family protein YP_360970.1 1935523 R 246194 CDS YP_360971.1 78043891 3726514 complement(1936465..1938405) 1 NC_007503.1 identified by match to protein family HMM TIGR02556; match to protein family HMM TIGR02591; CRISPR-associated Csh1 family protein 1938405 csh1 3726514 csh1 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Csh1 family protein YP_360971.1 1936465 R 246194 CDS YP_360972.1 78044781 3727905 complement(1938477..1939223) 1 NC_007503.1 identified by match to protein family HMM PF01881; match to protein family HMM TIGR01877; CRISPR-associated Cas family protein 1939223 3727905 CHY_2158 Carboxydothermus hydrogenoformans Z-2901 CRISPR-associated Cas family protein YP_360972.1 1938477 R 246194 CDS YP_360973.1 78044206 3727323 complement(1939244..1939378) 1 NC_007503.1 hypothetical protein 1939378 3727323 CHY_2159 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360973.1 1939244 R 246194 CDS YP_360974.1 78043812 3726630 1939512..1939832 1 NC_007503.1 identified by similarity to GP:29896550; hypothetical protein 1939832 3726630 CHY_2160 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360974.1 1939512 D 246194 CDS YP_360975.1 78045167 3728293 complement(1939822..1939992) 1 NC_007503.1 hypothetical protein 1939992 3728293 CHY_2161 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360975.1 1939822 R 246194 CDS YP_360976.1 78044594 3727715 complement(1940096..1940242) 1 NC_007503.1 hypothetical protein 1940242 3727715 CHY_2162 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360976.1 1940096 R 246194 CDS YP_360977.1 78043282 3728725 complement(1940258..1940359) 1 NC_007503.1 hypothetical protein 1940359 3728725 CHY_2163 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360977.1 1940258 R 246194 CDS YP_360978.1 78042824 3726841 complement(1940458..1941693) 1 NC_007503.1 identified by match to protein family HMM PF00004; ATPase AAA 1941693 3726841 CHY_2164 Carboxydothermus hydrogenoformans Z-2901 ATPase AAA YP_360978.1 1940458 R 246194 CDS YP_360979.1 78043598 3728751 complement(1941751..1942308) 1 NC_007503.1 identified by similarity to SP:P43269; match to protein family HMM PF00565; thermonuclease 1942308 3728751 CHY_2165 Carboxydothermus hydrogenoformans Z-2901 thermonuclease YP_360979.1 1941751 R 246194 CDS YP_360980.1 78043031 3726446 complement(1942431..1942541) 1 NC_007503.1 hypothetical protein 1942541 3726446 CHY_2166 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360980.1 1942431 R 246194 CDS YP_360981.1 78043769 3726802 complement(1942572..1943444) 1 NC_007503.1 identified by match to protein family HMM PF01610; transposase, truncation 1943444 3726802 CHY_2167 Carboxydothermus hydrogenoformans Z-2901 transposase, truncation YP_360981.1 1942572 R 246194 CDS YP_360982.1 78043186 3728705 complement(1943721..1943873) 1 NC_007503.1 hypothetical protein 1943873 3728705 CHY_2168 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360982.1 1943721 R 246194 CDS YP_360983.1 78044981 3728106 complement(1949953..1951023) 1 NC_007503.1 identified by similarity to PIR:S76234; hypothetical protein 1951023 3728106 CHY_2169 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360983.1 1949953 R 246194 CDS YP_360984.1 78044364 3727482 complement(1951129..1953003) 1 NC_007503.1 identified by similarity to OMNI:NTL02ST1907; match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 1953003 3727482 CHY_2170 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360984.1 1951129 R 246194 CDS YP_360985.1 78043359 3728880 1952996..1953100 1 NC_007503.1 hypothetical protein 1953100 3728880 CHY_2171 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360985.1 1952996 D 246194 CDS YP_360986.1 78044134 3727250 1953190..1953315 1 NC_007503.1 hypothetical protein 1953315 3727250 CHY_2172 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360986.1 1953190 D 246194 CDS YP_360987.1 78042820 3726837 complement(1953752..1954237) 1 NC_007503.1 hypothetical protein 1954237 3726837 CHY_2173 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360987.1 1953752 R 246194 CDS YP_360988.1 78044582 3727702 complement(1954277..1954705) 1 NC_007503.1 hypothetical protein 1954705 3727702 CHY_2174 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360988.1 1954277 R 246194 CDS YP_360989.1 78044010 3726245 1955104..1955289 1 NC_007503.1 hypothetical protein 1955289 3726245 CHY_2175 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360989.1 1955104 D 246194 CDS YP_360990.1 78043082 3726399 1955292..1955549 1 NC_007503.1 identified by similarity to GP:29894794; hypothetical protein 1955549 3726399 CHY_2176 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360990.1 1955292 D 246194 CDS YP_360991.1 78043731 3728476 1955701..1955889 1 NC_007503.1 hypothetical protein 1955889 3728476 CHY_2177 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360991.1 1955701 D 246194 CDS YP_360992.1 78045148 3728274 complement(1955754..1955897) 1 NC_007503.1 hypothetical protein 1955897 3728274 CHY_2178 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360992.1 1955754 R 246194 CDS YP_360993.1 78044358 3727476 complement(1956097..1956876) 1 NC_007503.1 identified by similarity to GB:AAO36301.1; hypothetical protein 1956876 3727476 CHY_2179 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360993.1 1956097 R 246194 CDS YP_360994.1 78044918 3728043 complement(1956955..1957647) 1 NC_007503.1 identified by similarity to GB:AAK02119.1; hypothetical protein 1957647 3728043 CHY_2180 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360994.1 1956955 R 246194 CDS YP_360995.1 78043141 3728504 1957736..1958176 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 1958176 3728504 CHY_2181 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_360995.1 1957736 D 246194 CDS YP_360996.1 78044522 3727641 complement(1958623..1958946) 1 NC_007503.1 hypothetical protein 1958946 3727641 CHY_2183 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_360996.1 1958623 R 246194 CDS YP_360997.1 78042664 3728489 complement(1959104..1961302) 1 NC_007503.1 identified by match to protein family HMM PF02687; ABC transporter permease 1961302 3728489 CHY_2184 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_360997.1 1959104 R 246194 CDS YP_360998.1 78043352 3728541 complement(1961302..1962000) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1962000 3728541 CHY_2185 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_360998.1 1961302 R 246194 CDS YP_360999.1 78043588 3728741 complement(1962047..1965550) 1 NC_007503.1 identified by similarity to SP:P23478; match to protein family HMM PF00580; exonuclease RexA 1965550 rexA 3728741 rexA Carboxydothermus hydrogenoformans Z-2901 exonuclease RexA YP_360999.1 1962047 R 246194 CDS YP_361000.1 78043948 3726415 complement(1965501..1968773) 1 NC_007503.1 identified by similarity to SP:P23477; exonuclease RexB 1968773 rexB 3726415 rexB Carboxydothermus hydrogenoformans Z-2901 exonuclease RexB YP_361000.1 1965501 R 246194 CDS YP_361001.1 78043039 3726454 complement(1968952..1969455) 1 NC_007503.1 identified by similarity to GB:AAM01982.1; match to protein family HMM PF00149; match to protein family HMM TIGR00040; phosphoesterase 1969455 3726454 CHY_2188 Carboxydothermus hydrogenoformans Z-2901 phosphoesterase YP_361001.1 1968952 R 246194 CDS YP_361002.1 78043398 3728860 complement(1969536..1971179) 1 NC_007503.1 hypothetical protein 1971179 3728860 CHY_2189 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361002.1 1969536 R 246194 CDS YP_361003.1 78044210 3727327 complement(1971176..1971910) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1971910 3727327 CHY_2190 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_361003.1 1971176 R 246194 CDS YP_361004.1 78044016 3727131 complement(1972107..1972859) 1 NC_007503.1 identified by similarity to GB:AAD29087.1; match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 1972859 3727131 CHY_2191 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter ATP-binding protein YP_361004.1 1972107 R 246194 CDS YP_361005.1 78044739 3727862 complement(1972880..1973923) 1 NC_007503.1 identified by match to protein family HMM PF01032; iron ABC transporter permease 1973923 3727862 CHY_2192 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter permease YP_361005.1 1972880 R 246194 CDS YP_361006.1 78043786 3726643 complement(1973936..1975042) 1 NC_007503.1 identified by match to protein family HMM PF01497; iron ABC transporter substrate-binding protein 1975042 3726643 CHY_2193 Carboxydothermus hydrogenoformans Z-2901 iron ABC transporter substrate-binding protein YP_361006.1 1973936 R 246194 CDS YP_361007.1 78043814 3726632 complement(1975057..1975662) 1 NC_007503.1 identified by match to protein family HMM PF02663; tungsten formylmethanofuran dehydrogenase subunit E 1975662 3726632 CHY_2194 Carboxydothermus hydrogenoformans Z-2901 tungsten formylmethanofuran dehydrogenase subunit E YP_361007.1 1975057 R 246194 CDS YP_361008.1 78043243 3728626 complement(1975873..1977462) 1 NC_007503.1 identified by match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01966; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box protein 1977462 3728626 CHY_2195 Carboxydothermus hydrogenoformans Z-2901 sensory box protein YP_361008.1 1975873 R 246194 CDS YP_361009.1 78044223 3727340 complement(1977627..1978433) 1 NC_007503.1 identified by similarity to GB:AAM24010.1; hypothetical protein 1978433 3727340 CHY_2196 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361009.1 1977627 R 246194 CDS YP_361010.1 78043170 3728689 complement(1978526..1979623) 1 NC_007503.1 identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 1979623 trmU 3728689 trmU Carboxydothermus hydrogenoformans Z-2901 tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase YP_361010.1 1978526 R 246194 CDS YP_361011.1 78043420 3728785 complement(1979662..1980039) 1 NC_007503.1 identified by match to protein family HMM PF01592; FeS assembly protein 1980039 3728785 CHY_2198 Carboxydothermus hydrogenoformans Z-2901 FeS assembly protein YP_361011.1 1979662 R 246194 CDS YP_361012.1 78044327 3727444 complement(1980042..1981223) 1 NC_007503.1 identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212; cysteine desulfurase 1981223 iscS 3727444 iscS Carboxydothermus hydrogenoformans Z-2901 cysteine desulfurase YP_361012.1 1980042 R 246194 CDS YP_361013.1 78045031 3728156 complement(1981246..1981692) 1 NC_007503.1 identified by similarity to GB:AAM24467.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 1981692 3728156 CHY_2200 Carboxydothermus hydrogenoformans Z-2901 rrf2 family protein YP_361013.1 1981246 R 246194 CDS YP_361014.1 78042989 3726481 complement(1981775..1983109) 1 NC_007503.1 identified by similarity to GB:AAM24978.1; match to protein family HMM PF00004; recombination factor protein RarA 1983109 3726481 CHY_2201 Carboxydothermus hydrogenoformans Z-2901 recombination factor protein RarA YP_361014.1 1981775 R 246194 CDS YP_361015.1 78043796 3726653 complement(1983178..1983498) 1 NC_007503.1 identified by similarity to SP:P00274; match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 1983498 trx2 3726653 trx2 Carboxydothermus hydrogenoformans Z-2901 thioredoxin YP_361015.1 1983178 R 246194 CDS YP_361016.1 78043179 3728698 complement(1983599..1984327) 1 NC_007503.1 identified by similarity to SP:Q46927; match to protein family HMM PF00899; thiazole biosynthesis adenylyltransferase ThiF 1984327 3728698 CHY_2203 Carboxydothermus hydrogenoformans Z-2901 thiazole biosynthesis adenylyltransferase ThiF YP_361016.1 1983599 R 246194 CDS YP_361017.1 78043789 3726646 complement(1984597..1986375) 1 NC_007503.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1986375 aspS 3726646 aspS Carboxydothermus hydrogenoformans Z-2901 aspartyl-tRNA synthetase YP_361017.1 1984597 R 246194 CDS YP_361018.1 78044066 3727182 complement(1986368..1987639) 1 NC_007503.1 identified by similarity to SP:O32422; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase 1987639 hisS 3727182 hisS Carboxydothermus hydrogenoformans Z-2901 histidyl-tRNA synthetase YP_361018.1 1986368 R 246194 CDS YP_361019.1 78044473 3727592 complement(1987778..1987897) 1 NC_007503.1 hypothetical protein 1987897 3727592 CHY_2206 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361019.1 1987778 R 246194 CDS YP_361020.1 78043351 3728540 complement(1988025..1989620) 1 NC_007503.1 group 1 glycosyl transferase 1989620 3728540 CHY_2207 Carboxydothermus hydrogenoformans Z-2901 group 1 glycosyl transferase YP_361020.1 1988025 R 246194 CDS YP_361021.1 78044566 3727685 complement(1989647..1990378) 1 NC_007503.1 identified by similarity to SP:Q06916; match to protein family HMM PF02535; ZIP zinc transporter family protein 1990378 3727685 CHY_2208 Carboxydothermus hydrogenoformans Z-2901 ZIP zinc transporter family protein YP_361021.1 1989647 R 246194 CDS YP_361022.1 78044984 3728109 complement(1990596..1991975) 1 NC_007503.1 identified by similarity to GB:AAM24970.1; match to protein family HMM PF04055; radical SAM domain-containing protein 1991975 3728109 CHY_2209 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_361022.1 1990596 R 246194 CDS YP_361023.1 78042675 3728501 complement(1992035..1992691) 1 NC_007503.1 identified by similarity to GB:AAM24969.1; hypothetical protein 1992691 3728501 CHY_2210 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361023.1 1992035 R 246194 CDS YP_361024.1 78043343 3728532 complement(1992804..1993751) 1 NC_007503.1 identified by similarity to GP:15281347; match to protein family HMM PF04556; type II restriction endonuclease 1993751 3728532 CHY_2211 Carboxydothermus hydrogenoformans Z-2901 type II restriction endonuclease YP_361024.1 1992804 R 246194 CDS YP_361025.1 78044466 3727585 complement(1993765..1994754) 1 NC_007503.1 identified by match to protein family HMM PF01170; match to protein family HMM PF01555; DNA methylase 1994754 3727585 CHY_2212 Carboxydothermus hydrogenoformans Z-2901 DNA methylase YP_361025.1 1993765 R 246194 CDS YP_361026.1 78045191 3728317 complement(1994798..1995727) 1 NC_007503.1 identified by similarity to SP:P34720; match to protein family HMM PF02086; match to protein family HMM TIGR00571; DNA adenine methylase 1995727 3728317 CHY_2213 Carboxydothermus hydrogenoformans Z-2901 DNA adenine methylase YP_361026.1 1994798 R 246194 CDS YP_361027.1 78045207 3728333 complement(1995812..1997764) 1 NC_007503.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; molybdopterin oxidoreductase 1997764 3728333 CHY_2214 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase YP_361027.1 1995812 R 246194 CDS YP_361028.1 78043372 3728893 complement(1997799..1998740) 1 NC_007503.1 identified by match to protein family HMM PF03547; transporter 1998740 3728893 CHY_2215 Carboxydothermus hydrogenoformans Z-2901 transporter YP_361028.1 1997799 R 246194 CDS YP_361029.1 78043993 3726228 1998862..2000259 1 NC_007503.1 identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887; M20/M25/M40 family peptidase 2000259 3726228 CHY_2216 Carboxydothermus hydrogenoformans Z-2901 M20/M25/M40 family peptidase YP_361029.1 1998862 D 246194 CDS YP_361030.1 78045090 3728216 complement(2000301..2002088) 1 NC_007503.1 identified by similarity to SP:P94532; match to protein family HMM PF02554; carbon starvation protein A 2002088 cstA 3728216 cstA Carboxydothermus hydrogenoformans Z-2901 carbon starvation protein A YP_361030.1 2000301 R 246194 CDS YP_361031.1 78044528 3727647 complement(2002221..2002976) 1 NC_007503.1 identified by similarity to SP:P77742; match to protein family HMM PF00072; match to protein family HMM PF04397; DNA-binding response regulator 2002976 3727647 CHY_2218 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_361031.1 2002221 R 246194 CDS YP_361032.1 78043623 3728834 complement(2002973..2004631) 1 NC_007503.1 identified by similarity to SP:P33357; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694; sensor histidine kinase 2004631 3728834 CHY_2219 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_361032.1 2002973 R 246194 CDS YP_361033.1 78043683 3726246 complement(2004704..2004829) 1 NC_007503.1 identified by similarity to SP:P00270; rubredoxin 2004829 3726246 CHY_2220 Carboxydothermus hydrogenoformans Z-2901 rubredoxin YP_361033.1 2004704 R 246194 CDS YP_361034.1 78045201 3728327 complement(2004894..2005517) 1 NC_007503.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2005517 3728327 CHY_2221 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_361034.1 2004894 R 246194 CDS YP_361035.1 78043009 3726462 complement(2005536..2005973) 1 NC_007503.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2005973 dtd 3726462 dtd Carboxydothermus hydrogenoformans Z-2901 D-tyrosyl-tRNA(Tyr) deacylase YP_361035.1 2005536 R 246194 CDS YP_361036.1 78044718 3727840 complement(2005983..2008133) 1 NC_007503.1 identified by similarity to SP:O54408; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; GTP pyrophosphokinase 2008133 relA 3727840 relA Carboxydothermus hydrogenoformans Z-2901 GTP pyrophosphokinase YP_361036.1 2005983 R 246194 CDS YP_361037.1 78043570 3726289 complement(2008171..2010735) 1 NC_007503.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded DNA-specific exonuclease RecJ 2010735 recJ 3726289 recJ Carboxydothermus hydrogenoformans Z-2901 single-stranded DNA-specific exonuclease RecJ YP_361037.1 2008171 R 246194 CDS YP_361038.1 78042738 3726910 2010858..2011544 1 NC_007503.1 identified by match to protein family HMM PF04474; hypothetical protein 2011544 3726910 CHY_2225 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361038.1 2010858 D 246194 CDS YP_361039.1 78044363 3727481 2011563..2012489 1 NC_007503.1 identified by match to protein family HMM PF00892; hypothetical protein 2012489 3727481 CHY_2226 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361039.1 2011563 D 246194 CDS YP_361040.1 78043953 3726733 complement(2012461..2013297) 1 NC_007503.1 identified by match to protein family HMM PF02811; phosphotransferase domain-containing protein 2013297 3726733 CHY_2227 Carboxydothermus hydrogenoformans Z-2901 phosphotransferase domain-containing protein YP_361040.1 2012461 R 246194 CDS YP_361041.1 78044858 3727983 complement(2013444..2014163) 1 NC_007503.1 identified by similarity to SP:P22731; match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 2014163 livF 3727983 livF Carboxydothermus hydrogenoformans Z-2901 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_361041.1 2013444 R 246194 CDS YP_361042.1 78042991 3726483 complement(2014166..2014933) 1 NC_007503.1 identified by similarity to SP:P22730; match to protein family HMM PF00005; high affinity branched-chain amino acid ABC transporter ATP-binding protein 2014933 livG 3726483 livG Carboxydothermus hydrogenoformans Z-2901 high affinity branched-chain amino acid ABC transporter ATP-binding protein YP_361042.1 2014166 R 246194 CDS YP_361043.1 78043757 3726283 complement(2014908..2015876) 1 NC_007503.1 identified by match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease 2015876 livM 3726283 livM Carboxydothermus hydrogenoformans Z-2901 high affinity branched-chain amino acid ABC transporter permease YP_361043.1 2014908 R 246194 CDS YP_361044.1 78044461 3727580 complement(2015886..2016770) 1 NC_007503.1 identified by similarity to SP:P08340; match to protein family HMM PF02653; high affinity branched-chain amino acid ABC transporter permease 2016770 livH 3727580 livH Carboxydothermus hydrogenoformans Z-2901 high affinity branched-chain amino acid ABC transporter permease YP_361044.1 2015886 R 246194 CDS YP_361045.1 78044155 3727271 2021529..2021621 1 NC_007503.1 hypothetical protein 2021621 3727271 CHY_2235 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361045.1 2021529 D 246194 CDS YP_361046.1 78044114 3727230 complement(2023665..2024078) 1 NC_007503.1 identified by similarity to GB:CAE08028.1; hypothetical protein 2024078 3727230 CHY_2237 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361046.1 2023665 R 246194 CDS YP_361047.1 78043507 3726614 complement(2024141..2025325) 1 NC_007503.1 identified by similarity to SP:P02917; match to protein family HMM PF01094; high affinity branched-chain amino acid amino acid ABC transporter substrate-binding protein 2025325 3726614 CHY_2238 Carboxydothermus hydrogenoformans Z-2901 high affinity branched-chain amino acid amino acid ABC transporter substrate-binding protein YP_361047.1 2024141 R 246194 CDS YP_361048.1 78043327 3728652 complement(2025508..2026698) 1 NC_007503.1 identified by match to protein family HMM PF02687; ABC transporter permease 2026698 3728652 CHY_2239 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_361048.1 2025508 R 246194 CDS YP_361049.1 78042744 3726916 complement(2026688..2027386) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2027386 3726916 CHY_2240 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_361049.1 2026688 R 246194 CDS YP_361050.1 78045114 3728240 complement(2027383..2028420) 1 NC_007503.1 identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2028420 3728240 CHY_2241 Carboxydothermus hydrogenoformans Z-2901 RND family efflux transporter MFP subunit YP_361050.1 2027383 R 246194 CDS YP_361051.1 78044549 3727668 complement(2028572..2029921) 1 NC_007503.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766; ISChy5, transposase 2029921 3727668 CHY_2242 Carboxydothermus hydrogenoformans Z-2901 ISChy5, transposase YP_361051.1 2028572 R 246194 CDS YP_361052.1 78044805 3727930 complement(2029927..2030046) 1 NC_007503.1 hypothetical protein 2030046 3727930 CHY_2243 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361052.1 2029927 R 246194 CDS YP_361053.1 78044236 3727353 complement(2030015..2030680) 1 NC_007503.1 hypothetical protein 2030680 3727353 CHY_2244 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361053.1 2030015 R 246194 CDS YP_361054.1 78042868 3727083 complement(2030887..2030994) 1 NC_007503.1 hypothetical protein 2030994 3727083 CHY_2245 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361054.1 2030887 R 246194 CDS YP_361055.1 78043448 3728911 complement(2031052..2031717) 1 NC_007503.1 hypothetical protein 2031717 3728911 CHY_2246 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361055.1 2031052 R 246194 CDS YP_361056.1 78042823 3726840 complement(2031783..2032046) 1 NC_007503.1 hypothetical protein 2032046 3726840 CHY_2247 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361056.1 2031783 R 246194 CDS YP_361057.1 78043503 3726610 complement(2032274..2032732) 1 NC_007503.1 hypothetical protein 2032732 3726610 CHY_2248 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361057.1 2032274 R 246194 CDS YP_361058.1 78043799 3726617 complement(2032704..2032886) 1 NC_007503.1 hypothetical protein 2032886 3726617 CHY_2249 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361058.1 2032704 R 246194 CDS YP_361059.1 78044771 3727895 complement(2032934..2033602) 1 NC_007503.1 identified by match to protein family HMM PF07853; hypothetical protein 2033602 3727895 CHY_2250 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361059.1 2032934 R 246194 CDS YP_361060.1 78042892 3727029 complement(2033669..2034142) 1 NC_007503.1 identified by similarity to PIR:G72417; match to protein family HMM PF02915; hypothetical protein 2034142 3727029 CHY_2251 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361060.1 2033669 R 246194 CDS YP_361061.1 78044341 3727458 complement(2034145..2034612) 1 NC_007503.1 hypothetical protein 2034612 3727458 CHY_2252 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361061.1 2034145 R 246194 CDS YP_361062.1 78042766 3726899 complement(2034646..2035554) 1 NC_007503.1 identified by match to protein family HMM PF03956; hypothetical protein 2035554 3726899 CHY_2253 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361062.1 2034646 R 246194 CDS YP_361063.1 78043925 3726353 complement(2035587..2036378) 1 NC_007503.1 identified by similarity to GB:AAC24330.1; match to protein family HMM PF00378; enoyl-CoA hydratase 2036378 3726353 CHY_2254 Carboxydothermus hydrogenoformans Z-2901 enoyl-CoA hydratase YP_361063.1 2035587 R 246194 CDS YP_361064.1 78044440 3727558 complement(2036383..2036496) 1 NC_007503.1 hypothetical protein 2036496 3727558 CHY_2255 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361064.1 2036383 R 246194 CDS YP_361065.1 78043855 3726674 2036497..2036601 1 NC_007503.1 hypothetical protein 2036601 3726674 CHY_2256 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361065.1 2036497 D 246194 CDS YP_361066.1 78042634 3727120 complement(2036830..2037231) 1 NC_007503.1 hypothetical protein 2037231 3727120 CHY_2257 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361066.1 2036830 R 246194 CDS YP_361067.1 78044691 3727813 2037554..2038345 1 NC_007503.1 hypothetical protein 2038345 3727813 CHY_2258 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361067.1 2037554 D 246194 CDS YP_361068.1 78043504 3726611 complement(2038399..2039769) 1 NC_007503.1 identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838; argininosuccinate lyase 2039769 argH 3726611 argH Carboxydothermus hydrogenoformans Z-2901 argininosuccinate lyase YP_361068.1 2038399 R 246194 CDS YP_361069.1 78044946 3728071 complement(2039785..2040990) 1 NC_007503.1 catalyzes ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate; argininosuccinate synthase 2040990 argG 3728071 argG Carboxydothermus hydrogenoformans Z-2901 argininosuccinate synthase YP_361069.1 2039785 R 246194 CDS YP_361070.1 78044926 3728051 complement(2041034..2041969) 1 NC_007503.1 identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase 2041969 argF 3728051 argF Carboxydothermus hydrogenoformans Z-2901 ornithine carbamoyltransferase YP_361070.1 2041034 R 246194 CDS YP_361071.1 78042733 3726944 complement(2041998..2043194) 1 NC_007503.1 identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase 2043194 argD 3726944 argD Carboxydothermus hydrogenoformans Z-2901 acetylornithine aminotransferase YP_361071.1 2041998 R 246194 CDS YP_361072.1 78043383 3728768 complement(2043210..2044094) 1 NC_007503.1 identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 2044094 argB 3728768 argB Carboxydothermus hydrogenoformans Z-2901 acetylglutamate kinase YP_361072.1 2043210 R 246194 CDS YP_361073.1 78044520 3727639 complement(2044109..2045308) 1 NC_007503.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 2045308 argJ 3727639 argJ Carboxydothermus hydrogenoformans Z-2901 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_361073.1 2044109 R 246194 CDS YP_361074.1 78042627 3727113 complement(2045321..2046334) 1 NC_007503.1 identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850; N-acetyl-gamma-glutamyl-phosphate reductase 2046334 argC 3727113 argC Carboxydothermus hydrogenoformans Z-2901 N-acetyl-gamma-glutamyl-phosphate reductase YP_361074.1 2045321 R 246194 CDS YP_361075.1 78043085 3726363 complement(2046447..2047679) 1 NC_007503.1 identified by match to protein family HMM PF07690; major facilitator superfamily protein 2047679 3726363 CHY_2266 Carboxydothermus hydrogenoformans Z-2901 major facilitator superfamily protein YP_361075.1 2046447 R 246194 CDS YP_361076.1 78044893 3728018 complement(2047763..2048755) 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2048755 3728018 CHY_2267 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_361076.1 2047763 R 246194 CDS YP_361077.1 78043004 3726496 complement(2048765..2050165) 1 NC_007503.1 identified by similarity to SP:Q05353; match to protein family HMM PF01871; match to protein family HMM PF02900; match to protein family HMM TIGR00296; hypothetical protein 2050165 3726496 CHY_2268 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361077.1 2048765 R 246194 CDS YP_361078.1 78044708 3727830 complement(2050168..2050293) 1 NC_007503.1 hypothetical protein 2050293 3727830 CHY_2269 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361078.1 2050168 R 246194 CDS YP_361079.1 78045182 3728308 complement(2050397..2052319) 1 NC_007503.1 identified by match to protein family HMM PF03169; match to protein family HMM TIGR00728; match to protein family HMM TIGR00733; OPT family oligopeptide transporter 2052319 3728308 CHY_2270 Carboxydothermus hydrogenoformans Z-2901 OPT family oligopeptide transporter YP_361079.1 2050397 R 246194 CDS YP_361080.1 78044767 3727891 complement(2052527..2053246) 1 NC_007503.1 identified by similarity to SP:P50864; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2053246 3727891 CHY_2271 Carboxydothermus hydrogenoformans Z-2901 N-acetylmuramoyl-L-alanine amidase YP_361080.1 2052527 R 246194 CDS YP_361081.1 78042691 3726980 2053418..2053936 1 NC_007503.1 identified by similarity to SP:Q45538; match to protein family HMM PF02915; CotJC protein 2053936 cotJC2 3726980 cotJC2 Carboxydothermus hydrogenoformans Z-2901 CotJC protein YP_361081.1 2053418 D 246194 CDS YP_361082.1 78045116 3728242 complement(2054096..2054488) 1 NC_007503.1 identified by similarity to SP:P02363; match to protein family HMM PF00380; 30S ribosomal protein S9 2054488 rpsI 3728242 rpsI Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S9 YP_361082.1 2054096 R 246194 CDS YP_361083.1 78043632 3726760 complement(2054514..2054945) 1 NC_007503.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2054945 rplM 3726760 rplM Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L13 YP_361083.1 2054514 R 246194 CDS YP_361084.1 78044207 3727324 complement(2055049..2056053) 1 NC_007503.1 identified by match to protein family HMM PF01699; sodium/calcium antiporter 2056053 3727324 CHY_2275 Carboxydothermus hydrogenoformans Z-2901 sodium/calcium antiporter YP_361084.1 2055049 R 246194 CDS YP_361085.1 78045100 3728226 complement(2056068..2056808) 1 NC_007503.1 identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 2056808 truA 3728226 truA Carboxydothermus hydrogenoformans Z-2901 tRNA pseudouridine synthase A YP_361085.1 2056068 R 246194 CDS YP_361086.1 78043489 3726596 complement(2056786..2057604) 1 NC_007503.1 identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454; cobalt ABC transporter permease 2057604 3726596 CHY_2277 Carboxydothermus hydrogenoformans Z-2901 cobalt ABC transporter permease YP_361086.1 2056786 R 246194 CDS YP_361087.1 78042689 3726978 complement(2057597..2058436) 1 NC_007503.1 identified by similarity to GB:AAP07241.1; match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 2058436 3726978 CHY_2278 Carboxydothermus hydrogenoformans Z-2901 cobalt ABC transporter ATP-binding protein YP_361087.1 2057597 R 246194 CDS YP_361088.1 78044595 3727716 complement(2058421..2059254) 1 NC_007503.1 identified by match to protein family HMM PF00005; cobalt ABC transporter ATP-binding protein 2059254 3727716 CHY_2279 Carboxydothermus hydrogenoformans Z-2901 cobalt ABC transporter ATP-binding protein YP_361088.1 2058421 R 246194 CDS YP_361089.1 78044459 3727578 complement(2059257..2059595) 1 NC_007503.1 identified by similarity to SP:P07843; match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 2059595 rplQ 3727578 rplQ Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L17 YP_361089.1 2059257 R 246194 CDS YP_361090.1 78044042 3727157 complement(2059609..2060550) 1 NC_007503.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2060550 rpoA 3727157 rpoA Carboxydothermus hydrogenoformans Z-2901 DNA-directed RNA polymerase subunit alpha YP_361090.1 2059609 R 246194 CDS YP_361091.1 78043798 3726616 complement(2060589..2061215) 1 NC_007503.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2061215 rpsD 3726616 rpsD Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S4 YP_361091.1 2060589 R 246194 CDS YP_361092.1 78045178 3728304 complement(2061231..2061620) 1 NC_007503.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2061620 rpsK 3728304 rpsK Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S11 YP_361092.1 2061231 R 246194 CDS YP_361093.1 78043008 3726461 complement(2061636..2062007) 1 NC_007503.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2062007 rpsM 3726461 rpsM Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S13 YP_361093.1 2061636 R 246194 CDS YP_361094.1 78043421 3728786 complement(2062027..2062140) 1 NC_007503.1 identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; 50S ribosomal protein L36 2062140 rpmJ 3728786 rpmJ Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L36 YP_361094.1 2062027 R 246194 CDS YP_361095.1 78043777 3726810 complement(2062162..2062380) 1 NC_007503.1 identified by similarity to SP:P20458; match to protein family HMM PF00575; match to protein family HMM TIGR00008; translation initiation factor IF-1 2062380 infA 3726810 infA Carboxydothermus hydrogenoformans Z-2901 translation initiation factor IF-1 YP_361095.1 2062162 R 246194 CDS YP_361096.1 78044546 3727665 complement(2062397..2062669) 1 NC_007503.1 hypothetical protein 2062669 3727665 CHY_2287 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361096.1 2062397 R 246194 CDS YP_361097.1 78042918 3727017 complement(2062692..2063447) 1 NC_007503.1 identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase 2063447 map 3727017 map Carboxydothermus hydrogenoformans Z-2901 methionine aminopeptidase YP_361097.1 2062692 R 246194 CDS YP_361098.1 78044314 3727431 complement(2063451..2064710) 1 NC_007503.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2064710 secY 3727431 secY Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecY YP_361098.1 2063451 R 246194 CDS YP_361099.1 78043176 3728695 complement(2064711..2065151) 1 NC_007503.1 late assembly protein; 50S ribosomal protein L15 2065151 rplO 3728695 rplO Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L15 YP_361099.1 2064711 R 246194 CDS YP_361100.1 78044597 3727718 complement(2065163..2065345) 1 NC_007503.1 identified by similarity to SP:Q9Z9J6; match to protein family HMM PF00327; match to protein family HMM TIGR01308; 50S ribosomal protein L30 2065345 rpmD 3727718 rpmD Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L30 YP_361100.1 2065163 R 246194 CDS YP_361101.1 78044312 3727429 complement(2065358..2065861) 1 NC_007503.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2065861 rpsE 3727429 rpsE Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S5 YP_361101.1 2065358 R 246194 CDS YP_361102.1 78044632 3727753 complement(2065880..2066248) 1 NC_007503.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2066248 rplR 3727753 rplR Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L18 YP_361102.1 2065880 R 246194 CDS YP_361103.1 78042739 3726911 complement(2066276..2066824) 1 NC_007503.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2066824 rplF 3726911 rplF Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L6 YP_361103.1 2066276 R 246194 CDS YP_361104.1 78043409 3728871 complement(2066846..2067244) 1 NC_007503.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2067244 rpsH 3728871 rpsH Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S8 YP_361104.1 2066846 R 246194 CDS YP_361105.1 78043583 3726302 complement(2067263..2067448) 1 NC_007503.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 2067448 rpsN 3726302 rpsN Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S14 YP_361105.1 2067263 R 246194 CDS YP_361106.1 78043652 3728454 complement(2067465..2068004) 1 NC_007503.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2068004 rplE 3728454 rplE Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L5 YP_361106.1 2067465 R 246194 CDS YP_361107.1 78043712 3726665 complement(2068029..2068352) 1 NC_007503.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2068352 rplX 3726665 rplX Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L24 YP_361107.1 2068029 R 246194 CDS YP_361108.1 78042850 3727104 complement(2068365..2068733) 1 NC_007503.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2068733 rplN 3727104 rplN Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L14 YP_361108.1 2068365 R 246194 CDS YP_361109.1 78045119 3728245 complement(2068765..2069061) 1 NC_007503.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2069061 rpsQ 3728245 rpsQ Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S17 YP_361109.1 2068765 R 246194 CDS YP_361110.1 78043487 3728814 complement(2069078..2069287) 1 NC_007503.1 identified by similarity to SP:P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; 50S ribosomal protein L29 2069287 rpmC 3728814 rpmC Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L29 YP_361110.1 2069078 R 246194 CDS YP_361111.1 78043657 3728459 complement(2069277..2069708) 1 NC_007503.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2069708 rplP 3728459 rplP Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L16 YP_361111.1 2069277 R 246194 CDS YP_361112.1 78044912 3728037 complement(2069711..2070379) 1 NC_007503.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2070379 rpsC 3728037 rpsC Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S3 YP_361112.1 2069711 R 246194 CDS YP_361113.1 78044381 3727499 complement(2070381..2070722) 1 NC_007503.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2070722 rplV 3727499 rplV Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L22 YP_361113.1 2070381 R 246194 CDS YP_361114.1 78044005 3726240 complement(2070743..2071027) 1 NC_007503.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2071027 rpsS 3726240 rpsS Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S19 YP_361114.1 2070743 R 246194 CDS YP_361115.1 78042708 3726958 complement(2071049..2071873) 1 NC_007503.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2071873 rplB 3726958 rplB Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L2 YP_361115.1 2071049 R 246194 CDS YP_361116.1 78042721 3726932 complement(2071902..2072189) 1 NC_007503.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2072189 rplW 3726932 rplW Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L23 YP_361116.1 2071902 R 246194 CDS YP_361117.1 78043328 3728653 complement(2072190..2072810) 1 NC_007503.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2072810 rplD 3728653 rplD Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L4 YP_361117.1 2072190 R 246194 CDS YP_361118.1 78044555 3727674 complement(2072839..2073468) 1 NC_007503.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2073468 rplC 3727674 rplC Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L3 YP_361118.1 2072839 R 246194 CDS YP_361119.1 78044733 3727856 complement(2073481..2073789) 1 NC_007503.1 identified by similarity to SP:P21471; match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 2073789 rpsJ 3727856 rpsJ Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S10 YP_361119.1 2073481 R 246194 CDS YP_361120.1 78044297 3727414 complement(2073805..2073906) 1 NC_007503.1 hypothetical protein 2073906 3727414 CHY_2311 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361120.1 2073805 R 246194 CDS YP_361121.1 78045164 3728290 complement(2073884..2075086) 1 NC_007503.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2075086 tuf1 3728290 tuf1 Carboxydothermus hydrogenoformans Z-2901 elongation factor Tu YP_361121.1 2073884 R 246194 CDS YP_361122.1 78043084 3726362 complement(2075102..2077180) 1 NC_007503.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2077180 fusA2 3726362 fusA2 Carboxydothermus hydrogenoformans Z-2901 elongation factor G YP_361122.1 2075102 R 246194 CDS YP_361123.1 78043518 3726567 complement(2077196..2077666) 1 NC_007503.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2077666 rpsG 3726567 rpsG Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S7 YP_361123.1 2077196 R 246194 CDS YP_361124.1 78044960 3728085 complement(2077705..2078085) 1 NC_007503.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2078085 rpsL 3728085 rpsL Carboxydothermus hydrogenoformans Z-2901 30S ribosomal protein S12 YP_361124.1 2077705 R 246194 CDS YP_361125.1 78043898 3726521 complement(2078089..2078352) 1 NC_007503.1 identified by match to protein family HMM PF01248; 50S ribosomal protein L7 2078352 3726521 CHY_2316 Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L7 YP_361125.1 2078089 R 246194 CDS YP_361126.1 78044548 3727667 complement(2078498..2081956) 1 NC_007503.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2081956 rpoC 3727667 rpoC Carboxydothermus hydrogenoformans Z-2901 DNA-directed RNA polymerase subunit beta' YP_361126.1 2078498 R 246194 CDS YP_361127.1 78043606 3728817 complement(2081980..2085378) 1 NC_007503.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2085378 rpoB 3728817 rpoB Carboxydothermus hydrogenoformans Z-2901 DNA-directed RNA polymerase subunit beta YP_361127.1 2081980 R 246194 CDS YP_361128.1 78043462 3728846 complement(2085548..2085643) 1 NC_007503.1 hypothetical protein 2085643 3728846 CHY_2319 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361128.1 2085548 R 246194 CDS YP_361129.1 78044942 3728067 complement(2085825..2086208) 1 NC_007503.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 2086208 rplL 3728067 rplL Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L7/L12 YP_361129.1 2085825 R 246194 CDS YP_361130.1 78042885 3727061 complement(2086276..2086806) 1 NC_007503.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2086806 rplJ 3727061 rplJ Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L10 YP_361130.1 2086276 R 246194 CDS YP_361131.1 78043380 3728765 complement(2086995..2087690) 1 NC_007503.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 2087690 rplA 3728765 rplA Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L1 YP_361131.1 2086995 R 246194 CDS YP_361132.1 78043974 3726209 complement(2087768..2088193) 1 NC_007503.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2088193 rplK 3726209 rplK Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L11 YP_361132.1 2087768 R 246194 CDS YP_361133.1 78043442 3728905 complement(2088215..2088736) 1 NC_007503.1 identified by similarity to SP:Q06795; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 2088736 nusG 3728905 nusG Carboxydothermus hydrogenoformans Z-2901 transcription termination/antitermination factor NusG YP_361133.1 2088215 R 246194 CDS YP_361134.1 78044057 3727173 complement(2088757..2089020) 1 NC_007503.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 2089020 secE 3727173 secE Carboxydothermus hydrogenoformans Z-2901 preprotein translocase subunit SecE YP_361134.1 2088757 R 246194 CDS YP_361135.1 78044352 3727470 complement(2089038..2089196) 1 NC_007503.1 identified by similarity to SP:Q06798; match to protein family HMM PF00471; match to protein family HMM TIGR01023; 50S ribosomal protein L33 2089196 rpmG 3727470 rpmG Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L33 YP_361135.1 2089038 R 246194 CDS YP_361136.1 78045181 3728307 complement(2089329..2090531) 1 NC_007503.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 2090531 tuf2 3728307 tuf2 Carboxydothermus hydrogenoformans Z-2901 elongation factor Tu YP_361136.1 2089329 R 246194 CDS YP_361137.1 78044624 3727745 complement(2090610..2090726) 1 NC_007503.1 hypothetical protein 2090726 3727745 CHY_2328 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361137.1 2090610 R 246194 CDS YP_361138.1 78044583 3727703 complement(2091217..2091870) 1 NC_007503.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 2091870 sigH 3727703 sigH Carboxydothermus hydrogenoformans Z-2901 RNA polymerase factor sigma-70 YP_361138.1 2091217 R 246194 CDS YP_361139.1 78044732 3727855 complement(2091974..2092480) 1 NC_007503.1 identified by similarity to PIR:G97287; match to protein family HMM PF05991; hypothetical protein 2092480 3727855 CHY_2334 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361139.1 2091974 R 246194 CDS YP_361140.1 78044128 3727244 complement(2092483..2093196) 1 NC_007503.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 2093196 3727244 CHY_2335 Carboxydothermus hydrogenoformans Z-2901 RNA methyltransferase YP_361140.1 2092483 R 246194 CDS YP_361141.1 78043908 3726531 complement(2093200..2093883) 1 NC_007503.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2093883 thyX 3726531 thyX Carboxydothermus hydrogenoformans Z-2901 FAD-dependent thymidylate synthase YP_361141.1 2093200 R 246194 CDS YP_361142.1 78042661 3728486 complement(2093880..2094269) 1 NC_007503.1 identified by similarity to GB:AAO37072.1; match to protein family HMM PF00636; hypothetical protein 2094269 3728486 CHY_2337 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361142.1 2093880 R 246194 CDS YP_361143.1 78044929 3728054 complement(2094273..2095670) 1 NC_007503.1 identified by similarity to SP:Q06752; match to protein family HMM PF01406; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase 2095670 cysS 3728054 cysS Carboxydothermus hydrogenoformans Z-2901 cysteinyl-tRNA synthetase YP_361143.1 2094273 R 246194 CDS YP_361144.1 78044375 3727493 complement(2095657..2096328) 1 NC_007503.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine acetyltransferase 2096328 cysE 3727493 cysE Carboxydothermus hydrogenoformans Z-2901 serine acetyltransferase YP_361144.1 2095657 R 246194 CDS YP_361145.1 78042984 3726554 complement(2096343..2097785) 1 NC_007503.1 identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 2097785 gltX 3726554 gltX Carboxydothermus hydrogenoformans Z-2901 glutamyl-tRNA synthetase YP_361145.1 2096343 R 246194 CDS YP_361146.1 78044676 3727798 complement(2097778..2098269) 1 NC_007503.1 identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 2098269 ispF 3727798 ispF Carboxydothermus hydrogenoformans Z-2901 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_361146.1 2097778 R 246194 CDS YP_361147.1 78043736 3728481 complement(2098266..2098967) 1 NC_007503.1 identified by match to protein family HMM PF01128; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2098967 ispD 3728481 ispD Carboxydothermus hydrogenoformans Z-2901 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_361147.1 2098266 R 246194 CDS YP_361148.1 78044031 3727146 complement(2098980..2100065) 1 NC_007503.1 identified by similarity to GB:AAO37077.1; match to protein family HMM PF01850; match to protein family HMM PF01938; PIN/TRAM domain-containing protein 2100065 3727146 CHY_2343 Carboxydothermus hydrogenoformans Z-2901 PIN/TRAM domain-containing protein YP_361148.1 2098980 R 246194 CDS YP_361149.1 78045099 3728225 complement(2100091..2100573) 1 NC_007503.1 identified by match to protein family HMM PF02559; CarD family transcriptional regulator 2100573 3728225 CHY_2344 Carboxydothermus hydrogenoformans Z-2901 CarD family transcriptional regulator YP_361149.1 2100091 R 246194 CDS YP_361150.1 78043281 3728724 2100742..2101137 1 NC_007503.1 identified by similarity to OMNI:NTL01TT2148; hypothetical protein 2101137 3728724 CHY_2345 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361150.1 2100742 D 246194 CDS YP_361151.1 78042711 3726961 complement(2101163..2102221) 1 NC_007503.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 2102221 3726961 CHY_2346 Carboxydothermus hydrogenoformans Z-2901 DNA integrity scanning protein DisA YP_361151.1 2101163 R 246194 CDS YP_361152.1 78044393 3727511 complement(2102231..2103565) 1 NC_007503.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2103565 radA 3727511 radA Carboxydothermus hydrogenoformans Z-2901 DNA repair protein RadA YP_361152.1 2102231 R 246194 CDS YP_361153.1 78043878 3726501 complement(2103669..2106104) 1 NC_007503.1 identified by similarity to SP:P37571; match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; negative regulator of genetic competence clpC/mecB 2106104 3726501 CHY_2348 Carboxydothermus hydrogenoformans Z-2901 negative regulator of genetic competence clpC/mecB YP_361153.1 2103669 R 246194 CDS YP_361154.1 78043739 3726265 complement(2106120..2107175) 1 NC_007503.1 identified by match to protein family HMM PF00217; ATP:guanido phosphotransferase 2107175 3726265 CHY_2349 Carboxydothermus hydrogenoformans Z-2901 ATP:guanido phosphotransferase YP_361154.1 2106120 R 246194 CDS YP_361155.1 78043178 3728697 complement(2107187..2107705) 1 NC_007503.1 identified by match to protein family HMM PF02151; UvrB/UvrC motif-containing protein 2107705 3728697 CHY_2350 Carboxydothermus hydrogenoformans Z-2901 UvrB/UvrC motif-containing protein YP_361155.1 2107187 R 246194 CDS YP_361156.1 78044917 3728042 complement(2107706..2108179) 1 NC_007503.1 identified by similarity to GP:7800894; match to protein family HMM PF05848; CtsR family transcriptional regulator 2108179 ctsR 3728042 ctsR Carboxydothermus hydrogenoformans Z-2901 CtsR family transcriptional regulator YP_361156.1 2107706 R 246194 CDS YP_361157.1 78043217 3728581 2108242..2108340 1 NC_007503.1 hypothetical protein 2108340 3728581 CHY_2352 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361157.1 2108242 D 246194 CDS YP_361158.1 78043818 3728428 complement(2114054..2115016) 1 NC_007503.1 identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein 2115016 3728428 CHY_2360 Carboxydothermus hydrogenoformans Z-2901 peptide ABC transporter ATP-binding protein YP_361158.1 2114054 R 246194 CDS YP_361159.1 78044273 3727390 complement(2115017..2116021) 1 NC_007503.1 identified by similarity to SP:P24136; match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein 2116021 3727390 CHY_2361 Carboxydothermus hydrogenoformans Z-2901 peptide ABC transporter ATP-binding protein YP_361159.1 2115017 R 246194 CDS YP_361160.1 78044187 3727303 complement(2116033..2116947) 1 NC_007503.1 identified by similarity to SP:P26904; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2116947 3727303 CHY_2362 Carboxydothermus hydrogenoformans Z-2901 oligopeptide ABC transporter permease YP_361160.1 2116033 R 246194 CDS YP_361161.1 78044890 3728015 complement(2116953..2117879) 1 NC_007503.1 identified by similarity to SP:P24138; match to protein family HMM PF00528; oligopeptide ABC transporter permease 2117879 3728015 CHY_2363 Carboxydothermus hydrogenoformans Z-2901 oligopeptide ABC transporter permease YP_361161.1 2116953 R 246194 CDS YP_361162.1 78044571 3727691 complement(2119803..2121269) 1 NC_007503.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 2121269 lysS 3727691 lysS Carboxydothermus hydrogenoformans Z-2901 lysyl-tRNA synthetase YP_361162.1 2119803 R 246194 CDS YP_361163.1 78045034 3728159 complement(2121282..2121755) 1 NC_007503.1 identified by similarity to SP:P80240; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA 2121755 greA 3728159 greA Carboxydothermus hydrogenoformans Z-2901 transcription elongation factor GreA YP_361163.1 2121282 R 246194 CDS YP_361164.1 78042972 3726541 complement(2121882..2122964) 1 NC_007503.1 identified by similarity to GB:AAM25513.1; match to protein family HMM PF01488; hypothetical protein 2122964 3726541 CHY_2367 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361164.1 2121882 R 246194 CDS YP_361165.1 78045088 3728214 complement(2122967..2123497) 1 NC_007503.1 identified by similarity to GB:AAM25515.1; hypothetical protein 2123497 3728214 CHY_2368 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361165.1 2122967 R 246194 CDS YP_361166.1 78044326 3727443 complement(2123596..2124561) 1 NC_007503.1 identified by similarity to GB:AAM23636.1; match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737; nifR3 family TIM-barrel protein 2124561 3727443 CHY_2369 Carboxydothermus hydrogenoformans Z-2901 nifR3 family TIM-barrel protein YP_361166.1 2123596 R 246194 CDS YP_361167.1 78043564 3726790 complement(2124536..2125309) 1 NC_007503.1 identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671; Baf family transcriptional activator 2125309 3726790 CHY_2370 Carboxydothermus hydrogenoformans Z-2901 Baf family transcriptional activator YP_361167.1 2124536 R 246194 CDS YP_361168.1 78045046 3728172 complement(2125293..2126279) 1 NC_007503.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor 2126279 birA 3728172 birA Carboxydothermus hydrogenoformans Z-2901 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor YP_361168.1 2125293 R 246194 CDS YP_361169.1 78043117 3726338 complement(2126276..2127127) 1 NC_007503.1 identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 2127127 nadC 3726338 nadC Carboxydothermus hydrogenoformans Z-2901 nicotinate-nucleotide pyrophosphorylase YP_361169.1 2126276 R 246194 CDS YP_361170.1 78043885 3726508 complement(2127132..2128691) 1 NC_007503.1 identified by similarity to SP:P38032; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM TIGR00551; L-aspartate oxidase 2128691 nadB 3726508 nadB Carboxydothermus hydrogenoformans Z-2901 L-aspartate oxidase YP_361170.1 2127132 R 246194 CDS YP_361171.1 78044719 3727841 complement(2128704..2129624) 1 NC_007503.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2129624 nadA 3727841 nadA Carboxydothermus hydrogenoformans Z-2901 quinolinate synthetase YP_361171.1 2128704 R 246194 CDS YP_361172.1 78042854 3727069 complement(2129636..2130019) 1 NC_007503.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2130019 panD 3727069 panD Carboxydothermus hydrogenoformans Z-2901 aspartate alpha-decarboxylase YP_361172.1 2129636 R 246194 CDS YP_361173.1 78043537 3726723 complement(2130021..2130872) 1 NC_007503.1 identified by similarity to SP:P52998; match to protein family HMM PF02569; match to protein family HMM TIGR00018; match to protein family HMM TIGR00125; pantoate--beta-alanine ligase 2130872 panC 3726723 panC Carboxydothermus hydrogenoformans Z-2901 pantoate--beta-alanine ligase YP_361173.1 2130021 R 246194 CDS YP_361174.1 78044137 3727253 complement(2130897..2131727) 1 NC_007503.1 identified by match to protein family HMM PF02548; match to protein family HMM TIGR00222; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2131727 panB 3727253 panB Carboxydothermus hydrogenoformans Z-2901 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_361174.1 2130897 R 246194 CDS YP_361175.1 78042931 3726991 complement(2131720..2132598) 1 NC_007503.1 identified by similarity to GB:AAO81619.1; match to protein family HMM PF01210; match to protein family HMM PF03807; hypothetical protein 2132598 3726991 CHY_2378 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361175.1 2131720 R 246194 CDS YP_361176.1 78044710 3727832 2132620..2132727 1 NC_007503.1 hypothetical protein 2132727 3727832 CHY_2379 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361176.1 2132620 D 246194 CDS YP_361177.1 78043923 3726351 complement(2132657..2132818) 1 NC_007503.1 hypothetical protein 2132818 3726351 CHY_2380 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361177.1 2132657 R 246194 CDS YP_361178.1 78044659 3727781 complement(2132815..2133300) 1 NC_007503.1 identified by similarity to SP:P29252; match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2133300 folK 3727781 folK Carboxydothermus hydrogenoformans Z-2901 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_361178.1 2132815 R 246194 CDS YP_361179.1 78043101 3726380 complement(2133302..2133661) 1 NC_007503.1 identified by similarity to SP:P28823; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 2133661 folB 3726380 folB Carboxydothermus hydrogenoformans Z-2901 dihydroneopterin aldolase YP_361179.1 2133302 R 246194 CDS YP_361180.1 78044228 3727345 complement(2133670..2134554) 1 NC_007503.1 identified by similarity to SP:P28822; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase 2134554 folP 3727345 folP Carboxydothermus hydrogenoformans Z-2901 dihydropteroate synthase YP_361180.1 2133670 R 246194 CDS YP_361181.1 78044331 3727448 complement(2134866..2135348) 1 NC_007503.1 identified by similarity to PIR:H97259; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 2135348 3727448 CHY_2384 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_361181.1 2134866 R 246194 CDS YP_361182.1 78045024 3728149 complement(2135414..2137084) 1 NC_007503.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2137084 fhs 3728149 fhs Carboxydothermus hydrogenoformans Z-2901 formate--tetrahydrofolate ligase YP_361182.1 2135414 R 246194 CDS YP_361183.1 78044537 3727656 complement(2137270..2137665) 1 NC_007503.1 identified by match to protein family HMM PF03061; thioesterase 2137665 3727656 CHY_2386 Carboxydothermus hydrogenoformans Z-2901 thioesterase YP_361183.1 2137270 R 246194 CDS YP_361184.1 78043437 3728900 complement(2137699..2137800) 1 NC_007503.1 hypothetical protein 2137800 3728900 CHY_2387 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361184.1 2137699 R 246194 CDS YP_361185.1 78043499 3726606 2138265..2138660 1 NC_007503.1 identified by similarity to GP:11065684; grdX protein 2138660 grdX 3726606 grdX Carboxydothermus hydrogenoformans Z-2901 grdX protein YP_361185.1 2138265 D 246194 CDS YP_361186.1 78044856 3727981 2138710..2139633 1 NC_007503.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase 2139633 trxB2 3727981 trxB2 Carboxydothermus hydrogenoformans Z-2901 thioredoxin-disulfide reductase YP_361186.1 2138710 D 246194 CDS YP_361187.1 78043049 3726425 2139648..2139977 1 NC_007503.1 identified by match to protein family HMM PF00085; thioredoxin 2139977 3726425 CHY_2390 Carboxydothermus hydrogenoformans Z-2901 thioredoxin YP_361187.1 2139648 D 246194 CDS YP_361188.1 78043612 3728823 2139989..2141275 1 NC_007503.1 identified by similarity to GP:2274933; glycine reductase proprotein GrdE 2141275 grdE 3728823 grdE Carboxydothermus hydrogenoformans Z-2901 glycine reductase proprotein GrdE YP_361188.1 2139989 D 246194 CDS YP_361189.1 78044558 3727677 2141338..2141808 1 NC_007503.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 2141808 grdA 3727677 grdA Carboxydothermus hydrogenoformans Z-2901 glycine/sarcosine/betaine reductase complex protein A YP_361189.1 2141338 D 246194 CDS YP_361190.1 78044722 3727844 2141836..2143143 1 NC_007503.1 Selenoprotein. identified by similarity to SP:P52217; match to protein family HMM PF07355; match to protein family HMM TIGR01917; match to protein family HMM TIGR01918; glycine reductase, selenoprotein B 2143143 grdB 3727844 grdB Carboxydothermus hydrogenoformans Z-2901 glycine reductase, selenoprotein B YP_361190.1 2141836 D 246194 CDS YP_361191.1 78044225 3727342 2143250..2144779 1 NC_007503.1 identified by similarity to SP:P54935; glycine reductase complex, protein C 2144779 grdC 3727342 grdC Carboxydothermus hydrogenoformans Z-2901 glycine reductase complex, protein C YP_361191.1 2143250 D 246194 CDS YP_361192.1 78043649 3728451 2144794..2145939 1 NC_007503.1 identified by similarity to GP:2708734; match to protein family HMM PF02504; glycine reductase complex, protein D 2145939 grdD 3728451 grdD Carboxydothermus hydrogenoformans Z-2901 glycine reductase complex, protein D YP_361192.1 2144794 D 246194 CDS YP_361193.1 78044587 3727708 complement(2146058..2146228) 1 NC_007503.1 hypothetical protein 2146228 3727708 CHY_2396 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361193.1 2146058 R 246194 CDS YP_361194.1 78043073 3726390 complement(2146278..2147396) 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF04015; (Fe-S)-binding protein 2147396 3726390 CHY_2397 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_361194.1 2146278 R 246194 CDS YP_361195.1 78044765 3727889 complement(2147567..2148508) 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2148508 3727889 CHY_2398 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_361195.1 2147567 R 246194 CDS YP_361196.1 78042718 3726929 complement(2148480..2149877) 1 NC_007503.1 identified by similarity to SP:P29946; match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00379; cobyrinic acid a,c-diamide synthase 2149877 cobB2 3726929 cobB2 Carboxydothermus hydrogenoformans Z-2901 cobyrinic acid a,c-diamide synthase YP_361196.1 2148480 R 246194 CDS YP_361197.1 78045044 3728170 complement(2149936..2151279) 1 NC_007503.1 identified by match to protein family HMM PF03601; hypothetical protein 2151279 3728170 CHY_2400 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361197.1 2149936 R 246194 CDS YP_361198.1 78043456 3728840 complement(2151401..2152003) 1 NC_007503.1 identified by similarity to PIR:C70383; hypothetical protein 2152003 3728840 CHY_2401 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361198.1 2151401 R 246194 CDS YP_361199.1 78044295 3727412 complement(2152004..2152321) 1 NC_007503.1 identified by similarity to SP:P45573; match to protein family HMM PF04358; dissimilatory sulfite reductase subunit C 2152321 dsrC 3727412 dsrC Carboxydothermus hydrogenoformans Z-2901 dissimilatory sulfite reductase subunit C YP_361199.1 2152004 R 246194 CDS YP_361200.1 78044369 3727487 complement(2152349..2153677) 1 NC_007503.1 identified by similarity to SP:P96797; match to protein family HMM PF00037; match to protein family HMM PF02754; reductase, iron-sulfur cluster-binding subunit 2153677 3727487 CHY_2403 Carboxydothermus hydrogenoformans Z-2901 reductase, iron-sulfur cluster-binding subunit YP_361200.1 2152349 R 246194 CDS YP_361201.1 78044954 3728079 complement(2153695..2154411) 1 NC_007503.1 nitrate reductase 2154411 3728079 CHY_2404 Carboxydothermus hydrogenoformans Z-2901 nitrate reductase YP_361201.1 2153695 R 246194 CDS YP_361202.1 78044690 3727812 complement(2154427..2154615) 1 NC_007503.1 identified by similarity to SP:P08813; match to protein family HMM PF00037; ferredoxin 2154615 3727812 CHY_2405 Carboxydothermus hydrogenoformans Z-2901 ferredoxin YP_361202.1 2154427 R 246194 CDS YP_361203.1 78043677 3726708 complement(2154636..2155928) 1 NC_007503.1 identified by match to protein family HMM PF00037; match to protein family HMM PF02754; reductase, iron-sulfur cluster-binding subunit 2155928 3726708 CHY_2406 Carboxydothermus hydrogenoformans Z-2901 reductase, iron-sulfur cluster-binding subunit YP_361203.1 2154636 R 246194 CDS YP_361204.1 78044513 3727632 complement(2156034..2157536) 1 NC_007503.1 identified by similarity to GP:12655814; match to protein family HMM PF00590; match to protein family HMM PF02602; match to protein family HMM TIGR01469; uroporphyrinogen III synthase/methyltransferase 2157536 3727632 CHY_2407 Carboxydothermus hydrogenoformans Z-2901 uroporphyrinogen III synthase/methyltransferase YP_361204.1 2156034 R 246194 CDS YP_361205.1 78043717 3726670 complement(2157614..2157799) 1 NC_007503.1 identified by similarity to GP:13560123; dissimilatory sulfite reductase subunit D 2157799 3726670 CHY_2408 Carboxydothermus hydrogenoformans Z-2901 dissimilatory sulfite reductase subunit D YP_361205.1 2157614 R 246194 CDS YP_361206.1 78044864 3727989 complement(2157813..2158871) 1 NC_007503.1 identified by similarity to GP:902748; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02066; dissimilatory sulfite reductase subunit B 2158871 dsrB 3727989 dsrB Carboxydothermus hydrogenoformans Z-2901 dissimilatory sulfite reductase subunit B YP_361206.1 2157813 R 246194 CDS YP_361207.1 78042818 3726835 complement(2158873..2160063) 1 NC_007503.1 identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064; dissimilatory sulfite reductase subunit alpha 2160063 dsrA 3726835 dsrA Carboxydothermus hydrogenoformans Z-2901 dissimilatory sulfite reductase subunit alpha YP_361207.1 2158873 R 246194 CDS YP_361208.1 78043305 3728610 complement(2160390..2161997) 1 NC_007503.1 identified by similarity to SP:P29212; match to protein family HMM PF00501; long-chain-fatty-acid--CoA ligase 2161997 fadD5 3728610 fadD5 Carboxydothermus hydrogenoformans Z-2901 long-chain-fatty-acid--CoA ligase YP_361208.1 2160390 R 246194 CDS YP_361209.1 78044253 3727370 complement(2162124..2162285) 1 NC_007503.1 hypothetical protein 2162285 3727370 CHY_2412 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361209.1 2162124 R 246194 CDS YP_361210.1 78043199 3728562 complement(2162305..2162697) 1 NC_007503.1 identified by similarity to PIR:B83975; match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase 2162697 3728562 CHY_2413 Carboxydothermus hydrogenoformans Z-2901 thioesterase YP_361210.1 2162305 R 246194 CDS YP_361211.1 78043804 3726622 2162830..2163957 1 NC_007503.1 identified by match to protein family HMM PF03239; FTR1 family iron permease 2163957 3726622 CHY_2414 Carboxydothermus hydrogenoformans Z-2901 FTR1 family iron permease YP_361211.1 2162830 D 246194 CDS YP_361212.1 78044950 3728075 2163978..2164091 1 NC_007503.1 hypothetical protein 2164091 3728075 CHY_2415 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361212.1 2163978 D 246194 CDS YP_361213.1 78044356 3727474 2164187..2164600 1 NC_007503.1 identified by match to protein family HMM PF00011; heat shock protein 20 2164600 3727474 CHY_2416 Carboxydothermus hydrogenoformans Z-2901 heat shock protein 20 YP_361213.1 2164187 D 246194 CDS YP_361214.1 78044177 3727293 2164697..2165869 1 NC_007503.1 identified by similarity to SP:P52067; match to protein family HMM PF07690; fosmidomycin resistance protein 2165869 3727293 CHY_2417 Carboxydothermus hydrogenoformans Z-2901 fosmidomycin resistance protein YP_361214.1 2164697 D 246194 CDS YP_361215.1 78042789 3726884 2165936..2166784 1 NC_007503.1 identified by similarity to GB:AAP09820.1; match to protein family HMM PF02645; match to protein family HMM TIGR00762; degV family protein 2166784 3726884 CHY_2418 Carboxydothermus hydrogenoformans Z-2901 degV family protein YP_361215.1 2165936 D 246194 CDS YP_361216.1 78043114 3726335 complement(2166842..2167279) 1 NC_007503.1 identified by match to protein family HMM PF00011; heat shock protein 20 2167279 3726335 CHY_2419 Carboxydothermus hydrogenoformans Z-2901 heat shock protein 20 YP_361216.1 2166842 R 246194 CDS YP_361217.1 78043185 3728704 complement(2167332..2168129) 1 NC_007503.1 identified by match to protein family HMM PF03180; NLPA family lipoprotein 2168129 3728704 CHY_2420 Carboxydothermus hydrogenoformans Z-2901 NLPA family lipoprotein YP_361217.1 2167332 R 246194 CDS YP_361218.1 78044621 3727742 complement(2168149..2168796) 1 NC_007503.1 identified by match to protein family HMM PF00528; ABC transporter permease 2168796 3727742 CHY_2421 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_361218.1 2168149 R 246194 CDS YP_361219.1 78044077 3727193 complement(2168799..2169812) 1 NC_007503.1 identified by similarity to SP:P30750; match to protein family HMM PF00005; ABC transporter ATP-binding protein 2169812 3727193 CHY_2422 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_361219.1 2168799 R 246194 CDS YP_361220.1 78044252 3727369 complement(2170089..2170937) 1 NC_007503.1 identified by similarity to GB:AAM25541.1; ABC transporter permease 2170937 3727369 CHY_2423 Carboxydothermus hydrogenoformans Z-2901 ABC transporter permease YP_361220.1 2170089 R 246194 CDS YP_361221.1 78043083 3726361 complement(2170921..2171826) 1 NC_007503.1 identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2171826 3726361 CHY_2424 Carboxydothermus hydrogenoformans Z-2901 ABC transporter ATP-binding protein YP_361221.1 2170921 R 246194 CDS YP_361222.1 78043450 3728913 complement(2171828..2172877) 1 NC_007503.1 identified by similarity to GB:AAM25539.1; hypothetical protein 2172877 3728913 CHY_2425 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361222.1 2171828 R 246194 CDS YP_361223.1 78043866 3726685 complement(2172912..2173343) 1 NC_007503.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance; RNA polymerase sigma factor SigX 2173343 3726685 CHY_2426 Carboxydothermus hydrogenoformans Z-2901 RNA polymerase sigma factor SigX YP_361223.1 2172912 R 246194 CDS YP_361224.1 78044736 3727859 2173535..2173807 1 NC_007503.1 hypothetical protein 2173807 3727859 CHY_2427 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361224.1 2173535 D 246194 CDS YP_361225.1 78044267 3727384 2173820..2174065 1 NC_007503.1 identified by similarity to PIR:B72392; hypothetical protein 2174065 3727384 CHY_2428 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361225.1 2173820 D 246194 CDS YP_361226.1 78044204 3727321 2174078..2174326 1 NC_007503.1 identified by similarity to GB:AAM04743.1; hypothetical protein 2174326 3727321 CHY_2429 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361226.1 2174078 D 246194 CDS YP_361227.1 78044028 3727143 complement(2175468..2176454) 1 NC_007503.1 identified by similarity to GB:AAM23558.1; match to protein family HMM PF01699; Na+/Ca+ exchanger protein 2176454 3727143 CHY_2431 Carboxydothermus hydrogenoformans Z-2901 Na+/Ca+ exchanger protein YP_361227.1 2175468 R 246194 CDS YP_361228.1 78043969 3726749 2176854..2177354 1 NC_007503.1 hypothetical protein 2177354 3726749 CHY_2432 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361228.1 2176854 D 246194 CDS YP_361229.1 78043749 3726275 complement(2177364..2178113) 1 NC_007503.1 hypothetical protein 2178113 3726275 CHY_2433 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361229.1 2177364 R 246194 CDS YP_361230.1 78044802 3727927 complement(2179159..2180199) 1 NC_007503.1 identified by similarity to GB:AAO35621.1; lipoprotein 2180199 3727927 CHY_2436 Carboxydothermus hydrogenoformans Z-2901 lipoprotein YP_361230.1 2179159 R 246194 CDS YP_361231.1 78043536 3726722 complement(2180253..2180789) 1 NC_007503.1 identified by match to protein family HMM PF00037; 4Fe-4S ferredoxin 2180789 3726722 CHY_2437 Carboxydothermus hydrogenoformans Z-2901 4Fe-4S ferredoxin YP_361231.1 2180253 R 246194 CDS YP_361232.1 78042809 3726865 complement(2180849..2180947) 1 NC_007503.1 hypothetical protein 2180947 3726865 CHY_2438 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361232.1 2180849 R 246194 CDS YP_361233.1 78043549 3726774 complement(2180952..2182883) 1 NC_007503.1 cell division protein FtsA 2182883 3726774 CHY_2439 Carboxydothermus hydrogenoformans Z-2901 cell division protein FtsA YP_361233.1 2180952 R 246194 CDS YP_361234.1 78044411 3727529 complement(2182950..2184275) 1 NC_007503.1 identified by match to protein family HMM PF01743; match to protein family HMM PF01966; poly(A) polymerase 2184275 3727529 CHY_2440 Carboxydothermus hydrogenoformans Z-2901 poly(A) polymerase YP_361234.1 2182950 R 246194 CDS YP_361235.1 78044129 3727245 2184410..2185651 1 NC_007503.1 identified by similarity to GB:AAO08161.1; match to protein family HMM PF01966; match to protein family HMM TIGR00277; HDIG domain-containing protein 2185651 3727245 CHY_2441 Carboxydothermus hydrogenoformans Z-2901 HDIG domain-containing protein YP_361235.1 2184410 D 246194 CDS YP_361236.1 78044365 3727483 complement(2185830..2187503) 1 NC_007503.1 identified by similarity to SP:P23886; match to protein family HMM PF00005; transport ATP-binding protein CydC 2187503 cydC 3727483 cydC Carboxydothermus hydrogenoformans Z-2901 transport ATP-binding protein CydC YP_361236.1 2185830 R 246194 CDS YP_361237.1 78044985 3728110 complement(2187500..2189224) 1 NC_007503.1 identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM PF00664; transport ATP-binding protein CydD 2189224 cydD 3728110 cydD Carboxydothermus hydrogenoformans Z-2901 transport ATP-binding protein CydD YP_361237.1 2187500 R 246194 CDS YP_361238.1 78043602 3728755 complement(2189300..2190316) 1 NC_007503.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II 2190316 cydB 3728755 cydB Carboxydothermus hydrogenoformans Z-2901 cytochrome d ubiquinol oxidase subunit II YP_361238.1 2189300 R 246194 CDS YP_361239.1 78044468 3727587 complement(2190318..2191652) 1 NC_007503.1 identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I 2191652 cydA 3727587 cydA Carboxydothermus hydrogenoformans Z-2901 cytochrome d ubiquinol oxidase subunit I YP_361239.1 2190318 R 246194 CDS YP_361240.1 78043860 3726679 complement(2191706..2192137) 1 NC_007503.1 identified by similarity to GB:AAO35192.1; match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 2192137 3726679 CHY_2446 Carboxydothermus hydrogenoformans Z-2901 rrf2 family protein YP_361240.1 2191706 R 246194 CDS YP_361241.1 78044404 3727522 complement(2192240..2193481) 1 NC_007503.1 identified by similarity to SP:Q9PG89; match to protein family HMM PF02646; RmuC domain-containing protein 2193481 3727522 CHY_2447 Carboxydothermus hydrogenoformans Z-2901 RmuC domain-containing protein YP_361241.1 2192240 R 246194 CDS YP_361242.1 78044992 3728117 complement(2193643..2194569) 1 NC_007503.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 2194569 3728117 CHY_2448 Carboxydothermus hydrogenoformans Z-2901 biotin synthase YP_361242.1 2193643 R 246194 CDS YP_361243.1 78042863 3727078 complement(2194573..2195499) 1 NC_007503.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; urea amidolyase 2195499 3727078 CHY_2449 Carboxydothermus hydrogenoformans Z-2901 urea amidolyase YP_361243.1 2194573 R 246194 CDS YP_361244.1 78043494 3726601 complement(2195492..2196256) 1 NC_007503.1 identified by match to protein family HMM PF03746; LamB/YcsF family protein 2196256 3726601 CHY_2450 Carboxydothermus hydrogenoformans Z-2901 LamB/YcsF family protein YP_361244.1 2195492 R 246194 CDS YP_361245.1 78044107 3727223 complement(2196243..2196938) 1 NC_007503.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370; hypothetical protein 2196938 3727223 CHY_2451 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361245.1 2196243 R 246194 CDS YP_361246.1 78044679 3727801 complement(2196950..2198143) 1 NC_007503.1 hypothetical protein 2198143 3727801 CHY_2452 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361246.1 2196950 R 246194 CDS YP_361247.1 78043433 3728896 2198312..2198989 1 NC_007503.1 hypothetical protein 2198989 3728896 CHY_2453 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361247.1 2198312 D 246194 CDS YP_361248.1 78044099 3727215 complement(2199122..2199787) 1 NC_007503.1 hypothetical protein 2199787 3727215 CHY_2454 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361248.1 2199122 R 246194 CDS YP_361249.1 78044618 3727739 2199927..2200847 1 NC_007503.1 identified by match to protein family HMM PF00753; metallo-beta-lactamase 2200847 3727739 CHY_2455 Carboxydothermus hydrogenoformans Z-2901 metallo-beta-lactamase YP_361249.1 2199927 D 246194 CDS YP_361250.1 78043222 3728586 complement(2201206..2202600) 1 NC_007503.1 identified by similarity to SP:O06005; match to protein family HMM PF00324; amino acid permease 2202600 3728586 CHY_2456 Carboxydothermus hydrogenoformans Z-2901 amino acid permease YP_361250.1 2201206 R 246194 CDS YP_361251.1 78043662 3728464 complement(2202648..2203541) 1 NC_007503.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718; iron-sulfur-dependent L-serine dehydratase subunit alpha 2203541 sdhA2 3728464 sdhA2 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-dependent L-serine dehydratase subunit alpha YP_361251.1 2202648 R 246194 CDS YP_361252.1 78044395 3727513 complement(2203552..2204208) 1 NC_007503.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719; iron-sulfur-dependent L-serine dehydratase subunit beta 2204208 sdhB2 3727513 sdhB2 Carboxydothermus hydrogenoformans Z-2901 iron-sulfur-dependent L-serine dehydratase subunit beta YP_361252.1 2203552 R 246194 CDS YP_361253.1 78043400 3728862 complement(2204290..2205519) 1 NC_007503.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 2205519 ilvA2 3728862 ilvA2 Carboxydothermus hydrogenoformans Z-2901 threonine dehydratase YP_361253.1 2204290 R 246194 CDS YP_361254.1 78043981 3726216 complement(2205542..2205919) 1 NC_007503.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 2205919 3726216 CHY_2460 Carboxydothermus hydrogenoformans Z-2901 endoribonuclease L-PSP YP_361254.1 2205542 R 246194 CDS YP_361255.1 78044959 3728084 complement(2205916..2206590) 1 NC_007503.1 identified by similarity to GB:CAD63129.1; PAC domain-containing protein 2206590 3728084 CHY_2461 Carboxydothermus hydrogenoformans Z-2901 PAC domain-containing protein YP_361255.1 2205916 R 246194 CDS YP_361256.1 78042891 3727028 complement(2207062..2207595) 1 NC_007503.1 hypothetical protein 2207595 3727028 CHY_2462 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361256.1 2207062 R 246194 CDS YP_361257.1 78043093 3726371 2207782..2208168 1 NC_007503.1 hypothetical protein 2208168 3726371 CHY_2463 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361257.1 2207782 D 246194 CDS YP_361258.1 78045216 3728342 2208152..2209474 1 NC_007503.1 identified by match to protein family HMM PF00037; (Fe-S)-binding protein 2209474 3728342 CHY_2464 Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_361258.1 2208152 D 246194 CDS YP_361259.1 78044452 3727571 complement(2209526..2210368) 1 NC_007503.1 identified by similarity to PIR:AB2284; match to protein family HMM PF01972; hypothetical protein 2210368 3727571 CHY_2465 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361259.1 2209526 R 246194 CDS YP_361260.1 78044419 3727537 2210299..2210484 1 NC_007503.1 hypothetical protein 2210484 3727537 CHY_2466 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361260.1 2210299 D 246194 CDS YP_361261.1 78043645 3728447 complement(2210398..2212218) 1 NC_007503.1 identified by similarity to PIR:A72309; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 2212218 3728447 CHY_2467 Carboxydothermus hydrogenoformans Z-2901 diguanylate cyclase YP_361261.1 2210398 R 246194 CDS YP_361262.1 78043092 3726370 complement(2212243..2213025) 1 NC_007503.1 identified by similarity to PIR:G72311; match to protein family HMM PF04536; hypothetical protein 2213025 3726370 CHY_2468 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361262.1 2212243 R 246194 CDS YP_361263.1 78044180 3727296 complement(2213036..2213602) 1 NC_007503.1 identified by similarity to PIR:F72311; match to protein family HMM PF04011; hypothetical protein 2213602 3727296 CHY_2469 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361263.1 2213036 R 246194 CDS YP_361264.1 78042783 3726878 2213926..2214726 1 NC_007503.1 identified by match to protein family HMM PF01925; hypothetical protein 2214726 3726878 CHY_2470 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361264.1 2213926 D 246194 CDS YP_361265.1 78044650 3727772 complement(2214723..2215145) 1 NC_007503.1 hypothetical protein 2215145 3727772 CHY_2471 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361265.1 2214723 R 246194 CDS YP_361266.1 78044477 3727596 complement(2215290..2215724) 1 NC_007503.1 identified by match to protein family HMM PF04657; hypothetical protein 2215724 3727596 CHY_2472 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361266.1 2215290 R 246194 CDS YP_361267.1 78043875 3726498 complement(2215796..2216047) 1 NC_007503.1 identified by similarity to SP:P23261; match to protein family HMM PF07875; hypothetical protein 2216047 3726498 CHY_2473 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361267.1 2215796 R 246194 CDS YP_361268.1 78043706 3726658 complement(2216052..2216255) 1 NC_007503.1 identified by similarity to GB:AAM25374.1; hypothetical protein 2216255 3726658 CHY_2474 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361268.1 2216052 R 246194 CDS YP_361269.1 78044532 3727651 complement(2216327..2216608) 1 NC_007503.1 identified by similarity to GP:19881355; (Fe-S)-binding protein 2216608 fixX 3727651 fixX Carboxydothermus hydrogenoformans Z-2901 (Fe-S)-binding protein YP_361269.1 2216327 R 246194 CDS YP_361270.1 78044359 3727477 complement(2216605..2217900) 1 NC_007503.1 identified by similarity to SP:P31575; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; match to protein family HMM PF07992; oxidoreductase FixC 2217900 fixC 3727477 fixC Carboxydothermus hydrogenoformans Z-2901 oxidoreductase FixC YP_361270.1 2216605 R 246194 CDS YP_361271.1 78043618 3728829 complement(2217901..2218911) 1 NC_007503.1 identified by similarity to SP:P53578; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha 2218911 fixB 3728829 fixB Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit alpha YP_361271.1 2217901 R 246194 CDS YP_361272.1 78044849 3727974 complement(2218984..2219799) 1 NC_007503.1 identified by similarity to SP:P53577; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta 2219799 fixA 3727974 fixA Carboxydothermus hydrogenoformans Z-2901 electron transfer flavoprotein subunit beta YP_361272.1 2218984 R 246194 CDS YP_361273.1 78045085 3728211 complement(2220067..2221302) 1 NC_007503.1 identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238; L-lysine 2,3-aminomutase 2221302 3728211 CHY_2479 Carboxydothermus hydrogenoformans Z-2901 L-lysine 2,3-aminomutase YP_361273.1 2220067 R 246194 CDS YP_361274.1 78044087 3727203 2221469..2221594 1 NC_007503.1 hypothetical protein 2221594 3727203 CHY_2480 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361274.1 2221469 D 246194 CDS YP_361275.1 78044683 3727805 complement(2221581..2222318) 1 NC_007503.1 identified by similarity to SP:P39852; match to protein family HMM PF02811; phosphoesterase 2222318 3727805 CHY_2481 Carboxydothermus hydrogenoformans Z-2901 phosphoesterase YP_361275.1 2221581 R 246194 CDS YP_361276.1 78042930 3726990 complement(2222478..2222852) 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 2222852 3726990 CHY_2482 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_361276.1 2222478 R 246194 CDS YP_361277.1 78043530 3726716 complement(2222858..2223367) 1 NC_007503.1 identified by similarity to OMNI:NTL01TT0656; hypothetical protein 2223367 3726716 CHY_2483 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361277.1 2222858 R 246194 CDS YP_361278.1 78044983 3728108 2223508..2224092 1 NC_007503.1 identified by similarity to PIR:S76377; match to protein family HMM PF05685; hypothetical protein 2224092 3728108 CHY_2484 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361278.1 2223508 D 246194 CDS YP_361279.1 78043744 3726270 complement(2224119..2225975) 1 NC_007503.1 identified by similarity to SP:Q02114; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2225975 3726270 CHY_2485 Carboxydothermus hydrogenoformans Z-2901 N-acetylmuramoyl-L-alanine amidase YP_361279.1 2224119 R 246194 CDS YP_361280.1 78044745 3727868 complement(2226224..2227675) 1 NC_007503.1 identified by match to protein family HMM PF01841; transglutaminase 2227675 3727868 CHY_2486 Carboxydothermus hydrogenoformans Z-2901 transglutaminase YP_361280.1 2226224 R 246194 CDS YP_361281.1 78043173 3728692 complement(2227791..2227886) 1 NC_007503.1 hypothetical protein 2227886 3728692 CHY_2487 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361281.1 2227791 R 246194 CDS YP_361282.1 78043585 3728738 2228035..2231682 1 NC_007503.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872; 5'-nucleotidase 2231682 3728738 CHY_2488 Carboxydothermus hydrogenoformans Z-2901 5'-nucleotidase YP_361282.1 2228035 D 246194 CDS YP_361283.1 78043413 3728778 complement(2231738..2232979) 1 NC_007503.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; methyl-accepting chemotaxis protein 2232979 3728778 CHY_2489 Carboxydothermus hydrogenoformans Z-2901 methyl-accepting chemotaxis protein YP_361283.1 2231738 R 246194 CDS YP_361284.1 78044061 3727177 2233292..2233759 1 NC_007503.1 identified by similarity to PIR:G72593; hypothetical protein 2233759 3727177 CHY_2490 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361284.1 2233292 D 246194 CDS YP_361285.1 78042662 3728487 complement(2233856..2235271) 1 NC_007503.1 identified by match to protein family HMM PF00089; match to protein family HMM PF00801; protease domain-containing protein 2235271 3728487 CHY_2491 Carboxydothermus hydrogenoformans Z-2901 protease domain-containing protein YP_361285.1 2233856 R 246194 CDS YP_361286.1 78042934 3726994 complement(2235377..2235868) 1 NC_007503.1 identified by similarity to PIR:B97342; match to protein family HMM PF01966; HD domain-containing protein 2235868 3726994 CHY_2492 Carboxydothermus hydrogenoformans Z-2901 HD domain-containing protein YP_361286.1 2235377 R 246194 CDS YP_361287.1 78043520 3726569 complement(2236244..2236819) 1 NC_007503.1 identified by similarity to OMNI:NTL01AA00825; match to protein family HMM PF05685; hypothetical protein 2236819 3726569 CHY_2493 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361287.1 2236244 R 246194 CDS YP_361288.1 78043957 3726737 complement(2237159..2237338) 1 NC_007503.1 identified by similarity to SP:Q58700; hypothetical protein 2237338 3726737 CHY_2494 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361288.1 2237159 R 246194 CDS YP_361289.1 78044835 3727960 complement(2237331..2237654) 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase domain-containing protein 2237654 3727960 CHY_2495 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase domain-containing protein YP_361289.1 2237331 R 246194 CDS YP_361290.1 78043385 3728770 2237984..2238181 1 NC_007503.1 identified by similarity to GB:BAB62465.1; match to protein family HMM PF07927; hypothetical protein 2238181 3728770 CHY_2496 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361290.1 2237984 D 246194 CDS YP_361291.1 78044178 3727294 2238227..2238640 1 NC_007503.1 identified by similarity to PIR:T13557; match to protein family HMM PF03681; hypothetical protein 2238640 3727294 CHY_2497 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361291.1 2238227 D 246194 CDS YP_361292.1 78045231 3728357 complement(2238677..2238904) 1 NC_007503.1 hypothetical protein 2238904 3728357 CHY_2498 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361292.1 2238677 R 246194 CDS YP_361293.1 78042667 3728493 complement(2239528..2239734) 1 NC_007503.1 hypothetical protein 2239734 3728493 CHY_2499 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361293.1 2239528 R 246194 CDS YP_361294.1 78043100 3726379 2239729..2239824 1 NC_007503.1 hypothetical protein 2239824 3726379 CHY_2500 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361294.1 2239729 D 246194 CDS YP_361295.1 78043853 3726594 2239839..2239988 1 NC_007503.1 hypothetical protein 2239988 3726594 CHY_2501 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361295.1 2239839 D 246194 CDS YP_361296.1 78045176 3728302 2240206..2240517 1 NC_007503.1 identified by similarity to GP:2244973; hypothetical protein 2240517 3728302 CHY_2502 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361296.1 2240206 D 246194 CDS YP_361297.1 78043482 3728809 2240483..2240956 1 NC_007503.1 identified by match to protein family HMM TIGR00305; hypothetical protein 2240956 3728809 CHY_2503 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361297.1 2240483 D 246194 CDS YP_361298.1 78043470 3728796 complement(2240953..2241099) 1 NC_007503.1 hypothetical protein 2241099 3728796 CHY_2504 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361298.1 2240953 R 246194 CDS YP_361299.1 78043688 3726251 complement(2241146..2241256) 1 NC_007503.1 hypothetical protein 2241256 3726251 CHY_2505 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361299.1 2241146 R 246194 CDS YP_361300.1 78042882 3727058 complement(2242358..2243563) 1 NC_007503.1 Although this ORF is not disrupted, an ISChy2 element is inserted upstream within the left end-sequences.; identified by match to protein family HMM PF00665; ISChy4, transposase 2243563 3727058 CHY_2507 Carboxydothermus hydrogenoformans Z-2901 ISChy4, transposase YP_361300.1 2242358 R 246194 CDS YP_361301.1 78043674 3726705 complement(2243902..2245185) 1 NC_007503.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISChy2, transposase 2245185 3726705 CHY_2508 Carboxydothermus hydrogenoformans Z-2901 ISChy2, transposase YP_361301.1 2243902 R 246194 CDS YP_361302.1 78044596 3727717 complement(2245536..2246393) 1 NC_007503.1 hypothetical protein 2246393 3727717 CHY_2509 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361302.1 2245536 R 246194 CDS YP_361303.1 78043020 3726474 2246771..2247184 1 NC_007503.1 identified by similarity to PIR:T13557; match to protein family HMM PF03681; hypothetical protein 2247184 3726474 CHY_2510 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361303.1 2246771 D 246194 CDS YP_361304.1 78044798 3727923 complement(2247158..2247328) 1 NC_007503.1 hypothetical protein 2247328 3727923 CHY_2511 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361304.1 2247158 R 246194 CDS YP_361305.1 78043720 3728465 complement(2247665..2247979) 1 NC_007503.1 identified by similarity to GB:AAO90189.1; match to protein family HMM TIGR01552; prevent-host-death family protein 2247979 3728465 CHY_2512 Carboxydothermus hydrogenoformans Z-2901 prevent-host-death family protein YP_361305.1 2247665 R 246194 CDS YP_361306.1 78042707 3726957 complement(2248210..2248338) 1 NC_007503.1 identified by similarity to PIR:H59093; hypothetical protein 2248338 3726957 CHY_2513 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361306.1 2248210 R 246194 CDS YP_361307.1 78044156 3727272 complement(2248343..2248918) 1 NC_007503.1 identified by similarity to PIR:B70403; match to protein family HMM PF05685; hypothetical protein 2248918 3727272 CHY_2514 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361307.1 2248343 R 246194 CDS YP_361308.1 78044827 3727952 complement(2249138..2249329) 1 NC_007503.1 hypothetical protein 2249329 3727952 CHY_2515 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361308.1 2249138 R 246194 CDS YP_361309.1 78043514 3726563 complement(2249369..2250001) 1 NC_007503.1 identified by match to protein family HMM PF01841; transglutaminase 2250001 3726563 CHY_2516 Carboxydothermus hydrogenoformans Z-2901 transglutaminase YP_361309.1 2249369 R 246194 CDS YP_361310.1 78044933 3728058 2250187..2250711 1 NC_007503.1 identified by similarity to GB:AAC98137.1; hypothetical protein 2250711 3728058 CHY_2517 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361310.1 2250187 D 246194 CDS YP_361311.1 78043439 3728902 2250848..2252095 1 NC_007503.1 identified by match to protein family HMM PF00665; ISChy6, transposase 2252095 3728902 CHY_2518 Carboxydothermus hydrogenoformans Z-2901 ISChy6, transposase YP_361311.1 2250848 D 246194 CDS YP_361312.1 78043208 3728572 2252099..2253049 1 NC_007503.1 identified by similarity to SP:P45754; general secretion pathway domain-containing protein 2253049 3728572 CHY_2519 Carboxydothermus hydrogenoformans Z-2901 general secretion pathway domain-containing protein YP_361312.1 2252099 D 246194 CDS YP_361313.1 78044653 3727775 complement(2253031..2253327) 1 NC_007503.1 hypothetical protein 2253327 3727775 CHY_2520 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361313.1 2253031 R 246194 CDS YP_361314.1 78043324 3728649 2253321..2253527 1 NC_007503.1 hypothetical protein 2253527 3728649 CHY_2521 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361314.1 2253321 D 246194 CDS YP_361315.1 78043936 3726403 complement(2253540..2253632) 1 NC_007503.1 hypothetical protein 2253632 3726403 CHY_2522 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361315.1 2253540 R 246194 CDS YP_361316.1 78043845 3726586 complement(2253685..2257422) 1 NC_007503.1 hypothetical protein 2257422 3726586 CHY_2523 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361316.1 2253685 R 246194 CDS YP_361317.1 78043554 3726779 complement(2257304..2257462) 1 NC_007503.1 hypothetical protein 2257462 3726779 CHY_2524 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361317.1 2257304 R 246194 CDS YP_361318.1 78043223 3728587 complement(2257410..2257532) 1 NC_007503.1 hypothetical protein 2257532 3728587 CHY_2525 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361318.1 2257410 R 246194 CDS YP_361319.1 78043159 3728522 2257547..2257642 1 NC_007503.1 hypothetical protein 2257642 3728522 CHY_2526 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361319.1 2257547 D 246194 CDS YP_361320.1 78042877 3727053 2257829..2258002 1 NC_007503.1 hypothetical protein 2258002 3727053 CHY_2527 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361320.1 2257829 D 246194 CDS YP_361321.1 78044426 3727544 complement(2257992..2260976) 1 NC_007503.1 identified by match to protein family HMM PF02369; Ig-like domain-containing protein 2260976 3727544 CHY_2528 Carboxydothermus hydrogenoformans Z-2901 Ig-like domain-containing protein YP_361321.1 2257992 R 246194 CDS YP_361322.1 78044211 3727328 complement(2261371..2262174) 1 NC_007503.1 hypothetical protein 2262174 3727328 CHY_2529 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361322.1 2261371 R 246194 CDS YP_361323.1 78044750 3727874 2261897..2262007 1 NC_007503.1 hypothetical protein 2262007 3727874 CHY_2530 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361323.1 2261897 D 246194 CDS YP_361324.1 78043596 3728749 2262368..2262649 1 NC_007503.1 hypothetical protein 2262649 3728749 CHY_2531 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361324.1 2262368 D 246194 CDS YP_361325.1 78044799 3727924 2262642..2263055 1 NC_007503.1 identified by similarity to SP:Q58324; match to protein family HMM PF01850; twitching motility protein PilT 2263055 3727924 CHY_2532 Carboxydothermus hydrogenoformans Z-2901 twitching motility protein PilT YP_361325.1 2262642 D 246194 CDS YP_361326.1 78044233 3727350 complement(2263102..2264118) 1 NC_007503.1 identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904; rod shape-determining protein Mbl 2264118 mbl 3727350 mbl Carboxydothermus hydrogenoformans Z-2901 rod shape-determining protein Mbl YP_361326.1 2263102 R 246194 CDS YP_361327.1 78043367 3728888 complement(2264279..2264533) 1 NC_007503.1 identified by similarity to SP:P15281; stage III sporulation protein D 2264533 3728888 CHY_2534 Carboxydothermus hydrogenoformans Z-2901 stage III sporulation protein D YP_361327.1 2264279 R 246194 CDS YP_361328.1 78044553 3727672 complement(2264611..2264940) 1 NC_007503.1 identified by similarity to SP:Q57591; match to protein family HMM PF01934; hypothetical protein 2264940 3727672 CHY_2535 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361328.1 2264611 R 246194 CDS YP_361329.1 78042724 3726935 complement(2264927..2265226) 1 NC_007503.1 identified by match to protein family HMM PF01909; nucleotidyltransferase 2265226 3726935 CHY_2536 Carboxydothermus hydrogenoformans Z-2901 nucleotidyltransferase YP_361329.1 2264927 R 246194 CDS YP_361330.1 78045142 3728268 complement(2265252..2265428) 1 NC_007503.1 hypothetical protein 2265428 3728268 CHY_2537 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361330.1 2265252 R 246194 CDS YP_361331.1 78043607 3728818 2265316..2265462 1 NC_007503.1 hypothetical protein 2265462 3728818 CHY_2538 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361331.1 2265316 D 246194 CDS YP_361332.1 78044329 3727446 complement(2265528..2265944) 1 NC_007503.1 identified by similarity to GB:AAM25727.1; match to protein family HMM PF01850; match to protein family HMM TIGR00305; twitching motility protein PilT 2265944 3727446 CHY_2539 Carboxydothermus hydrogenoformans Z-2901 twitching motility protein PilT YP_361332.1 2265528 R 246194 CDS YP_361333.1 78043973 3726208 complement(2265935..2266213) 1 NC_007503.1 identified by similarity to GB:AAM25728.1; match to protein family HMM PF02604; match to protein family HMM TIGR01552; prevent-host-death family protein 2266213 3726208 CHY_2540 Carboxydothermus hydrogenoformans Z-2901 prevent-host-death family protein YP_361333.1 2265935 R 246194 CDS YP_361334.1 78043203 3728567 complement(2266511..2267482) 1 NC_007503.1 identified by similarity to SP:P07372; match to protein family HMM TIGR02669; stage II sporulation protein D 2267482 3728567 CHY_2541 Carboxydothermus hydrogenoformans Z-2901 stage II sporulation protein D YP_361334.1 2266511 R 246194 CDS YP_361335.1 78043081 3726398 complement(2267596..2268855) 1 NC_007503.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2268855 murA 3726398 murA Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_361335.1 2267596 R 246194 CDS YP_361336.1 78043663 3726694 complement(2268870..2269448) 1 NC_007503.1 hypothetical protein 2269448 3726694 CHY_2543 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361336.1 2268870 R 246194 CDS YP_361337.1 78044330 3727447 complement(2269523..2269927) 1 NC_007503.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 2269927 atpC 3727447 atpC Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0F1 subunit epsilon YP_361337.1 2269523 R 246194 CDS YP_361338.1 78043094 3726372 complement(2269930..2271351) 1 NC_007503.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 2271351 atpD 3726372 atpD Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0F1 subunit beta YP_361338.1 2269930 R 246194 CDS YP_361339.1 78045137 3728263 complement(2271369..2272217) 1 NC_007503.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 2272217 atpG 3728263 atpG Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0F1 subunit gamma YP_361339.1 2271369 R 246194 CDS YP_361340.1 78044529 3727648 complement(2272237..2273742) 1 NC_007503.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2273742 atpA 3727648 atpA Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0F1 subunit alpha YP_361340.1 2272237 R 246194 CDS YP_361341.1 78043404 3728866 complement(2273771..2274304) 1 NC_007503.1 identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta 2274304 atpH 3728866 atpH Carboxydothermus hydrogenoformans Z-2901 ATP synthase F1 subunit delta YP_361341.1 2273771 R 246194 CDS YP_361342.1 78042703 3726953 complement(2274304..2274783) 1 NC_007503.1 identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144; ATP synthase F0 subunit B 2274783 atpF 3726953 atpF Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0 subunit B YP_361342.1 2274304 R 246194 CDS YP_361343.1 78043573 3726292 complement(2274839..2275087) 1 NC_007503.1 identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C 2275087 atpE 3726292 atpE Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0 subunit C YP_361343.1 2274839 R 246194 CDS YP_361344.1 78044762 3727886 complement(2275127..2275798) 1 NC_007503.1 identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A 2275798 atpB 3727886 atpB Carboxydothermus hydrogenoformans Z-2901 ATP synthase F0 subunit A YP_361344.1 2275127 R 246194 CDS YP_361345.1 78044150 3727266 complement(2275813..2276160) 1 NC_007503.1 hypothetical protein 2276160 3727266 CHY_2552 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361345.1 2275813 R 246194 CDS YP_361346.1 78042846 3727100 complement(2276162..2276380) 1 NC_007503.1 identified by similarity to PIR:B84120; hypothetical protein 2276380 3727100 CHY_2553 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361346.1 2276162 R 246194 CDS YP_361347.1 78042692 3726981 complement(2276480..2277622) 1 NC_007503.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; UDP-N-acetylglucosamine 2-epimerase 2277622 3726981 CHY_2554 Carboxydothermus hydrogenoformans Z-2901 UDP-N-acetylglucosamine 2-epimerase YP_361347.1 2276480 R 246194 CDS YP_361348.1 78043242 3728625 complement(2277709..2278017) 1 NC_007503.1 nucleotide pyrophosphohydrolase domain-containing protein 2278017 3728625 CHY_2555 Carboxydothermus hydrogenoformans Z-2901 nucleotide pyrophosphohydrolase domain-containing protein YP_361348.1 2277709 R 246194 CDS YP_361349.1 78045157 3728283 complement(2278021..2278533) 1 NC_007503.1 identified by match to protein family HMM PF00383; comE operon protein 2 2278533 3728283 CHY_2556 Carboxydothermus hydrogenoformans Z-2901 comE operon protein 2 YP_361349.1 2278021 R 246194 CDS YP_361350.1 78045069 3728195 complement(2278615..2279880) 1 NC_007503.1 identified by similarity to SP:P39148; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01212; match to protein family HMM PF01276; serine hydroxymethyltransferase 2279880 glyA 3728195 glyA Carboxydothermus hydrogenoformans Z-2901 serine hydroxymethyltransferase YP_361350.1 2278615 R 246194 CDS YP_361351.1 78043323 3728648 complement(2279882..2280361) 1 NC_007503.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 2280361 rpiB 3728648 rpiB Carboxydothermus hydrogenoformans Z-2901 ribose-5-phosphate isomerase B YP_361351.1 2279882 R 246194 CDS YP_361352.1 78042910 3727009 complement(2280339..2280818) 1 NC_007503.1 identified by match to protein family HMM PF01451; low molecular weight protein-tyrosine-phosphatase 2280818 3727009 CHY_2559 Carboxydothermus hydrogenoformans Z-2901 low molecular weight protein-tyrosine-phosphatase YP_361352.1 2280339 R 246194 CDS YP_361353.1 78043956 3726736 complement(2280829..2281371) 1 NC_007503.1 identified by match to protein family HMM PF02659; hypothetical protein 2281371 3726736 CHY_2560 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361353.1 2280829 R 246194 CDS YP_361354.1 78044541 3727660 complement(2281387..2282415) 1 NC_007503.1 identified by similarity to GB:AAM23449.1; match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 2282415 3727660 CHY_2561 Carboxydothermus hydrogenoformans Z-2901 Sua5/YciO/YrdC/YwlC family protein YP_361354.1 2281387 R 246194 CDS YP_361355.1 78043637 3726765 complement(2282606..2283463) 1 NC_007503.1 identified by similarity to GB:AAK64442.1; match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family modification methylase 2283463 3726765 CHY_2562 Carboxydothermus hydrogenoformans Z-2901 HemK family modification methylase YP_361355.1 2282606 R 246194 CDS YP_361356.1 78044074 3727190 complement(2283456..2284532) 1 NC_007503.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2284532 prfA 3727190 prfA Carboxydothermus hydrogenoformans Z-2901 peptide chain release factor 1 YP_361356.1 2283456 R 246194 CDS YP_361357.1 78043480 3728807 complement(2284532..2285398) 1 NC_007503.1 identified by match to protein family HMM PF07136; hypothetical protein 2285398 3728807 CHY_2564 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361357.1 2284532 R 246194 CDS YP_361358.1 78044735 3727858 complement(2285452..2285649) 1 NC_007503.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2285649 rpmE 3727858 rpmE Carboxydothermus hydrogenoformans Z-2901 50S ribosomal protein L31 YP_361358.1 2285452 R 246194 CDS YP_361359.1 78042954 3726816 complement(2285775..2287112) 1 NC_007503.1 identified by similarity to GB:AAM25603.1; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 2287112 3726816 CHY_2566 Carboxydothermus hydrogenoformans Z-2901 sensor histidine kinase YP_361359.1 2285775 R 246194 CDS YP_361360.1 78043342 3728531 complement(2287096..2287806) 1 NC_007503.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2287806 3728531 CHY_2567 Carboxydothermus hydrogenoformans Z-2901 DNA-binding response regulator YP_361360.1 2287096 R 246194 CDS YP_361361.1 78043096 3726374 complement(2287919..2288734) 1 NC_007503.1 identified by similarity to GB:AAM24033.1; hypothetical protein 2288734 3726374 CHY_2568 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361361.1 2287919 R 246194 CDS YP_361362.1 78044589 3727710 complement(2288843..2289676) 1 NC_007503.1 identified by similarity to SP:Q02114; match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 2289676 3727710 CHY_2569 Carboxydothermus hydrogenoformans Z-2901 N-acetylmuramoyl-L-alanine amidase YP_361362.1 2288843 R 246194 CDS YP_361363.1 78045149 3728275 complement(2289789..2289950) 1 NC_007503.1 identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase 2289950 3728275 CHY_2570 Carboxydothermus hydrogenoformans Z-2901 twin arginine-targeting protein translocase YP_361363.1 2289789 R 246194 CDS YP_361364.1 78043310 3728615 complement(2289952..2290527) 1 NC_007503.1 hypothetical protein 2290527 3728615 CHY_2571 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361364.1 2289952 R 246194 CDS YP_361365.1 78043986 3726221 complement(2290543..2291400) 1 NC_007503.1 identified by match to protein family HMM PF03916; molybdopterin oxidoreductase membrane subunit 2291400 3726221 CHY_2572 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase membrane subunit YP_361365.1 2290543 R 246194 CDS YP_361366.1 78042778 3726872 complement(2291413..2291952) 1 NC_007503.1 identified by match to protein family HMM PF00037; molybdopterin oxidoreductase, iron-sulfur binding subunit 2291952 3726872 CHY_2573 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, iron-sulfur binding subunit YP_361366.1 2291413 R 246194 CDS YP_361367.1 78044729 3727852 complement(2291945..2294116) 1 NC_007503.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01409; molybdopterin oxidoreductase, molybdopterin-binding subunit 2294116 3727852 CHY_2574 Carboxydothermus hydrogenoformans Z-2901 molybdopterin oxidoreductase, molybdopterin-binding subunit YP_361367.1 2291945 R 246194 CDS YP_361368.1 78042769 3726902 2294325..2295233 1 NC_007503.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2295233 3726902 CHY_2575 Carboxydothermus hydrogenoformans Z-2901 LysR family transcriptional regulator YP_361368.1 2294325 D 246194 CDS YP_361369.1 78044877 3728002 complement(2295230..2295733) 1 NC_007503.1 identified by similarity to SP:P31064; match to protein family HMM PF04143; hypothetical protein 2295733 3728002 CHY_2576 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361369.1 2295230 R 246194 CDS YP_361370.1 78043227 3728591 complement(2295739..2295960) 1 NC_007503.1 identified by similarity to SP:Q9X078; match to protein family HMM PF01206; hypothetical protein 2295960 3728591 CHY_2577 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361370.1 2295739 R 246194 CDS YP_361371.1 78043810 3726628 complement(2295961..2296554) 1 NC_007503.1 identified by similarity to GB:AAO35748.1; match to protein family HMM PF04143; hypothetical protein 2296554 3726628 CHY_2578 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361371.1 2295961 R 246194 CDS YP_361372.1 78042812 3726868 2296549..2296683 1 NC_007503.1 hypothetical protein 2296683 3726868 CHY_2579 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361372.1 2296549 D 246194 CDS YP_361373.1 78043544 3726730 complement(2296714..2298090) 1 NC_007503.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphoglucomutase/phosphomannomutase 2298090 3726730 CHY_2580 Carboxydothermus hydrogenoformans Z-2901 phosphoglucomutase/phosphomannomutase YP_361373.1 2296714 R 246194 CDS YP_361374.1 78043994 3726229 complement(2298093..2298830) 1 NC_007503.1 identified by similarity to PIR:E97087; match to protein family HMM PF04239; hypothetical protein 2298830 3726229 CHY_2581 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361374.1 2298093 R 246194 CDS YP_361375.1 78043028 3726443 complement(2299011..2299886) 1 NC_007503.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 2299886 galU 3726443 galU Carboxydothermus hydrogenoformans Z-2901 UTP-glucose-1-phosphate uridylyltransferase YP_361375.1 2299011 R 246194 CDS YP_361376.1 78042821 3726838 complement(2299952..2301001) 1 NC_007503.1 identified by similarity to SP:P72010; match to protein family HMM PF01761; glycerol-1-phosphate dehydrogenase 2301001 3726838 CHY_2583 Carboxydothermus hydrogenoformans Z-2901 glycerol-1-phosphate dehydrogenase YP_361376.1 2299952 R 246194 CDS YP_361377.1 78043840 3726581 complement(2301013..2301726) 1 NC_007503.1 identified by match to protein family HMM PF00483; nucleotidyl transferase 2301726 3726581 CHY_2584 Carboxydothermus hydrogenoformans Z-2901 nucleotidyl transferase YP_361377.1 2301013 R 246194 CDS YP_361378.1 78043207 3728571 complement(2301723..2302457) 1 NC_007503.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; WecB/TagA/CpsF family glycosyl transferase 2302457 3728571 CHY_2585 Carboxydothermus hydrogenoformans Z-2901 WecB/TagA/CpsF family glycosyl transferase YP_361378.1 2301723 R 246194 CDS YP_361379.1 78043895 3726518 complement(2302435..2304387) 1 NC_007503.1 spore germination protein 2304387 3726518 CHY_2586 Carboxydothermus hydrogenoformans Z-2901 spore germination protein YP_361379.1 2302435 R 246194 CDS YP_361380.1 78044684 3727806 complement(2304407..2305495) 1 NC_007503.1 identified by match to protein family HMM PF04464; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 2305495 3727806 CHY_2587 Carboxydothermus hydrogenoformans Z-2901 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase YP_361380.1 2304407 R 246194 CDS YP_361381.1 78042942 3727002 complement(2305562..2306608) 1 NC_007503.1 identified by similarity to SP:O34753; match to protein family HMM PF00953; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase 2306608 tagO 3727002 tagO Carboxydothermus hydrogenoformans Z-2901 undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase YP_361381.1 2305562 R 246194 CDS YP_361382.1 78044325 3727442 complement(2306691..2307125) 1 NC_007503.1 identified by similarity to SP:P32205; match to protein family HMM PF07977; match to protein family HMM TIGR01750; 3-hydroxyacyl-ACP dehydratase 2307125 fabZ 3727442 fabZ Carboxydothermus hydrogenoformans Z-2901 3-hydroxyacyl-ACP dehydratase YP_361382.1 2306691 R 246194 CDS YP_361383.1 78044968 3728093 complement(2307118..2308221) 1 NC_007503.1 identified by match to protein family HMM PF01522; polysaccharide deacetylase 2308221 3728093 CHY_2590 Carboxydothermus hydrogenoformans Z-2901 polysaccharide deacetylase YP_361383.1 2307118 R 246194 CDS YP_361384.1 78045104 3728230 complement(2308337..2309677) 1 NC_007503.1 identified by similarity to SP:Q02115; match to protein family HMM PF03816; match to protein family HMM TIGR00350; transcriptional regulator 2309677 3728230 CHY_2591 Carboxydothermus hydrogenoformans Z-2901 transcriptional regulator YP_361384.1 2308337 R 246194 CDS YP_361385.1 78043002 3726494 complement(2309888..2310343) 1 NC_007503.1 identified by similarity to OMNI:NTL03CP1354; hypothetical protein 2310343 3726494 CHY_2592 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361385.1 2309888 R 246194 CDS YP_361386.1 78043259 3728545 complement(2310367..2310462) 1 NC_007503.1 hypothetical protein 2310462 3728545 CHY_2593 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361386.1 2310367 R 246194 CDS YP_361387.1 78044034 3727149 2310476..2311444 1 NC_007503.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383; magnesium and cobalt transport protein CorA 2311444 corA 3727149 corA Carboxydothermus hydrogenoformans Z-2901 magnesium and cobalt transport protein CorA YP_361387.1 2310476 D 246194 CDS YP_361388.1 78043634 3726762 complement(2311594..2311752) 1 NC_007503.1 identified by match to protein family HMM PF00301; rubredoxin 2311752 3726762 CHY_2595 Carboxydothermus hydrogenoformans Z-2901 rubredoxin YP_361388.1 2311594 R 246194 CDS YP_361389.1 78044892 3728017 complement(2311775..2312899) 1 NC_007503.1 identified by similarity to SP:P42433; match to protein family HMM PF00070; match to protein family HMM PF01266; match to protein family HMM PF07992; nitrate reductase 2312899 3728017 CHY_2596 Carboxydothermus hydrogenoformans Z-2901 nitrate reductase YP_361389.1 2311775 R 246194 CDS YP_361390.1 78044637 3727758 complement(2313018..2313350) 1 NC_007503.1 identified by similarity to SP:P00267; match to protein family HMM PF00301; rubredoxin 2313350 3727758 CHY_2597 Carboxydothermus hydrogenoformans Z-2901 rubredoxin YP_361390.1 2313018 R 246194 CDS YP_361391.1 78042974 3726543 complement(2313446..2313967) 1 NC_007503.1 identified by match to protein family HMM PF02915; rubrerythrin 2313967 3726543 CHY_2598 Carboxydothermus hydrogenoformans Z-2901 rubrerythrin YP_361391.1 2313446 R 246194 CDS YP_361392.1 78043711 3726663 complement(2314212..2315717) 1 NC_007503.1 identified by similarity to GB:AAO34924.1; match to protein family HMM PF01476; LysM domain-containing protein 2315717 3726663 CHY_2599 Carboxydothermus hydrogenoformans Z-2901 LysM domain-containing protein YP_361392.1 2314212 R 246194 CDS YP_361393.1 78043756 3726282 2315840..2316394 1 NC_007503.1 identified by match to protein family HMM PF00188; SCP-like extracellular protein 2316394 3726282 CHY_2600 Carboxydothermus hydrogenoformans Z-2901 SCP-like extracellular protein YP_361393.1 2315840 D 246194 CDS YP_361394.1 78044054 3727169 2316382..2316528 1 NC_007503.1 hypothetical protein 2316528 3727169 CHY_2601 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361394.1 2316382 D 246194 CDS YP_361395.1 78043248 3728631 complement(2316604..2316918) 1 NC_007503.1 hypothetical protein 2316918 3728631 CHY_2602 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361395.1 2316604 R 246194 CDS YP_361396.1 78044833 3727958 2316922..2317245 1 NC_007503.1 identified by similarity to SP:Q9JWQ5; hypothetical protein 2317245 3727958 CHY_2603 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361396.1 2316922 D 246194 CDS YP_361397.1 78042625 3727111 complement(2317298..2317702) 1 NC_007503.1 identified by similarity to OMNI:NTL01TT2063; match to protein family HMM PF02915; hypothetical protein 2317702 3727111 CHY_2604 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361397.1 2317298 R 246194 CDS YP_361398.1 78043333 3728658 2318224..2318607 1 NC_007503.1 hypothetical protein 2318607 3728658 CHY_2605 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361398.1 2318224 D 246194 CDS YP_361399.1 78044402 3727520 2318702..2318872 1 NC_007503.1 hypothetical protein 2318872 3727520 CHY_2606 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361399.1 2318702 D 246194 CDS YP_361400.1 78045131 3728257 2318859..2319536 1 NC_007503.1 hypothetical protein 2319536 3728257 CHY_2607 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361400.1 2318859 D 246194 CDS YP_361401.1 78043153 3728516 complement(2319571..2320437) 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2320437 3728516 CHY_2608 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_361401.1 2319571 R 246194 CDS YP_361402.1 78043468 3728852 complement(2320496..2321362) 1 NC_007503.1 identified by match to protein family HMM PF00535; glycosyl transferase family protein 2321362 3728852 CHY_2609 Carboxydothermus hydrogenoformans Z-2901 glycosyl transferase family protein YP_361402.1 2320496 R 246194 CDS YP_361403.1 78042865 3727080 complement(2321381..2321668) 1 NC_007503.1 hypothetical protein 2321668 3727080 CHY_2610 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361403.1 2321381 R 246194 CDS YP_361404.1 78043550 3726775 complement(2321682..2322524) 1 NC_007503.1 YabG peptidase 2322524 3726775 CHY_2611 Carboxydothermus hydrogenoformans Z-2901 YabG peptidase YP_361404.1 2321682 R 246194 CDS YP_361405.1 78044269 3727386 complement(2322629..2323447) 1 NC_007503.1 hypothetical protein 2323447 3727386 CHY_2612 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361405.1 2322629 R 246194 CDS YP_361406.1 78045041 3728167 2323572..2324264 1 NC_007503.1 hypothetical protein 2324264 3728167 CHY_2613 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361406.1 2323572 D 246194 CDS YP_361407.1 78044969 3728094 complement(2324033..2324212) 1 NC_007503.1 hypothetical protein 2324212 3728094 CHY_2614 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361407.1 2324033 R 246194 CDS YP_361408.1 78043492 3726599 complement(2324317..2324808) 1 NC_007503.1 identified by similarity to GB:AAM24013.1; match to protein family HMM PF04308; hypothetical protein 2324808 3726599 CHY_2615 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361408.1 2324317 R 246194 CDS YP_361409.1 78043122 3728660 complement(2324990..2325865) 1 NC_007503.1 identified by similarity to SP:P37468; match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 2325865 ksgA 3728660 ksgA Carboxydothermus hydrogenoformans Z-2901 dimethyladenosine transferase YP_361409.1 2324990 R 246194 CDS YP_361410.1 78043890 3726513 complement(2325975..2326982) 1 NC_007503.1 identified by similarity to GB:AAM23416.1; match to protein family HMM PF03990; match to protein family HMM PF06725; match to protein family HMM PF07501; hypothetical protein 2326982 3726513 CHY_2617 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361410.1 2325975 R 246194 CDS YP_361411.1 78042723 3726934 2326997..2327257 1 NC_007503.1 hypothetical protein 2327257 3726934 CHY_2618 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361411.1 2326997 D 246194 CDS YP_361412.1 78044646 3727768 complement(2327286..2327810) 1 NC_007503.1 identified by similarity to SP:P13040; match to protein family HMM PF02572; match to protein family HMM TIGR00708; cob(I)alamin adenosyltransferase 2327810 cobO 3727768 cobO Carboxydothermus hydrogenoformans Z-2901 cob(I)alamin adenosyltransferase YP_361412.1 2327286 R 246194 CDS YP_361413.1 78044788 3727913 complement(2327874..2328638) 1 NC_007503.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 2328638 3727913 CHY_2620 Carboxydothermus hydrogenoformans Z-2901 TatD family hydrolase YP_361413.1 2327874 R 246194 CDS YP_361414.1 78044237 3727354 complement(2328664..2330625) 1 NC_007503.1 identified by similarity to SP:P23920; match to protein family HMM PF00133; match to protein family HMM PF01406; match to protein family HMM PF01588; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399; methionyl-tRNA synthetase 2330625 metS 3727354 metS Carboxydothermus hydrogenoformans Z-2901 methionyl-tRNA synthetase YP_361414.1 2328664 R 246194 CDS YP_361415.1 78043943 3726410 2330815..2331069 1 NC_007503.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 2331069 3726410 CHY_2622 Carboxydothermus hydrogenoformans Z-2901 AbrB family transcriptional regulator YP_361415.1 2330815 D 246194 CDS YP_361416.1 78043548 3726773 complement(2331066..2331857) 1 NC_007503.1 hypothetical protein 2331857 3726773 CHY_2623 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361416.1 2331066 R 246194 CDS YP_361417.1 78042803 3726859 complement(2331939..2332526) 1 NC_007503.1 identified by match to protein family HMM PF07719; hypothetical protein 2332526 3726859 CHY_2624 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361417.1 2331939 R 246194 CDS YP_361418.1 78044286 3727403 complement(2332728..2333372) 1 NC_007503.1 identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein 2333372 3727403 CHY_2625 Carboxydothermus hydrogenoformans Z-2901 M23/M37 peptidase domain-containing protein YP_361418.1 2332728 R 246194 CDS YP_361419.1 78042747 3726919 complement(2333468..2334046) 1 NC_007503.1 hypothetical protein 2334046 3726919 CHY_2626 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361419.1 2333468 R 246194 CDS YP_361420.1 78044483 3727602 complement(2334103..2335479) 1 NC_007503.1 identified by match to protein family HMM PF04055; radical SAM domain-containing protein 2335479 3727602 CHY_2627 Carboxydothermus hydrogenoformans Z-2901 radical SAM domain-containing protein YP_361420.1 2334103 R 246194 CDS YP_361421.1 78044970 3728095 complement(2335545..2335676) 1 NC_007503.1 hypothetical protein 2335676 3728095 CHY_2628 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361421.1 2335545 R 246194 CDS YP_361422.1 78043630 3726758 2335940..2336227 1 NC_007503.1 identified by similarity to PIR:C71168; hypothetical protein 2336227 3726758 CHY_2629 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361422.1 2335940 D 246194 CDS YP_361423.1 78044394 3727512 complement(2336236..2336340) 1 NC_007503.1 hypothetical protein 2336340 3727512 CHY_2630 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361423.1 2336236 R 246194 CDS YP_361424.1 78045029 3728154 complement(2336504..2336701) 1 NC_007503.1 hypothetical protein 2336701 3728154 CHY_2632 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361424.1 2336504 R 246194 CDS YP_361425.1 78043148 3728511 2336734..2336934 1 NC_007503.1 hypothetical protein 2336934 3728511 CHY_2633 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361425.1 2336734 D 246194 CDS YP_361426.1 78043155 3728518 complement(2336912..2337214) 1 NC_007503.1 hypothetical protein 2337214 3728518 CHY_2634 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361426.1 2336912 R 246194 CDS YP_361427.1 78043560 3726786 complement(2337313..2337414) 1 NC_007503.1 hypothetical protein 2337414 3726786 CHY_2635 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361427.1 2337313 R 246194 CDS YP_361428.1 78044370 3727488 2337351..2337500 1 NC_007503.1 hypothetical protein 2337500 3727488 CHY_2636 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361428.1 2337351 D 246194 CDS YP_361429.1 78044133 3727249 complement(2337526..2337618) 1 NC_007503.1 hypothetical protein 2337618 3727249 CHY_2637 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361429.1 2337526 R 246194 CDS YP_361430.1 78044883 3728008 complement(2337713..2337829) 1 NC_007503.1 hypothetical protein 2337829 3728008 CHY_2638 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361430.1 2337713 R 246194 CDS YP_361431.1 78042647 3726311 complement(2337905..2338075) 1 NC_007503.1 identified by similarity to GB:AAM25258.1; hypothetical protein 2338075 3726311 CHY_2639 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361431.1 2337905 R 246194 CDS YP_361432.1 78043346 3728535 complement(2338110..2339387) 1 NC_007503.1 identified by similarity to SP:P05096; match to protein family HMM PF01751; DNA primase, internal deletion 2339387 3728535 CHY_2640 Carboxydothermus hydrogenoformans Z-2901 DNA primase, internal deletion YP_361432.1 2338110 R 246194 CDS YP_361433.1 78044213 3727330 2339666..2340235 1 NC_007503.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome.; ISChy3, orf1 2340235 3727330 CHY_1250 Carboxydothermus hydrogenoformans Z-2901 ISChy3, orf1 YP_361433.1 2339666 D 246194 CDS YP_361434.1 78044774 3727898 2340315..2341661 1 NC_007503.1 identified by similarity to SP:P18416; match to protein family HMM PF00665; ISChy3, transposase 2341661 3727898 CHY_1251 Carboxydothermus hydrogenoformans Z-2901 ISChy3, transposase YP_361434.1 2340315 D 246194 CDS YP_361435.1 78043428 3728793 2341664..2342467 1 NC_007503.1 This is one of three genes centered around a predicted transposase gene. There are two copies of the ISChy3 element in this genome.; ISChy3, orf3 2342467 3728793 CHY_1252 Carboxydothermus hydrogenoformans Z-2901 ISChy3, orf3 YP_361435.1 2341664 D 246194 CDS YP_361436.1 78044860 3727985 complement(2342561..2342974) 1 NC_007503.1 identified by similarity to GB:BAC18734.1; hypothetical protein 2342974 3727985 CHY_2644 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361436.1 2342561 R 246194 CDS YP_361437.1 78042685 3726974 complement(2343134..2343256) 1 NC_007503.1 hypothetical protein 2343256 3726974 CHY_2645 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361437.1 2343134 R 246194 CDS YP_361438.1 78043336 3728525 complement(2343260..2343568) 1 NC_007503.1 hypothetical protein 2343568 3728525 CHY_2646 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361438.1 2343260 R 246194 CDS YP_361439.1 78044487 3727606 complement(2344250..2344336) 1 NC_007503.1 hypothetical protein 2344336 3727606 CHY_2647 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361439.1 2344250 R 246194 CDS YP_361440.1 78045169 3728295 complement(2344982..2345134) 1 NC_007503.1 hypothetical protein 2345134 3728295 CHY_2648 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361440.1 2344982 R 246194 CDS YP_361441.1 78043848 3726589 complement(2345149..2347068) 1 NC_007503.1 hypothetical protein 2347068 3726589 CHY_2649 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361441.1 2345149 R 246194 CDS YP_361442.1 78042753 3726925 complement(2347803..2348612) 1 NC_007503.1 hypothetical protein 2348612 3726925 CHY_2650 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361442.1 2347803 R 246194 CDS YP_361443.1 78044476 3727595 complement(2348822..2350852) 1 NC_007503.1 identified by similarity to OMNI:NTL02MA2298; match to protein family HMM TIGR02653; hypothetical protein 2350852 3727595 CHY_2651 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361443.1 2348822 R 246194 CDS YP_361444.1 78043267 3728553 complement(2350870..2353428) 1 NC_007503.1 identified by similarity to OMNI:NTL02MA2299; hypothetical protein 2353428 3728553 CHY_2652 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361444.1 2350870 R 246194 CDS YP_361445.1 78045163 3728289 complement(2353447..2357070) 1 NC_007503.1 identified by similarity to SP:P25239; restriction enzyme 2357070 3728289 CHY_2653 Carboxydothermus hydrogenoformans Z-2901 restriction enzyme YP_361445.1 2353447 R 246194 CDS YP_361446.1 78043274 3728560 complement(2357097..2360660) 1 NC_007503.1 identified by similarity to GB:AAM05760.1; hypothetical protein 2360660 3728560 CHY_2654 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361446.1 2357097 R 246194 CDS YP_361447.1 78043641 3726769 complement(2360685..2361269) 1 NC_007503.1 identified by similarity to GB:AAM05761.1; hypothetical protein 2361269 3726769 CHY_2655 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361447.1 2360685 R 246194 CDS YP_361448.1 78044585 3727706 complement(2361301..2361903) 1 NC_007503.1 identified by similarity to GB:AAL23316.1; hypothetical protein 2361903 3727706 CHY_2656 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361448.1 2361301 R 246194 CDS YP_361449.1 78044737 3727860 complement(2361978..2362331) 1 NC_007503.1 hypothetical protein 2362331 3727860 CHY_2657 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361449.1 2361978 R 246194 CDS YP_361450.1 78043873 3726692 complement(2362860..2362970) 1 NC_007503.1 hypothetical protein 2362970 3726692 CHY_2658 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361450.1 2362860 R 246194 CDS YP_361451.1 78043576 3726295 complement(2363461..2363829) 1 NC_007503.1 hypothetical protein 2363829 3726295 CHY_2659 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361451.1 2363461 R 246194 CDS YP_361452.1 78043964 3726744 2364692..2365672 1 NC_007503.1 identified by similarity to OMNI:NTL01MT00334; hypothetical protein 2365672 3726744 CHY_2660 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361452.1 2364692 D 246194 CDS YP_361453.1 78045147 3728273 complement(2365765..2366004) 1 NC_007503.1 hypothetical protein 2366004 3728273 CHY_2661 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361453.1 2365765 R 246194 CDS YP_361454.1 78042815 3726832 complement(2366132..2366236) 1 NC_007503.1 hypothetical protein 2366236 3726832 CHY_2662 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361454.1 2366132 R 246194 CDS YP_361455.1 78043293 3728736 complement(2366376..2366492) 1 NC_007503.1 hypothetical protein 2366492 3728736 CHY_2663 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361455.1 2366376 R 246194 CDS YP_361456.1 78043985 3726220 complement(2366938..2367876) 1 NC_007503.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899; phage integrase site specific recombinase 2367876 3726220 CHY_2664 Carboxydothermus hydrogenoformans Z-2901 phage integrase site specific recombinase YP_361456.1 2366938 R 246194 CDS YP_361457.1 78044891 3728016 complement(2368265..2368735) 1 NC_007503.1 identified by similarity to OMNI:NTL01MK0527; hypothetical protein 2368735 3728016 CHY_2668 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361457.1 2368265 R 246194 CDS YP_361458.1 78042855 3727070 complement(2368735..2369592) 1 NC_007503.1 identified by similarity to SP:P28821; match to protein family HMM PF01063; aminodeoxychorismate lyase 2369592 pabC 3727070 pabC Carboxydothermus hydrogenoformans Z-2901 aminodeoxychorismate lyase YP_361458.1 2368735 R 246194 CDS YP_361459.1 78043728 3728473 complement(2369595..2370878) 1 NC_007503.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 2370878 purA 3728473 purA Carboxydothermus hydrogenoformans Z-2901 adenylosuccinate synthetase YP_361459.1 2369595 R 246194 CDS YP_361460.1 78044144 3727260 complement(2370893..2372278) 1 NC_007503.1 identified by similarity to GB:AAM25816.1; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; hypothetical protein 2372278 3727260 CHY_2671 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361460.1 2370893 R 246194 CDS YP_361461.1 78044851 3727976 complement(2372381..2372584) 1 NC_007503.1 identified by similarity to SP:P24282; sigma-K processing regulatory protein BofA 2372584 3727976 CHY_2672 Carboxydothermus hydrogenoformans Z-2901 sigma-K processing regulatory protein BofA YP_361461.1 2372381 R 246194 CDS YP_361462.1 78042767 3726900 complement(2372626..2373225) 1 NC_007503.1 identified by match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR 2373225 recR 3726900 recR Carboxydothermus hydrogenoformans Z-2901 recombination protein RecR YP_361462.1 2372626 R 246194 CDS YP_361463.1 78043175 3728694 complement(2373241..2373570) 1 NC_007503.1 identified by similarity to SP:P24281; match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 2373570 3728694 CHY_2674 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361463.1 2373241 R 246194 CDS YP_361464.1 78043423 3728788 complement(2373573..2375108) 1 NC_007503.1 identified by similarity to SP:P09122; match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunit gamma and tau 2375108 3728788 CHY_2675 Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit gamma and tau YP_361464.1 2373573 R 246194 CDS YP_361465.1 78044372 3727490 2375204..2375485 1 NC_007503.1 identified by similarity to GB:AAP27678.1; match to protein family HMM PF04456; hypothetical protein 2375485 3727490 CHY_2676 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361465.1 2375204 D 246194 CDS YP_361466.1 78043851 3726592 complement(2375478..2375675) 1 NC_007503.1 identified by similarity to SP:P54942; hypothetical protein 2375675 3726592 CHY_2677 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361466.1 2375478 R 246194 CDS YP_361467.1 78044550 3727669 complement(2375694..2376236) 1 NC_007503.1 identified by similarity to SP:P40881; match to protein family HMM PF00132; carbonic anhydrase 2376236 3727669 CHY_2678 Carboxydothermus hydrogenoformans Z-2901 carbonic anhydrase YP_361467.1 2375694 R 246194 CDS YP_361468.1 78043781 3726637 complement(2376975..2377436) 1 NC_007503.1 identified by similarity to SP:P30134; match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase 2377436 3726637 CHY_2682 Carboxydothermus hydrogenoformans Z-2901 cytidine/deoxycytidylate deaminase YP_361468.1 2376975 R 246194 CDS YP_361469.1 78044026 3727141 complement(2377578..2378780) 1 NC_007503.1 identified by similarity to PIR:T44655; match to protein family HMM PF01053; O-acetylhomoserine/O-acetylserine sulfhydrylase 2378780 3727141 CHY_2684 Carboxydothermus hydrogenoformans Z-2901 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_361469.1 2377578 R 246194 CDS YP_361470.1 78044678 3727800 complement(2378796..2379026) 1 NC_007503.1 identified by similarity to SP:O29697; hypothetical protein 2379026 3727800 CHY_2685 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361470.1 2378796 R 246194 CDS YP_361471.1 78044780 3727904 complement(2379013..2379921) 1 NC_007503.1 identified by similarity to SP:P26476; match to protein family HMM PF00037; match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite reductase, iron-sulfur binding subunit 2379921 3727904 CHY_2686 Carboxydothermus hydrogenoformans Z-2901 sulfite reductase, iron-sulfur binding subunit YP_361471.1 2379013 R 246194 CDS YP_361472.1 78043019 3726472 complement(2380289..2381095) 1 NC_007503.1 identified by match to protein family HMM PF00899; match to protein family HMM PF05237; thiazole biosynthesis adenylyltransferase ThiF 2381095 3726472 CHY_2687 Carboxydothermus hydrogenoformans Z-2901 thiazole biosynthesis adenylyltransferase ThiF YP_361472.1 2380289 R 246194 CDS YP_361473.1 78043918 3726346 complement(2381082..2381300) 1 NC_007503.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 2381300 thiS3 3726346 thiS3 Carboxydothermus hydrogenoformans Z-2901 thiamine biosynthesis protein ThiS YP_361473.1 2381082 R 246194 CDS YP_361474.1 78044078 3727194 complement(2381320..2382465) 1 NC_007503.1 identified by similarity to SP:O66036; match to protein family HMM PF01747; match to protein family HMM TIGR00339; sulfate adenylyltransferase 2382465 saT 3727194 saT Carboxydothermus hydrogenoformans Z-2901 sulfate adenylyltransferase YP_361474.1 2381320 R 246194 CDS YP_361475.1 78044337 3727454 complement(2382468..2382737) 1 NC_007503.1 identified by similarity to GP:443816; match to protein family HMM PF00037; adenylylsulfate reductase 2382737 aprB 3727454 aprB Carboxydothermus hydrogenoformans Z-2901 adenylylsulfate reductase YP_361475.1 2382468 R 246194 CDS YP_361476.1 78044665 3727787 complement(2382706..2384304) 1 NC_007503.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 2384304 3727787 CHY_2691 Carboxydothermus hydrogenoformans Z-2901 adenylylsulfate reductase subunit alpha YP_361476.1 2382706 R 246194 CDS YP_361477.1 78042660 3728485 complement(2384320..2385066) 1 NC_007503.1 identified by match to protein family HMM PF01925; hypothetical protein 2385066 3728485 CHY_2692 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361477.1 2384320 R 246194 CDS YP_361478.1 78044915 3728040 complement(2385116..2385709) 1 NC_007503.1 identified by similarity to GP:28270951; match to protein family HMM PF01583; match to protein family HMM TIGR00455; adenylylsulfate kinase 2385709 cysC 3728040 cysC Carboxydothermus hydrogenoformans Z-2901 adenylylsulfate kinase YP_361478.1 2385116 R 246194 CDS YP_361479.1 78043693 3726256 complement(2386430..2387704) 1 NC_007503.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2387704 serS 3726256 serS Carboxydothermus hydrogenoformans Z-2901 seryl-tRNA synthetase YP_361479.1 2386430 R 246194 CDS YP_361480.1 78044181 3727297 complement(2387794..2389371) 1 NC_007503.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2389371 serA 3727297 serA Carboxydothermus hydrogenoformans Z-2901 D-3-phosphoglycerate dehydrogenase YP_361480.1 2387794 R 246194 CDS YP_361481.1 78044898 3728023 complement(2389371..2390519) 1 NC_007503.1 identified by similarity to SP:P16421; match to protein family HMM PF00266; match to protein family HMM PF01053; match to protein family HMM PF01212; hydrogenase small subunit 2390519 3728023 CHY_2699 Carboxydothermus hydrogenoformans Z-2901 hydrogenase small subunit YP_361481.1 2389371 R 246194 CDS YP_361482.1 78043902 3726525 complement(2390550..2390714) 1 NC_007503.1 hypothetical protein 2390714 3726525 CHY_2700 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361482.1 2390550 R 246194 CDS YP_361483.1 78043145 3728508 2390720..2390890 1 NC_007503.1 hypothetical protein 2390890 3728508 CHY_2701 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361483.1 2390720 D 246194 CDS YP_361484.1 78042673 3728499 complement(2391000..2391575) 1 NC_007503.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 2391575 3728499 CHY_2702 Carboxydothermus hydrogenoformans Z-2901 glutamine amidotransferase subunit PdxT YP_361484.1 2391000 R 246194 CDS YP_361485.1 78044425 3727543 complement(2391628..2392512) 1 NC_007503.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 2392512 3727543 CHY_2703 Carboxydothermus hydrogenoformans Z-2901 pyridoxal biosynthesis lyase PdxS YP_361485.1 2391628 R 246194 CDS YP_361486.1 78045002 3728127 complement(2392587..2395025) 1 NC_007503.1 identified by match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 2395025 gyrA 3728127 gyrA Carboxydothermus hydrogenoformans Z-2901 DNA gyrase subunit A YP_361486.1 2392587 R 246194 CDS YP_361487.1 78043837 3726578 complement(2395050..2396957) 1 NC_007503.1 identified by match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 2396957 gyrB 3726578 gyrB Carboxydothermus hydrogenoformans Z-2901 DNA gyrase subunit B YP_361487.1 2395050 R 246194 CDS YP_361488.1 78043025 3726440 complement(2397048..2397314) 1 NC_007503.1 identified by similarity to GB:BAB79711.1; hypothetical protein 2397314 3726440 CHY_2706 Carboxydothermus hydrogenoformans Z-2901 hypothetical protein YP_361488.1 2397048 R 246194 CDS YP_361489.1 78043999 3726234 complement(2397325..2398386) 1 NC_007503.1 identified by similarity to SP:P29232; match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA recombination/replication protein RecF 2398386 recF 3726234 recF Carboxydothermus hydrogenoformans Z-2901 DNA recombination/replication protein RecF YP_361489.1 2397325 R 246194 CDS YP_361490.1 78044748 3727872 complement(2398388..2398609) 1 NC_007503.1 identified by similarity to PIR:C96900; match to protein family HMM PF01479; S4 domain-containing protein 2398609 3727872 CHY_2708 Carboxydothermus hydrogenoformans Z-2901 S4 domain-containing protein YP_361490.1 2398388 R 246194 CDS YP_361491.1 78043484 3728811 complement(2398618..2399733) 1 NC_007503.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 2399733 dnaN 3728811 dnaN Carboxydothermus hydrogenoformans Z-2901 DNA polymerase III subunit beta YP_361491.1 2398618 R 246194 CDS YP_361492.1 78042923 3727022 complement(2399937..2401301) 1 NC_007503.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 2401301 dnaA 3727022 dnaA Carboxydothermus hydrogenoformans Z-2901 chromosome replication initiator DnaA YP_361492.1 2399937 R 246194 CDS