-- dump date   	20140619_025023
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
413404000001	SEQ_END	SEQ_END	NC_008610.1	1160782	1160782	DR	NC_008610.1; contig end	1160782..1160782	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	<NULL_VALUE>
YP_903276.1	CDS	Rmag_0001	NC_008610.1	39	1331	D	KEGG: cbu:CBU_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA	39..1331	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555497
YP_903277.1	CDS	Rmag_0002	NC_008610.1	1543	2646	D	KEGG: mfa:Mfla_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III, beta subunit	1543..2646	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555498
YP_903278.1	CDS	Rmag_0003	NC_008610.1	2946	5354	D	KEGG: tcx:Tcr_0012 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B	2946..5354	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555499
YP_903279.1	CDS	Rmag_0004	NC_008610.1	5385	6272	D	PFAM: phosphoribulokinase/uridine kinase; KEGG: tbd:Tbd_2447 phosphoribulokinase; phosphoribulokinase	5385..6272	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555500
YP_903280.1	CDS	leuS	NC_008610.1	6904	9354	R	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase	complement(6904..9354)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555501
YP_903281.1	CDS	Rmag_0006	NC_008610.1	9387	10325	R	TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: noc:Noc_2822 dihydroorotate dehydrogenase 1; dihydroorotate oxidase B, catalytic subunit	complement(9387..10325)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555333
YP_903282.1	CDS	Rmag_0007	NC_008610.1	10365	11006	D	TIGRFAM: dethiobiotin synthase; KEGG: tcx:Tcr_0261 dethiobiotin synthase; dethiobiotin synthase	10365..11006	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555334
YP_903283.1	CDS	Rmag_0008	NC_008610.1	11289	11918	R	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: hch:HCH_05897 glutathione S-transferase; glutathione S-transferase domain-containing protein	complement(11289..11918)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555335
YP_903284.1	CDS	Rmag_0009	NC_008610.1	11997	12860	R	KEGG: lpf:lpl2631 ubiquinol-cytochrome c reductase cytochrome c1 subunit; ubiquinol-cytochrome c reductase cytochrome c1 subunit	complement(11997..12860)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555336
YP_903285.1	CDS	Rmag_0010	NC_008610.1	12864	14087	R	PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: tbd:Tbd_1832 cytochrome b subunit of cytochrome bc1; cytochrome b/b6 domain-containing protein	complement(12864..14087)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555337
YP_903286.1	CDS	Rmag_0011	NC_008610.1	14101	14697	R	KEGG: noc:Noc_0299 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit	complement(14101..14697)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555338
YP_903287.1	CDS	Rmag_0012	NC_008610.1	14802	15107	R	hypothetical protein	complement(14802..15107)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555339
YP_903288.1	CDS	Rmag_0013	NC_008610.1	15160	17838	D	TIGRFAM: preprotein translocase, SecA subunit; PFAM: helicase domain protein; SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: vfi:VF2193 protein translocase subunit SecA; protein translocase subunit secA	15160..17838	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555340
YP_903289.1	CDS	anmK	NC_008610.1	17831	18889	D	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase	17831..18889	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555341
YP_903290.1	CDS	Rmag_0015	NC_008610.1	18879	19913	D	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase	18879..19913	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555342
YP_903291.1	CDS	Rmag_0016	NC_008610.1	20251	21153	R	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: son:SO3533 riboflavin biosynthesis protein RibF; FMN adenylyltransferase / riboflavin kinase	complement(20251..21153)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555343
YP_903292.1	CDS	Rmag_0018	NC_008610.1	22172	23227	R	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase	complement(22172..23227)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555344
YP_903293.1	CDS	Rmag_0019	NC_008610.1	23227	24063	R	KEGG: noc:Noc_2702 hypothetical protein; hypothetical protein	complement(23227..24063)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555345
YP_903294.1	CDS	Rmag_0020	NC_008610.1	24091	25278	R	PFAM: aminotransferase, class I and II; KEGG: hch:HCH_01778 aspartate/tyrosine/aromatic aminotransferase; aminotransferase	complement(24091..25278)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555346
YP_903295.1	CDS	Rmag_0021	NC_008610.1	25334	25639	R	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: tbd:Tbd_2152 peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase, FKBP-type	complement(25334..25639)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555347
YP_903296.1	CDS	Rmag_0022	NC_008610.1	25650	26423	R	KEGG: pha:PSHAa0339 hypothetical protein; hypothetical protein	complement(25650..26423)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555348
YP_903297.1	CDS	Rmag_0023	NC_008610.1	26456	27334	R	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase	complement(26456..27334)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555349
YP_903298.1	CDS	Rmag_0024	NC_008610.1	27845	28963	R	PFAM: peptidase M23B; KEGG: pae:PA0667 hypothetical protein; peptidase M23B	complement(27845..28963)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555350
YP_903299.1	CDS	Rmag_0025	NC_008610.1	28956	30107	R	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase	complement(28956..30107)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555351
YP_903300.1	CDS	Rmag_0026	NC_008610.1	30104	30904	R	PFAM: phosphatidate cytidylyltransferase; KEGG: cps:CPS_1558 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase	complement(30104..30904)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555352
YP_903301.1	CDS	Rmag_0027	NC_008610.1	30898	31644	R	KEGG: vvy:VV2553 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase	complement(30898..31644)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554914
YP_903302.1	CDS	Rmag_0028	NC_008610.1	34314	35081	D	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF	34314..35081	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554915
YP_903303.1	CDS	Rmag_0029	NC_008610.1	35150	35680	D	KEGG: neu:NE1011 putative transmembrane protein; putative transmembrane protein	35150..35680	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554916
YP_903304.1	CDS	Rmag_0030	NC_008610.1	35687	36586	D	converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase	35687..36586	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554917
YP_903305.1	CDS	Rmag_0031	NC_008610.1	36587	36778	D	hypothetical protein	36587..36778	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554918
YP_903306.1	CDS	Rmag_0032	NC_008610.1	37140	38111	R	PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly; cytochrome oxidase assembly	complement(37140..38111)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554919
YP_903307.1	CDS	Rmag_0033	NC_008610.1	38205	39029	R	KEGG: cvi:CV3790 hypothetical protein; hypothetical protein	complement(38205..39029)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554920
YP_903308.1	CDS	Rmag_0034	NC_008610.1	39283	40350	D	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pha:PSHAa2872 cytochrome c oxidase, subunit II; cytochrome-c oxidase	39283..40350	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554921
YP_903309.1	CDS	Rmag_0035	NC_008610.1	40373	41989	D	PFAM: cytochrome c oxidase, subunit I; KEGG: pae:PA0106 cytochrome c oxidase, subunit I; cytochrome-c oxidase	40373..41989	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554922
YP_903310.1	CDS	Rmag_0036	NC_008610.1	42080	42613	D	PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: mca:MCA0882 cytochrome c oxidase assembly protein, putative; cytochrome c oxidase assembly protein CtaG/Cox11	42080..42613	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554923
YP_903311.1	CDS	Rmag_0037	NC_008610.1	42631	43515	D	PFAM: cytochrome c oxidase, subunit III; KEGG: hch:HCH_00049 cytochrome-c oxidase, subnunit III; cytochrome c oxidase, subunit III	42631..43515	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554924
YP_903312.1	CDS	Rmag_0038	NC_008610.1	43758	44504	D	KEGG: mca:MCA0131 hypothetical protein; hypothetical protein	43758..44504	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554925
YP_903313.1	CDS	Rmag_0039	NC_008610.1	44618	46036	D	CcoN; FixN; cbb3-type cytochrome c oxidase subunit I	44618..46036	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554926
YP_903314.1	CDS	Rmag_0040	NC_008610.1	46050	46781	D	CcoO; FixO; cbb3-type cytochrome c oxidase subunit II	46050..46781	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554927
YP_903315.1	CDS	Rmag_0041	NC_008610.1	46945	47847	D	KEGG: tcx:Tcr_1963 cytochrome c oxidase, cbb3-type, subunit III; cytochrome c oxidase, cbb3-type, subunit III	46945..47847	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554928
YP_903316.1	CDS	Rmag_0042	NC_008610.1	49389	49970	R	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pae:PA2614 periplasmic chaperone LolA; outer membrane lipoprotein carrier protein LolA	complement(49389..49970)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554929
YP_903317.1	CDS	Rmag_0043	NC_008610.1	49963	52230	R	PFAM: cell divisionFtsK/SpoIIIE; KEGG: sde:Sde_1693 cell division protein FtsK; DNA translocase FtsK	complement(49963..52230)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554930
YP_903318.1	CDS	Rmag_0044	NC_008610.1	52279	53223	D	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_0763 thioredoxin reductase; thioredoxin reductase	52279..53223	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554931
YP_903319.1	CDS	pyrB	NC_008610.1	54174	55136	R	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit	complement(54174..55136)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554932
YP_903320.1	CDS	Rmag_0046	NC_008610.1	55117	55545	R	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: cbu:CBU_2094 putative Holliday junction resolvase; Holliday junction resolvase YqgF	complement(55117..55545)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554808
YP_903321.1	CDS	Rmag_0047	NC_008610.1	55542	56726	R	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: sat:SYN_02632 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase	complement(55542..56726)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554809
YP_903322.1	CDS	Rmag_0048	NC_008610.1	56739	57665	D	PFAM: ApbE family lipoprotein; KEGG: sde:Sde_1803 thiamine biosynthesis lipoprotein; ApbE family lipoprotein	56739..57665	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554810
YP_903323.1	CDS	Rmag_0050	NC_008610.1	58950	59342	D	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: lpn:lpg0512 CrcB protein, camphor resistance; camphor resistance protein CrcB	58950..59342	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554811
YP_903324.1	CDS	Rmag_0051	NC_008610.1	59339	60301	R	KEGG: tcx:Tcr_1825 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; glutathione synthase	complement(59339..60301)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554812
YP_903325.1	CDS	Rmag_0052	NC_008610.1	60518	60982	D	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein	60518..60982	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554813
YP_903326.1	CDS	Rmag_0053	NC_008610.1	61014	62489	D	KEGG: mca:MCA1316 N utilization substance protein A; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; NusA antitermination factor	61014..62489	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554814
YP_903327.1	CDS	infB	NC_008610.1	62546	64993	D	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2	62546..64993	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554815
YP_903328.1	CDS	Rmag_0055	NC_008610.1	65011	65349	D	PFAM: ribosome-binding factor A; KEGG: lpp:lpp2819 ribosome-binding factor A; ribosome-binding factor A	65011..65349	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554816
YP_903329.1	CDS	Rmag_0056	NC_008610.1	65374	66282	D	KEGG: pmu:PM0756 tRNA pseudouridine 55 synthase; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B	65374..66282	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554817
YP_903330.1	CDS	Rmag_0057	NC_008610.1	66845	68116	D	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase	66845..68116	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554818
YP_903331.1	CDS	Rmag_0058	NC_008610.1	68472	69230	R	KEGG: neu:NE1008 hypothetical protein; periplasmic or secreted lipoprotein-like	complement(68472..69230)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554819
YP_903332.1	CDS	Rmag_0059	NC_008610.1	69598	70428	D	TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aci:ACIAD1130 putative methyltransferase; hypothetical protein	69598..70428	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554820
YP_903333.1	CDS	Rmag_0061	NC_008610.1	70723	71328	R	KEGG: cbu:CBU_0152 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase	complement(70723..71328)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554821
YP_903334.1	CDS	Rmag_0062	NC_008610.1	71651	73636	D	KEGG: tcx:Tcr_0244 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; transketolase	71651..73636	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554822
YP_903335.1	CDS	Rmag_0063	NC_008610.1	73745	74740	D	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: tbd:Tbd_0160 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase	73745..74740	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554823
YP_903336.1	CDS	pgk	NC_008610.1	75162	76337	D	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase	75162..76337	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554824
YP_903337.1	CDS	Rmag_0066	NC_008610.1	76330	77772	D	PFAM: pyruvate kinase; KEGG: vpa:VP2039 pyruvate kinase II; pyruvate kinase	76330..77772	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554825
YP_903338.1	CDS	Rmag_0067	NC_008610.1	77856	78917	D	KEGG: noc:Noc_2804 fructose-bisphosphate aldolase, class II, calvin cycle subtype; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase	77856..78917	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554826
YP_903339.1	CDS	Rmag_0068	NC_008610.1	78981	80855	D	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA	78981..80855	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554827
YP_903340.1	CDS	Rmag_0069	NC_008610.1	80891	81463	D	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mfa:Mfla_2754 methyltransferase GidB; methyltransferase GidB	80891..81463	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554692
YP_903341.1	CDS	Rmag_0070	NC_008610.1	81460	82260	D	KEGG: sde:Sde_1913 hypothetical protein; hypothetical protein	81460..82260	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554693
YP_903342.1	CDS	Rmag_0071	NC_008610.1	82267	83037	D	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rso:RSc1787 putative deoxyribonuclease; TatD family hydrolase	82267..83037	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554694
YP_903343.1	CDS	Rmag_0072	NC_008610.1	83034	83945	D	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pmu:PM0992 ribosomal large subunit pseudouridine synthase C; ribosomal large subunit pseudouridine synthase C	83034..83945	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554695
YP_903344.1	CDS	Rmag_0073	NC_008610.1	83993	84814	D	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: vch:VC0094 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate octaprenyltransferase	83993..84814	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554696
YP_903345.1	CDS	dapD	NC_008610.1	85474	86289	R	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	complement(85474..86289)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554697
YP_903346.1	CDS	Rmag_0075	NC_008610.1	86449	87843	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tcx:Tcr_1962 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	86449..87843	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554698
YP_903347.1	CDS	Rmag_0076	NC_008610.1	87843	88322	D	KEGG: tcx:Tcr_1961 hypothetical protein; hypothetical protein	87843..88322	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554699
YP_903348.1	CDS	Rmag_0077	NC_008610.1	90190	90891	R	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0829 high-affinity zinc uptake system ATP-binding protein ZnuC; ABC transporter related	complement(90190..90891)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554700
YP_903349.1	CDS	Rmag_0078	NC_008610.1	90999	93719	D	KEGG: hch:HCH_06350 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I	90999..93719	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554701
YP_903350.1	CDS	argS	NC_008610.1	93735	95438	D	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase	93735..95438	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554702
YP_903351.1	CDS	Rmag_0080	NC_008610.1	95435	98596	D	PFAM: UvrD/REP helicase; KEGG: cbu:CBU_1230 UvrD/REP helicase family protein; UvrD/REP helicase	95435..98596	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554703
YP_903352.1	CDS	Rmag_0082	NC_008610.1	99327	99908	R	PFAM: thiamine monophosphate synthase; KEGG: cvi:CV0150 probable thiamine-phosphate diphosphorylase; thiamine-phosphate diphosphorylase	complement(99327..99908)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554704
YP_903353.1	CDS	Rmag_0083	NC_008610.1	99907	100869	D	PFAM: protein of unknown function DUF1239; hypothetical protein	99907..100869	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554705
YP_903354.1	CDS	Rmag_0084	NC_008610.1	100862	101347	D	PFAM: OstA family protein; KEGG: noc:Noc_2791 OstA-like protein; OstA family protein	100862..101347	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554706
YP_903355.1	CDS	sat	NC_008610.1	101492	102700	D	ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase	101492..102700	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554707
YP_903356.1	CDS	Rmag_0086	NC_008610.1	102897	103766	D	KEGG: tbd:Tbd_2284 hypothetical protein; hypothetical protein	102897..103766	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554708
YP_903357.1	CDS	Rmag_0087	NC_008610.1	103798	104277	D	TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_2283 adenylylsulfate reductase, beta subunit; adenylylsulfate reductase, beta subunit	103798..104277	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554709
YP_903358.1	CDS	Rmag_0088	NC_008610.1	104277	106160	D	catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha	104277..106160	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554710
YP_903359.1	CDS	Rmag_0089	NC_008610.1	106231	106581	D	KEGG: tbd:Tbd_2281 hypothetical protein; hypothetical protein	106231..106581	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555313
YP_903360.1	CDS	Rmag_0090	NC_008610.1	106587	107093	D	KEGG: tbd:Tbd_2280 putative peptidyl-prolyl cis-trans isomerase; putative peptidyl-prolyl cis-trans isomerase	106587..107093	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555314
YP_903361.1	CDS	Rmag_0091	NC_008610.1	107096	107455	D	KEGG: tbd:Tbd_1503 hypothetical protein; hypothetical protein	107096..107455	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555315
YP_903362.1	CDS	hppA	NC_008610.1	107558	109558	R	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase	complement(107558..109558)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555316
YP_903363.1	CDS	adk	NC_008610.1	110185	110835	R	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase	complement(110185..110835)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555317
YP_903364.1	CDS	Rmag_0094	NC_008610.1	110906	112150	R	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase	complement(110906..112150)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555318
YP_903365.1	CDS	Rmag_0095	NC_008610.1	114090	114329	R	KEGG: sdn:Sden_3728 cadherin; hypothetical protein	complement(114090..114329)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555319
YP_903366.1	CDS	Rmag_0097	NC_008610.1	116484	117872	R	KEGG: mca:MCA0509 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: cysteinyl-tRNA synthetase, class Ia; cysteinyl-tRNA synthetase	complement(116484..117872)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555320
YP_903367.1	CDS	Rmag_0098	NC_008610.1	118002	118601	D	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tcx:Tcr_1387 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	118002..118601	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555321
YP_903368.1	CDS	Rmag_0099	NC_008610.1	118857	119927	D	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase	118857..119927	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555322
YP_903369.1	CDS	nudE	NC_008610.1	122225	122770	D	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE	122225..122770	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555323
YP_903370.1	CDS	Rmag_0103	NC_008610.1	123511	124758	D	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: tcx:Tcr_1847 diaminopimelate decarboxylase; diaminopimelate decarboxylase	123511..124758	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555324
YP_903371.1	CDS	Rmag_0104	NC_008610.1	124751	125053	D	PFAM: protein of unknown function UPF0044; KEGG: pmu:PM0713 putative RNA-binding protein containing KH domain; hypothetical protein	124751..125053	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555325
YP_903372.1	CDS	Rmag_0105	NC_008610.1	125019	126146	D	KEGG: sde:Sde_2584 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase	125019..126146	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555326
YP_903373.1	CDS	Rmag_0106	NC_008610.1	126127	126963	D	KEGG: cbu:CBU_0098 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase [carboxylating]	126127..126963	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555327
YP_903374.1	CDS	Rmag_0107	NC_008610.1	126949	127707	R	PFAM: inositol monophosphatase; KEGG: noc:Noc_2419 3(2),5 -bisphosphate nucleotidase; inositol monophosphatase	complement(126949..127707)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555328
YP_903375.1	CDS	Rmag_0108	NC_008610.1	127824	129626	R	TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: xfa:XF1350 RNA polymerase sigma-70 factor; RNA polymerase, sigma 70 subunit, RpoD	complement(127824..129626)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555329
YP_903376.1	CDS	Rmag_0109	NC_008610.1	129728	130681	R	KEGG: tbd:Tbd_0387 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase	complement(129728..130681)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555330
YP_903377.1	CDS	ipk	NC_008610.1	130808	131665	R	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	complement(130808..131665)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555331
YP_903378.1	CDS	Rmag_0111	NC_008610.1	131658	132200	R	3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease	complement(131658..132200)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555332
YP_903379.1	CDS	trpD	NC_008610.1	132215	133234	R	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase	complement(132215..133234)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555519
YP_903380.1	CDS	Rmag_0113	NC_008610.1	133242	134456	R	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: aci:ACIAD1126 aminopeptidase P; peptidase M24	complement(133242..134456)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555520
YP_903381.1	CDS	Rmag_0114	NC_008610.1	135125	135394	R	hypothetical protein	complement(135125..135394)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555521
YP_903382.1	CDS	Rmag_0115	NC_008610.1	135363	135722	R	KEGG: tbd:Tbd_2558 hypothetical protein; hypothetical protein	complement(135363..135722)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555522
YP_903383.1	CDS	Rmag_0116	NC_008610.1	135981	136841	R	KEGG: tcx:Tcr_1837 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase	complement(135981..136841)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555523
YP_903384.1	CDS	Rmag_0117	NC_008610.1	136881	137549	D	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase	136881..137549	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555524
YP_903385.1	CDS	Rmag_0118	NC_008610.1	137574	138812	D	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: hin:HI1554 adenosylmethionine--8-amino-7-oxononanoate transaminase; aminotransferase	137574..138812	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555525
YP_903386.1	CDS	Rmag_0120	NC_008610.1	140171	142135	R	TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: cbu:CBU_1815 primosomal protein N'; primosomal protein N'	complement(140171..142135)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555526
YP_903387.1	CDS	Rmag_0121	NC_008610.1	142200	142637	D	PFAM: protein of unknown function UPF0054; KEGG: pae:PA3982 conserved hypothetical protein; hypothetical protein	142200..142637	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555527
YP_903388.1	CDS	Rmag_0122	NC_008610.1	142684	143856	R	TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: cbu:CBU_1509 mesJ protein; tRNA(Ile)-lysidine synthetase	complement(142684..143856)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555528
YP_903389.1	CDS	Rmag_0123	NC_008610.1	143837	144787	R	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha	complement(143837..144787)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555529
YP_903390.1	CDS	Rmag_0124	NC_008610.1	145278	145955	D	PFAM: protein of unknown function DUF47; KEGG: pae:PA5208 hypothetical protein; hypothetical protein	145278..145955	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555530
YP_903391.1	CDS	Rmag_0125	NC_008610.1	145966	147246	D	PFAM: phosphate transporter; KEGG: csa:Csal_0712 phosphate transporter; phosphate transporter	145966..147246	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555531
YP_903392.1	CDS	Rmag_0126	NC_008610.1	147250	147480	D	PFAM: BolA family protein; KEGG: mca:MCA0260 toluene-tolerance protein, putative; BolA family protein	147250..147480	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555532
YP_903393.1	CDS	Rmag_0127	NC_008610.1	147921	149225	D	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: tcx:Tcr_0779 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase domain-containing protein	147921..149225	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555533
YP_903394.1	CDS	Rmag_0128	NC_008610.1	149876	150919	R	KEGG: gme:Gmet_2337 hypothetical protein; hypothetical protein	complement(149876..150919)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555534
YP_903395.1	CDS	Rmag_0129	NC_008610.1	150928	152394	R	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: bcz:BCZK0793 alginate O-acetyltransferase; membrane bound O-acyl transferase, MBOAT family protein	complement(150928..152394)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555535
YP_903396.1	CDS	Rmag_0130	NC_008610.1	152860	153246	D	hypothetical protein	152860..153246	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555536
YP_903397.1	CDS	Rmag_0132	NC_008610.1	154782	155966	R	TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; KEGG: ftl:FTL_0968 tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase	complement(154782..155966)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555537
YP_903398.1	CDS	proA	NC_008610.1	155972	157231	R	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase	complement(155972..157231)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555381
YP_903399.1	CDS	Rmag_0134	NC_008610.1	157219	158238	R	KEGG: pfl:PFL_5441 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III, delta subunit	complement(157219..158238)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555382
YP_903400.1	CDS	Rmag_0135	NC_008610.1	158228	158680	R	hypothetical protein	complement(158228..158680)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555383
YP_903401.1	CDS	Rmag_0136	NC_008610.1	158830	160752	D	KEGG: mca:MCA1848 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH	158830..160752	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555384
YP_903402.1	CDS	Rmag_0137	NC_008610.1	160794	161594	D	KEGG: cps:CPS_3451 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase	160794..161594	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555385
YP_903403.1	CDS	glmM	NC_008610.1	161599	162924	D	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase	161599..162924	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555386
YP_903404.1	CDS	Rmag_0139	NC_008610.1	165052	165627	D	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE type, A subunit; electron transport complex, RnfABCDGE type, A subunit	165052..165627	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555387
YP_903405.1	CDS	Rmag_0140	NC_008610.1	165614	166153	D	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tbd:Tbd_2016 electron transport complex, RnfABCDGE type, B subunit; electron transport complex, RnfABCDGE type, B subunit	165614..166153	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555388
YP_903406.1	CDS	Rmag_0141	NC_008610.1	166146	167639	D	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: noc:Noc_1173 electron transport complex protein RnfC; electron transport complex, RnfABCDGE type, C subunit	166146..167639	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555389
YP_903407.1	CDS	Rmag_0142	NC_008610.1	167669	168583	D	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: eca:ECA2279 electron transport complex protein; electron transport complex, RnfABCDGE type, D subunit	167669..168583	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555390
YP_903408.1	CDS	Rmag_0143	NC_008610.1	168583	169191	D	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: tcx:Tcr_1032 electron transport complex, RnfABCDGE type, G subunit; electron transport complex, RnfABCDGE type, G subunit	168583..169191	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555391
YP_903409.1	CDS	Rmag_0144	NC_008610.1	170121	170891	R	KEGG: tcx:Tcr_0902 hypothetical protein; hypothetical protein	complement(170121..170891)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555392
YP_903410.1	CDS	Rmag_0145	NC_008610.1	170888	171757	R	TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: noc:Noc_0714 succinyl-CoA ligase, alpha subunit; succinyl-CoA synthetase (ADP-forming) alpha subunit	complement(170888..171757)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555393
YP_903411.1	CDS	sucC	NC_008610.1	171754	172914	R	catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta	complement(171754..172914)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555394
YP_903412.1	CDS	Rmag_0147	NC_008610.1	172969	173532	D	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P	172969..173532	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555395
YP_903413.1	CDS	Rmag_0148	NC_008610.1	173595	174476	D	PFAM: tRNA synthetase, class II (D, K and N); KEGG: cps:CPS_4763 conserved hypothetical protein TIGR00462; tRNA synthetase, class II (D, K and N)	173595..174476	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555396
YP_903414.1	CDS	Rmag_0149	NC_008610.1	174527	175771	D	PFAM: Sel1 domain protein repeat-containing protein; KEGG: lpf:lpl1180 hypothetical protein; Sel1 domain-containing protein	174527..175771	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555397
YP_903415.1	CDS	Rmag_0151	NC_008610.1	176434	177645	D	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase	176434..177645	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555398
YP_903416.1	CDS	Rmag_0152	NC_008610.1	177993	178577	R	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aci:ACIAD0342 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase) (PGP synthase); CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	complement(177993..178577)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555399
YP_903417.1	CDS	Rmag_0153	NC_008610.1	178742	179995	R	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: par:Psyc_2052 probable UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	complement(178742..179995)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555400
YP_903418.1	CDS	Rmag_0155	NC_008610.1	180638	182032	R	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetases; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: lpp:lpp0978 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase	complement(180638..182032)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554653
YP_903419.1	CDS	Rmag_0156	NC_008610.1	182253	184142	D	TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: tcx:Tcr_1549 sulfate thiol esterase; sulfate thiol esterase SoxB	182253..184142	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554654
YP_903420.1	CDS	Rmag_0157	NC_008610.1	184536	185663	D	KEGG: jan:Jann_0120 hypothetical protein; hypothetical protein	184536..185663	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554655
YP_903421.1	CDS	Rmag_0158	NC_008610.1	185671	186654	R	KEGG: noc:Noc_2788 sugar phosphate isomerase involved in capsule formation, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein	complement(185671..186654)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554656
YP_903422.1	CDS	Rmag_0159	NC_008610.1	186730	187173	D	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: bbr:BB2274 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase	186730..187173	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554657
YP_903423.1	CDS	rpsL	NC_008610.1	187302	187676	D	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12	187302..187676	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554658
YP_903424.1	CDS	Rmag_0161	NC_008610.1	187709	188182	D	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7	187709..188182	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554659
YP_903425.1	CDS	Rmag_0162	NC_008610.1	188207	190309	D	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G	188207..190309	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554660
YP_903426.1	CDS	Rmag_0163	NC_008610.1	190320	191510	D	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu	190320..191510	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554661
YP_903427.1	CDS	rpsJ	NC_008610.1	191601	191912	D	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10	191601..191912	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554662
YP_903428.1	CDS	rplC	NC_008610.1	191948	192664	D	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3	191948..192664	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554663
YP_903429.1	CDS	rplD	NC_008610.1	192684	193298	D	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4	192684..193298	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554664
YP_903430.1	CDS	rplW	NC_008610.1	193295	193585	D	binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23	193295..193585	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554665
YP_903431.1	CDS	rplB	NC_008610.1	193596	194426	D	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2	193596..194426	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554666
YP_903432.1	CDS	rpsS	NC_008610.1	194429	194698	D	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19	194429..194698	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554667
YP_903433.1	CDS	rplV	NC_008610.1	194713	195045	D	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22	194713..195045	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554668
YP_903434.1	CDS	Rmag_0171	NC_008610.1	195053	195751	D	KEGG: pae:PA4257 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein; 30S ribosomal protein S3	195053..195751	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554669
YP_903435.1	CDS	rplP	NC_008610.1	195764	196174	D	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16	195764..196174	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554670
YP_903436.1	CDS	Rmag_0173	NC_008610.1	196174	196362	D	one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29	196174..196362	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554671
YP_903437.1	CDS	Rmag_0174	NC_008610.1	196359	196625	D	PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17; 30S ribosomal protein S17	196359..196625	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555420
YP_903438.1	CDS	rplN	NC_008610.1	196654	197022	D	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14	196654..197022	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555421
YP_903439.1	CDS	rplX	NC_008610.1	197022	197333	D	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24	197022..197333	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555422
YP_903440.1	CDS	rplE	NC_008610.1	197356	197895	D	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5	197356..197895	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555423
YP_903441.1	CDS	rpsN	NC_008610.1	197901	198206	D	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14	197901..198206	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555424
YP_903442.1	CDS	rpsH	NC_008610.1	198218	198613	D	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8	198218..198613	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555425
YP_903443.1	CDS	rplF	NC_008610.1	198629	199174	D	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6	198629..199174	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555426
YP_903444.1	CDS	rplR	NC_008610.1	199192	199539	D	binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18	199192..199539	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555427
YP_903445.1	CDS	rpsE	NC_008610.1	199583	200101	D	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5	199583..200101	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555428
YP_903446.1	CDS	rpmD	NC_008610.1	200101	200421	D	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30	200101..200421	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555429
YP_903447.1	CDS	rplO	NC_008610.1	200426	200869	D	late assembly protein; 50S ribosomal protein L15	200426..200869	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555430
YP_903448.1	CDS	Rmag_0185	NC_008610.1	200873	202171	D	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: noc:Noc_2305 SecY protein; protein translocase subunit secY/sec61 alpha	200873..202171	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555431
YP_903449.1	CDS	rpmJ	NC_008610.1	202185	202298	D	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36	202185..202298	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555432
YP_903450.1	CDS	rpsM	NC_008610.1	202454	202807	D	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13	202454..202807	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555433
YP_903451.1	CDS	Rmag_0188	NC_008610.1	202823	203206	D	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11	202823..203206	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555434
YP_903452.1	CDS	Rmag_0189	NC_008610.1	203216	203842	D	PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: sgl:SG2254 30S ribosomal protein S4; 30S ribosomal protein S4	203216..203842	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555435
YP_903453.1	CDS	Rmag_0190	NC_008610.1	203855	204835	D	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha	203855..204835	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555436
YP_903454.1	CDS	rplQ	NC_008610.1	204846	205244	D	is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17	204846..205244	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555437
YP_903455.1	CDS	rpsU	NC_008610.1	205255	205470	D	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21	205255..205470	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555438
YP_903456.1	CDS	Rmag_0196	NC_008610.1	209161	209529	R	KEGG: noc:Noc_2728 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase	complement(209161..209529)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555439
YP_903457.1	CDS	Rmag_0197	NC_008610.1	209570	210658	D	PFAM: Polynucleotide adenylyltransferase region; KEGG: cbu:CBU_1827 tRNA nucleotidyltransferase (CCA-adding enzyme); polynucleotide adenylyltransferase region	209570..210658	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555353
YP_903458.1	CDS	Rmag_0199	NC_008610.1	212133	214607	R	KEGG: nmu:Nmul_A0722 hypothetical protein; hypothetical protein	complement(212133..214607)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555354
YP_903459.1	CDS	engB	NC_008610.1	214597	215196	R	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC	complement(214597..215196)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555355
YP_903460.1	CDS	Rmag_0201	NC_008610.1	215270	215560	D	KEGG: sdn:Sden_1464 cytochrome c, class I; cytochrome c, class I	215270..215560	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555356
YP_903461.1	CDS	Rmag_0202	NC_008610.1	215620	215913	D	KEGG: mag:amb3084 cytochrome c4 precursor; cytochrome c4 precursor	215620..215913	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555357
YP_903462.1	CDS	Rmag_0203	NC_008610.1	215942	216625	D	PFAM: cytochrome c, class I; KEGG: ppr:PBPRA3501 putative cytochrome c4; cytochrome c, class I	215942..216625	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555358
YP_903463.1	CDS	Rmag_0204	NC_008610.1	216740	218029	D	TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase, FKBP-type; trigger factor, C-terminal domain protein; trigger factor, N-terminal domain; KEGG: hch:HCH_02157 trigger factor; trigger factor	216740..218029	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555359
YP_903464.1	CDS	clpP	NC_008610.1	218037	218633	D	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit	218037..218633	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555360
YP_903465.1	CDS	clpX	NC_008610.1	218638	219903	D	binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX	218638..219903	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555361
YP_903466.1	CDS	Rmag_0207	NC_008610.1	219918	221243	D	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: eca:ECA3933 putative GTP-binding phage-related protein; small GTP-binding protein	219918..221243	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555362
YP_903467.1	CDS	Rmag_0208	NC_008610.1	221207	223543	D	KEGG: tbd:Tbd_1675 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La	221207..223543	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555363
YP_903468.1	CDS	Rmag_0209	NC_008610.1	224784	226049	R	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: hin:HI0624 Sun protein; sun protein	complement(224784..226049)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555364
YP_903469.1	CDS	Rmag_0210	NC_008610.1	226039	226764	R	KEGG: noc:Noc_2253 thiol-disulfide interchange protein DsbC; thiol-disulfide interchange protein DsbC	complement(226039..226764)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555365
YP_903470.1	CDS	Rmag_0211	NC_008610.1	226850	228271	D	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: noc:Noc_0289 leucyl aminopeptidase; leucyl aminopeptidase	226850..228271	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555366
YP_903471.1	CDS	Rmag_0213	NC_008610.1	229409	230029	R	KEGG: tcx:Tcr_0450 hypothetical protein; hypothetical protein	complement(229409..230029)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555367
YP_903472.1	CDS	Rmag_0214	NC_008610.1	230131	230535	R	PFAM: CBS domain containing protein; KEGG: vvy:VV0994 hypothetical protein; signal-transduction protein	complement(230131..230535)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555368
YP_903473.1	CDS	Rmag_0215	NC_008610.1	230535	230885	R	KEGG: vpa:VP0813 putative nitrogen regulatory protein P-II family protein; putative nitrogen regulatory protein P-II family protein	complement(230535..230885)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555369
YP_903474.1	CDS	Rmag_0216	NC_008610.1	230894	231634	R	PFAM: protein of unknown function DUF1538; KEGG: vpa:VP0812 hypothetical protein; hypothetical protein	complement(230894..231634)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555370
YP_903475.1	CDS	Rmag_0217	NC_008610.1	231631	232362	R	PFAM: protein of unknown function DUF1538; KEGG: cps:CPS_1953 hypothetical protein; hypothetical protein	complement(231631..232362)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555371
YP_903476.1	CDS	Rmag_0218	NC_008610.1	232489	233349	D	PFAM: aminotransferase, class IV; KEGG: noc:Noc_1662 aminotransferase, class IV; aminodeoxychorismate lyase apoprotein	232489..233349	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554894
YP_903477.1	CDS	tmk	NC_008610.1	233845	234462	D	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase	233845..234462	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554895
YP_903478.1	CDS	Rmag_0221	NC_008610.1	234459	235466	D	KEGG: cbu:CBU_0500 DNA polymerase III, delta prime subunit; similar to ATPases involved in DNA replication; DNA polymerase III, delta prime subunit	234459..235466	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554896
YP_903479.1	CDS	Rmag_0222	NC_008610.1	235504	236790	D	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase	235504..236790	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554897
YP_903480.1	CDS	Rmag_0223	NC_008610.1	237349	238002	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: tcx:Tcr_0999 HAD-superfamily subfamily IB, PSPase-like; HAD family hydrolase	237349..238002	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554898
YP_903481.1	CDS	Rmag_0224	NC_008610.1	238031	238546	R	KEGG: tbd:Tbd_0575 hypothetical protein; hypothetical protein	complement(238031..238546)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554899
YP_903482.1	CDS	Rmag_0225	NC_008610.1	238575	238799	R	PFAM: SirA family protein; KEGG: mag:amb0858 predicted redox protein; SirA family protein	complement(238575..238799)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554900
YP_903483.1	CDS	Rmag_0227	NC_008610.1	240174	240845	R	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A	complement(240174..240845)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554901
YP_903484.1	CDS	Rmag_0228	NC_008610.1	240887	241492	D	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: vpa:VP2621 Ham1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	240887..241492	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554902
YP_903485.1	CDS	Rmag_0232	NC_008610.1	244285	245175	D	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase	244285..245175	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554903
YP_903486.1	CDS	Rmag_0233	NC_008610.1	245168	246016	D	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: noc:Noc_0363 dihydroorotate dehydrogenase electron transfer subunit; dihydroorotate oxidase B, electron transfer subunit	245168..246016	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554904
YP_903487.1	CDS	Rmag_0234	NC_008610.1	246013	246651	D	TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: eca:ECA3627 putative alanine racemase; hypothetical protein	246013..246651	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554905
YP_903488.1	CDS	Rmag_0235	NC_008610.1	248041	250506	D	KEGG: lpp:lpp1719 hypothetical protein; membrane protein-like	248041..250506	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554906
YP_903489.1	CDS	Rmag_0236	NC_008610.1	250503	251927	D	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: plu:plu4064 tldD protein, suppresses the inhibitory activity of the carbon storage regulator (CSRA); peptidase U62, modulator of DNA gyrase	250503..251927	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554907
YP_903490.1	CDS	Rmag_0237	NC_008610.1	252028	252384	D	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: tcx:Tcr_0817 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	252028..252384	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554908
YP_903491.1	CDS	Rmag_0238	NC_008610.1	252388	252867	D	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B	252388..252867	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554909
YP_903492.1	CDS	Rmag_0239	NC_008610.1	252867	253481	D	KEGG: lpn:lpg2787 NADH dehydrogenase I, C subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase, subunit C	252867..253481	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554910
YP_903493.1	CDS	Rmag_0240	NC_008610.1	253483	254736	D	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D	253483..254736	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554911
YP_903494.1	CDS	Rmag_0241	NC_008610.1	254733	255206	D	KEGG: tcx:Tcr_0821 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase, E subunit	254733..255206	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554912
YP_903495.1	CDS	Rmag_0242	NC_008610.1	255203	256471	D	KEGG: lpp:lpp2831 NADH dehydrogenase I chain F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase, F subunit	255203..256471	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554913
YP_903496.1	CDS	Rmag_0243	NC_008610.1	256476	258737	D	TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; KEGG: tcx:Tcr_0823 NADH-quinone oxidoreductase, chain G; NADH-quinone oxidoreductase, chain G	256476..258737	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555645
YP_903497.1	CDS	Rmag_0244	NC_008610.1	258737	259810	D	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: tcx:Tcr_0824 respiratory-chain NADH dehydrogenase, subunit 1; respiratory-chain NADH dehydrogenase, subunit 1	258737..259810	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555646
YP_903498.1	CDS	Rmag_0245	NC_008610.1	259824	260315	D	Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I	259824..260315	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555647
YP_903499.1	CDS	Rmag_0246	NC_008610.1	260325	260933	D	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase, chain 6	260325..260933	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555648
YP_903500.1	CDS	Rmag_0247	NC_008610.1	260934	261239	D	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rso:RSc2052 probable transmembrane NADH dehydrogenase I (chain K) oxidoreductase protein; NADH-ubiquinone oxidoreductase, chain 4L	260934..261239	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555649
YP_903501.1	CDS	Rmag_0248	NC_008610.1	261242	263203	D	KEGG: eba:ebA4846 NADH dehydrogenase I, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain L	261242..263203	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555650
YP_903502.1	CDS	Rmag_0249	NC_008610.1	263206	264711	D	KEGG: tcx:Tcr_0829 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain M	263206..264711	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555651
YP_903503.1	CDS	Rmag_0250	NC_008610.1	264715	266169	D	KEGG: tbd:Tbd_1155 NADH dehydrogenase I chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N	264715..266169	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555652
YP_903504.1	CDS	Rmag_0251	NC_008610.1	266494	274953	D	PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein; BNR repeat-containing glycosyl hydrolase	266494..274953	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555653
YP_903505.1	CDS	Rmag_0252	NC_008610.1	275408	275623	D	hypothetical protein	275408..275623	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555654
YP_903506.1	CDS	Rmag_0253	NC_008610.1	276554	277822	D	PFAM: outer membrane efflux protein; KEGG: cvi:CV1734 probable outer membrane protein; outer membrane efflux protein	276554..277822	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555655
YP_903507.1	CDS	Rmag_0254	NC_008610.1	277840	278184	D	hypothetical protein	277840..278184	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555656
YP_903508.1	CDS	Rmag_0255	NC_008610.1	278611	280689	D	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: par:Psyc_1599 ABC drug efflux transporter, fused ATPase and inner mebrane subunits; ABC transporter related	278611..280689	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555657
YP_903509.1	CDS	Rmag_0256	NC_008610.1	280701	281870	D	PFAM: secretion protein HlyD family protein; KEGG: par:Psyc_1598 HlyD family secretion protein; secretion protein HlyD family protein	280701..281870	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555658
YP_903510.1	CDS	Rmag_0257	NC_008610.1	282381	283169	R	TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tcx:Tcr_1981 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC	complement(282381..283169)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555659
YP_903511.1	CDS	Rmag_0258	NC_008610.1	283157	284008	R	PFAM: periplasmic solute binding protein; KEGG: rty:RT0013 probable zinc/manganese ABC transporter substrate binding protein; periplasmic solute binding protein	complement(283157..284008)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555660
YP_903512.1	CDS	Rmag_0259	NC_008610.1	284049	285005	R	PFAM: putative methyltransferase; methyltransferase, putative; Methyltransferase type 11; KEGG: vvy:VV2291 hypothetical protein; methyltransferase, putative	complement(284049..285005)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555661
YP_903513.1	CDS	Rmag_0260	NC_008610.1	285105	285485	D	hypothetical protein	285105..285485	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555662
YP_903514.1	CDS	frr	NC_008610.1	285556	286113	R	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor	complement(285556..286113)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555663
YP_903515.1	CDS	pyrH	NC_008610.1	286117	286836	R	Catalyzes the phosphorylation of UMP to UDP; uridylate kinase	complement(286117..286836)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555157
YP_903516.1	CDS	Rmag_0263	NC_008610.1	286912	289728	D	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: vch:VC0394 excinuclease ABC, subunit A; excinuclease ABC, A subunit	286912..289728	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555158
YP_903517.1	CDS	Rmag_0264	NC_008610.1	289711	290454	R	hypothetical protein	complement(289711..290454)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555159
YP_903518.1	CDS	Rmag_0265	NC_008610.1	290451	291056	R	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pha:PSHAa1948 phosphoribosylglycinamide formyltransferase 1; phosphoribosylglycinamide formyltransferase	complement(290451..291056)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555160
YP_903519.1	CDS	Rmag_0266	NC_008610.1	291071	292072	R	KEGG: eca:ECA1254 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase	complement(291071..292072)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555161
YP_903520.1	CDS	Rmag_0267	NC_008610.1	292127	292693	D	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_1186 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase	292127..292693	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555162
YP_903521.1	CDS	Rmag_0268	NC_008610.1	292690	293364	D	PFAM: Chromosomal replication initiator, DnaA; KEGG: cbu:CBU_1734 chromosomal replication initiator protein DnaA; regulatory inactivation of DnaA Hda protein	292690..293364	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555163
YP_903522.1	CDS	Rmag_0269	NC_008610.1	293361	293768	R	hypothetical protein	complement(293361..293768)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555164
YP_903523.1	CDS	Rmag_0270	NC_008610.1	293865	295283	D	TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mfa:Mfla_0652 uroporphyrin-III C-methyltransferase; uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase	293865..295283	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555165
YP_903524.1	CDS	Rmag_0271	NC_008610.1	295688	296497	D	KEGG: tcx:Tcr_1620 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase	295688..296497	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555166
YP_903525.1	CDS	Rmag_0272	NC_008610.1	296552	298456	D	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: psp:PSPPH_3309 cytochrome c-type biogenesis protein CcmF; cytochrome c-type biogenesis protein CcmF	296552..298456	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555167
YP_903526.1	CDS	Rmag_0273	NC_008610.1	298453	299604	D	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dar:Daro_1405 TPR repeat; TPR repeat-containing protein	298453..299604	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555168
YP_903527.1	CDS	Rmag_0274	NC_008610.1	299609	300739	D	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase	299609..300739	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555169
YP_903528.1	CDS	Rmag_0275	NC_008610.1	300743	301417	D	KEGG: vvy:VV2786 tRNA-(guanine-N1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (Guanine37-N1) methyltransferase	300743..301417	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555170
YP_903529.1	CDS	Rmag_0276	NC_008610.1	301598	301936	D	PFAM: nitrogen regulatory protein P-II; KEGG: mca:MCA2137 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II	301598..301936	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555171
YP_903530.1	CDS	Rmag_0277	NC_008610.1	301983	303221	D	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cps:CPS_3995 ammonium transporter; ammonium transporter	301983..303221	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555172
YP_903531.1	CDS	Rmag_0278	NC_008610.1	303496	304386	D	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase	303496..304386	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555173
YP_903532.1	CDS	Rmag_0279	NC_008610.1	304389	305504	D	KEGG: dar:Daro_0847 NlpBDapX lipoprotein; NlpBDapX lipoprotein	304389..305504	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555174
YP_903533.1	CDS	Rmag_0280	NC_008610.1	305567	307411	D	PFAM: NAD-dependent DNA ligase; NAD-dependent DNA ligase, OB-fold; KEGG: dps:DP1006 related to NAD-dependent DNA ligase; DNA ligase (NAD(+))	305567..307411	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555175
YP_903534.1	CDS	Rmag_0281	NC_008610.1	307708	308055	D	PFAM: nitrogen regulatory protein P-II; KEGG: sde:Sde_0232 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II	307708..308055	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555176
YP_903535.1	CDS	Rmag_0283	NC_008610.1	309194	309634	D	PFAM: CBS domain containing protein; KEGG: bxe:Bxe_A1873 hypothetical protein; signal-transduction protein	309194..309634	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555401
YP_903536.1	CDS	Rmag_0284	NC_008610.1	309685	310209	D	PFAM: ANTAR domain protein; KEGG: mca:MCA0588 response regulator NasT; response regulator receiver/ANTAR domain-containing protein	309685..310209	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555402
YP_903537.1	CDS	Rmag_0285	NC_008610.1	310215	311081	R	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: tcx:Tcr_1974 sec-independent protein translocase TatC; Sec-independent protein translocase, TatC subunit	complement(310215..311081)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555403
YP_903538.1	CDS	Rmag_0286	NC_008610.1	311081	311362	R	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: neu:NE0638 mttA/Hcf106 family; twin-arginine translocation protein, TatB subunit	complement(311081..311362)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555404
YP_903539.1	CDS	Rmag_0287	NC_008610.1	311374	311577	R	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ilo:IL2370 sec-independent protein secretion pathway component, TatA family; twin arginine-targeting protein translocase	complement(311374..311577)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555405
YP_903540.1	CDS	hisE	NC_008610.1	311594	311911	R	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase	complement(311594..311911)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555406
YP_903541.1	CDS	hisI	NC_008610.1	311904	312284	R	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase	complement(311904..312284)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555407
YP_903542.1	CDS	Rmag_0290	NC_008610.1	312610	313941	R	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tcx:Tcr_0140 glutathione reductase; NADPH-glutathione reductase	complement(312610..313941)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555408
YP_903543.1	CDS	Rmag_0292	NC_008610.1	315374	316468	R	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: mca:MCA0302 peptide chain release factor 2, programmed frameshift; peptide chain release factor 2	complement(315374..316468)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555409
YP_903544.1	CDS	rpsO	NC_008610.1	316527	316787	R	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15	complement(316527..316787)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555410
YP_903545.1	CDS	Rmag_0294	NC_008610.1	316850	317746	R	PFAM: lipid A biosynthesis acyltransferase; KEGG: psb:Psyr_1614 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase	complement(316850..317746)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555411
YP_903546.1	CDS	Rmag_0295	NC_008610.1	317787	319568	D	KEGG: pfo:Pfl_5148 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase	317787..319568	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555412
YP_903547.1	CDS	Rmag_0296	NC_008610.1	319565	321445	R	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: tcx:Tcr_0562 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase	complement(319565..321445)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555413
YP_903548.1	CDS	Rmag_0297	NC_008610.1	321442	321714	R	hypothetical protein	complement(321442..321714)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555414
YP_903549.1	CDS	mraW	NC_008610.1	321716	322639	R	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: tcx:Tcr_0559 methyltransferase; S-adenosyl-methyltransferase MraW	complement(321716..322639)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555415
YP_903550.1	CDS	Rmag_0299	NC_008610.1	322947	323222	D	hypothetical protein	322947..323222	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555416
YP_903551.1	CDS	Rmag_0302	NC_008610.1	325602	327839	D	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A	325602..327839	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555417
YP_903552.1	CDS	Rmag_0303	NC_008610.1	327941	328318	D	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: tcx:Tcr_1389 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase	327941..328318	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555418
YP_903553.1	CDS	Rmag_0304	NC_008610.1	328315	329109	D	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase	328315..329109	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555419
YP_903554.1	CDS	Rmag_0305	NC_008610.1	329103	330197	D	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase	329103..330197	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554868
YP_903555.1	CDS	Rmag_0306	NC_008610.1	330299	332884	D	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: mca:MCA1421 DNA gyrase, A subunit; DNA gyrase subunit A	330299..332884	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554869
YP_903556.1	CDS	Rmag_0307	NC_008610.1	333760	335328	R	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: lpf:lpl0905 peptide chain release factor 3; peptide chain release factor 3	complement(333760..335328)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554870
YP_903557.1	CDS	Rmag_0308	NC_008610.1	335328	335774	R	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: xcb:XC_0132 deoxycytidylate deaminase; CMP/dCMP deaminase, zinc-binding	complement(335328..335774)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554871
YP_903558.1	CDS	mraY	NC_008610.1	335777	336862	R	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase	complement(335777..336862)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554872
YP_903559.1	CDS	Rmag_0310	NC_008610.1	336868	337869	R	PFAM: peptidylprolyl isomerase, FKBP-type; peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: tde:TDE2391 peptidyl-prolyl cis-trans isomerase; peptidylprolyl isomerase	complement(336868..337869)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554873
YP_903560.1	CDS	Rmag_0311	NC_008610.1	337987	338220	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: par:Psyc_0327 putative 4Fe-4S ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein	337987..338220	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554874
YP_903561.1	CDS	Rmag_0312	NC_008610.1	339057	340175	R	PFAM: aminotransferase, class V; KEGG: cps:CPS_2190 aminotransferase, class V; alanine-glyoxylate aminotransferase	complement(339057..340175)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554875
YP_903562.1	CDS	Rmag_0313	NC_008610.1	340995	342425	D	PFAM: FAD linked oxidase domain protein; KEGG: psp:PSPPH_3252 glycolate oxidase, GlcD subunit; FAD linked oxidase domain-containing protein	340995..342425	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554876
YP_903563.1	CDS	Rmag_0314	NC_008610.1	342425	342958	D	KEGG: eba:ebA4491 FAD linked oxidase; FAD/FMN-containing dehydrogenases-like	342425..342958	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554877
YP_903564.1	CDS	Rmag_0315	NC_008610.1	342958	344082	D	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: neu:NE0673 glycolate oxidase (iron-sulfur subunit) protein; hypothetical protein	342958..344082	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554878
YP_903565.1	CDS	Rmag_0316	NC_008610.1	344806	345219	D	SMART: Rhodanese domain protein; KEGG: pol:Bpro_0171 rhodanese-like; rhodanese domain-containing protein	344806..345219	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554879
YP_903566.1	CDS	Rmag_0317	NC_008610.1	345220	346521	D	PFAM: major facilitator superfamily MFS_1; KEGG: vvy:VV2596 putative AmpG protein; major facilitator transporter	345220..346521	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554880
YP_903567.1	CDS	Rmag_0318	NC_008610.1	346518	347501	D	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: tbd:Tbd_0727 beta-N-acetylhexosaminidase; Beta-N-acetylhexosaminidase	346518..347501	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554881
YP_903568.1	CDS	Rmag_0319	NC_008610.1	347498	347773	D	hypothetical protein	347498..347773	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554882
YP_903569.1	CDS	Rmag_0320	NC_008610.1	347815	349971	R	PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I; UvrD/REP helicase	complement(347815..349971)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554883
YP_903570.1	CDS	Rmag_0321	NC_008610.1	350089	350274	D	hypothetical protein	350089..350274	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554884
YP_903571.1	CDS	Rmag_0322	NC_008610.1	350332	351279	D	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: sde:Sde_1081 hypothetical protein; L-lysine 2,3-aminomutase	350332..351279	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554885
YP_903572.1	CDS	Rmag_0323	NC_008610.1	351271	351825	R	PFAM: Redoxin domain protein; KEGG: tbd:Tbd_2118 thioredoxin; redoxin domain-containing protein	complement(351271..351825)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554886
YP_903573.1	CDS	Rmag_0324	NC_008610.1	351838	352185	D	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sdn:Sden_1646 arsenate reductase; arsenate reductase	351838..352185	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554887
YP_903574.1	CDS	Rmag_0325	NC_008610.1	352211	352870	R	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: tcx:Tcr_1309 glutathione S-transferase-like; glutathione S-transferase domain-containing protein	complement(352211..352870)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554615
YP_903575.1	CDS	Rmag_0326	NC_008610.1	353318	353650	R	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sde:Sde_3343 poly(A) polymerase, PcnB; iojap-like protein	complement(353318..353650)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554616
YP_903576.1	CDS	Rmag_0327	NC_008610.1	353647	354324	R	TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: eca:ECA1306 nicotinate-nucleotide adenylyltransferase; nicotinate-nucleotide adenylyltransferase	complement(353647..354324)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554617
YP_903577.1	CDS	Rmag_0328	NC_008610.1	354321	355043	R	PFAM: beta-lactamase domain protein; KEGG: bsu:BG12648 involved in polyketide synthesis; beta-lactamase domain-containing protein	complement(354321..355043)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554618
YP_903578.1	CDS	Rmag_0329	NC_008610.1	355482	356426	D	KEGG: eci:UTI89_C2927 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase D	355482..356426	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554619
YP_903579.1	CDS	Rmag_0331	NC_008610.1	357197	357592	R	PFAM: peptidase S24, S26A and S26B; KEGG: tbd:Tbd_1516 hypothetical protein; putative prophage repressor	complement(357197..357592)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554620
YP_903580.1	CDS	Rmag_0332	NC_008610.1	357580	358389	R	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase	complement(357580..358389)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554621
YP_903581.1	CDS	Rmag_0333	NC_008610.1	358468	359055	D	KEGG: noc:Noc_1372 hypothetical protein; membrane protein-like	358468..359055	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554622
YP_903582.1	CDS	Rmag_0334	NC_008610.1	359363	360406	D	hypothetical protein	359363..360406	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554623
YP_903583.1	CDS	Rmag_0336	NC_008610.1	361210	362583	D	PFAM: Citrate transporter; KEGG: sde:Sde_0065 Na+/H+ antiporter (NhaD family); citrate transporter	361210..362583	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554624
YP_903584.1	CDS	Rmag_0337	NC_008610.1	362570	363274	D	TIGRFAM: putative transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: cps:CPS_4744 putative transcriptional activator; Baf family transcriptional activator	362570..363274	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554625
YP_903585.1	CDS	Rmag_0338	NC_008610.1	363305	364504	D	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase	363305..364504	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554626
YP_903586.1	CDS	Rmag_0339	NC_008610.1	364507	365235	D	TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: noc:Noc_1041 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase B	364507..365235	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554627
YP_903587.1	CDS	Rmag_0340	NC_008610.1	365592	368360	D	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: noc:Noc_2277 isoleucyl-tRNA synthetase, class Ia; isoleucyl-tRNA synthetase	365592..368360	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554628
YP_903588.1	CDS	aroB	NC_008610.1	368361	369440	D	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase	368361..369440	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554629
YP_903589.1	CDS	Rmag_0342	NC_008610.1	369447	370037	D	hypothetical protein	369447..370037	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554630
YP_903590.1	CDS	Rmag_0343	NC_008610.1	370040	370327	D	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: neu:NE2071 Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	370040..370327	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554631
YP_903591.1	CDS	gatA	NC_008610.1	370329	371771	D	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A	370329..371771	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554632
YP_903592.1	CDS	gatB	NC_008610.1	371773	373203	D	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B	371773..373203	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554633
YP_903593.1	CDS	Rmag_0346	NC_008610.1	373208	374581	D	PFAM: protein of unknown function UPF0061; KEGG: vpa:VP0909 hypothetical protein; hypothetical protein	373208..374581	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554828
YP_903594.1	CDS	Rmag_0347	NC_008610.1	374578	375210	R	PFAM: peptidase M50; KEGG: tcx:Tcr_1229 peptidase M50; peptidase M50	complement(374578..375210)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554829
YP_903595.1	CDS	Rmag_0348	NC_008610.1	375246	376925	D	TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: hch:HCH_04773 prolyl-tRNA synthetase; prolyl-tRNA synthetase	375246..376925	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554830
YP_903596.1	CDS	Rmag_0349	NC_008610.1	376933	377745	D	KEGG: mfa:Mfla_2122 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase	376933..377745	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554831
YP_903597.1	CDS	Rmag_0350	NC_008610.1	377720	378889	R	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: noc:Noc_2263 hypothetical protein; hypothetical protein	complement(377720..378889)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554832
YP_903598.1	CDS	eno	NC_008610.1	379012	380289	R	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase	complement(379012..380289)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554833
YP_903599.1	CDS	Rmag_0352	NC_008610.1	380307	381401	R	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ	complement(380307..381401)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554834
YP_903600.1	CDS	dnaK	NC_008610.1	381478	383385	R	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK	complement(381478..383385)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554835
YP_903601.1	CDS	coaD	NC_008610.1	383462	383941	R	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase	complement(383462..383941)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554836
YP_903602.1	CDS	Rmag_0355	NC_008610.1	383962	384540	R	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: ilo:IL0225 N6-adenine-specific methylase; putative methyltransferase	complement(383962..384540)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554837
YP_903603.1	CDS	Rmag_0356	NC_008610.1	384521	385051	R	PFAM: Inorganic pyrophosphatase; KEGG: ilo:IL2263 inorganic pyrophosphatase; inorganic diphosphatase	complement(384521..385051)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554838
YP_903604.1	CDS	Rmag_0361	NC_008610.1	389644	391806	D	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_3018 signal transduction histidine kinase, NtrY; periplasmic sensor signal transduction histidine kinase	389644..391806	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554839
YP_903605.1	CDS	Rmag_0362	NC_008610.1	391819	392394	D	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: pol:Bpro_4433 two component transcriptional regulator, fis family; response regulator receiver protein	391819..392394	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554840
YP_903606.1	CDS	trkA	NC_008610.1	392401	393774	D	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component	392401..393774	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554841
YP_903607.1	CDS	Rmag_0364	NC_008610.1	393787	395235	D	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: hch:HCH_00025 trk-type K+ transport system, membrane components; TrkH family potassium uptake protein	393787..395235	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554842
YP_903608.1	CDS	dinG	NC_008610.1	395257	397314	R	helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG	complement(395257..397314)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554843
YP_903609.1	CDS	Rmag_0366	NC_008610.1	397319	398290	R	PFAM: Polyprenyl synthetase; KEGG: ftl:FTL_1041 octaprenyl-diphosphate synthase; dimethylallyltranstransferase	complement(397319..398290)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554844
YP_903610.1	CDS	Rmag_0367	NC_008610.1	398346	398969	R	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sde:Sde_2721 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ	complement(398346..398969)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554845
YP_903611.1	CDS	Rmag_0368	NC_008610.1	399040	400857	D	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: sec:SC3900 GTP-binding elongation factor family protein; GTP-binding protein TypA	399040..400857	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554846
YP_903612.1	CDS	Rmag_0369	NC_008610.1	400941	403994	D	PFAM: acriflavin resistance protein; KEGG: lil:LA2439 acriflavine resistance protein homolog; acriflavin resistance protein	400941..403994	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554847
YP_903613.1	CDS	leuD	NC_008610.1	408911	409525	R	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit	complement(408911..409525)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554567
YP_903614.1	CDS	Rmag_0372	NC_008610.1	409525	410958	R	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit	complement(409525..410958)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554568
YP_903615.1	CDS	Rmag_0373	NC_008610.1	410980	412755	D	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: tbd:Tbd_0060 asparagine synthase, glutamine-hydrolyzing; asparagine synthase (glutamine-hydrolyzing)	410980..412755	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554569
YP_903616.1	CDS	Rmag_0374	NC_008610.1	412748	413188	D	PFAM: ribonuclease H; KEGG: ftl:FTL_0854 ribonuclease H; ribonuclease H	412748..413188	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554570
YP_903617.1	CDS	Rmag_0376	NC_008610.1	414483	415358	D	KEGG: tbd:Tbd_2669 hypothetical protein; hypothetical protein	414483..415358	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554571
YP_903618.1	CDS	Rmag_0378	NC_008610.1	416322	416753	R	PFAM: cyclase/dehydrase; KEGG: vpa:VP0645 hypothetical protein; cyclase/dehydrase	complement(416322..416753)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554572
YP_903619.1	CDS	smpB	NC_008610.1	416752	417249	D	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein	416752..417249	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554573
YP_903620.1	CDS	Rmag_0380	NC_008610.1	417438	417713	D	PFAM: histone family protein DNA-binding protein; KEGG: mca:MCA0532 DNA-binding protein HU-beta; histone family protein DNA-binding protein	417438..417713	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554574
YP_903621.1	CDS	Rmag_0381	NC_008610.1	417809	418234	D	PFAM: nucleoside diphosphate kinase; KEGG: mfa:Mfla_1624 nucleoside-diphosphate kinase; nucleoside diphosphate kinase	417809..418234	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554575
YP_903622.1	CDS	Rmag_0382	NC_008610.1	418283	419353	D	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: lpp:lpp1504 hypothetical protein; radical SAM protein	418283..419353	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554576
YP_903623.1	CDS	Rmag_0383	NC_008610.1	419337	419642	D	hypothetical protein	419337..419642	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554577
YP_903624.1	CDS	ispG	NC_008610.1	419642	420718	D	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	419642..420718	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554578
YP_903625.1	CDS	Rmag_0385	NC_008610.1	420705	421199	R	KEGG: cps:CPS_2123 hypothetical protein; hypothetical protein	complement(420705..421199)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554579
YP_903626.1	CDS	Rmag_0386	NC_008610.1	421196	422998	R	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mca:MCA0817 1-deoxy-D-xylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase	complement(421196..422998)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554580
YP_903627.1	CDS	Rmag_0387	NC_008610.1	423060	424433	R	PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family; peptidase U32	complement(423060..424433)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554581
YP_903628.1	CDS	Rmag_0388	NC_008610.1	424463	425062	D	PFAM: methyltransferase small; KEGG: tcx:Tcr_0213 methyltransferase small; methyltransferase small	424463..425062	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554582
YP_903629.1	CDS	Rmag_0389	NC_008610.1	425113	425442	D	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: tbd:Tbd_2499 glutaredoxin-related protein; glutaredoxin-like protein	425113..425442	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554583
YP_903630.1	CDS	Rmag_0391	NC_008610.1	426387	427046	R	PFAM: protein of unknown function DUF45; KEGG: chy:CHY_0833 hypothetical protein; hypothetical protein	complement(426387..427046)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554584
YP_903631.1	CDS	Rmag_0392	NC_008610.1	427440	431264	R	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase	complement(427440..431264)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554585
YP_903632.1	CDS	Rmag_0394	NC_008610.1	432600	433340	R	PFAM: protein of unknown function DUF28; KEGG: ilo:IL1088 uncharacterized conserved enzyme; hypothetical protein	complement(432600..433340)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555625
YP_903633.1	CDS	Rmag_0395	NC_008610.1	433379	434329	R	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase	complement(433379..434329)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555626
YP_903634.1	CDS	aspS	NC_008610.1	434336	436087	R	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase	complement(434336..436087)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555627
YP_903635.1	CDS	Rmag_0397	NC_008610.1	436092	436694	R	PFAM: protein of unknown function DUF502; KEGG: mfa:Mfla_2385 protein of unknown function DUF502; hypothetical protein	complement(436092..436694)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555628
YP_903636.1	CDS	Rmag_0398	NC_008610.1	436749	437525	R	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: lpp:lpp1684 methionyl aminopeptidase; methionine aminopeptidase, type I	complement(436749..437525)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555629
YP_903637.1	CDS	Rmag_0399	NC_008610.1	437525	438550	R	PFAM: peptidase M48, Ste24p; KEGG: vvy:VVA0973 Zn-dependent protease with chaperone function; peptidase M48, Ste24p	complement(437525..438550)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555630
YP_903638.1	CDS	Rmag_0400	NC_008610.1	438696	439304	R	PFAM: LemA family protein; KEGG: sde:Sde_3150 divalent cation transporter; LemA family protein	complement(438696..439304)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555631
YP_903639.1	CDS	Rmag_0404	NC_008610.1	443731	444399	R	KEGG: lpp:lpp1339 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III, epsilon subunit	complement(443731..444399)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555632
YP_903640.1	CDS	Rmag_0405	NC_008610.1	444470	444709	D	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: psp:PSPPH_0198 DNA-directed RNA polymerase omega chain (RNAP omegasubunit) (transcriptase omega chain) (RNA polymerase omega subunit); DNA-directed RNA polymerase, omega subunit	444470..444709	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555633
YP_903641.1	CDS	Rmag_0408	NC_008610.1	446690	446950	R	hypothetical protein	complement(446690..446950)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555634
YP_903642.1	CDS	Rmag_0409	NC_008610.1	446938	447924	R	catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase	complement(446938..447924)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555635
YP_903643.1	CDS	Rmag_0410	NC_008610.1	447965	449833	D	required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC	447965..449833	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555636
YP_903644.1	CDS	Rmag_0411	NC_008610.1	450077	451333	R	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: plu:plu4854 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein	complement(450077..451333)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555637
YP_903645.1	CDS	Rmag_0412	NC_008610.1	451387	452394	D	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: lpp:lpp2702 hypothetical protein; small GTP-binding protein	451387..452394	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555638
YP_903646.1	CDS	Rmag_0413	NC_008610.1	452387	453157	D	KEGG: tcx:Tcr_0344 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase	452387..453157	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555639
YP_903647.1	CDS	Rmag_0414	NC_008610.1	453151	453624	D	KEGG: hit:NTHI0077 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	453151..453624	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555640
YP_903648.1	CDS	panB	NC_008610.1	453621	454403	D	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase	453621..454403	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555641
YP_903649.1	CDS	panC	NC_008610.1	454403	455239	D	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase	454403..455239	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555642
YP_903650.1	CDS	Rmag_0417	NC_008610.1	455242	455820	D	PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: hch:HCH_02543 thioredoxin-like protein; NifU domain-containing protein	455242..455820	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555643
YP_903651.1	CDS	Rmag_0418	NC_008610.1	455872	456381	D	KEGG: tcx:Tcr_0164 hypothetical protein; hypothetical protein	455872..456381	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555644
YP_903652.1	CDS	Rmag_0419	NC_008610.1	456381	457310	D	TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: hit:NTHI1618 thiamine-monophosphate kinase; thiamine-monophosphate kinase	456381..457310	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555216
YP_903653.1	CDS	Rmag_0420	NC_008610.1	457348	457758	R	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: aci:ACIAD0273 DnaK suppressor protein; TraR/DksA family transcriptional regulator	complement(457348..457758)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555217
YP_903654.1	CDS	Rmag_0421	NC_008610.1	457849	458610	D	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr_1242 HAD-superfamily hydrolase subfamily IA, variant 3; HAD family hydrolase	457849..458610	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555218
YP_903655.1	CDS	Rmag_0423	NC_008610.1	460425	461705	D	TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cbu:CBU_1200 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase (NADP)	460425..461705	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555219
YP_903656.1	CDS	Rmag_0424	NC_008610.1	462345	462869	D	KEGG: pfa:PF14_0644 hypothetical protein; hypothetical protein	462345..462869	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555220
YP_903657.1	CDS	Rmag_0425	NC_008610.1	463180	464358	R	PFAM: aminotransferase, class I and II; KEGG: hch:HCH_04972 aspartate/tyrosine/aromatic aminotransferase; aminotransferase	complement(463180..464358)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555221
YP_903658.1	CDS	Rmag_0426	NC_008610.1	464419	466413	D	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B	464419..466413	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555222
YP_903659.1	CDS	Rmag_0427	NC_008610.1	466410	467051	D	PFAM: Radical SAM domain protein; KEGG: mfa:Mfla_2336 radical SAM; radical SAM domain-containing protein	466410..467051	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555223
YP_903660.1	CDS	Rmag_0428	NC_008610.1	467052	467540	R	PFAM: heat shock protein Hsp20; KEGG: rfe:RF_1004 small heat shock protein; heat shock protein Hsp20	complement(467052..467540)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555224
YP_903661.1	CDS	Rmag_0430	NC_008610.1	468744	469841	R	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase	complement(468744..469841)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555225
YP_903662.1	CDS	Rmag_0432	NC_008610.1	470704	471399	D	KEGG: mca:MCA1094 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine-5'-phosphate decarboxylase	470704..471399	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555226
YP_903663.1	CDS	Rmag_0433	NC_008610.1	472435	473628	D	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: ngo:NGO1678 hypothetical protein; hypothetical protein	472435..473628	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555227
YP_903664.1	CDS	Rmag_0434	NC_008610.1	473628	474266	D	KEGG: tcx:Tcr_1992 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase	473628..474266	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555228
YP_903665.1	CDS	aroE	NC_008610.1	474255	475058	R	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase	complement(474255..475058)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555229
YP_903666.1	CDS	Rmag_0436	NC_008610.1	475090	476844	R	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: tcx:Tcr_0703 ribonuclease, Rne/Rng family; ribonuclease	complement(475090..476844)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555230
YP_903667.1	CDS	Rmag_0437	NC_008610.1	477164	477883	R	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nmu:Nmul_A0336 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR	complement(477164..477883)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555231
YP_903668.1	CDS	Rmag_0438	NC_008610.1	477898	478992	D	PFAM: protein of unknown function DUF185; KEGG: noc:Noc_0037 protein of unknown function DUF185; hypothetical protein	477898..478992	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555232
YP_903669.1	CDS	Rmag_0439	NC_008610.1	479009	479809	D	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase	479009..479809	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555233
YP_903670.1	CDS	pepN	NC_008610.1	480525	483062	D	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site; aminopeptidase N	480525..483062	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555234
YP_903671.1	CDS	Rmag_0441	NC_008610.1	483059	483517	D	PFAM: CinA domain protein; KEGG: reu:Reut_A2850 CinA, C-terminal; CinA domain-containing protein	483059..483517	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555605
YP_903672.1	CDS	Rmag_0442	NC_008610.1	483504	484472	D	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: noc:Noc_2960 dihydrouridine synthase TIM-barrel protein YjbN; tRNA-dihydrouridine synthase A	483504..484472	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555606
YP_903673.1	CDS	Rmag_0443	NC_008610.1	484462	485682	D	PFAM: cell division protein FtsA; KEGG: mca:MCA2424 cell division protein FtsA; cell division protein FtsA	484462..485682	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555607
YP_903674.1	CDS	lpxC	NC_008610.1	485688	486599	D	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	485688..486599	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555608
YP_903675.1	CDS	Rmag_0445	NC_008610.1	486667	488406	D	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: mca:MCA2270 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase, large subunit	486667..488406	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555609
YP_903676.1	CDS	Rmag_0446	NC_008610.1	488403	488879	D	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: dar:Daro_3074 acetolactate synthase, small subunit; acetolactate synthase, small subunit	488403..488879	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555610
YP_903677.1	CDS	Rmag_0447	NC_008610.1	488924	489928	D	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase	488924..489928	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555611
YP_903678.1	CDS	Rmag_0448	NC_008610.1	489981	490727	D	KEGG: tcx:Tcr_0610 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase	489981..490727	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555612
YP_903679.1	CDS	Rmag_0449	NC_008610.1	490882	492417	D	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase	490882..492417	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555613
YP_903680.1	CDS	Rmag_0450	NC_008610.1	492414	492833	D	hypothetical protein	492414..492833	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555614
YP_903681.1	CDS	Rmag_0452	NC_008610.1	493205	494104	R	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase	complement(493205..494104)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555615
YP_903682.1	CDS	Rmag_0453	NC_008610.1	494117	495262	R	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase	complement(494117..495262)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555616
YP_903683.1	CDS	Rmag_0454	NC_008610.1	495702	495998	D	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein; SSU ribosomal protein S30P / sigma 54 modulation protein	495702..495998	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555617
YP_903684.1	CDS	Rmag_0455	NC_008610.1	496056	497408	D	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: hch:HCH_05326 magnesium transporter; magnesium transporter	496056..497408	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555618
YP_903685.1	CDS	Rmag_0456	NC_008610.1	497533	498948	R	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: noc:Noc_2994 phosphomannomutase; phosphomannomutase	complement(497533..498948)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555619
YP_903686.1	CDS	Rmag_0457	NC_008610.1	498962	499339	D	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: eca:ECA3281 sigma-E factor regulatory protein; positive regulator of sigma E, RseC/MucC	498962..499339	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555620
YP_903687.1	CDS	aceE	NC_008610.1	499445	502096	D	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1	499445..502096	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555621
YP_903688.1	CDS	Rmag_0460	NC_008610.1	502426	502749	R	hypothetical protein	complement(502426..502749)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555622
YP_903689.1	CDS	Rmag_0461	NC_008610.1	503211	505298	R	KEGG: hch:HCH_01244 polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase	complement(503211..505298)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555623
YP_903690.1	CDS	Rmag_0462	NC_008610.1	507070	508530	R	KEGG: mca:MCA0291 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD; inosine-5'-monophosphate dehydrogenase	complement(507070..508530)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555624
YP_903691.1	CDS	Rmag_0463	NC_008610.1	508530	509180	R	PFAM: SH3, type 3 domain protein; KEGG: tcx:Tcr_1504 SH3-like region; SH3 type 3 domain-containing protein	complement(508530..509180)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554789
YP_903692.1	CDS	Rmag_0464	NC_008610.1	509177	511924	R	TIGRFAM: valyl-tRNA synthetase; KEGG: tcx:Tcr_1503 valyl-tRNA synthetase; valyl-tRNA synthetase	complement(509177..511924)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554790
YP_903693.1	CDS	Rmag_0466	NC_008610.1	512915	514504	R	KEGG: neu:NE0433 DNA polymerase III (subunits tau and gamma) protein; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III, subunits gamma and tau	complement(512915..514504)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554791
YP_903694.1	CDS	Rmag_0467	NC_008610.1	514646	515320	R	PFAM: Nucleotidyl transferase; KEGG: pha:PSHAa2630 mannose-1-phosphate guanyltransferase-related protein; nucleotidyl transferase	complement(514646..515320)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554792
YP_903695.1	CDS	Rmag_0468	NC_008610.1	515308	516252	R	PFAM: aminoglycoside phosphotransferase; KEGG: neu:NE0191 domain of unknown function DUF227; aminoglycoside phosphotransferase	complement(515308..516252)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554793
YP_903696.1	CDS	Rmag_0469	NC_008610.1	516245	517078	R	PFAM: aminotransferase, class IV; KEGG: noc:Noc_2631 D-alanine transaminase; branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase	complement(516245..517078)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554794
YP_903697.1	CDS	Rmag_0470	NC_008610.1	517078	518205	R	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: lpf:lpl1517 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase	complement(517078..518205)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554795
YP_903698.1	CDS	Rmag_0471	NC_008610.1	519001	520140	R	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: ppr:PBPRA2891 putative rod shape-determining protein RodA; rod shape-determining protein RodA	complement(519001..520140)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554796
YP_903699.1	CDS	Rmag_0472	NC_008610.1	520137	520499	R	PFAM: protein of unknown function DUF498; KEGG: cvi:CV0994 hypothetical protein; hypothetical protein	complement(520137..520499)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554797
YP_903700.1	CDS	Rmag_0473	NC_008610.1	520579	521028	D	PFAM: Sel1 domain protein repeat-containing protein; KEGG: hit:NTHI1567 hypothetical protein; Sel1 domain-containing protein	520579..521028	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554798
YP_903701.1	CDS	gltX	NC_008610.1	521034	522398	D	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase	521034..522398	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554799
YP_903702.1	CDS	Rmag_0475	NC_008610.1	522436	524955	D	KEGG: pae:PA3658 protein-PII uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD	522436..524955	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554800
YP_903703.1	CDS	Rmag_0476	NC_008610.1	525051	525377	D	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: ppr:PBPRA3541 putative thioredoxin; thioredoxin	525051..525377	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554801
YP_903704.1	CDS	rho	NC_008610.1	525485	526759	D	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho	525485..526759	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554802
YP_903705.1	CDS	Rmag_0478	NC_008610.1	526972	528087	D	PFAM: permease YjgP/YjgQ family protein; KEGG: mfa:Mfla_0221 permease YjgP/YjgQ; permease YjgP/YjgQ family protein	526972..528087	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554803
YP_903706.1	CDS	Rmag_0479	NC_008610.1	528138	528524	D	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase	528138..528524	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554804
YP_903707.1	CDS	Rmag_0480	NC_008610.1	528545	529684	D	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: tcx:Tcr_1528 poly(A) polymerase; poly(A) polymerase	528545..529684	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554805
YP_903708.1	CDS	Rmag_0481	NC_008610.1	530326	530550	D	catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit	530326..530550	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554806
YP_903709.1	CDS	Rmag_0482	NC_008610.1	530600	531454	D	PFAM: Polyprenyl synthetase; KEGG: pfo:Pfl_5006 polyprenyl synthetase; farnesyl-diphosphate synthase	530600..531454	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554807
YP_903710.1	CDS	Rmag_0483	NC_008610.1	531451	532395	R	KEGG: nme:NMB1916 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-[acyl-carrier-protein] synthase III	complement(531451..532395)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555108
YP_903711.1	CDS	Rmag_0484	NC_008610.1	532388	533407	R	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX	complement(532388..533407)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555109
YP_903712.1	CDS	rpmF	NC_008610.1	533413	533610	R	some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32	complement(533413..533610)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555110
YP_903713.1	CDS	Rmag_0486	NC_008610.1	533627	534127	R	PFAM: protein of unknown function DUF177; KEGG: yps:YPTB2476 hypothetical protein; hypothetical protein	complement(533627..534127)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555111
YP_903714.1	CDS	Rmag_0487	NC_008610.1	534851	535552	R	PFAM: phospholipid/glycerol acyltransferase; KEGG: mfa:Mfla_0642 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase	complement(534851..535552)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555112
YP_903715.1	CDS	Rmag_0488	NC_008610.1	535618	536253	D	KEGG: sde:Sde_2151 flagellar FliJ and related; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase	535618..536253	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555113
YP_903716.1	CDS	Rmag_0489	NC_008610.1	536253	537389	D	PFAM: protein of unknown function DUF195; KEGG: wsu:WS1465 hypothetical protein; hypothetical protein	536253..537389	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555114
YP_903717.1	CDS	Rmag_0490	NC_008610.1	537389	538141	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: vfi:VF1039 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR	537389..538141	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555115
YP_903718.1	CDS	Rmag_0491	NC_008610.1	538163	538963	R	PFAM: inositol monophosphatase; KEGG: eba:ebA6410 inositol monophosphatase (extragenic suppressor protein); inositol monophosphatase	complement(538163..538963)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555116
YP_903719.1	CDS	Rmag_0492	NC_008610.1	538989	539720	D	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tcx:Tcr_0615 RNA methyltransferase TrmH, group 1; RNA methyltransferase	538989..539720	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555117
YP_903720.1	CDS	Rmag_0493	NC_008610.1	539762	541612	R	molecular chaperone; heat shock protein 90	complement(539762..541612)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555118
YP_903721.1	CDS	Rmag_0495	NC_008610.1	541961	542497	D	PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: cps:CPS_0027 putative RNA-binding protein; translation factor SUA5	541961..542497	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555119
YP_903722.1	CDS	Rmag_0496	NC_008610.1	542494	543402	D	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase	542494..543402	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555120
YP_903723.1	CDS	Rmag_0497	NC_008610.1	543415	543639	D	PFAM: SirA family protein; KEGG: noc:Noc_2653 SirA-like protein; SirA family protein	543415..543639	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555121
YP_903724.1	CDS	Rmag_0498	NC_008610.1	543750	545165	D	KEGG: mca:MCA1677 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase	543750..545165	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555122
YP_903725.1	CDS	Rmag_0499	NC_008610.1	545262	546230	D	KEGG: ilo:IL1324 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase	545262..546230	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555123
YP_903726.1	CDS	Rmag_0500	NC_008610.1	546193	547209	R	KEGG: pst:PSPTO4408 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	complement(546193..547209)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555124
YP_903727.1	CDS	Rmag_0501	NC_008610.1	547202	548335	R	PFAM: cell cycle protein; KEGG: lpp:lpp2668 cell division protein FtsW; cell cycle protein	complement(547202..548335)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555125
YP_903728.1	CDS	Rmag_0502	NC_008610.1	548464	550077	D	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tcx:Tcr_1606 ABC transporter related; ABC transporter related	548464..550077	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555126
YP_903729.1	CDS	Rmag_0504	NC_008610.1	551174	551752	D	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha	551174..551752	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555127
YP_903730.1	CDS	Rmag_0505	NC_008610.1	551762	552835	D	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: tcx:Tcr_1398 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase	551762..552835	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554634
YP_903731.1	CDS	Rmag_0506	NC_008610.1	552846	553349	D	PFAM: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: fnu:FN1505 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase	552846..553349	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554635
YP_903732.1	CDS	Rmag_0507	NC_008610.1	553352	553774	D	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: yps:YPTB0936 transcription termination; L factor; NusB antitermination factor	553352..553774	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554636
YP_903733.1	CDS	Rmag_0508	NC_008610.1	554198	554566	D	hypothetical protein	554198..554566	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554637
YP_903734.1	CDS	Rmag_0509	NC_008610.1	554952	555344	D	PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1209 histidine triad (HIT) protein; histidine triad (HIT) protein	554952..555344	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554638
YP_903735.1	CDS	Rmag_0510	NC_008610.1	555356	555847	R	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: stt:t4237 single strand binding protein; single-strand binding protein	complement(555356..555847)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554639
YP_903736.1	CDS	Rmag_0511	NC_008610.1	555862	557037	R	PFAM: major facilitator superfamily MFS_1; KEGG: tcx:Tcr_0326 major facilitator superfamily MFS_1; major facilitator transporter	complement(555862..557037)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554640
YP_903737.1	CDS	Rmag_0512	NC_008610.1	557062	557823	R	KEGG: noc:Noc_0716 probable transmembrane protein; putative transmembrane protein	complement(557062..557823)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554641
YP_903738.1	CDS	Rmag_0513	NC_008610.1	557921	560023	D	KEGG: tcx:Tcr_2144 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I, SpoT/RelA	557921..560023	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554642
YP_903739.1	CDS	Rmag_0514	NC_008610.1	560102	560296	D	PFAM: protein of unknown function DUF528; KEGG: bur:Bcep18194_A5426 protein of unknown function DUF528; hypothetical protein	560102..560296	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554643
YP_903740.1	CDS	Rmag_0515	NC_008610.1	560293	561567	D	PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; KEGG: noc:Noc_0145 TolB; TolB domain-containing protein	560293..561567	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554644
YP_903741.1	CDS	Rmag_0516	NC_008610.1	561578	562150	D	PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0146 OmpA/MotB; OmpA/MotB domain-containing protein	561578..562150	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554645
YP_903742.1	CDS	Rmag_0517	NC_008610.1	562157	562825	D	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: psp:PSPPH_3765 hypothetical protein; TPR repeat-containing protein	562157..562825	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554646
YP_903743.1	CDS	Rmag_0518	NC_008610.1	562828	564117	D	PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: tcx:Tcr_0715 anthranilate synthase; hypothetical protein	562828..564117	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554647
YP_903744.1	CDS	Rmag_0519	NC_008610.1	564419	565042	R	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: cps:CPS_1844 conserved hypothetical protein TIGR00427; multiple antibiotic resistance (MarC)-related proteins	complement(564419..565042)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554648
YP_903745.1	CDS	Rmag_0520	NC_008610.1	565433	567313	R	KEGG: tcx:Tcr_1372 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; ExsB family protein; NAD+ synthetase	complement(565433..567313)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554649
YP_903746.1	CDS	Rmag_0521	NC_008610.1	567633	568058	D	KEGG: mhu:Mhun_1900 putative transcriptional regulator; hypothetical protein	567633..568058	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554650
YP_903747.1	CDS	Rmag_0522	NC_008610.1	568082	569077	D	PFAM: ferrochelatase; KEGG: tcx:Tcr_1864 ferrochelatase; ferrochelatase	568082..569077	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554651
YP_903748.1	CDS	Rmag_0523	NC_008610.1	569353	571626	D	Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha	569353..571626	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554652
YP_903749.1	CDS	nrdB	NC_008610.1	571709	572845	D	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta	571709..572845	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555293
YP_903750.1	CDS	Rmag_0525	NC_008610.1	572854	573117	D	PFAM: ferredoxin; KEGG: sgl:SG1586 hypothetical protein; ferredoxin	572854..573117	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555294
YP_903751.1	CDS	Rmag_0526	NC_008610.1	573467	574141	R	KEGG: tdn:Tmden_0484 putative dUTPase; putative dUTPase	complement(573467..574141)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555295
YP_903752.1	CDS	Rmag_0527	NC_008610.1	574556	575143	R	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T	complement(574556..575143)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555296
YP_903753.1	CDS	Rmag_0528	NC_008610.1	575133	575555	R	PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_A2066 amino-acid N-acetyltransferase (ArgA); GCN5-related N-acetyltransferase	complement(575133..575555)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555297
YP_903754.1	CDS	Rmag_0529	NC_008610.1	575616	577295	D	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase	575616..577295	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555298
YP_903755.1	CDS	Rmag_0530	NC_008610.1	577629	579746	R	KEGG: mfa:Mfla_1626 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R	complement(577629..579746)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555299
YP_903756.1	CDS	Rmag_0531	NC_008610.1	579751	581067	R	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase	complement(579751..581067)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555300
YP_903757.1	CDS	Rmag_0532	NC_008610.1	581125	582081	R	KEGG: tbd:Tbd_0606 ATP phosphoribosyltransferase regulatory subunit; ATP phosphoribosyltransferase regulatory subunit	complement(581125..582081)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555301
YP_903758.1	CDS	Rmag_0533	NC_008610.1	582087	582944	R	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: tcx:Tcr_1091 HflC protein; HflC protein	complement(582087..582944)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555302
YP_903759.1	CDS	Rmag_0534	NC_008610.1	582944	584095	R	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: tcx:Tcr_1090 HflK protein; HflK protein	complement(582944..584095)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555303
YP_903760.1	CDS	Rmag_0535	NC_008610.1	584160	586427	D	PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: rso:RSc0515 probable organic solvent tolerance transmembrane protein; organic solvent tolerance protein	584160..586427	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555304
YP_903761.1	CDS	Rmag_0536	NC_008610.1	586429	587325	D	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: lpn:lpg0298 peptidyl-prolyl cis-trans isomerase D (SurA); PpiC-type peptidyl-prolyl cis-trans isomerase	586429..587325	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555305
YP_903762.1	CDS	Rmag_0537	NC_008610.1	587326	588069	D	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: eca:ECA3621 probable tRNA/rRNA methyltransferase; RNA methyltransferase	587326..588069	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555306
YP_903763.1	CDS	Rmag_0538	NC_008610.1	588492	589796	D	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: son:SO1484 isocitrate lyase; isocitrate lyase	588492..589796	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555307
YP_903764.1	CDS	Rmag_0541	NC_008610.1	592398	592676	D	PFAM: protein of unknown function DUF493; KEGG: neu:NE1487 hypothetical protein; hypothetical protein	592398..592676	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555308
YP_903765.1	CDS	lipB	NC_008610.1	592683	593297	D	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B	592683..593297	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555309
YP_903766.1	CDS	Rmag_0543	NC_008610.1	593275	594222	D	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase	593275..594222	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555310
YP_903767.1	CDS	Rmag_0544	NC_008610.1	594313	597717	R	PFAM: acriflavin resistance protein; KEGG: gme:Gmet_3127 acriflavin resistance protein; acriflavin resistance protein	complement(594313..597717)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555311
YP_903768.1	CDS	Rmag_0545	NC_008610.1	597725	598900	R	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pha:PSHAa2832 multidrug efflux system (AcrA/AcrE); RND family efflux transporter MFP subunit	complement(597725..598900)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555312
YP_903769.1	CDS	Rmag_0546	NC_008610.1	599097	600095	D	KEGG: sde:Sde_0738 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase	599097..600095	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555070
YP_903770.1	CDS	Rmag_0547	NC_008610.1	600088	600840	D	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: pfo:Pfl_5135 16S rRNA dimethylase; dimethyladenosine transferase	600088..600840	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555071
YP_903771.1	CDS	apaG	NC_008610.1	600824	601195	D	protein associated with Co2+ and Mg2+ efflux; ApaG	600824..601195	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555072
YP_903772.1	CDS	apaH	NC_008610.1	601195	601992	D	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase	601195..601992	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555073
YP_903773.1	CDS	dapF	NC_008610.1	601989	602804	R	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase	complement(601989..602804)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555074
YP_903774.1	CDS	Rmag_0551	NC_008610.1	602892	603245	D	PFAM: protein of unknown function DUF971; KEGG: eba:ebB94 hypothetical protein; hypothetical protein	602892..603245	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555075
YP_903775.1	CDS	Rmag_0552	NC_008610.1	603252	604589	D	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: neu:NE1711 membrane-associated Zn-dependent proteases 1; putative membrane-associated zinc metalloprotease	603252..604589	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555076
YP_903776.1	CDS	Rmag_0553	NC_008610.1	604593	606881	D	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: eba:ebA5996 probable outer membrane protein/surface antigen; surface antigen (D15)	604593..606881	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555077
YP_903777.1	CDS	Rmag_0554	NC_008610.1	606924	607922	D	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: ftl:FTL_0537 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	606924..607922	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555078
YP_903778.1	CDS	fabZ	NC_008610.1	607924	608367	D	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase	607924..608367	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555079
YP_903779.1	CDS	Rmag_0556	NC_008610.1	608391	609182	D	TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: pae:PA3644 UDP-N-acetylglucosamine acyltransferase; acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	608391..609182	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555080
YP_903780.1	CDS	Rmag_0557	NC_008610.1	609242	610729	D	TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: tcx:Tcr_0493 integral membrane protein MviN; integral membrane protein MviN	609242..610729	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555081
YP_903781.1	CDS	Rmag_0558	NC_008610.1	610726	610995	D	PFAM: Fe(II) trafficking protein YggX; KEGG: dar:Daro_3583 hypothetical protein; hypothetical protein	610726..610995	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555082
YP_903782.1	CDS	gmk	NC_008610.1	610988	611599	D	Essential for recycling GMP and indirectly, cGMP; guanylate kinase	610988..611599	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555083
YP_903783.1	CDS	Rmag_0560	NC_008610.1	611648	612490	D	TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: ilo:IL0229 DNA-directed RNA polymerase sigma 32 subunit; RNA polymerase, sigma 32 subunit, RpoH	611648..612490	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555084
YP_903784.1	CDS	groES	NC_008610.1	612560	612847	D	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES	612560..612847	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555085
YP_903785.1	CDS	groEL	NC_008610.1	612860	614494	D	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL	612860..614494	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555086
YP_903786.1	CDS	Rmag_0563	NC_008610.1	614731	616614	D	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B	614731..616614	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555087
YP_903787.1	CDS	Rmag_0564	NC_008610.1	616607	617299	D	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cbu:CBU_2083 ExsB protein; exsB protein	616607..617299	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555088
YP_903788.1	CDS	acpP	NC_008610.1	617405	617632	D	carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein	617405..617632	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555440
YP_903789.1	CDS	Rmag_0566	NC_008610.1	617710	618948	D	PFAM: beta-ketoacyl synthase; KEGG: bxe:Bxe_A1076 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-[acyl-carrier-protein] synthase II	617710..618948	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555441
YP_903790.1	CDS	Rmag_0567	NC_008610.1	618998	619201	R	hypothetical protein	complement(618998..619201)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555442
YP_903791.1	CDS	Rmag_0568	NC_008610.1	619225	621135	R	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pha:PSHAa0361 oligopeptidase A; oligopeptidase A	complement(619225..621135)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555443
YP_903792.1	CDS	Rmag_0570	NC_008610.1	621606	623258	R	TIGRFAM: methionyl-tRNA synthetase; KEGG: vfi:VF1754 methionyl-tRNA synthetase; methionyl-tRNA synthetase	complement(621606..623258)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555444
YP_903793.1	CDS	Rmag_0571	NC_008610.1	623343	624425	D	PFAM: protein of unknown function DUF59; KEGG: tbd:Tbd_2108 ATP-binding protein involved in chromosome partitioning; hypothetical protein	623343..624425	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555445
YP_903794.1	CDS	Rmag_0572	NC_008610.1	625471	625809	R	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: reu:Reut_A1064 ferredoxin, 2Fe-2S type; ferredoxin, 2Fe-2S type, ISC system	complement(625471..625809)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555446
YP_903795.1	CDS	hscA	NC_008610.1	625833	627677	R	involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA	complement(625833..627677)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555447
YP_903796.1	CDS	Rmag_0574	NC_008610.1	627693	628208	R	TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: sdy:SDY_2723 hypothetical protein; co-chaperone Hsc20	complement(627693..628208)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555448
YP_903797.1	CDS	Rmag_0575	NC_008610.1	628221	628544	R	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: vvy:VV0757 hypothetical protein; iron-sulfur cluster assembly protein IscA	complement(628221..628544)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555449
YP_903798.1	CDS	Rmag_0576	NC_008610.1	628551	628928	R	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: par:Psyc_1478 nitrogen-fixing NifU-like; scaffold protein	complement(628551..628928)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555450
YP_903799.1	CDS	Rmag_0577	NC_008610.1	628988	630202	R	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase	complement(628988..630202)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555451
YP_903800.1	CDS	Rmag_0578	NC_008610.1	630205	630624	R	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tcx:Tcr_0617 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator	complement(630205..630624)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555452
YP_903801.1	CDS	Rmag_0579	NC_008610.1	630710	631408	R	TIGRFAM: serine O-acetyltransferase; KEGG: tcx:Tcr_0616 serine O-acetyltransferase; serine O-acetyltransferase	complement(630710..631408)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555453
YP_903802.1	CDS	Rmag_0580	NC_008610.1	631473	632279	R	PFAM: lipid A biosynthesis acyltransferase; KEGG: tcx:Tcr_0183 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase	complement(631473..632279)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555454
YP_903803.1	CDS	Rmag_0581	NC_008610.1	632305	633096	R	PFAM: PP-loop domain protein; KEGG: tcx:Tcr_0182 PP-loop; PP-loop domain-containing protein	complement(632305..633096)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555455
YP_903804.1	CDS	Rmag_0582	NC_008610.1	633947	635338	R	KEGG: bfr:BF4142 outer membrane efflux protein; Outer membrane protein-like	complement(633947..635338)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555456
YP_903805.1	CDS	Rmag_0583	NC_008610.1	635335	635856	R	PFAM: shikimate kinase; KEGG: csa:Csal_0613 shikimate kinase; shikimate kinase	complement(635335..635856)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555457
YP_903806.1	CDS	Rmag_0584	NC_008610.1	636053	636982	R	TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: hch:HCH_01045 branched-chain amino acid aminotransferase; branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / branched chain amino acid aminotransferase	complement(636053..636982)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555458
YP_903807.1	CDS	Rmag_0585	NC_008610.1	636985	638208	R	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase	complement(636985..638208)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555459
YP_903808.1	CDS	Rmag_0586	NC_008610.1	640785	641027	R	hypothetical protein	complement(640785..641027)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554952
YP_903809.1	CDS	Rmag_0587	NC_008610.1	641235	642485	D	PFAM: peptidase M48, Ste24p; KEGG: neu:NE0076 peptidase family M48; Ste24 endopeptidase	641235..642485	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554953
YP_903810.1	CDS	Rmag_0588	NC_008610.1	642520	642798	D	KEGG: dar:Daro_3003 hypothetical protein; hypothetical protein	642520..642798	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554954
YP_903811.1	CDS	Rmag_0589	NC_008610.1	642817	643773	D	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: hch:HCH_05392 predicted GTPase; ribosome small subunit-dependent GTPase A	642817..643773	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554955
YP_903812.1	CDS	Rmag_0590	NC_008610.1	644316	644624	R	PFAM: protein of unknown function DUF423; KEGG: oih:OB3027 hypothetical protein; hypothetical protein	complement(644316..644624)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554956
YP_903813.1	CDS	Rmag_0591	NC_008610.1	645635	645940	R	PFAM: histone family protein DNA-binding protein; KEGG: aba:Acid345_4105 histone-like DNA-binding protein; histone family protein DNA-binding protein	complement(645635..645940)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554957
YP_903814.1	CDS	rpsA	NC_008610.1	645961	647637	R	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1	complement(645961..647637)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554958
YP_903815.1	CDS	Rmag_0593	NC_008610.1	647733	648410	R	KEGG: hch:HCH_04979 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase	complement(647733..648410)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554959
YP_903816.1	CDS	Rmag_0594	NC_008610.1	648690	650183	R	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: tcx:Tcr_0726 lysyl-tRNA synthetase; lysyl-tRNA synthetase	complement(648690..650183)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554960
YP_903817.1	CDS	Rmag_0595	NC_008610.1	650622	651059	R	PFAM: cytochrome C biogenesis protein; KEGG: rme:Rmet_2392 cytochrome c biogenesis protein; cytochrome C biogenesis protein	complement(650622..651059)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554961
YP_903818.1	CDS	Rmag_0596	NC_008610.1	651095	652942	D	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vvu:VV12632 ATPase component of ABC transporter with duplicated ATPase domains; ABC transporter related	651095..652942	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554962
YP_903819.1	CDS	Rmag_0597	NC_008610.1	652939	653568	D	KEGG: bms:BRA0855 hypothetical protein; hypothetical protein	652939..653568	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554963
YP_903820.1	CDS	Rmag_0598	NC_008610.1	653849	655633	R	TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: plu:plu2027 excinuclease ABC subunit C; excinuclease ABC subunit C	complement(653849..655633)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554964
YP_903821.1	CDS	Rmag_0599	NC_008610.1	655761	656345	D	PFAM: toluene tolerance family protein; KEGG: neu:NE2381 putative signal peptide protein; toluene tolerance family protein	655761..656345	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554965
YP_903822.1	CDS	Rmag_0600	NC_008610.1	656345	657604	D	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase	656345..657604	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554966
YP_903823.1	CDS	hisG	NC_008610.1	657610	658227	D	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit	657610..658227	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554967
YP_903824.1	CDS	hisD	NC_008610.1	658224	659531	D	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase	658224..659531	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554968
YP_903825.1	CDS	Rmag_0604	NC_008610.1	660101	661495	R	KEGG: tcx:Tcr_0998 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54)	complement(660101..661495)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554969
YP_903826.1	CDS	Rmag_0605	NC_008610.1	661558	662343	D	PFAM: cytochrome c assembly protein; KEGG: mca:MCA1337 hypothetical protein; cytochrome c assembly protein	661558..662343	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554970
YP_903827.1	CDS	Rmag_0606	NC_008610.1	662388	664175	R	binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA	complement(662388..664175)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554848
YP_903828.1	CDS	Rmag_0607	NC_008610.1	664217	664666	D	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: csa:Csal_2817 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen	664217..664666	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554849
YP_903829.1	CDS	Rmag_0608	NC_008610.1	664663	665367	D	KEGG: psp:PSPPH_3670 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; 3-demethylubiquinone-9 3-methyltransferase	664663..665367	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554850
YP_903830.1	CDS	Rmag_0609	NC_008610.1	665379	665687	D	hypothetical protein	665379..665687	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554851
YP_903831.1	CDS	Rmag_0610	NC_008610.1	665684	666067	R	KEGG: mfa:Mfla_1012 phosphopantethiene--protein transferase domain; TIGRFAM: holo-acyl-carrier-protein synthase; Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; holo-acyl-carrier-protein synthase	complement(665684..666067)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554852
YP_903832.1	CDS	Rmag_0611	NC_008610.1	666064	666789	R	involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase	complement(666064..666789)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554853
YP_903833.1	CDS	Rmag_0613	NC_008610.1	667455	668381	R	TIGRFAM: small GTP-binding protein; GTP-binding; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: tcx:Tcr_0735 GTP-binding protein Era; GTP-binding protein Era	complement(667455..668381)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554854
YP_903834.1	CDS	Rmag_0614	NC_008610.1	668378	669043	R	PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: vfi:VF2087 ribonuclease III; ribonuclease III	complement(668378..669043)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554855
YP_903835.1	CDS	Rmag_0615	NC_008610.1	669120	669782	D	KEGG: tbd:Tbd_2487 hypothetical protein; hypothetical protein	669120..669782	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554856
YP_903836.1	CDS	thyA	NC_008610.1	670751	671545	R	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase	complement(670751..671545)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554857
YP_903837.1	CDS	Rmag_0617	NC_008610.1	671542	672321	R	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: noc:Noc_0233 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase	complement(671542..672321)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554858
YP_903838.1	CDS	Rmag_0618	NC_008610.1	672441	672746	R	PFAM: regulatory protein, ArsR; KEGG: tcx:Tcr_1782 transcriptional regulator, ArsR family; ArsR family transcriptional regulator	complement(672441..672746)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554859
YP_903839.1	CDS	Rmag_0619	NC_008610.1	672775	673356	R	hypothetical protein	complement(672775..673356)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554860
YP_903840.1	CDS	Rmag_0620	NC_008610.1	673448	674800	D	KEGG: hch:HCH_01350 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease	673448..674800	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554861
YP_903841.1	CDS	Rmag_0621	NC_008610.1	675432	676316	R	KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I	complement(675432..676316)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554862
YP_903842.1	CDS	Rmag_0622	NC_008610.1	676385	676711	D	PFAM: DsrC family protein; KEGG: buc:BU467 putative sulfite reductase; DsrC family protein	676385..676711	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554863
YP_903843.1	CDS	Rmag_0623	NC_008610.1	677358	678665	R	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase	complement(677358..678665)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554864
YP_903844.1	CDS	Rmag_0624	NC_008610.1	678672	679526	R	PFAM: Prephenate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: tcx:Tcr_1195 prephenate dehydrogenase; prephenate dehydrogenase	complement(678672..679526)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554865
YP_903845.1	CDS	Rmag_0625	NC_008610.1	679523	680587	R	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: ilo:IL1358 histidinol-phosphate/aromatic aminotransferase; aminotransferase	complement(679523..680587)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554866
YP_903846.1	CDS	Rmag_0626	NC_008610.1	680691	681770	R	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: csa:Csal_2166 chorismate mutase; chorismate mutase	complement(680691..681770)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554867
YP_903847.1	CDS	Rmag_0627	NC_008610.1	681781	682938	R	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: noc:Noc_0173 D-isomer specific 2-hydroxyacid dehydrogenase; D-3-phosphoglycerate dehydrogenase	complement(681781..682938)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555197
YP_903848.1	CDS	Rmag_0628	NC_008610.1	682938	684017	R	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase	complement(682938..684017)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555198
YP_903849.1	CDS	Rmag_0631	NC_008610.1	685451	685900	R	TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: cbu:CBU_1418 conserved hypothetical protein TIGR00244; ribonucleotide reductase regulator NrdR-like	complement(685451..685900)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555199
YP_903850.1	CDS	glyA	NC_008610.1	685912	687165	R	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase	complement(685912..687165)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555200
YP_903851.1	CDS	Rmag_0635	NC_008610.1	689034	689780	R	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: pfo:Pfl_4746 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein	complement(689034..689780)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555201
YP_903852.1	CDS	Rmag_0636	NC_008610.1	689777	690268	R	KEGG: pha:PSHAa2274 protein-methionine-S-oxide reductase (peptide Met(O) reductase); TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase	complement(689777..690268)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555202
YP_903853.1	CDS	Rmag_0637	NC_008610.1	690310	691014	D	KEGG: lpp:plpp0108 hypothetical protein; hypothetical protein	690310..691014	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555203
YP_903854.1	CDS	Rmag_0638	NC_008610.1	691087	691326	D	hypothetical protein	691087..691326	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555204
YP_903855.1	CDS	Rmag_0639	NC_008610.1	691323	692405	D	PFAM: protein of unknown function UPF0118; KEGG: tcx:Tcr_1881 hypothetical protein; hypothetical protein	691323..692405	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555205
YP_903856.1	CDS	Rmag_0640	NC_008610.1	692472	692942	D	hypothetical protein	692472..692942	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555206
YP_903857.1	CDS	Rmag_0641	NC_008610.1	693042	693329	R	PFAM: histone family protein DNA-binding protein; KEGG: msu:MS1089 bacterial nucleoid DNA-binding protein; histone family protein DNA-binding protein	complement(693042..693329)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555207
YP_903858.1	CDS	pheT	NC_008610.1	693329	695671	R	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta	complement(693329..695671)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555208
YP_903859.1	CDS	pheS	NC_008610.1	695668	696687	R	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha	complement(695668..696687)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555209
YP_903860.1	CDS	Rmag_0644	NC_008610.1	696696	697172	R	KEGG: tbd:Tbd_0170 outer membrane lipoprotein, putative; hypothetical protein	complement(696696..697172)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555210
YP_903861.1	CDS	rplT	NC_008610.1	697195	697554	R	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20	complement(697195..697554)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555211
YP_903862.1	CDS	rpmI	NC_008610.1	697572	697772	R	PFAM: ribosomal protein L35; KEGG: ilo:IL1397 ribosomal protein L35; 50S ribosomal protein L35	complement(697572..697772)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555212
YP_903863.1	CDS	Rmag_0647	NC_008610.1	697812	698279	R	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: ppu:PP2466 translation initiation factor IF-3; translation initiation factor 3	complement(697812..698279)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555213
YP_903864.1	CDS	thrS	NC_008610.1	698339	700237	R	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase	complement(698339..700237)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555214
YP_903865.1	CDS	Rmag_0649	NC_008610.1	700269	701990	R	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: lpn:lpg1461 single stranded DNA specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ	complement(700269..701990)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555215
YP_903866.1	CDS	Rmag_0650	NC_008610.1	701980	702531	R	KEGG: hch:HCH_00116 hypothetical protein; hypothetical protein	complement(701980..702531)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554586
YP_903867.1	CDS	Rmag_0651	NC_008610.1	702524	703510	R	PFAM: FAD dependent oxidoreductase; KEGG: csa:Csal_0494 glycine oxidase ThiO; FAD dependent oxidoreductase	complement(702524..703510)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554587
YP_903868.1	CDS	lspA	NC_008610.1	703507	703965	R	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase	complement(703507..703965)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554588
YP_903869.1	CDS	Rmag_0654	NC_008610.1	704850	705632	D	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: noc:Noc_1769 short-chain dehydrogenase/reductase SDR; enoyl-[acyl-carrier-protein] reductase [NADH]	704850..705632	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554589
YP_903870.1	CDS	Rmag_0655	NC_008610.1	705797	706198	R	hypothetical protein	complement(705797..706198)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554590
YP_903871.1	CDS	Rmag_0656	NC_008610.1	706427	708274	R	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: tcx:Tcr_1096 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase	complement(706427..708274)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554591
YP_903872.1	CDS	Rmag_0659	NC_008610.1	709564	709983	R	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE	complement(709564..709983)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554592
YP_903873.1	CDS	Rmag_0660	NC_008610.1	709980	710156	R	hypothetical protein	complement(709980..710156)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554593
YP_903874.1	CDS	Rmag_0661	NC_008610.1	710156	710896	R	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: noc:Noc_0946 cytochrome c-type biogenesis protein CcmC; heme exporter protein CcmC	complement(710156..710896)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554594
YP_903875.1	CDS	Rmag_0662	NC_008610.1	710944	711603	R	PFAM: peptidase M22, glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease; peptidase M22, glycoprotease	complement(710944..711603)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554595
YP_903876.1	CDS	Rmag_0663	NC_008610.1	711608	712195	R	PFAM: glycosyl transferase, family 51; KEGG: cps:CPS_4301 penicillin-binding protein; glycosyl transferase family protein	complement(711608..712195)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554596
YP_903877.1	CDS	rpsF	NC_008610.1	712415	712756	D	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6	712415..712756	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554597
YP_903878.1	CDS	rpsR	NC_008610.1	712756	713010	D	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18	712756..713010	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554598
YP_903879.1	CDS	rplI	NC_008610.1	713020	713472	D	in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9	713020..713472	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554599
YP_903880.1	CDS	Rmag_0667	NC_008610.1	713503	714948	D	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: noc:Noc_0223 DnaB helicase; primary replicative DNA helicase	713503..714948	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554600
YP_903881.1	CDS	Rmag_0668	NC_008610.1	714963	716015	D	KEGG: cbu:CBU_0869 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase	714963..716015	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554601
YP_903882.1	CDS	Rmag_0669	NC_008610.1	716012	716716	D	PFAM: metallophosphoesterase; KEGG: cyb:CYB_0131 icc protein; metallophosphoesterase	716012..716716	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554602
YP_903883.1	CDS	Rmag_0670	NC_008610.1	717051	717956	D	PFAM: 5-nucleotidase; KEGG: noc:Noc_1810 5-nucleotidase; 5-nucleotidase	717051..717956	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554603
YP_903884.1	CDS	hisS	NC_008610.1	719593	720861	D	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase	719593..720861	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554604
YP_903885.1	CDS	Rmag_0672	NC_008610.1	720858	721466	D	KEGG: pha:PSHAb0136 puttive membrane-associated protein with TPR-like domain; TPR-like domain-containing protein	720858..721466	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554605
YP_903886.1	CDS	engA	NC_008610.1	721472	722869	D	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA	721472..722869	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555274
YP_903887.2	CDS	pyrG	NC_008610.1	723517	725154	R	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase	complement(723517..725154)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555275
YP_903888.1	CDS	Rmag_0676	NC_008610.1	728199	729926	D	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_2507 lipid A export ATP-binding/permease protein MsbA; ABC transporter related	728199..729926	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555276
YP_903889.1	CDS	Rmag_0677	NC_008610.1	731475	732539	R	PFAM: glycosyl transferase, family 3; KEGG: tbd:Tbd_0270 anthranilate phosphoribosyltransferase-like protein; anthranilate phosphoribosyltransferase	complement(731475..732539)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555277
YP_903890.1	CDS	Rmag_0678	NC_008610.1	732544	732861	R	PFAM: Rieske [2Fe-2S] domain protein; KEGG: tbd:Tbd_0271 putative dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein	complement(732544..732861)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555278
YP_903891.1	CDS	Rmag_0679	NC_008610.1	732846	733454	R	PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_4077 putative lipoprotein; lytic transglycosylase, catalytic	complement(732846..733454)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555279
YP_903892.1	CDS	Rmag_0680	NC_008610.1	733451	733765	R	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein	complement(733451..733765)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555280
YP_903893.1	CDS	Rmag_0682	NC_008610.1	734378	734860	D	KEGG: tcx:Tcr_1759 thioredoxin, putative; thioredoxin, putative	734378..734860	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555281
YP_903894.1	CDS	Rmag_0683	NC_008610.1	734857	735516	D	TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: bba:Bd3500 uracil-DNA glycosylase; uracil-DNA glycosylase	734857..735516	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555282
YP_903895.1	CDS	Rmag_0684	NC_008610.1	735516	736553	D	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: tcx:Tcr_0451 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region	735516..736553	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555283
YP_903896.1	CDS	Rmag_0685	NC_008610.1	736550	738007	R	PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: mca:MCA0590 nitrate reductase; molybdopterin oxidoreductase	complement(736550..738007)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555284
YP_903897.1	CDS	Rmag_0686	NC_008610.1	738017	739717	R	PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: hch:HCH_05817 serine/threonine protein kinase; serine/threonine protein kinase	complement(738017..739717)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555285
YP_903898.1	CDS	Rmag_0687	NC_008610.1	739720	741186	R	PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_2277 conserved hypothetical nitrate transporter; major facilitator transporter	complement(739720..741186)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555286
YP_903899.1	CDS	Rmag_0688	NC_008610.1	741202	743577	R	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit; assimilatory nitrite reductase (NAD(P)H) large subunit precursor	complement(741202..743577)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555287
YP_903900.1	CDS	Rmag_0689	NC_008610.1	743944	744306	D	PFAM: molybdopterin biosynthesis MoaE; KEGG: vvu:VV13084 molybdenum cofactor biosynthesis protein E; molybdopterin synthase subunit MoaE	743944..744306	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555288
YP_903901.1	CDS	Rmag_0690	NC_008610.1	744312	744896	R	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: son:SO4722 molybdopterin-guanine dinucleotide biosynthesis protein; molybdenum cofactor guanylyltransferase	complement(744312..744896)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555289
YP_903902.1	CDS	Rmag_0691	NC_008610.1	744979	746244	D	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: tcx:Tcr_0161 molybdopterin binding domain MoeA; molybdopterin molybdochelatase	744979..746244	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555290
YP_903903.1	CDS	Rmag_0692	NC_008610.1	746270	746752	D	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: tcx:Tcr_0162 molybdenum cofactor biosynthesis protein C; GTP cyclohydrolase subunit MoaC	746270..746752	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555291
YP_903904.1	CDS	Rmag_0693	NC_008610.1	746745	747740	D	KEGG: tcx:Tcr_0158 molybdenum cofactor synthesis-like; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; GTP cyclohydrolase subunit MoaA	746745..747740	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555292
YP_903905.1	CDS	Rmag_0694	NC_008610.1	747775	748011	D	PFAM: thiamineS protein; KEGG: dar:Daro_1784 molybdopterin converting factor, subunit 1; molybdopterin synthase subunit MoaD	747775..748011	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554711
YP_903906.1	CDS	Rmag_0698	NC_008610.1	749895	750425	D	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: tcx:Tcr_1547 molybdopterin binding domain; molybdopterin adenylyltransferase	749895..750425	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554712
YP_903907.1	CDS	Rmag_0699	NC_008610.1	750733	752976	R	PFAM: von Willebrand factor, type A; KEGG: tcx:Tcr_0422 von Willebrand factor, type A; von Willebrand factor, type A	complement(750733..752976)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554713
YP_903908.1	CDS	Rmag_0700	NC_008610.1	752989	753798	R	PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; SMART: AAA ATPase; KEGG: tcx:Tcr_0423 ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain-containing protein	complement(752989..753798)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554714
YP_903909.1	CDS	Rmag_0701	NC_008610.1	753897	755279	R	catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase	complement(753897..755279)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554715
YP_903910.1	CDS	Rmag_0704	NC_008610.1	756979	758208	R	KEGG: tcx:Tcr_0590 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; glutamate N-acetyltransferase	complement(756979..758208)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554716
YP_903911.1	CDS	Rmag_0705	NC_008610.1	758286	759842	R	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO0315 iron ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component	complement(758286..759842)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554717
YP_903912.1	CDS	Rmag_0706	NC_008610.1	759992	761011	R	PFAM: extracellular solute-binding protein, family 1; KEGG: tbd:Tbd_0990 ABC transporter, iron binding protein; extracellular solute-binding protein	complement(759992..761011)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554718
YP_903913.1	CDS	Rmag_0707	NC_008610.1	761072	761728	R	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA4892 probable transport system ATP-binding protein; ABC transporter related	complement(761072..761728)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554719
YP_903914.1	CDS	Rmag_0708	NC_008610.1	761791	763488	R	PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: tcx:Tcr_1576 bilirubin oxidase; cell division protein SufI	complement(761791..763488)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554720
YP_903915.1	CDS	Rmag_0710	NC_008610.1	764431	764829	R	hypothetical protein	complement(764431..764829)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554721
YP_903916.1	CDS	Rmag_0711	NC_008610.1	765115	766482	R	PFAM: protein of unknown function DUF1111; KEGG: pae:PA4371 hypothetical protein; hypothetical protein	complement(765115..766482)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554722
YP_903917.1	CDS	Rmag_0712	NC_008610.1	766460	767767	R	KEGG: vpa:VP1920 putative iron-regulated protein A; putative iron-regulated protein A	complement(766460..767767)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554723
YP_903918.1	CDS	Rmag_0714	NC_008610.1	769769	770923	D	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein; cation diffusion facilitator family transporter	769769..770923	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554724
YP_903919.1	CDS	Rmag_0716	NC_008610.1	771437	771790	D	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tcx:Tcr_1385 thioredoxin; thioredoxin	771437..771790	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554725
YP_903920.1	CDS	Rmag_0717	NC_008610.1	771800	772120	R	TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: pha:PSHAa1332 enzyme with thioredoxin-like domain; hypothetical protein	complement(771800..772120)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554726
YP_903921.1	CDS	Rmag_0718	NC_008610.1	772126	772755	R	KEGG: tcx:Tcr_0163 hypothetical protein; hypothetical protein	complement(772126..772755)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554727
YP_903922.1	CDS	Rmag_0719	NC_008610.1	772759	773169	R	hypothetical protein	complement(772759..773169)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554728
YP_903923.1	CDS	Rmag_0721	NC_008610.1	773533	775569	R	KEGG: cbu:CBU_1914 glycyl-tRNA synthetase, beta subunit; glycine--tRNA ligase	complement(773533..775569)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554729
YP_903924.1	CDS	Rmag_0722	NC_008610.1	776085	776477	R	KEGG: noc:Noc_2908 hypothetical protein; hypothetical protein	complement(776085..776477)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554730
YP_903925.1	CDS	Rmag_0723	NC_008610.1	776477	777358	R	KEGG: tcx:Tcr_0897 TolA; hypothetical protein	complement(776477..777358)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555586
YP_903926.1	CDS	Rmag_0724	NC_008610.1	777358	777810	R	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ftl:FTL_0332 TolR protein; biopolymer transport protein ExbD/TolR	complement(777358..777810)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555587
YP_903927.1	CDS	Rmag_0725	NC_008610.1	777807	778478	R	PFAM: MotA/TolQ/ExbB proton channel; KEGG: ilo:IL1083 TonB system biopolymer transport component; MotA/TolQ/ExbB proton channel	complement(777807..778478)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555588
YP_903928.1	CDS	Rmag_0729	NC_008610.1	779785	780297	R	hypothetical protein	complement(779785..780297)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555589
YP_903929.1	CDS	hemA	NC_008610.1	780375	781625	D	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase	780375..781625	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555590
YP_903930.1	CDS	prfA	NC_008610.1	781625	782716	D	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1	781625..782716	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555591
YP_903931.1	CDS	Rmag_0732	NC_008610.1	782708	783496	R	PFAM: ABC-3 protein; KEGG: ppr:PBPRA1053 putative ABC-type Mn2+/Zn2+ transport system, permease component; ABC-3 protein	complement(782708..783496)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555592
YP_903932.1	CDS	Rmag_0733	NC_008610.1	783502	783909	R	PFAM: ferric-uptake regulator; KEGG: noc:Noc_1194 ferric-uptake regulator; ferric uptake regulator family protein	complement(783502..783909)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555593
YP_903933.1	CDS	Rmag_0734	NC_008610.1	783965	784423	D	PFAM: SmpA/OmlA domain protein; KEGG: nmu:Nmul_A0476 SmpA/OmlA; SmpA/OmlA domain-containing protein	783965..784423	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555594
YP_903934.1	CDS	Rmag_0735	NC_008610.1	784526	785473	R	PFAM: peptidase S49; KEGG: tcx:Tcr_1144 peptidase S49; peptidase S49	complement(784526..785473)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555595
YP_903935.1	CDS	Rmag_0736	NC_008610.1	785489	786085	D	TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: vfi:VF1824 heme exporter protein A; heme exporter protein CcmA	785489..786085	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555596
YP_903936.1	CDS	Rmag_0737	NC_008610.1	786082	786747	D	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: cps:CPS_1033 heme exporter protein CcmB; heme exporter protein CcmB	786082..786747	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555597
YP_903937.1	CDS	Rmag_0738	NC_008610.1	786901	788034	D	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase	786901..788034	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555598
YP_903938.1	CDS	Rmag_0739	NC_008610.1	788129	789526	D	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase	788129..789526	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555599
YP_903939.1	CDS	glyQ	NC_008610.1	789614	790537	D	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha	789614..790537	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555600
YP_903940.1	CDS	Rmag_0741	NC_008610.1	790539	791111	D	KEGG: ilo:IL0747 hypothetical protein; hypothetical protein	790539..791111	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555601
YP_903941.1	CDS	Rmag_0742	NC_008610.1	791598	792623	D	PFAM: MscS Mechanosensitive ion channel; KEGG: vfi:VFA0405 mechanosensitive ion channel; MscS mechanosensitive ion channel	791598..792623	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555602
YP_903942.1	CDS	Rmag_0743	NC_008610.1	792630	793964	D	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase	792630..793964	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555603
YP_903943.1	CDS	Rmag_0744	NC_008610.1	794032	794706	R	PFAM: electron transport protein SCO1/SenC; KEGG: rbe:RBE_0699 Sco2 protein precursor; electron transport protein SCO1/SenC	complement(794032..794706)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555604
YP_903944.1	CDS	Rmag_0745	NC_008610.1	794707	795174	R	PFAM: protein of unknown function DUF461; KEGG: dar:Daro_1578 protein of unknown function DUF461; hypothetical protein	complement(794707..795174)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555664
YP_903945.1	CDS	mnmA	NC_008610.1	796173	797264	D	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA	796173..797264	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555665
YP_903946.1	CDS	Rmag_0748	NC_008610.1	797264	797878	D	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein	797264..797878	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555666
YP_903947.1	CDS	rpsT	NC_008610.1	797922	798215	D	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20	797922..798215	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555667
YP_903948.1	CDS	Rmag_0750	NC_008610.1	798563	799963	D	KEGG: pha:PSHAa0647 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII, large subunit	798563..799963	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555668
YP_903949.1	CDS	Rmag_0751	NC_008610.1	799920	800771	D	PFAM: peptidase M23B; KEGG: psp:PSPPH_1330 peptidase, M23/M37 family; peptidase M23B	799920..800771	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555669
YP_903950.1	CDS	Rmag_0752	NC_008610.1	800762	801178	D	PFAM: RDD domain containing protein; KEGG: nmu:Nmul_A1054 RDD; RDD domain-containing protein	800762..801178	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555670
YP_903951.1	CDS	Rmag_0753	NC_008610.1	801256	801495	D	hypothetical protein	801256..801495	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555671
YP_903952.1	CDS	Rmag_0754	NC_008610.1	801513	801866	D	PFAM: Septum formation initiator; cell division protein FtsB	801513..801866	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555672
YP_903953.1	CDS	Rmag_0755	NC_008610.1	801885	802604	D	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: vvy:VV2816 4-diphosphocytidyl-2-methyl-D-erithritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	801885..802604	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555673
YP_903954.1	CDS	ispF	NC_008610.1	802601	803071	D	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	802601..803071	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555674
YP_903955.1	CDS	murC	NC_008610.1	803071	804480	D	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase	803071..804480	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555675
YP_903956.1	CDS	Rmag_0758	NC_008610.1	804513	805325	D	KEGG: mfa:Mfla_2267 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylmuramate dehydrogenase	804513..805325	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555676
YP_903957.1	CDS	ddl	NC_008610.1	805322	806203	D	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase	805322..806203	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555677
YP_903958.1	CDS	Rmag_0760	NC_008610.1	806193	806942	D	KEGG: pfo:Pfl_4670 cell division protein FtsQ; hypothetical protein	806193..806942	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555678
YP_903959.1	CDS	Rmag_0761	NC_008610.1	806948	807625	R	hypothetical protein	complement(806948..807625)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555679
YP_903960.1	CDS	Rmag_0762	NC_008610.1	807630	809204	R	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase; lytic transglycosylase, catalytic	complement(807630..809204)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555680
YP_903961.1	CDS	Rmag_0763	NC_008610.1	809180	809488	R	PFAM: BolA family protein; KEGG: pha:PSHAa2243 regulator protein; transcriptional regulator BolA	complement(809180..809488)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555681
YP_903962.1	CDS	Rmag_0764	NC_008610.1	809485	810552	R	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase, NAD binding; KEGG: tbd:Tbd_2563 NAD(P)H-flavin reductase; oxidoreductase FAD/NAD(P)-binding subunit	complement(809485..810552)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555682
YP_903963.1	CDS	Rmag_0765	NC_008610.1	810579	811496	D	KEGG: vpa:VP2818 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase	810579..811496	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555683
YP_903964.1	CDS	Rmag_0766	NC_008610.1	812554	813855	R	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_2863 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase	complement(812554..813855)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555128
YP_903965.1	CDS	Rmag_0767	NC_008610.1	813914	814573	D	PFAM: protein of unknown function UPF0005; KEGG: tbd:Tbd_0489 hypothetical protein; hypothetical protein	813914..814573	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555129
YP_903966.1	CDS	Rmag_0768	NC_008610.1	814593	815132	D	PFAM: NUDIX hydrolase; KEGG: sdn:Sden_2782 NUDIX hydrolase; NUDIX hydrolase	814593..815132	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555130
YP_903967.1	CDS	Rmag_0769	NC_008610.1	815217	816494	D	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase	815217..816494	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555131
YP_903968.1	CDS	Rmag_0770	NC_008610.1	816505	817569	D	catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase	816505..817569	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555132
YP_903969.1	CDS	Rmag_0771	NC_008610.1	817605	817829	D	KEGG: xoo:XOO4599 hypothetical protein; hypothetical protein	817605..817829	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555133
YP_903970.1	CDS	cysM	NC_008610.1	817856	818743	D	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B	817856..818743	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555134
YP_903971.1	CDS	Rmag_0773	NC_008610.1	818740	820014	D	PFAM: Cl- channel, voltage-gated family protein; KEGG: rpa:RPA3953 putative chloride channel protein; Cl- channel, voltage-gated family protein	818740..820014	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555135
YP_903972.1	CDS	Rmag_0774	NC_008610.1	820001	820423	R	PFAM: conserved hypothetical protein 701; KEGG: hch:HCH_06247 predicted membrane protein; hypothetical protein	complement(820001..820423)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555136
YP_903973.1	CDS	Rmag_0775	NC_008610.1	821283	821576	D	hypothetical protein	821283..821576	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555137
YP_903974.1	CDS	Rmag_0776	NC_008610.1	822013	822348	R	KEGG: bur:Bcep18194_C6923 hypothetical protein; hypothetical protein	complement(822013..822348)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555138
YP_903975.1	CDS	Rmag_0777	NC_008610.1	822359	823648	R	PFAM: peptidase M16 domain protein; KEGG: tcx:Tcr_1940 peptidase M16-like; peptidase M16 domain-containing protein	complement(822359..823648)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555139
YP_903976.1	CDS	Rmag_0778	NC_008610.1	823645	824970	R	PFAM: peptidase M16 domain protein; KEGG: mca:MCA0063 peptidase, M16 family; peptidase M16 domain-containing protein	complement(823645..824970)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555140
YP_903977.1	CDS	Rmag_0781	NC_008610.1	825783	826739	D	KEGG: lpp:lpp2724 signal recognition particle receptor; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY	825783..826739	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555141
YP_903978.1	CDS	Rmag_0782	NC_008610.1	827882	828088	D	hypothetical protein	827882..828088	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555142
YP_903979.1	CDS	hemC	NC_008610.1	829347	830261	R	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase	complement(829347..830261)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555143
YP_903980.1	CDS	Rmag_0784	NC_008610.1	830726	832168	D	catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase	830726..832168	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555144
YP_903981.1	CDS	Rmag_0785	NC_008610.1	832168	833130	D	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: tcx:Tcr_0192 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase	832168..833130	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555145
YP_903982.1	CDS	Rmag_0786	NC_008610.1	833902	834363	R	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: lpp:lpp2563 RNA methyltransferase TrmH family; tRNA/rRNA methyltransferase (SpoU)	complement(833902..834363)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555146
YP_903983.1	CDS	Rmag_0787	NC_008610.1	834423	837002	D	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tcx:Tcr_0414 AAA ATPase; ATPase	834423..837002	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554750
YP_903984.1	CDS	Rmag_0788	NC_008610.1	837559	838212	D	TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: tcx:Tcr_1031 electron transport complex, RnfABCDGE type, E subunit; electron transport complex, RnfABCDGE type, E subunit	837559..838212	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554751
YP_903985.1	CDS	Rmag_0790	NC_008610.1	838715	839500	D	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: tcx:Tcr_0388 modification methylase, HemK family; HemK family modification methylase	838715..839500	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554752
YP_903986.1	CDS	Rmag_0793	NC_008610.1	841083	842573	R	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pha:PSHAa1166 fumarate hydratase, class I; fumarase	complement(841083..842573)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554753
YP_903987.1	CDS	Rmag_0794	NC_008610.1	842653	843684	D	functions in MreBCD complex in some organisms; rod shape-determining protein MreB	842653..843684	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554754
YP_903988.1	CDS	Rmag_0795	NC_008610.1	843720	844514	D	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC	843720..844514	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554755
YP_903989.1	CDS	Rmag_0796	NC_008610.1	844518	844985	D	KEGG: pfo:Pfl_0840 rod shape-determining protein MreD; rod shape-determining protein MreD	844518..844985	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554756
YP_903990.1	CDS	Rmag_0797	NC_008610.1	844973	846823	D	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pae:PA4003 penicillin-binding protein 2; peptidoglycan glycosyltransferase	844973..846823	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554757
YP_903991.1	CDS	Rmag_0799	NC_008610.1	847598	849394	R	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3493 ABC transporter related; ABC transporter related	complement(847598..849394)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554758
YP_903992.1	CDS	Rmag_0800	NC_008610.1	850241	851290	D	KEGG: vpa:VP0679 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	850241..851290	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554759
YP_903993.1	CDS	Rmag_0801	NC_008610.1	851287	852480	D	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: ilo:IL0239 phosphopantothenoylcysteine synthetase/decarboxylase; phosphopantothenoylcysteine decarboxylase / phosphopantothenate-cysteine ligase	851287..852480	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554760
YP_903994.1	CDS	Rmag_0802	NC_008610.1	854216	854470	D	hypothetical protein	854216..854470	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554761
YP_903995.1	CDS	Rmag_0803	NC_008610.1	854485	857919	R	KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit	complement(854485..857919)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554762
YP_903996.1	CDS	Rmag_0804	NC_008610.1	858081	858401	R	hypothetical protein	complement(858081..858401)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554763
YP_903997.1	CDS	Rmag_0805	NC_008610.1	858411	859226	R	KEGG: tcx:Tcr_0601 sulfur oxidation protein SoxA; diheme cytochrome SoxA (sulfur oxidation)	complement(858411..859226)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554764
YP_903998.1	CDS	Rmag_0806	NC_008610.1	859254	859556	R	KEGG: bja:bll1012 sulfur oxidation protein; sulfur oxidation protein	complement(859254..859556)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554765
YP_903999.1	CDS	Rmag_0807	NC_008610.1	859589	860032	R	KEGG: tcx:Tcr_0603 sulfur oxidation protein SoxY-like; sulfur oxidation protein SoxY-like	complement(859589..860032)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554766
YP_904000.1	CDS	Rmag_0808	NC_008610.1	860043	860390	R	KEGG: tbd:Tbd_0567 sulfur oxidation protein SoxX; hypothetical protein	complement(860043..860390)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554767
YP_904001.1	CDS	Rmag_0809	NC_008610.1	860706	862160	R	KEGG: noc:Noc_2494 anthranilate synthase component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; anthranilate synthase, component I	complement(860706..862160)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554768
YP_904002.1	CDS	Rmag_0810	NC_008610.1	862265	866452	R	KEGG: lpf:lpl0363 RNA polymerase beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase, beta' subunit	complement(862265..866452)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554769
YP_904003.1	CDS	rpoB	NC_008610.1	866466	870548	R	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta	complement(866466..870548)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554731
YP_904004.1	CDS	rplL	NC_008610.1	870717	871094	R	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12	complement(870717..871094)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554732
YP_904005.1	CDS	rplJ	NC_008610.1	871125	871637	R	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10	complement(871125..871637)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554733
YP_904006.1	CDS	rplA	NC_008610.1	871827	872522	R	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1	complement(871827..872522)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554734
YP_904007.1	CDS	rplK	NC_008610.1	872527	872955	R	binds directly to 23S ribosomal RNA; 50S ribosomal protein L11	complement(872527..872955)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554735
YP_904008.1	CDS	Rmag_0816	NC_008610.1	873044	873577	R	KEGG: tcx:Tcr_0283 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription antitermination protein nusG	complement(873044..873577)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554736
YP_904009.1	CDS	Rmag_0817	NC_008610.1	873588	873959	R	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: tbd:Tbd_0392 SecE subunit of protein translocation complex; protein translocase subunit secE/sec61 gamma	complement(873588..873959)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554737
YP_904010.1	CDS	Rmag_0818	NC_008610.1	874128	875318	R	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu	complement(874128..875318)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554738
YP_904011.1	CDS	Rmag_0819	NC_008610.1	875718	876938	R	PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: hch:HCH_05974 malic enzyme; malate dehydrogenase	complement(875718..876938)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554739
YP_904012.1	CDS	Rmag_0821	NC_008610.1	879395	882208	R	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase	complement(879395..882208)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554740
YP_904013.1	CDS	Rmag_0822	NC_008610.1	882317	882655	R	PFAM: histidine triad (HIT) protein; KEGG: csa:Csal_0911 histidine triad (HIT) protein; histidine triad (HIT) protein	complement(882317..882655)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554741
YP_904014.1	CDS	Rmag_0824	NC_008610.1	883302	884432	R	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase	complement(883302..884432)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554742
YP_904015.1	CDS	Rmag_0825	NC_008610.1	884970	885551	D	PFAM: nitroreductase; KEGG: reu:Reut_A1045 nitroreductase; hypothetical protein	884970..885551	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554743
YP_904016.1	CDS	Rmag_0826	NC_008610.1	885977	886687	R	PFAM: beta-lactamase domain protein; KEGG: dre:405865 zgc:85680; beta-lactamase domain-containing protein	complement(885977..886687)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554744
YP_904017.1	CDS	Rmag_0828	NC_008610.1	887536	888279	R	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase	complement(887536..888279)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554745
YP_904018.1	CDS	Rmag_0829	NC_008610.1	888615	888953	D	hypothetical protein	888615..888953	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554746
YP_904019.1	CDS	Rmag_0831	NC_008610.1	891032	891865	R	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase	complement(891032..891865)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554747
YP_904020.1	CDS	trpC	NC_008610.1	891934	892731	D	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase	891934..892731	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554748
YP_904021.1	CDS	Rmag_0833	NC_008610.1	892728	893138	D	PFAM: OsmC family protein; KEGG: mfa:Mfla_0380 OsmC-like protein; OsmC family protein	892728..893138	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554749
YP_904022.1	CDS	thiG	NC_008610.1	893783	894565	D	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase	893783..894565	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554672
YP_904023.1	CDS	Rmag_0835	NC_008610.1	894898	896037	D	PFAM: aminotransferase, class I and II; KEGG: pfl:PFL_5692 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase	894898..896037	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554673
YP_904024.1	CDS	Rmag_0836	NC_008610.1	896024	896761	D	PFAM: alpha/beta hydrolase fold; KEGG: sdn:Sden_3530 BioH protein; alpha/beta hydrolase fold	896024..896761	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554674
YP_904025.1	CDS	Rmag_0837	NC_008610.1	896776	897267	D	KEGG: tcx:Tcr_1819 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit	896776..897267	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554675
YP_904026.1	CDS	Rmag_0838	NC_008610.1	897264	898355	D	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit	897264..898355	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554676
YP_904027.1	CDS	Rmag_0839	NC_008610.1	898359	898733	R	PFAM: glutaredoxin; KEGG: pha:PSHAa0634 glutaredoxin; glutaredoxin	complement(898359..898733)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554677
YP_904028.1	CDS	Rmag_0840	NC_008610.1	898730	899563	R	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase	complement(898730..899563)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554678
YP_904029.1	CDS	Rmag_0841	NC_008610.1	899567	900301	R	KEGG: hdu:HD0334 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase	complement(899567..900301)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554679
YP_904030.1	CDS	Rmag_0842	NC_008610.1	900301	900480	R	PFAM: protein of unknown function DUF343; KEGG: tfu:Tfu_2509 hypothetical protein; hypothetical protein	complement(900301..900480)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554680
YP_904031.1	CDS	lpxK	NC_008610.1	900477	901424	R	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase	complement(900477..901424)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554681
YP_904032.1	CDS	Rmag_0844	NC_008610.1	901900	903135	D	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: mfa:Mfla_2095 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein	901900..903135	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554682
YP_904033.1	CDS	Rmag_0845	NC_008610.1	903128	903808	D	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: neu:NE1056 lipoprotein releasing system ATP-binding ABC transporter; ABC transporter related	903128..903808	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554683
YP_904034.1	CDS	Rmag_0846	NC_008610.1	905442	905801	R	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase	complement(905442..905801)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554684
YP_904035.1	CDS	Rmag_0847	NC_008610.1	905811	906941	R	KEGG: cps:CPS_1050 oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase, beta subunit	complement(905811..906941)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554685
YP_904036.1	CDS	Rmag_0848	NC_008610.1	906957	908786	R	catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase	complement(906957..908786)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554686
YP_904037.1	CDS	Rmag_0849	NC_008610.1	908779	909033	R	TIGRFAM: sodium pump decarboxylases, gamma subunit; PFAM: sodium pump decarboxylase, gamma subunit; sodium pump decarboxylases, gamma subunit	complement(908779..909033)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554687
YP_904038.1	CDS	infA	NC_008610.1	909149	909367	R	stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1	complement(909149..909367)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554688
YP_904039.1	CDS	Rmag_0851	NC_008610.1	909537	910358	D	KEGG: reu:Reut_A0215 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase	909537..910358	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554689
YP_904040.1	CDS	Rmag_0852	NC_008610.1	910727	911170	R	hypothetical protein	complement(910727..911170)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554690
YP_904041.1	CDS	Rmag_0853	NC_008610.1	911209	911955	R	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mca:MCA3061 uroporphyrinogen-III synthase/uroporphyrin-III C-methyltransferase; uroporphyrinogen III synthase HEM4	complement(911209..911955)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554691
YP_904042.1	CDS	Rmag_0854	NC_008610.1	911959	912552	R	hypothetical protein	complement(911959..912552)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555011
YP_904043.1	CDS	Rmag_0855	NC_008610.1	912612	913565	D	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: tcx:Tcr_0977 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter	912612..913565	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555012
YP_904044.1	CDS	Rmag_0856	NC_008610.1	913550	914020	D	PFAM: protein of unknown function UPF0079; KEGG: msu:MS1514 predicted ATPase or kinase; hypothetical protein	913550..914020	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555013
YP_904045.1	CDS	Rmag_0858	NC_008610.1	915036	916736	R	TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: HesB/YadR/YfhF-family protein; Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tbd:Tbd_2473 cobyrinic acid a,c-diamide synthase CbiA; hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase	complement(915036..916736)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555014
YP_904046.1	CDS	Rmag_0859	NC_008610.1	916759	917961	R	PFAM: Polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit; polysulphide reductase, NrfD	complement(916759..917961)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555015
YP_904047.1	CDS	Rmag_0860	NC_008610.1	917987	918718	R	TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_2475 iron-sulfur cluster protein; twin-arginine translocation pathway signal	complement(917987..918718)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555016
YP_904048.1	CDS	Rmag_0861	NC_008610.1	918715	919098	R	KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit; hypothetical protein	complement(918715..919098)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555017
YP_904049.1	CDS	Rmag_0862	NC_008610.1	919128	921092	R	unknown function; putative glutamate synthase (NADPH) small subunit	complement(919128..921092)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555018
YP_904050.1	CDS	Rmag_0863	NC_008610.1	921159	922715	R	PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit, putative; hypothetical protein	complement(921159..922715)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555019
YP_904051.1	CDS	Rmag_0864	NC_008610.1	922717	923490	R	PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein; nitrate reductase, gamma subunit	complement(922717..923490)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555020
YP_904052.1	CDS	Rmag_0865	NC_008610.1	923564	923887	R	PFAM: DsrC family protein; KEGG: mag:amb3372 dissimilatory sulfite reductase; DsrC family protein	complement(923564..923887)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555021
YP_904053.1	CDS	Rmag_0866	NC_008610.1	923914	924210	R	PFAM: DsrH family protein; KEGG: tbd:Tbd_2481 DsrH protein; DsrH family protein	complement(923914..924210)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555022
YP_904054.1	CDS	Rmag_0867	NC_008610.1	924223	924621	R	PFAM: DsrE family protein; KEGG: mag:amb3370 uncharacterized protein involved in the oxidation of intracellular sulfur; DsrE family protein	complement(924223..924621)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555023
YP_904055.1	CDS	Rmag_0868	NC_008610.1	924623	925024	R	PFAM: DsrE family protein; KEGG: mag:amb3369 intracellular sulfur oxidation protein DsrE; DsrE family protein	complement(924623..925024)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555024
YP_904056.1	CDS	Rmag_0869	NC_008610.1	925037	926110	R	KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type beta subunit	complement(925037..926110)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555025
YP_904057.1	CDS	Rmag_0870	NC_008610.1	926183	927484	R	KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit	complement(926183..927484)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555026
YP_904058.1	CDS	Rmag_0871	NC_008610.1	927703	929136	R	TIGRFAM: glutamate synthases, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rba:RB5653 NADH-glutamate synthase small chain; glutamate synthase (NADH) small subunit	complement(927703..929136)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555027
YP_904059.1	CDS	rplS	NC_008610.1	929302	929655	D	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19	929302..929655	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555028
YP_904060.1	CDS	greA	NC_008610.1	931477	931953	R	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA	complement(931477..931953)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555029
YP_904061.1	CDS	Rmag_0875	NC_008610.1	931953	935162	R	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; carbamoyl-phosphate synthase large subunit	complement(931953..935162)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555030
YP_904062.1	CDS	Rmag_0876	NC_008610.1	935184	935870	R	PFAM: VacJ family lipoprotein; KEGG: noc:Noc_2787 VacJ-like lipoprotein; VacJ family lipoprotein	complement(935184..935870)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555031
YP_904063.1	CDS	Rmag_0877	NC_008610.1	935867	936988	R	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: vfi:VF0472 carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase small subunit	complement(935867..936988)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555032
YP_904064.1	CDS	Rmag_0878	NC_008610.1	937107	937376	D	KEGG: tcx:Tcr_0383 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein	937107..937376	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555033
YP_904065.1	CDS	Rmag_0879	NC_008610.1	937373	937573	D	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: csa:Csal_3147 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS	937373..937573	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555034
YP_904066.1	CDS	Rmag_0880	NC_008610.1	937616	938698	R	KEGG: noc:Noc_2654 hypothetical protein; hypothetical protein	complement(937616..938698)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555035
YP_904067.1	CDS	Rmag_0881	NC_008610.1	939512	939802	D	KEGG: vpa:VP1626 sulfite reductase, gamma subunit-related protein; sulfite reductase, gamma subunit-related protein	939512..939802	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555036
YP_904068.1	CDS	alaS	NC_008610.1	939811	942408	R	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase	complement(939811..942408)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555037
YP_904069.1	CDS	Rmag_0883	NC_008610.1	943128	944975	D	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: tcx:Tcr_1692 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glutamine--fructose-6-phosphate transaminase	943128..944975	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555038
YP_904070.1	CDS	Rmag_0884	NC_008610.1	944985	946220	D	catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate isomerase	944985..946220	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555039
YP_904071.1	CDS	Rmag_0885	NC_008610.1	946217	947047	D	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: tdn:Tmden_1473 UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase	946217..947047	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555040
YP_904072.1	CDS	Rmag_0886	NC_008610.1	947071	948969	R	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cps:CPS_0594 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD	complement(947071..948969)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555041
YP_904073.1	CDS	Rmag_0887	NC_008610.1	948984	949544	R	PFAM: sugar transferase; KEGG: dar:Daro_1277 sugar transferase; sugar transferase	complement(948984..949544)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555042
YP_904074.1	CDS	Rmag_0889	NC_008610.1	950432	951175	R	PFAM: glycosyl transferase, family 2; KEGG: hpy:HP0102 hypothetical protein; glycosyl transferase family protein	complement(950432..951175)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555043
YP_904075.1	CDS	Rmag_0890	NC_008610.1	951172	952320	R	PFAM: glycosyl transferase, group 1; KEGG: dge:Dgeo_2669 glycosyl transferase, group 1; glycosyl transferase, group 1	complement(951172..952320)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555044
YP_904076.1	CDS	Rmag_0891	NC_008610.1	953316	954080	R	PFAM: glycosyl transferase, family 2; KEGG: hpy:HP0102 hypothetical protein; glycosyl transferase family protein	complement(953316..954080)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555045
YP_904077.1	CDS	Rmag_0892	NC_008610.1	954598	955236	R	KEGG: cpe:CPE0622 hypothetical protein; hypothetical protein	complement(954598..955236)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555046
YP_904078.1	CDS	Rmag_0893	NC_008610.1	955226	955681	R	TIGRFAM: cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: msu:MS0658 cytidylyltransferase; glycerol-3-phosphate cytidylyltransferase	complement(955226..955681)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555047
YP_904079.1	CDS	Rmag_0894	NC_008610.1	955686	956630	R	KEGG: ava:Ava_1042 methyltransferase FkbM; methyltransferase FkbM	complement(955686..956630)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555048
YP_904080.1	CDS	Rmag_0895	NC_008610.1	956721	957371	R	hypothetical protein	complement(956721..957371)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555049
YP_904081.1	CDS	Rmag_0896	NC_008610.1	957611	958744	R	KEGG: pub:SAR11_0530 cyclopropane-fatty-acyl-phospholipid synthase (CMAS family); hypothetical protein	complement(957611..958744)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555089
YP_904082.1	CDS	Rmag_0897	NC_008610.1	958744	960315	R	KEGG: pmi:PMT9312_1328 hypothetical protein; hypothetical protein	complement(958744..960315)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555090
YP_904083.1	CDS	Rmag_0898	NC_008610.1	960317	960664	R	KEGG: mth:MTH1523 glucose-1-phosphate adenylyltransferase related protein; glucose-1-phosphate adenylyltransferase related protein	complement(960317..960664)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555091
YP_904084.1	CDS	Rmag_0899	NC_008610.1	960675	961820	R	KEGG: lmf:LMOf2365_0663 hypothetical protein; hypothetical protein	complement(960675..961820)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555092
YP_904085.1	CDS	Rmag_0900	NC_008610.1	961847	962338	R	KEGG: aae:aq_2171 putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; putative 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	complement(961847..962338)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555093
YP_904086.1	CDS	Rmag_0901	NC_008610.1	962328	963656	R	PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_0665 probable polysaccharide biosynthesis protein; polysaccharide biosynthesis protein	complement(962328..963656)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555094
YP_904087.1	CDS	Rmag_0902	NC_008610.1	963646	964602	R	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dps:DP0023 probable GDP-L-fucose synthetase; NAD-dependent epimerase/dehydratase	complement(963646..964602)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555095
YP_904088.1	CDS	Rmag_0903	NC_008610.1	964613	965704	R	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: tbd:Tbd_1776 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase	complement(964613..965704)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555096
YP_904089.1	CDS	Rmag_0904	NC_008610.1	965758	967176	R	KEGG: csa:Csal_1692 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase (GDP)	complement(965758..967176)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555097
YP_904090.1	CDS	Rmag_0905	NC_008610.1	967571	968275	D	KEGG: par:Psyc_1205 hypothetical protein; hypothetical protein	967571..968275	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555098
YP_904091.1	CDS	Rmag_0907	NC_008610.1	969710	970498	D	PFAM: glycosyl transferase, family 25; KEGG: ppr:PBPRA0217 putative Lex2B protein (lipooligosaccharide 5G8 epitope biosynthesis-associated protein); glycosyl transferase family protein	969710..970498	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555099
YP_904092.1	CDS	Rmag_0908	NC_008610.1	970509	971744	R	PFAM: O-antigen polymerase; KEGG: hin:HI0874 hypothetical protein; O-antigen polymerase	complement(970509..971744)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555100
YP_904093.1	CDS	Rmag_0909	NC_008610.1	971787	973436	D	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase	971787..973436	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555101
YP_904094.1	CDS	surE	NC_008610.1	974772	975515	R	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE	complement(974772..975515)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555102
YP_904095.1	CDS	Rmag_0911	NC_008610.1	975539	977761	R	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: mca:MCA1789 ATP-dependent Clp protease, ATP-binding subunit ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA	complement(975539..977761)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555103
YP_904096.1	CDS	Rmag_0912	NC_008610.1	977769	978068	R	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: nha:Nham_2417 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS	complement(977769..978068)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555104
YP_904097.1	CDS	Rmag_0913	NC_008610.1	978071	979153	R	PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ; permease YjgP/YjgQ family protein	complement(978071..979153)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555105
YP_904098.1	CDS	guaA	NC_008610.1	979196	980761	D	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase	979196..980761	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555106
YP_904099.1	CDS	Rmag_0915	NC_008610.1	980752	981222	D	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pha:PSHAa2333 tRNA-specific adenosine deaminase; CMP/dCMP deaminase, zinc-binding	980752..981222	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555107
YP_904100.1	CDS	Rmag_0916	NC_008610.1	981816	982562	R	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tcx:Tcr_0712 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-[acyl-carrier-protein] reductase	complement(981816..982562)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555177
YP_904101.1	CDS	Rmag_0917	NC_008610.1	982559	983491	R	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; KEGG: tcx:Tcr_0711 malonyl CoA-acyl carrier protein transacylase; [Acyl-carrier-protein] S-malonyltransferase	complement(982559..983491)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555178
YP_904102.1	CDS	rpmA	NC_008610.1	983580	983837	R	involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27	complement(983580..983837)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555179
YP_904103.1	CDS	rplU	NC_008610.1	983849	984160	R	PFAM: ribosomal protein L21; KEGG: pfo:Pfl_4860 ribosomal protein L21; 50S ribosomal protein L21	complement(983849..984160)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555180
YP_904104.1	CDS	Rmag_0920	NC_008610.1	984288	984776	D	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ppu:PP2903 peptidyl-prolyl cis-trans isomerase B; peptidyl-prolyl cis-trans isomerase, cyclophilin type	984288..984776	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555181
YP_904105.1	CDS	Rmag_0921	NC_008610.1	984776	985495	D	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: hdu:HD1938 UDP-2,3 diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase	984776..985495	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555182
YP_904106.1	CDS	Rmag_0922	NC_008610.1	985460	987265	R	PFAM: ribonuclease II; KEGG: ftu:FTT0257 ribonuclease II family protein; ribonuclease II	complement(985460..987265)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555183
YP_904107.1	CDS	Rmag_0923	NC_008610.1	987273	987647	R	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H	complement(987273..987647)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555184
YP_904108.1	CDS	gcvT	NC_008610.1	987691	988767	R	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T	complement(987691..988767)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555185
YP_904109.1	CDS	Rmag_0925	NC_008610.1	988767	989417	R	PFAM: Intracellular septation protein A; KEGG: mca:MCA1646 intracellular septation protein A; intracellular septation protein A	complement(988767..989417)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555186
YP_904110.1	CDS	Rmag_0926	NC_008610.1	989421	989666	R	hypothetical protein	complement(989421..989666)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555187
YP_904111.1	CDS	Rmag_0927	NC_008610.1	990023	990430	D	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sde:Sde_3698 peptidase S1C, Do; putative endoribonuclease L-PSP	990023..990430	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555188
YP_904112.1	CDS	Rmag_0928	NC_008610.1	990509	992569	D	PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; KEGG: csa:Csal_3245 ATP-dependent DNA helicase RecG; DEAD/DEAH box helicase domain-containing protein	990509..992569	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555189
YP_904113.1	CDS	Rmag_0929	NC_008610.1	992601	993074	D	PFAM: Chorismate lyase; KEGG: pha:PSHAa2311 chorismate pyruvate lyase UbiC; chorismate lyase	992601..993074	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555190
YP_904114.1	CDS	Rmag_0930	NC_008610.1	993111	993824	D	TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbo:SBO_1132 hypothetical protein; putative methyltransferase	993111..993824	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555191
YP_904115.1	CDS	Rmag_0931	NC_008610.1	993833	994420	D	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: hch:HCH_06126 anthranilate/para-aminobenzoate synthases component II; anthranilate synthase, component II	993833..994420	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555192
YP_904116.1	CDS	Rmag_0932	NC_008610.1	994424	994843	D	PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_2399 rhodanese-like protein; rhodanese domain-containing protein	994424..994843	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555193
YP_904117.1	CDS	Rmag_0933	NC_008610.1	994850	995098	D	PFAM: glutaredoxin; KEGG: wol:WD0758 glutaredoxin family protein; glutaredoxin	994850..995098	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555194
YP_904118.1	CDS	gpsA	NC_008610.1	995101	996069	D	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	995101..996069	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555195
YP_904119.1	CDS	Rmag_0935	NC_008610.1	997190	997585	R	PFAM: ribosomal protein S9; KEGG: cps:CPS_4442 ribosomal protein S9; 30S ribosomal protein S9	complement(997190..997585)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555196
YP_904120.1	CDS	rplM	NC_008610.1	997600	998028	R	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13	complement(997600..998028)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554770
YP_904121.1	CDS	Rmag_0937	NC_008610.1	998144	999739	R	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pfo:Pfl_3156 hypothetical protein; phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase	complement(998144..999739)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554771
YP_904122.1	CDS	Rmag_0939	NC_008610.1	1000436	1000999	D	PFAM: Redoxin domain protein; KEGG: tcx:Tcr_0234 hypothetical protein; redoxin domain-containing protein	1000436..1000999	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554772
YP_904123.1	CDS	Rmag_0942	NC_008610.1	1002704	1004524	D	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; KEGG: sde:Sde_3034 ATP-dependent RNA helicase DeaD; DEAD/DEAH box helicase domain-containing protein	1002704..1004524	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554773
YP_904124.1	CDS	Rmag_0944	NC_008610.1	1006158	1006361	D	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: bca:BCE5298 cold shock protein CspC; cold-shock DNA-binding protein family protein	1006158..1006361	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554774
YP_904125.1	CDS	Rmag_0945	NC_008610.1	1006765	1007016	R	hypothetical protein	complement(1006765..1007016)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554775
YP_904126.1	CDS	Rmag_0946	NC_008610.1	1008296	1009711	D	KEGG: ppr:PBPRA1693 putative exonuclease I; PFAM: Exonuclease, RNase T and DNA polymerase III; Exonuclease C-terminal domain protein; SMART: Exonuclease; exodeoxyribonuclease I subunit C	1008296..1009711	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554776
YP_904127.1	CDS	Rmag_0947	NC_008610.1	1009779	1010411	D	KEGG: tcx:Tcr_1030 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III	1009779..1010411	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554777
YP_904128.1	CDS	Rmag_0948	NC_008610.1	1010778	1011632	D	PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: ath:At3g61080 fructosamine kinase family protein; fructosamine kinase	1010778..1011632	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554778
YP_904129.1	CDS	hisH	NC_008610.1	1011849	1012469	R	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH	complement(1011849..1012469)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554779
YP_904130.1	CDS	hisB	NC_008610.1	1012476	1013054	R	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase	complement(1012476..1013054)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554780
YP_904131.1	CDS	Rmag_0951	NC_008610.1	1013293	1014318	R	KEGG: tcx:Tcr_0800 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate semialdehyde dehydrogenase	complement(1013293..1014318)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554781
YP_904132.1	CDS	Rmag_0952	NC_008610.1	1014735	1015475	R	PFAM: protein of unknown function DUF34; KEGG: nmu:Nmul_A0806 protein of unknown function DUF34; hypothetical protein	complement(1014735..1015475)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554782
YP_904133.1	CDS	Rmag_0953	NC_008610.1	1015462	1016523	R	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase	complement(1015462..1016523)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554783
YP_904134.1	CDS	Rmag_0954	NC_008610.1	1016520	1017272	R	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ppu:PP4782 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase type-1	complement(1016520..1017272)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554784
YP_904135.1	CDS	Rmag_0955	NC_008610.1	1017265	1017882	R	PFAM: DSBA oxidoreductase; KEGG: mca:MCA2602 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase	complement(1017265..1017882)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554785
YP_904136.1	CDS	Rmag_0956	NC_008610.1	1017885	1018367	R	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	complement(1017885..1018367)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554786
YP_904137.1	CDS	Rmag_0957	NC_008610.1	1018360	1018719	R	TIGRFAM: dihydroneopterin aldolase; KEGG: mca:MCA2988 dihydroneopterin aldolase; dihydroneopterin aldolase	complement(1018360..1018719)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554787
YP_904138.1	CDS	Rmag_0958	NC_008610.1	1018774	1019367	D	PFAM: protein of unknown function DUF205; KEGG: tcx:Tcr_1811 protein of unknown function DUF205; acyl-phosphate glycerol-3-phosphate acyltransferase	1018774..1019367	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554788
YP_904139.1	CDS	Rmag_0960	NC_008610.1	1020244	1021002	R	PFAM: ABC-2 type transporter; KEGG: ppr:PBPRA3177 putative permease; ABC-2 type transporter	complement(1020244..1021002)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555050
YP_904140.1	CDS	Rmag_0961	NC_008610.1	1021002	1021919	R	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL2259 ABC-type multidrug transport system, ATPase component; ABC transporter related	complement(1021002..1021919)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555051
YP_904141.1	CDS	Rmag_0962	NC_008610.1	1022029	1023537	D	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ftl:FTL_0310 pyruvate dehydrogenase, E2 component; dehydrogenase catalytic domain-containing protein	1022029..1023537	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555052
YP_904142.1	CDS	Rmag_0963	NC_008610.1	1023534	1024949	D	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: tcx:Tcr_1003 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase	1023534..1024949	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555053
YP_904143.1	CDS	Rmag_0964	NC_008610.1	1024946	1025599	D	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; KEGG: dar:Daro_3924 protein-L-isoaspartate(D-aspartate) O-methyltransferase:O-methyltransferase, family 3; protein-L-isoaspartate(D-aspartate) O-methyltransferase	1024946..1025599	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555054
YP_904144.1	CDS	Rmag_0965	NC_008610.1	1025603	1027984	D	KEGG: sde:Sde_3357 putative integral membrane protein; putative integral membrane protein	1025603..1027984	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555055
YP_904145.1	CDS	Rmag_0966	NC_008610.1	1028040	1029623	D	KEGG: noc:Noc_2467 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase	1028040..1029623	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555056
YP_904146.1	CDS	Rmag_0967	NC_008610.1	1029595	1030152	D	KEGG: nma:NMA0164 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase	1029595..1030152	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555057
YP_904147.1	CDS	Rmag_0968	NC_008610.1	1030617	1030847	D	PFAM: helix-turn-helix, Fis-type; KEGG: mfa:Mfla_0350 helix-turn-helix, fis-type; helix-turn-helix, Fis-type	1030617..1030847	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555058
YP_904148.1	CDS	purH	NC_008610.1	1030888	1032429	D	involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	1030888..1032429	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555059
YP_904149.1	CDS	Rmag_0971	NC_008610.1	1033738	1034295	D	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: csa:Csal_0021 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase	1033738..1034295	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555060
YP_904150.1	CDS	Rmag_0972	NC_008610.1	1034705	1035886	R	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: tcx:Tcr_1557 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase	complement(1034705..1035886)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555061
YP_904151.1	CDS	Rmag_0973	NC_008610.1	1035886	1037205	R	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0383 PmbA protein; peptidase U62, modulator of DNA gyrase	complement(1035886..1037205)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555062
YP_904152.1	CDS	Rmag_0974	NC_008610.1	1037213	1037974	R	KEGG: tcx:Tcr_0203 hypothetical protein; hypothetical protein	complement(1037213..1037974)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555063
YP_904153.1	CDS	Rmag_0975	NC_008610.1	1037974	1038822	R	PFAM: CBS domain containing protein; transporter-associated region; KEGG: hch:HCH_05351 putative Mg2+ and Co2+ transporter CorC; CBS domain-containing protein	complement(1037974..1038822)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555064
YP_904154.1	CDS	Rmag_0976	NC_008610.1	1038861	1039157	R	PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein; hypothetical protein	complement(1038861..1039157)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555065
YP_904155.1	CDS	Rmag_0977	NC_008610.1	1039147	1039878	R	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	complement(1039147..1039878)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555066
YP_904156.1	CDS	Rmag_0978	NC_008610.1	1040476	1040907	R	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ilo:IL1434 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase	complement(1040476..1040907)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555067
YP_904157.1	CDS	Rmag_0980	NC_008610.1	1042886	1043956	R	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease	complement(1042886..1043956)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555068
YP_904158.1	CDS	Rmag_0981	NC_008610.1	1043949	1044674	R	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA4461 probable ATP-binding component of ABC transporter; ABC transporter related	complement(1043949..1044674)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555069
YP_904159.1	CDS	Rmag_0982	NC_008610.1	1044987	1045739	R	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: cbu:CBU_1002 birA bifunctional protein; biotin--acetyl-CoA-carboxylase ligase	complement(1044987..1045739)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554933
YP_904160.1	CDS	Rmag_0983	NC_008610.1	1045718	1046074	R	PFAM: diacylglycerol kinase; KEGG: hdu:HD1253 diacylglycerol kinase; diacylglycerol kinase	complement(1045718..1046074)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554934
YP_904161.1	CDS	Rmag_0984	NC_008610.1	1046122	1046865	D	KEGG: pfo:Pfl_1896 pseudouridylate synthase; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A	1046122..1046865	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554935
YP_904162.1	CDS	Rmag_0985	NC_008610.1	1046867	1049143	R	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	complement(1046867..1049143)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554936
YP_904163.1	CDS	Rmag_0986	NC_008610.1	1049242	1050135	D	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_B0361 transcriptional regulator, LysR family; LysR family transcriptional regulator	1049242..1050135	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554937
YP_904164.1	CDS	Rmag_0987	NC_008610.1	1050238	1052181	D	PFAM: Citrate transporter; TrkA-C domain protein; KEGG: sru:SRU_1767 putative sodium-dependent transporter; citrate transporter	1050238..1052181	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554938
YP_904165.1	CDS	Rmag_0988	NC_008610.1	1052209	1052814	D	PFAM: carbonic anhydrase; KEGG: aci:ACIAD1056 putative carbonic anhydrase; carbonic anhydrase	1052209..1052814	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554939
YP_904166.1	CDS	Rmag_0989	NC_008610.1	1052847	1053416	R	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM; 16S rRNA processing protein RimM	complement(1052847..1053416)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554940
YP_904167.1	CDS	rpsP	NC_008610.1	1053394	1053669	R	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16	complement(1053394..1053669)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554941
YP_904168.1	CDS	Rmag_0991	NC_008610.1	1053729	1055105	R	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase	complement(1053729..1055105)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554942
YP_904169.1	CDS	Rmag_0992	NC_008610.1	1055216	1057774	D	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	1055216..1057774	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554943
YP_904170.1	CDS	rpmG	NC_008610.1	1057827	1057982	R	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33	complement(1057827..1057982)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554944
YP_904171.1	CDS	rpmB	NC_008610.1	1057992	1058228	R	required for 70S ribosome assembly; 50S ribosomal protein L28	complement(1057992..1058228)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554945
YP_904172.1	CDS	pyrE	NC_008610.1	1058957	1059595	R	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase	complement(1058957..1059595)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554946
YP_904173.1	CDS	Rmag_0996	NC_008610.1	1059620	1060390	D	KEGG: mca:MCA0321 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III	1059620..1060390	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554947
YP_904174.1	CDS	Rmag_0997	NC_008610.1	1061233	1061790	D	PFAM: putative methyltransferase; KEGG: lpf:lpl0521 S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase	1061233..1061790	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554948
YP_904175.1	CDS	Rmag_0998	NC_008610.1	1061792	1062244	D	PFAM: FxsA cytoplasmic membrane protein; KEGG: pha:PSHAa0261 F exclusion suppressor; FxsA cytoplasmic membrane protein	1061792..1062244	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554949
YP_904176.1	CDS	Rmag_0999	NC_008610.1	1062232	1063446	D	KEGG: mca:MCA2492 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase, middle domain protein; FolC bifunctional protein	1062232..1063446	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554950
YP_904177.1	CDS	Rmag_1000	NC_008610.1	1063494	1064342	D	KEGG: hch:HCH_02441 uncharacterized membrane protein, required for colicin V production; hypothetical protein	1063494..1064342	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554951
YP_904178.1	CDS	Rmag_1001	NC_008610.1	1064353	1065870	D	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase	1064353..1065870	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554991
YP_904179.1	CDS	Rmag_1002	NC_008610.1	1068429	1069592	D	KEGG: noc:Noc_1151 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-succinylhomoserine sulfhydrylase	1068429..1069592	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554992
YP_904180.1	CDS	Rmag_1003	NC_008610.1	1069621	1070130	D	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase	1069621..1070130	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554993
YP_904181.1	CDS	Rmag_1004	NC_008610.1	1070130	1071347	D	PFAM: beta-ketoacyl synthase; KEGG: tcx:Tcr_1945 beta-ketoacyl synthase; 3-oxoacyl-[acyl-carrier-protein] synthase I	1070130..1071347	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554994
YP_904182.1	CDS	Rmag_1005	NC_008610.1	1071387	1072313	R	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: noc:Noc_2349 SecF protein; protein translocase subunit secF	complement(1071387..1072313)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554995
YP_904183.1	CDS	Rmag_1006	NC_008610.1	1072310	1074157	R	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tcx:Tcr_1331 protein-export membrane protein SecD; protein-export membrane protein SecD	complement(1072310..1074157)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554996
YP_904184.1	CDS	Rmag_1007	NC_008610.1	1074174	1074515	R	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ftl:FTL_0847 preprotein translocase family protein; protein translocase subunit yajC	complement(1074174..1074515)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554997
YP_904185.1	CDS	Rmag_1008	NC_008610.1	1074537	1075826	R	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase	complement(1074537..1075826)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554998
YP_904186.1	CDS	Rmag_1009	NC_008610.1	1075911	1076198	D	PFAM: Rhodanese domain protein; KEGG: vch:VCA0100 phage shock protein E; rhodanese domain-containing protein	1075911..1076198	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554999
YP_904187.1	CDS	Rmag_1010	NC_008610.1	1076228	1076860	D	KEGG: tbd:Tbd_2490 hypothetical protein; hypothetical protein	1076228..1076860	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555000
YP_904188.1	CDS	Rmag_1011	NC_008610.1	1083153	1083638	R	PFAM: Rhodanese domain protein; KEGG: plt:Plut_0032 rhodanese-like; rhodanese domain-containing protein	complement(1083153..1083638)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555001
YP_904189.1	CDS	Rmag_1012	NC_008610.1	1083644	1084273	R	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: hch:HCH_04021 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; two component LuxR family transcriptional regulator	complement(1083644..1084273)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555002
YP_904190.1	CDS	Rmag_1013	NC_008610.1	1084270	1085754	R	PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: dar:Daro_0833 GAF:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase, dimerization and phosphoacceptor region; signal transduction histidine kinase, nitrate/nitrite-specific, NarQ	complement(1084270..1085754)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555003
YP_904191.1	CDS	trmE	NC_008610.1	1085788	1087131	R	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE	complement(1085788..1087131)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555004
YP_904192.1	CDS	Rmag_1015	NC_008610.1	1087139	1088629	R	TIGRFAM: glutamate--cysteine ligase; KEGG: hch:HCH_06422 glutamate--cysteine ligase; glutamate-cysteine ligase	complement(1087139..1088629)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555005
YP_904193.1	CDS	Rmag_1016	NC_008610.1	1088741	1089664	D	TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: noc:Noc_0306 mutator MutT; hypothetical protein	1088741..1089664	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555006
YP_904194.1	CDS	Rmag_1018	NC_008610.1	1092217	1096716	D	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rba:RB5654 glutamate synthase [NADPH] large chain; glutamate synthase (ferredoxin)	1092217..1096716	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555007
YP_904195.1	CDS	Rmag_1019	NC_008610.1	1097134	1097625	R	PFAM: dihydrofolate reductase region; KEGG: noc:Noc_0235 dihydrofolate reductase; dihydrofolate reductase	complement(1097134..1097625)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555008
YP_904196.1	CDS	Rmag_1020	NC_008610.1	1097679	1098284	D	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pha:PSHAa1813 Maf/Ham1 domain; maf protein	1097679..1098284	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555009
YP_904197.1	CDS	Rmag_1021	NC_008610.1	1098290	1101718	D	TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_1642 transcription-repair coupling factor; transcription-repair coupling factor	1098290..1101718	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555010
YP_904198.1	CDS	Rmag_1022	NC_008610.1	1101751	1102692	R	PFAM: PfkB domain protein; KEGG: noc:Noc_2548 carbohydrate kinase, PfkB; ribokinase-like domain-containing protein	complement(1101751..1102692)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555538
YP_904199.1	CDS	ispH	NC_008610.1	1102755	1103675	R	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase	complement(1102755..1103675)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555539
YP_904200.1	CDS	Rmag_1024	NC_008610.1	1104035	1104883	R	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: csa:Csal_1263 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha	complement(1104035..1104883)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555540
YP_904201.1	CDS	trpA	NC_008610.1	1104903	1105700	R	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha	complement(1104903..1105700)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555541
YP_904202.1	CDS	hemE	NC_008610.1	1105707	1106750	R	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase	complement(1105707..1106750)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555542
YP_904203.1	CDS	rpmE	NC_008610.1	1106860	1107135	R	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31	complement(1106860..1107135)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555543
YP_904204.1	CDS	Rmag_1028	NC_008610.1	1107145	1109547	R	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tcx:Tcr_1960 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase	complement(1107145..1109547)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555544
YP_904205.1	CDS	Rmag_1029	NC_008610.1	1109652	1110413	D	hypothetical protein	1109652..1110413	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555545
YP_904206.1	CDS	Rmag_1030	NC_008610.1	1110422	1111780	D	KEGG: sde:Sde_3959 UDP-N-acetylglucosamine diphosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase	1110422..1111780	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555546
YP_904207.1	CDS	Rmag_1031	NC_008610.1	1112002	1113207	R	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta	complement(1112002..1113207)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555547
YP_904208.1	CDS	Rmag_1032	NC_008610.1	1113204	1113812	R	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase	complement(1113204..1113812)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555548
YP_904209.1	CDS	Rmag_1033	NC_008610.1	1113812	1114519	R	hypothetical protein	complement(1113812..1114519)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555549
YP_904210.1	CDS	Rmag_1034	NC_008610.1	1115413	1117746	R	KEGG: tcx:Tcr_0196 DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase I	complement(1115413..1117746)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555550
YP_904211.1	CDS	Rmag_1035	NC_008610.1	1117746	1118237	R	PFAM: protein of unknown function DUF494; KEGG: noc:Noc_3011 protein of unknown function DUF494; hypothetical protein	complement(1117746..1118237)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555551
YP_904212.1	CDS	Rmag_1037	NC_008610.1	1119415	1119555	D	PFAM: ribosomal protein L34; KEGG: vvy:VV0005 ribosomal protein L34; 50S ribosomal protein L34P	1119415..1119555	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555552
YP_904213.1	CDS	Rmag_1038	NC_008610.1	1119565	1119885	D	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: pha:PSHAa3025 ribonuclease P protein component (RNaseP protein) (RNase P protein) (protein C5); ribonuclease P protein component	1119565..1119885	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555553
YP_904214.1	CDS	Rmag_1039	NC_008610.1	1119886	1120101	D	PFAM: protein of unknown function DUF37; KEGG: tcx:Tcr_1890 protein of unknown function DUF37; hypothetical protein	1119886..1120101	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555554
YP_904215.1	CDS	Rmag_1040	NC_008610.1	1120130	1121755	D	PFAM: 60 kDa inner membrane insertion protein; KEGG: tcx:Tcr_2197 60 kDa inner membrane insertion protein; protein translocase subunit yidC	1120130..1121755	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555555
YP_904216.1	CDS	Rmag_1041	NC_008610.1	1121764	1122624	D	KEGG: tbd:Tbd_2491 hypothetical protein; hypothetical protein	1121764..1122624	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555556
YP_904217.1	CDS	Rmag_1042	NC_008610.1	1122640	1123164	D	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: aci:ACIAD0063 N-acetyl-anhydromuramyl-L-alanine amidase (regulates ampC); N-acetyl-anhydromuranmyl-L-alanine amidase	1122640..1123164	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555254
YP_904218.1	CDS	Rmag_1043	NC_008610.1	1123151	1123684	D	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: noc:Noc_2789 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	1123151..1123684	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555255
YP_904219.1	CDS	atpC	NC_008610.1	1123948	1124364	R	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon	complement(1123948..1124364)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555256
YP_904220.1	CDS	Rmag_1045	NC_008610.1	1124365	1125744	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta	complement(1124365..1125744)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555257
YP_904221.1	CDS	Rmag_1046	NC_008610.1	1125766	1126629	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma	complement(1125766..1126629)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555258
YP_904222.1	CDS	Rmag_1047	NC_008610.1	1126643	1128184	R	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha	complement(1126643..1128184)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555259
YP_904223.1	CDS	Rmag_1048	NC_008610.1	1128212	1128763	R	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: noc:Noc_3077 H+-transporting two-sector ATPase, delta (OSCP) subunit; ATP synthase F1, delta subunit	complement(1128212..1128763)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555260
YP_904224.1	CDS	Rmag_1049	NC_008610.1	1128770	1129243	R	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: ngo:NGO2146 F-type H+-transporting ATPase b chain; ATP synthase F0, B subunit	complement(1128770..1129243)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555261
YP_904225.1	CDS	Rmag_1050	NC_008610.1	1129277	1129510	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C	complement(1129277..1129510)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555262
YP_904226.1	CDS	Rmag_1051	NC_008610.1	1129535	1130389	R	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A	complement(1129535..1130389)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555263
YP_904227.1	CDS	Rmag_1052	NC_008610.1	1130389	1130736	R	KEGG: tcx:Tcr_2172 ATP synthase protein I; hypothetical protein	complement(1130389..1130736)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555264
YP_904228.1	CDS	Rmag_1053	NC_008610.1	1130921	1132216	D	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1170 sulfide-quinone reductase; sulfide-quinone reductase	1130921..1132216	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555265
YP_904229.1	CDS	Rmag_1054	NC_008610.1	1133403	1134221	R	PFAM: ATP-NAD/AcoX kinase; KEGG: tcx:Tcr_0867 NAD(+) kinase; NAD(+) kinase	complement(1133403..1134221)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555266
YP_904230.1	CDS	Rmag_1055	NC_008610.1	1134345	1134887	D	PFAM: GrpE protein; KEGG: tcx:Tcr_0869 GrpE protein; GrpE protein	1134345..1134887	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555267
YP_904231.1	CDS	Rmag_1056	NC_008610.1	1137794	1138033	D	hypothetical protein	1137794..1138033	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555268
YP_904232.1	CDS	Rmag_1057	NC_008610.1	1138229	1140454	D	PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: tcx:Tcr_0446 protein-disulfide reductase; protein-disulfide reductase	1138229..1140454	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555269
YP_904233.1	CDS	Rmag_1058	NC_008610.1	1140544	1140993	D	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase	1140544..1140993	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555270
YP_904234.1	CDS	Rmag_1059	NC_008610.1	1140994	1141401	D	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vpa:VP2880 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein	1140994..1141401	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555271
YP_904235.1	CDS	Rmag_1060	NC_008610.1	1141398	1142762	D	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: hin:HI0972 biotin carboxylase; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha / biotin carboxylase	1141398..1142762	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555272
YP_904236.1	CDS	argC	NC_008610.1	1142755	1143777	D	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase	1142755..1143777	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555273
YP_904237.1	CDS	Rmag_1062	NC_008610.1	1143787	1144140	D	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA	1143787..1144140	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555502
YP_904238.1	CDS	Rmag_1063	NC_008610.1	1144144	1145280	D	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase	1144144..1145280	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555503
YP_904239.1	CDS	Rmag_1064	NC_008610.1	1145283	1146023	D	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pha:PSHAa2926 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine; ubiquinone/menaquinone biosynthesis methyltransferases	1145283..1146023	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555504
YP_904240.1	CDS	Rmag_1065	NC_008610.1	1146150	1146470	D	hypothetical protein	1146150..1146470	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555505
YP_904241.1	CDS	Rmag_1066	NC_008610.1	1146473	1148077	D	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: tcx:Tcr_0400 2-polyprenylphenol 6-hydroxylase; 2-polyprenylphenol 6-hydroxylase	1146473..1148077	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555506
YP_904242.1	CDS	Rmag_1067	NC_008610.1	1148231	1148899	D	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc	1148231..1148899	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555507
YP_904243.1	CDS	Rmag_1068	NC_008610.1	1148916	1149491	D	Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase	1148916..1149491	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555508
YP_904244.1	CDS	Rmag_1069	NC_008610.1	1149515	1150606	D	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: vvy:VV0924 predicted GTPase; GTP-binding protein YchF	1149515..1150606	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555509
YP_904245.1	CDS	Rmag_1070	NC_008610.1	1150638	1152176	D	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase	1150638..1152176	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555510
YP_904246.1	CDS	Rmag_1071	NC_008610.1	1152203	1152874	D	PFAM: ribulose-phosphate 3-epimerase; KEGG: son:SO0292 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase	1152203..1152874	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555511
YP_904247.1	CDS	rpsB	NC_008610.1	1153103	1154041	D	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2	1153103..1154041	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555512
YP_904248.1	CDS	tsf	NC_008610.1	1154120	1155010	D	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts	1154120..1155010	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555513
YP_904249.1	CDS	Rmag_1074	NC_008610.1	1157100	1157624	R	KEGG: bba:Bd2932 hypothetical protein; hypothetical protein	complement(1157100..1157624)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555514
YP_904250.1	CDS	Rmag_1075	NC_008610.1	1159152	1159517	R	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: lpp:lpp2837 protein-export membrane protein SecG (preprotein translocase subunit); protein translocase subunit secG	complement(1159152..1159517)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555515
YP_904251.1	CDS	tpiA	NC_008610.1	1159520	1160266	R	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase	complement(1159520..1160266)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555516
Rmag_R0001	tRNA	Rmag_R0001	NC_008610.1	47921	47996	D	tRNA-Thr	47921..47996	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555517
Rmag_R0002	tRNA	Rmag_R0002	NC_008610.1	53269	53344	D	tRNA-Phe	53269..53344	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555518
Rmag_R0003	tRNA	Rmag_R0003	NC_008610.1	60338	60414	D	tRNA-Met	60338..60414	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555576
Rmag_R0004	tRNA	Rmag_R0004	NC_008610.1	71406	71482	D	tRNA-Met	71406..71482	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555577
Rmag_R0005	tRNA	Rmag_R0005	NC_008610.1	127740	127816	R	tRNA-Met	complement(127740..127816)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555578
Rmag_R0006	tRNA	Rmag_R0006	NC_008610.1	130754	130828	R	tRNA-Gln	complement(130754..130828)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555579
Rmag_R0007	tRNA	Rmag_R0007	NC_008610.1	177719	177792	R	tRNA-Cys	complement(177719..177792)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555580
Rmag_R0008	tRNA	Rmag_R0008	NC_008610.1	177865	177940	R	tRNA-Gly	complement(177865..177940)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555581
Rmag_R0009	tRNA	Rmag_R0009	NC_008610.1	178612	178688	R	tRNA-Arg	complement(178612..178688)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555582
Rmag_R0010	tRNA	Rmag_R0010	NC_008610.1	295585	295671	D	tRNA-Leu	295585..295671	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555583
Rmag_R0011	tRNA	Rmag_R0011	NC_008610.1	355140	355215	D	tRNA-Ala	355140..355215	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555584
Rmag_R0012	tRNA	Rmag_R0012	NC_008610.1	355237	355311	D	tRNA-Glu	355237..355311	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555585
Rmag_R0013	tRNA	Rmag_R0013	NC_008610.1	355375	355449	D	tRNA-Glu	355375..355449	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554606
Rmag_R0014	tRNA	Rmag_R0014	NC_008610.1	440344	440419	R	tRNA-His	complement(440344..440419)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554607
Rmag_R0015	tRNA	Rmag_R0015	NC_008610.1	442219	442295	R	tRNA-Arg	complement(442219..442295)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554608
Rmag_R0016	tRNA	Rmag_R0016	NC_008610.1	442344	442420	R	tRNA-Pro	complement(442344..442420)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554609
Rmag_R0017	tRNA	Rmag_R0017	NC_008610.1	463030	463105	D	tRNA-Asn	463030..463105	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554610
Rmag_R0018	tRNA	Rmag_R0018	NC_008610.1	470448	470524	R	tRNA-Arg	complement(470448..470524)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554611
Rmag_R0019	tRNA	Rmag_R0019	NC_008610.1	471419	471495	D	tRNA-Val	471419..471495	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554612
Rmag_R0021	tRNA	Rmag_R0021	NC_008610.1	621148	621235	R	tRNA-Ser	complement(621148..621235)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4554614
Rmag_R0022	tRNA	Rmag_R0022	NC_008610.1	645473	645548	R	tRNA-Lys	complement(645473..645548)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555372
Rmag_R0023	tRNA	Rmag_R0023	NC_008610.1	672337	672413	R	tRNA-Arg	complement(672337..672413)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555373
Rmag_R0024	tRNA	Rmag_R0024	NC_008610.1	688967	689043	R	tRNA-Pro	complement(688967..689043)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555374
Rmag_R0025	tRNA	Rmag_R0025	NC_008610.1	708434	708510	R	tRNA-Asp	complement(708434..708510)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555375
Rmag_R0026	tRNA	Rmag_R0026	NC_008610.1	708521	708596	R	tRNA-Val	complement(708521..708596)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555376
Rmag_R0028	tRNA	Rmag_R0028	NC_008610.1	873976	874051	R	tRNA-Trp	complement(873976..874051)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555378
Rmag_R0029	tRNA	Rmag_R0029	NC_008610.1	875358	875433	R	tRNA-Thr	complement(875358..875433)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555379
Rmag_R0030	tRNA	Rmag_R0030	NC_008610.1	875449	875522	R	tRNA-Gly	complement(875449..875522)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555380
Rmag_R0031	tRNA	Rmag_R0031	NC_008610.1	875540	875624	R	tRNA-Tyr	complement(875540..875624)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555147
Rmag_R0032	tRNA	Rmag_R0032	NC_008610.1	893674	893765	D	tRNA-Ser	893674..893765	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555148
Rmag_R0033	tRNA	Rmag_R0033	NC_008610.1	909057	909141	R	tRNA-Leu	complement(909057..909141)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555149
Rmag_R0034	tRNA	Rmag_R0034	NC_008610.1	989716	989802	D	tRNA-Leu	989716..989802	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555150
Rmag_R0035	tRNA	Rmag_R0035	NC_008610.1	1058349	1058438	D	tRNA-Ser	1058349..1058438	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555151
Rmag_R0038	tRNA	Rmag_R0038	NC_008610.1	1080775	1080850	R	tRNA-Ala	complement(1080775..1080850)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555154
Rmag_R0039	tRNA	Rmag_R0039	NC_008610.1	1080975	1081051	R	tRNA-Ile	complement(1080975..1081051)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555155
Rmag_R0041	tRNA	Rmag_R0041	NC_008610.1	1159047	1159132	R	tRNA-Leu	complement(1159047..1159132)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555460
Rmag_R0036	rRNA	Rmag_R0036	NC_008610.1	1077264	1077379	R	5S ribosomal RNA	complement(1077264..1077379)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555152
Rmag_R0037	rRNA	Rmag_R0037	NC_008610.1	1077544	1080173	R	23S ribosomal RNA	complement(1077544..1080173)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555153
Rmag_R0040	rRNA	Rmag_R0040	NC_008610.1	1081270	1082807	R	16S ribosomal RNA	complement(1081270..1082807)	Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)	4555156