-- dump date 20140619_024836 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 264201000001 SEQ_END SEQ_END NC_005861.1 2414465 2414465 DR NC_005861.1; contig end 2414465..2414465 Candidatus Protochlamydia amoebophila UWE25 YP_007000.1 CDS pc0001 NC_005861.1 123 338 R hypothetical protein complement(123..338) Candidatus Protochlamydia amoebophila UWE25 2780984 YP_007001.1 CDS pc0002 NC_005861.1 462 746 D hypothetical protein 462..746 Candidatus Protochlamydia amoebophila UWE25 2780985 YP_007002.1 CDS pc0003 NC_005861.1 1055 4024 D hypothetical protein 1055..4024 Candidatus Protochlamydia amoebophila UWE25 2780986 YP_007003.1 CDS pc0004 NC_005861.1 4428 5840 D hypothetical protein 4428..5840 Candidatus Protochlamydia amoebophila UWE25 2779763 YP_007004.1 CDS pc0005 NC_005861.1 5907 8303 R phosphoketolase complement(5907..8303) Candidatus Protochlamydia amoebophila UWE25 2779841 YP_007005.1 CDS pc0006 NC_005861.1 9037 9249 R hypothetical protein complement(9037..9249) Candidatus Protochlamydia amoebophila UWE25 2779842 YP_007006.1 CDS pc0007 NC_005861.1 9395 11098 R hypothetical protein complement(9395..11098) Candidatus Protochlamydia amoebophila UWE25 2779488 YP_007007.1 CDS recC NC_005861.1 11759 15346 D similar to exodeoxyribonuclease V gamma chain; exodeoxyribonuclease V gamma chain 11759..15346 Candidatus Protochlamydia amoebophila UWE25 2779803 YP_007008.1 CDS recB NC_005861.1 15358 18858 D similar to exodeoxyribonuclease V beta chain; exodeoxyribonuclease V beta chain 15358..18858 Candidatus Protochlamydia amoebophila UWE25 2779802 YP_007009.1 CDS recD NC_005861.1 18855 20723 D similar to exodeoxyribonuclease V alpha chain recD; exodeoxyribonuclease V alpha chain recD 18855..20723 Candidatus Protochlamydia amoebophila UWE25 2781074 YP_007010.1 CDS pc0011 NC_005861.1 21414 21608 D hypothetical protein 21414..21608 Candidatus Protochlamydia amoebophila UWE25 2779489 YP_007011.1 CDS pc0012 NC_005861.1 21646 23628 R hypothetical protein complement(21646..23628) Candidatus Protochlamydia amoebophila UWE25 2780919 YP_007012.1 CDS ssuA NC_005861.1 23912 25006 D similar to substrate-binding protein of aliphatic sulfonate ABC transporter; substrate-binding protein of aliphatic sulfonate ABC transporter 23912..25006 Candidatus Protochlamydia amoebophila UWE25 2780365 YP_007013.1 CDS ssuB NC_005861.1 24993 25784 D strongly similar to ATP-binding component of ABC transporters; ABC transporter ATP-binding protein 24993..25784 Candidatus Protochlamydia amoebophila UWE25 2780366 YP_007014.1 CDS ssuC NC_005861.1 25781 26557 D similar to integral membrane components of the ABC transporters; integral membrane components of the ABC transporters 25781..26557 Candidatus Protochlamydia amoebophila UWE25 2780367 YP_007015.1 CDS glmU NC_005861.1 26732 28063 R similar to bifunctional protein UDP-N-acetylglucosamine pyrophosphorylases, Glucosamine-1-phosphate N-acetyltransferase; bifunctional protein UDP-N-acetylglucosamine pyrophosphorylase, glucosamine-1-phosphate N-acetyltransferase complement(26732..28063) Candidatus Protochlamydia amoebophila UWE25 2780378 YP_007016.1 CDS rfaF NC_005861.1 28522 29571 R similar to ADP-heptose--lipopolysaccharide heptosyltransferase II; ADP-heptose--lipopolysaccharide heptosyltransferase II complement(28522..29571) Candidatus Protochlamydia amoebophila UWE25 2780529 YP_007017.1 CDS pc0018 NC_005861.1 29961 31583 D hypothetical protein 29961..31583 Candidatus Protochlamydia amoebophila UWE25 2780920 YP_007018.1 CDS ruvC NC_005861.1 31580 32086 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 31580..32086 Candidatus Protochlamydia amoebophila UWE25 2779417 YP_007019.1 CDS ruvA NC_005861.1 32105 32710 D strongly similar to Holliday junction DNA helicase; Holliday junction DNA helicase 32105..32710 Candidatus Protochlamydia amoebophila UWE25 2779576 YP_007020.1 CDS nth NC_005861.1 32733 33374 R strongly similar to endonuclease III (UV endonuclease); endonuclease III (UV endonuclease) complement(32733..33374) Candidatus Protochlamydia amoebophila UWE25 2780893 YP_007021.1 CDS trmE NC_005861.1 33359 34735 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(33359..34735) Candidatus Protochlamydia amoebophila UWE25 2779712 YP_007022.1 CDS psdD NC_005861.1 34867 35784 D similar to phosphatidylserine decarboxylase proenzyme; phosphatidylserine decarboxylase proenzyme 34867..35784 Candidatus Protochlamydia amoebophila UWE25 2779791 YP_007023.1 CDS ahpC NC_005861.1 35903 36460 R strongly similar to proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA); proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA) complement(35903..36460) Candidatus Protochlamydia amoebophila UWE25 2781141 YP_007024.1 CDS pc0025 NC_005861.1 36689 37321 R hypothetical protein complement(36689..37321) Candidatus Protochlamydia amoebophila UWE25 2779986 YP_007025.1 CDS pc0026 NC_005861.1 37531 42066 R hypothetical protein complement(37531..42066) Candidatus Protochlamydia amoebophila UWE25 2781317 YP_007026.1 CDS prmA NC_005861.1 42300 43094 D similar to ribosomal protein L11 methyltransferase; ribosomal protein L11 methyltransferase 42300..43094 Candidatus Protochlamydia amoebophila UWE25 2779498 YP_007027.1 CDS pc0028 NC_005861.1 43555 43917 D hypothetical protein 43555..43917 Candidatus Protochlamydia amoebophila UWE25 2781318 YP_007028.1 CDS pc0029 NC_005861.1 44228 44479 R hypothetical protein complement(44228..44479) Candidatus Protochlamydia amoebophila UWE25 2781319 YP_007029.1 CDS groEl NC_005861.1 44688 46361 R strongly similar to 60 kDa chaperonin (GroEL); molecular chaperone GroEL complement(44688..46361) Candidatus Protochlamydia amoebophila UWE25 2780418 YP_007030.1 CDS groEs NC_005861.1 46386 46733 R strongly similar to chaperonin groES; molecular chaperone GroES complement(46386..46733) Candidatus Protochlamydia amoebophila UWE25 2780419 YP_007031.1 CDS pc0032 NC_005861.1 46824 48059 R hypothetical protein complement(46824..48059) Candidatus Protochlamydia amoebophila UWE25 2779767 YP_007032.1 CDS putA NC_005861.1 48362 52009 D similar to bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase); bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase) 48362..52009 Candidatus Protochlamydia amoebophila UWE25 2780235 YP_007033.1 CDS mutD NC_005861.1 51894 54179 D strongly similar to ATP-dependent DNA helicase; ATP-dependent DNA helicase 51894..54179 Candidatus Protochlamydia amoebophila UWE25 2779597 YP_007034.1 CDS pc0035 NC_005861.1 54446 54745 D hypothetical protein 54446..54745 Candidatus Protochlamydia amoebophila UWE25 2780678 YP_007035.1 CDS pc0036 NC_005861.1 54770 55351 R hypothetical protein complement(54770..55351) Candidatus Protochlamydia amoebophila UWE25 2780679 YP_007036.1 CDS pc0037 NC_005861.1 56119 57060 D similar to metalloprotease; metalloprotease 56119..57060 Candidatus Protochlamydia amoebophila UWE25 2780757 YP_007037.1 CDS pc0038 NC_005861.1 57233 60094 R hypothetical protein complement(57233..60094) Candidatus Protochlamydia amoebophila UWE25 2780758 YP_007038.1 CDS pc0039 NC_005861.1 60861 61208 D hypothetical protein 60861..61208 Candidatus Protochlamydia amoebophila UWE25 2780759 YP_007039.1 CDS pc0040 NC_005861.1 61805 65227 R hypothetical protein complement(61805..65227) Candidatus Protochlamydia amoebophila UWE25 2781346 YP_007040.1 CDS pc0041 NC_005861.1 65317 68748 R hypothetical protein complement(65317..68748) Candidatus Protochlamydia amoebophila UWE25 2780754 YP_007041.1 CDS pc0042 NC_005861.1 68835 72272 R hypothetical protein complement(68835..72272) Candidatus Protochlamydia amoebophila UWE25 2780755 YP_007042.1 CDS pc0043 NC_005861.1 72654 73982 R hypothetical protein complement(72654..73982) Candidatus Protochlamydia amoebophila UWE25 2780756 YP_007043.1 CDS pc0044 NC_005861.1 74061 77489 R hypothetical protein complement(74061..77489) Candidatus Protochlamydia amoebophila UWE25 2781112 YP_007044.1 CDS pc0045 NC_005861.1 77584 81045 R hypothetical protein complement(77584..81045) Candidatus Protochlamydia amoebophila UWE25 2780441 YP_007045.1 CDS pc0046 NC_005861.1 81362 84643 R hypothetical protein complement(81362..84643) Candidatus Protochlamydia amoebophila UWE25 2780442 YP_007046.1 CDS pc0047 NC_005861.1 85064 85369 D hypothetical protein 85064..85369 Candidatus Protochlamydia amoebophila UWE25 2780298 YP_007047.1 CDS pc0048 NC_005861.1 85501 87096 R hypothetical protein complement(85501..87096) Candidatus Protochlamydia amoebophila UWE25 2780299 YP_007048.1 CDS pc0049 NC_005861.1 88089 88946 R hypothetical protein complement(88089..88946) Candidatus Protochlamydia amoebophila UWE25 2781458 YP_007049.1 CDS pc0050 NC_005861.1 89737 90789 R hypothetical protein complement(89737..90789) Candidatus Protochlamydia amoebophila UWE25 2781459 YP_007050.1 CDS pc0051 NC_005861.1 91605 95060 R hypothetical protein complement(91605..95060) Candidatus Protochlamydia amoebophila UWE25 2781435 YP_007051.1 CDS pc0052 NC_005861.1 95214 96353 R hypothetical protein complement(95214..96353) Candidatus Protochlamydia amoebophila UWE25 2779430 YP_007052.1 CDS pc0053 NC_005861.1 96456 98582 R hypothetical protein complement(96456..98582) Candidatus Protochlamydia amoebophila UWE25 2779431 YP_007053.1 CDS pc0054 NC_005861.1 98629 101544 R hypothetical protein complement(98629..101544) Candidatus Protochlamydia amoebophila UWE25 2779432 YP_007054.1 CDS pc0055 NC_005861.1 101504 102013 R hypothetical protein complement(101504..102013) Candidatus Protochlamydia amoebophila UWE25 2779915 YP_007055.1 CDS pc0056 NC_005861.1 102365 103714 R hypothetical protein complement(102365..103714) Candidatus Protochlamydia amoebophila UWE25 2781186 YP_007056.1 CDS pc0057 NC_005861.1 103747 107181 R hypothetical protein complement(103747..107181) Candidatus Protochlamydia amoebophila UWE25 2781187 YP_007057.1 CDS pc0058 NC_005861.1 107456 110497 R hypothetical protein complement(107456..110497) Candidatus Protochlamydia amoebophila UWE25 2780090 YP_007058.1 CDS pc0059 NC_005861.1 110545 113988 R hypothetical protein complement(110545..113988) Candidatus Protochlamydia amoebophila UWE25 2780091 YP_007059.1 CDS pc0060 NC_005861.1 114884 115738 R similar to extracellular metalloproteinase; extracellular metalloproteinase complement(114884..115738) Candidatus Protochlamydia amoebophila UWE25 2780092 YP_007060.1 CDS pc0061 NC_005861.1 116938 117600 R hypothetical protein complement(116938..117600) Candidatus Protochlamydia amoebophila UWE25 2780396 YP_007061.1 CDS pc0062 NC_005861.1 117922 118632 R hypothetical protein complement(117922..118632) Candidatus Protochlamydia amoebophila UWE25 2779625 YP_007062.1 CDS pc0063 NC_005861.1 119309 120196 R hypothetical protein complement(119309..120196) Candidatus Protochlamydia amoebophila UWE25 2779626 YP_007063.1 CDS pc0064 NC_005861.1 121198 122781 R hypothetical protein complement(121198..122781) Candidatus Protochlamydia amoebophila UWE25 2781030 YP_007064.1 CDS pc0065 NC_005861.1 123045 123593 R hypothetical protein complement(123045..123593) Candidatus Protochlamydia amoebophila UWE25 2781031 YP_007065.1 CDS pc0066 NC_005861.1 123545 124453 R hypothetical protein complement(123545..124453) Candidatus Protochlamydia amoebophila UWE25 2781176 YP_007066.1 CDS pc0067 NC_005861.1 124467 125639 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(124467..125639) Candidatus Protochlamydia amoebophila UWE25 2781177 YP_007067.1 CDS pc0068 NC_005861.1 125921 126103 R hypothetical protein complement(125921..126103) Candidatus Protochlamydia amoebophila UWE25 2781050 YP_007068.2 CDS aspC NC_005861.1 126400 127596 R catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase complement(126400..127596) Candidatus Protochlamydia amoebophila UWE25 2779794 YP_007069.1 CDS pc0070 NC_005861.1 127768 128007 R hypothetical protein complement(127768..128007) Candidatus Protochlamydia amoebophila UWE25 2779760 YP_007070.1 CDS topA NC_005861.1 128482 131085 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein complement(128482..131085) Candidatus Protochlamydia amoebophila UWE25 2780467 YP_007071.1 CDS dprA NC_005861.1 131167 132258 R similar to protein required for chromosomal DNA transformation; protein required for chromosomal DNA transformation complement(131167..132258) Candidatus Protochlamydia amoebophila UWE25 2780695 YP_007072.1 CDS aroB NC_005861.1 132397 133455 R similar to 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(132397..133455) Candidatus Protochlamydia amoebophila UWE25 2779772 YP_007073.1 CDS pc0074 NC_005861.1 133606 133851 R hypothetical protein complement(133606..133851) Candidatus Protochlamydia amoebophila UWE25 2779761 YP_007074.1 CDS pc0075 NC_005861.1 133845 134090 D hypothetical protein 133845..134090 Candidatus Protochlamydia amoebophila UWE25 2779762 YP_007075.1 CDS pc0076 NC_005861.1 134284 135036 R hypothetical protein complement(134284..135036) Candidatus Protochlamydia amoebophila UWE25 2781457 YP_007076.1 CDS parB NC_005861.1 135333 136115 D similar to chromosome partitioning protein; chromosome partitioning protein 135333..136115 Candidatus Protochlamydia amoebophila UWE25 2780863 YP_007077.1 CDS copA NC_005861.1 136133 138322 D similar to copper-transporting ATPase; copper-transporting ATPase 136133..138322 Candidatus Protochlamydia amoebophila UWE25 2779825 YP_007078.1 CDS pc0079 NC_005861.1 138297 139280 D strongly similar to UDP-glucuronat epimerase; UDP-glucuronat epimerase 138297..139280 Candidatus Protochlamydia amoebophila UWE25 2779554 YP_007079.1 CDS pc0080 NC_005861.1 139323 139547 D hypothetical protein 139323..139547 Candidatus Protochlamydia amoebophila UWE25 2779555 YP_007080.1 CDS pc0081 NC_005861.1 139592 140242 D hypothetical protein 139592..140242 Candidatus Protochlamydia amoebophila UWE25 2780760 YP_007081.1 CDS pc0082 NC_005861.1 140790 142289 R hypothetical protein complement(140790..142289) Candidatus Protochlamydia amoebophila UWE25 2780761 YP_007082.1 CDS gpsA NC_005861.1 142294 143295 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(142294..143295) Candidatus Protochlamydia amoebophila UWE25 2780166 YP_007083.1 CDS pc0084 NC_005861.1 143526 144194 R hypothetical protein complement(143526..144194) Candidatus Protochlamydia amoebophila UWE25 2780762 YP_007084.1 CDS pc0085 NC_005861.1 144259 144858 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(144259..144858) Candidatus Protochlamydia amoebophila UWE25 2780888 YP_007085.1 CDS pc0086 NC_005861.1 145079 147250 R contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein complement(145079..147250) Candidatus Protochlamydia amoebophila UWE25 2780253 YP_007086.1 CDS pc0087 NC_005861.1 147770 148210 D hypothetical protein 147770..148210 Candidatus Protochlamydia amoebophila UWE25 2780254 YP_007087.1 CDS pc0088 NC_005861.1 148548 149741 D hypothetical protein 148548..149741 Candidatus Protochlamydia amoebophila UWE25 2779653 YP_007088.1 CDS mutY NC_005861.1 149879 150937 D similar to A/G-specific adenine glycosylase, mutY; A/G-specific adenine glycosylase 149879..150937 Candidatus Protochlamydia amoebophila UWE25 2779540 YP_007089.1 CDS pc0090 NC_005861.1 151176 151373 D hypothetical protein 151176..151373 Candidatus Protochlamydia amoebophila UWE25 2779654 YP_007090.1 CDS bcp NC_005861.1 151673 152161 R similar to bacterioferritin comigratory protein (BCP); bacterioferritin comigratory protein (BCP) complement(151673..152161) Candidatus Protochlamydia amoebophila UWE25 2780734 YP_007091.1 CDS hemB NC_005861.1 152383 153417 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 152383..153417 Candidatus Protochlamydia amoebophila UWE25 2779719 YP_007092.1 CDS pc0093 NC_005861.1 153464 155626 R hypothetical protein complement(153464..155626) Candidatus Protochlamydia amoebophila UWE25 2781380 YP_007093.1 CDS napA NC_005861.1 155866 157098 D similar to Na(+)/H(+) antiporter; Na(+)/H(+) antiporter 155866..157098 Candidatus Protochlamydia amoebophila UWE25 2779542 YP_007094.1 CDS nqrA NC_005861.1 157177 158577 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 157177..158577 Candidatus Protochlamydia amoebophila UWE25 2780503 YP_007095.1 CDS oppF NC_005861.1 158570 159394 R strongly similar to ATP binding protein, component of oligopeptide permease, oppF; ATP binding protein, component of oligopeptide permease, oppF complement(158570..159394) Candidatus Protochlamydia amoebophila UWE25 2779618 YP_007096.1 CDS oppD NC_005861.1 159391 160416 R strongly similar to ATP binding protein, component of oligopeptide permease, oppD; ATP binding protein, component of oligopeptide permease, oppD complement(159391..160416) Candidatus Protochlamydia amoebophila UWE25 2779748 YP_007097.1 CDS pc0098 NC_005861.1 160575 161306 D hypothetical protein 160575..161306 Candidatus Protochlamydia amoebophila UWE25 2781381 YP_007098.1 CDS pc0099 NC_005861.1 161360 162775 D hypothetical protein 161360..162775 Candidatus Protochlamydia amoebophila UWE25 2780421 YP_007099.1 CDS pc0100 NC_005861.1 162813 163391 D hypothetical protein 162813..163391 Candidatus Protochlamydia amoebophila UWE25 2781109 YP_007100.1 CDS oppC NC_005861.1 163541 165304 R similar to oligopeptide transport system permease, oppC; oligopeptide transport system permease, oppC complement(163541..165304) Candidatus Protochlamydia amoebophila UWE25 2779959 YP_007101.1 CDS dppB NC_005861.1 165274 166770 R similar to dipeptide transport system permease, dppB; dipeptide transport system permease, dppB complement(165274..166770) Candidatus Protochlamydia amoebophila UWE25 2780922 YP_007102.1 CDS oppA NC_005861.1 166774 168921 R similar to substrate binding proteins, component of oligopeptide permease, oppA; substrate binding proteins, component of oligopeptide permease, oppA complement(166774..168921) Candidatus Protochlamydia amoebophila UWE25 2779867 YP_007103.1 CDS pc0104 NC_005861.1 168921 169613 R hypothetical protein complement(168921..169613) Candidatus Protochlamydia amoebophila UWE25 2781110 YP_007104.1 CDS pc0105 NC_005861.1 169613 169822 R hypothetical protein complement(169613..169822) Candidatus Protochlamydia amoebophila UWE25 2781111 YP_007105.1 CDS glgP NC_005861.1 169878 172481 D strongly similar to glycogen phosphorylase; glycogen phosphorylase 169878..172481 Candidatus Protochlamydia amoebophila UWE25 2781228 YP_007106.1 CDS pc0107 NC_005861.1 172510 174561 R hypothetical protein complement(172510..174561) Candidatus Protochlamydia amoebophila UWE25 2781434 YP_007107.1 CDS fliY NC_005861.1 174928 175764 R similar to amino acid ABC transporter, periplasmic amino acid-binding protein; amino acid ABC transporter substrate-binding protein complement(174928..175764) Candidatus Protochlamydia amoebophila UWE25 2780497 YP_007108.1 CDS glgC NC_005861.1 175951 177369 D strongly similar to glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 175951..177369 Candidatus Protochlamydia amoebophila UWE25 2781227 YP_007109.1 CDS pc0110 NC_005861.1 177439 178206 D hypothetical protein 177439..178206 Candidatus Protochlamydia amoebophila UWE25 2780656 YP_007110.1 CDS nrdD NC_005861.1 178729 180741 R similar to ribonucleoside triphosphate reductase; ribonucleoside triphosphate reductase complement(178729..180741) Candidatus Protochlamydia amoebophila UWE25 2779703 YP_007111.1 CDS pc0112 NC_005861.1 180908 181120 R hypothetical protein complement(180908..181120) Candidatus Protochlamydia amoebophila UWE25 2780657 YP_007112.1 CDS pc0113 NC_005861.1 181113 182096 R hypothetical protein complement(181113..182096) Candidatus Protochlamydia amoebophila UWE25 2779693 YP_007113.1 CDS batE NC_005861.1 182335 183090 R similar to batE protein; batE protein complement(182335..183090) Candidatus Protochlamydia amoebophila UWE25 2780733 YP_007114.1 CDS pc0115 NC_005861.1 183087 183464 R hypothetical protein complement(183087..183464) Candidatus Protochlamydia amoebophila UWE25 2779694 YP_007115.1 CDS pc0116 NC_005861.1 183508 185280 R hypothetical protein complement(183508..185280) Candidatus Protochlamydia amoebophila UWE25 2779695 YP_007116.1 CDS pc0117 NC_005861.1 185231 186907 R hypothetical protein complement(185231..186907) Candidatus Protochlamydia amoebophila UWE25 2780846 YP_007117.1 CDS pc0118 NC_005861.1 186931 188001 R hypothetical protein complement(186931..188001) Candidatus Protochlamydia amoebophila UWE25 2781077 YP_007118.1 CDS batA NC_005861.1 188164 189252 R similar to batA protein; batA protein complement(188164..189252) Candidatus Protochlamydia amoebophila UWE25 2780732 YP_007119.1 CDS cicA NC_005861.1 189477 190094 D similar to protein involved in cell wall biosynthesis, morphogenesis and cell division; protein involved in cell wall biosynthesis, morphogenesis and cell division 189477..190094 Candidatus Protochlamydia amoebophila UWE25 2781156 YP_007120.1 CDS pc0121 NC_005861.1 190212 192869 R hypothetical protein complement(190212..192869) Candidatus Protochlamydia amoebophila UWE25 2781078 YP_007121.1 CDS pc0122 NC_005861.1 193247 193447 D hypothetical protein 193247..193447 Candidatus Protochlamydia amoebophila UWE25 2780076 YP_007122.1 CDS rfbA NC_005861.1 193531 194418 D strongly similar to glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase), rfbA; glucose-1-phosphate thymidylyltransferase 193531..194418 Candidatus Protochlamydia amoebophila UWE25 2780530 YP_007123.1 CDS rfbC NC_005861.1 194405 194959 D strongly similar to dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC 194405..194959 Candidatus Protochlamydia amoebophila UWE25 2780818 YP_007124.1 CDS rfbD NC_005861.1 194956 195840 D similar to dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD; dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD 194956..195840 Candidatus Protochlamydia amoebophila UWE25 2780819 YP_007125.1 CDS rfbB NC_005861.1 195843 196901 D strongly similar to dTDP-glucose 4,6-dehydratase, rfbB; dTDP-glucose 4,6-dehydratase, rfbB 195843..196901 Candidatus Protochlamydia amoebophila UWE25 2780531 YP_007126.1 CDS emrB NC_005861.1 196933 198474 R similar to multidrug resistance membrane translocase, emrB; multidrug resistance membrane translocase, emrB complement(196933..198474) Candidatus Protochlamydia amoebophila UWE25 2779980 YP_007127.1 CDS emrA NC_005861.1 198476 199675 R strongly similar to multidrug resistance protein, emrA; multidrug resistance protein, emrA complement(198476..199675) Candidatus Protochlamydia amoebophila UWE25 2781180 YP_007128.1 CDS pc0129 NC_005861.1 199698 200579 R hypothetical protein complement(199698..200579) Candidatus Protochlamydia amoebophila UWE25 2780077 YP_007129.1 CDS pc0130 NC_005861.1 200655 201104 R hypothetical protein complement(200655..201104) Candidatus Protochlamydia amoebophila UWE25 2780243 YP_007130.1 CDS rluA NC_005861.1 201101 201832 R similar to ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA; ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA complement(201101..201832) Candidatus Protochlamydia amoebophila UWE25 2780182 YP_007131.1 CDS rpsT NC_005861.1 202481 202771 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 202481..202771 Candidatus Protochlamydia amoebophila UWE25 2780858 YP_007132.1 CDS pc0133 NC_005861.1 202912 204597 D similar to acylase and diesterase; acylase and diesterase 202912..204597 Candidatus Protochlamydia amoebophila UWE25 2780244 YP_007133.1 CDS pc0134 NC_005861.1 204546 205289 D hypothetical protein 204546..205289 Candidatus Protochlamydia amoebophila UWE25 2780750 YP_007134.1 CDS pc0135 NC_005861.1 205319 208783 D hypothetical protein 205319..208783 Candidatus Protochlamydia amoebophila UWE25 2781188 YP_007135.1 CDS rpsB NC_005861.1 209069 209887 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 209069..209887 Candidatus Protochlamydia amoebophila UWE25 2779568 YP_007136.2 CDS tsf NC_005861.1 209889 210737 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 209889..210737 Candidatus Protochlamydia amoebophila UWE25 2781312 YP_007137.1 CDS pc0138 NC_005861.1 211196 212272 D hypothetical protein 211196..212272 Candidatus Protochlamydia amoebophila UWE25 2781189 YP_007138.1 CDS mutL NC_005861.1 212429 214387 R similar to methyl-directed mismatch repair (MMR) protein, mutL; methyl-directed mismatch repair (MMR) protein, mutL complement(212429..214387) Candidatus Protochlamydia amoebophila UWE25 2779598 YP_007139.1 CDS pcnB NC_005861.1 214667 215905 D similar to poly A polymerase; poly A polymerase 214667..215905 Candidatus Protochlamydia amoebophila UWE25 2779822 YP_007140.1 CDS pc0141 NC_005861.1 215902 216651 D hypothetical protein 215902..216651 Candidatus Protochlamydia amoebophila UWE25 2781190 YP_007141.1 CDS pc0142 NC_005861.1 216786 217850 D hypothetical protein 216786..217850 Candidatus Protochlamydia amoebophila UWE25 2781320 YP_007142.1 CDS eno NC_005861.1 217864 219168 D strongly similar to phosphopyruvate hydratase (enolase); phosphopyruvate hydratase 217864..219168 Candidatus Protochlamydia amoebophila UWE25 2779981 YP_007143.1 CDS pc0144 NC_005861.1 219175 219570 D hypothetical protein 219175..219570 Candidatus Protochlamydia amoebophila UWE25 2779407 YP_007144.1 CDS pc0145 NC_005861.1 219609 220355 R hypothetical protein complement(219609..220355) Candidatus Protochlamydia amoebophila UWE25 2779408 YP_007145.1 CDS secA NC_005861.1 220752 223814 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 220752..223814 Candidatus Protochlamydia amoebophila UWE25 2780020 YP_007146.1 CDS pc0147 NC_005861.1 224003 224227 R hypothetical protein complement(224003..224227) Candidatus Protochlamydia amoebophila UWE25 2781301 YP_007147.1 CDS aspH NC_005861.1 224284 224895 R similar to aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase); aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase) complement(224284..224895) Candidatus Protochlamydia amoebophila UWE25 2779804 YP_007148.1 CDS arsAb NC_005861.1 225018 226277 D similar to arsenical pump membrane protein; arsenical pump membrane protein 225018..226277 Candidatus Protochlamydia amoebophila UWE25 2779768 YP_007149.1 CDS pc0150 NC_005861.1 226364 226837 R hypothetical protein complement(226364..226837) Candidatus Protochlamydia amoebophila UWE25 2781302 YP_007150.1 CDS lpdA NC_005861.1 227479 228888 D E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 227479..228888 Candidatus Protochlamydia amoebophila UWE25 2780672 YP_007151.1 CDS lipA NC_005861.1 228912 229883 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 228912..229883 Candidatus Protochlamydia amoebophila UWE25 2780836 YP_007152.1 CDS pc0153 NC_005861.1 229898 230818 D hypothetical protein 229898..230818 Candidatus Protochlamydia amoebophila UWE25 2781303 YP_007153.1 CDS pc0154 NC_005861.1 231569 232468 D hypothetical protein 231569..232468 Candidatus Protochlamydia amoebophila UWE25 2781368 YP_007154.1 CDS pc0155 NC_005861.1 233044 234690 R hypothetical protein complement(233044..234690) Candidatus Protochlamydia amoebophila UWE25 2781256 YP_007155.1 CDS pc0156 NC_005861.1 234900 235802 D hypothetical protein 234900..235802 Candidatus Protochlamydia amoebophila UWE25 2781257 YP_007156.1 CDS pc0157 NC_005861.1 235914 236117 D hypothetical protein 235914..236117 Candidatus Protochlamydia amoebophila UWE25 2781026 YP_007157.1 CDS pc0158 NC_005861.1 236401 238191 R hypothetical protein complement(236401..238191) Candidatus Protochlamydia amoebophila UWE25 2781027 YP_007158.1 CDS pc0159 NC_005861.1 238321 239499 R hypothetical protein complement(238321..239499) Candidatus Protochlamydia amoebophila UWE25 2780538 YP_007159.1 CDS yjbC NC_005861.1 239506 240210 R similar to ribosomal large chain pseudouridine synthase B; ribosomal large chain pseudouridine synthase B complement(239506..240210) Candidatus Protochlamydia amoebophila UWE25 2779579 YP_007160.1 CDS pgmA NC_005861.1 240480 241160 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 240480..241160 Candidatus Protochlamydia amoebophila UWE25 2780459 YP_007161.1 CDS nifS NC_005861.1 241167 242348 D similar to iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS; iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS 241167..242348 Candidatus Protochlamydia amoebophila UWE25 2780456 YP_007162.1 CDS pc0163 NC_005861.1 242350 243141 D similar to iron-sulfur cluster assembly protein nifU; iron-sulfur cluster assembly protein nifU 242350..243141 Candidatus Protochlamydia amoebophila UWE25 2780539 YP_007163.1 CDS pc0164 NC_005861.1 243195 243659 R hypothetical protein complement(243195..243659) Candidatus Protochlamydia amoebophila UWE25 2780577 YP_007164.1 CDS birA NC_005861.1 244095 244775 R similar to biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional); biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional) complement(244095..244775) Candidatus Protochlamydia amoebophila UWE25 2781334 YP_007165.1 CDS rodA NC_005861.1 245054 246190 D strongly similar to cell shape (rod)-determining protein; cell shape (rod)-determining protein 245054..246190 Candidatus Protochlamydia amoebophila UWE25 2780517 YP_007166.1 CDS pc0167 NC_005861.1 246205 246690 D hypothetical protein 246205..246690 Candidatus Protochlamydia amoebophila UWE25 2779704 YP_007167.1 CDS tyrP_1 NC_005861.1 246909 248099 D similar to tyrosine/tryptophan transport protein; tyrosine/tryptophan transport protein 246909..248099 Candidatus Protochlamydia amoebophila UWE25 2780306 YP_007168.1 CDS tyrP_2 NC_005861.1 248122 249321 D similar to tyrosine/tryptophan transport protein; tyrosine/tryptophan transport protein 248122..249321 Candidatus Protochlamydia amoebophila UWE25 2780307 YP_007169.1 CDS trpS NC_005861.1 249341 250402 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 249341..250402 Candidatus Protochlamydia amoebophila UWE25 2780473 YP_007170.1 CDS pc0171 NC_005861.1 250492 252972 D similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 250492..252972 Candidatus Protochlamydia amoebophila UWE25 2779705 YP_007171.1 CDS pc0172 NC_005861.1 253342 256755 D similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 253342..256755 Candidatus Protochlamydia amoebophila UWE25 2779706 YP_007172.1 CDS pc0173 NC_005861.1 257123 260713 D similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 257123..260713 Candidatus Protochlamydia amoebophila UWE25 2781425 YP_007173.1 CDS uvrB NC_005861.1 260950 262971 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 260950..262971 Candidatus Protochlamydia amoebophila UWE25 2780840 YP_007174.1 CDS pc0175 NC_005861.1 262984 264057 R hypothetical protein complement(262984..264057) Candidatus Protochlamydia amoebophila UWE25 2780304 YP_007175.1 CDS dinG NC_005861.1 264440 266701 R similar to ATP-dependent DNA helicase dinG; ATP-dependent DNA helicase dinG complement(264440..266701) Candidatus Protochlamydia amoebophila UWE25 2780084 YP_007176.1 CDS sigA NC_005861.1 266766 268430 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor complement(266766..268430) Candidatus Protochlamydia amoebophila UWE25 2780037 YP_007177.1 CDS pc0178 NC_005861.1 268823 269689 D hypothetical protein 268823..269689 Candidatus Protochlamydia amoebophila UWE25 2780305 YP_007178.1 CDS pc0179 NC_005861.1 269784 270650 D hypothetical protein 269784..270650 Candidatus Protochlamydia amoebophila UWE25 2779896 YP_007179.1 CDS pc0180 NC_005861.1 270611 271741 R hypothetical protein complement(270611..271741) Candidatus Protochlamydia amoebophila UWE25 2779897 YP_007180.1 CDS wzt NC_005861.1 271746 273002 R strongly similar to ABC transporter ATP-binding protein wzt; ABC transporter ATP-binding protein complement(271746..273002) Candidatus Protochlamydia amoebophila UWE25 2779630 YP_007181.1 CDS wzm NC_005861.1 273010 273843 R strongly similar to ABC transporter protein wzm; ABC transporter complement(273010..273843) Candidatus Protochlamydia amoebophila UWE25 2780128 YP_007182.1 CDS pc0183 NC_005861.1 273960 274145 R hypothetical protein complement(273960..274145) Candidatus Protochlamydia amoebophila UWE25 2779898 YP_007183.1 CDS pc0184 NC_005861.1 274184 275491 D hypothetical protein 274184..275491 Candidatus Protochlamydia amoebophila UWE25 2780373 YP_007184.1 CDS pc0185 NC_005861.1 275537 276901 R hypothetical protein complement(275537..276901) Candidatus Protochlamydia amoebophila UWE25 2781214 YP_007185.1 CDS wza NC_005861.1 277152 278201 D similar to polysaccharide export protein wza; polysaccharide export protein wza 277152..278201 Candidatus Protochlamydia amoebophila UWE25 2780790 YP_007186.1 CDS wzc NC_005861.1 278269 281214 D similar to Tyrosine-protein kinase; tyrosine-protein kinase 278269..281214 Candidatus Protochlamydia amoebophila UWE25 2780127 YP_007187.1 CDS pc0188 NC_005861.1 281247 282095 D hypothetical protein 281247..282095 Candidatus Protochlamydia amoebophila UWE25 2781215 YP_007188.1 CDS sufB NC_005861.1 282385 283830 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 282385..283830 Candidatus Protochlamydia amoebophila UWE25 2779906 YP_007189.1 CDS sufC NC_005861.1 283938 284702 D strongly similar to ABC transporter ATP-binding protein sufC; ABC transporter ATP-binding protein 283938..284702 Candidatus Protochlamydia amoebophila UWE25 2779907 YP_007190.1 CDS sufD NC_005861.1 284663 286015 D similar to sufD; sufD 284663..286015 Candidatus Protochlamydia amoebophila UWE25 2779908 YP_007191.1 CDS sufS NC_005861.1 286018 287250 D strongly similar to SufS L-cysteine desulfurase/L-selenocysteine lyase; SufS L-cysteine desulfurase/L-selenocysteine lyase 286018..287250 Candidatus Protochlamydia amoebophila UWE25 2779427 YP_007192.1 CDS pc0193 NC_005861.1 287256 288191 D hypothetical protein 287256..288191 Candidatus Protochlamydia amoebophila UWE25 2781362 YP_007193.1 CDS pc0194 NC_005861.1 288554 289759 R hypothetical protein complement(288554..289759) Candidatus Protochlamydia amoebophila UWE25 2781363 YP_007194.1 CDS npr NC_005861.1 290379 291191 R similar to metalloendopeptidase; metalloendopeptidase complement(290379..291191) Candidatus Protochlamydia amoebophila UWE25 2780502 YP_007195.1 CDS glpQ NC_005861.1 291426 292316 R similar to glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(291426..292316) Candidatus Protochlamydia amoebophila UWE25 2779856 YP_007196.1 CDS pc0197 NC_005861.1 292513 292728 R hypothetical protein complement(292513..292728) Candidatus Protochlamydia amoebophila UWE25 2779439 YP_007197.1 CDS ppaB NC_005861.1 293086 294075 D similar to F-box protein; F-box protein 293086..294075 Candidatus Protochlamydia amoebophila UWE25 2779435 YP_007198.1 CDS ppaA NC_005861.1 294072 295085 D similar to F-box protein; F-box protein 294072..295085 Candidatus Protochlamydia amoebophila UWE25 2780079 YP_007199.1 CDS yscT NC_005861.1 295765 296607 R similar to type III secretion inner membrane protein SctT; type III secretion inner membrane protein SctT complement(295765..296607) Candidatus Protochlamydia amoebophila UWE25 2780466 YP_007200.1 CDS sctS NC_005861.1 296692 296928 R strongly similar to type III secretion inner membrane protein SctS; type III secretion inner membrane protein SctS complement(296692..296928) Candidatus Protochlamydia amoebophila UWE25 2780667 YP_007201.1 CDS yscR NC_005861.1 296943 297914 R similar to type III secretion inner membrane protein SctR; type III secretion system protein complement(296943..297914) Candidatus Protochlamydia amoebophila UWE25 2780465 YP_007202.1 CDS yscL NC_005861.1 297925 298596 R similar to type III secretion protein SctL; type III secretion system protein complement(297925..298596) Candidatus Protochlamydia amoebophila UWE25 2780464 YP_007203.1 CDS pc0204 NC_005861.1 298593 299438 R hypothetical protein complement(298593..299438) Candidatus Protochlamydia amoebophila UWE25 2779440 YP_007204.1 CDS yscJ NC_005861.1 299465 300478 R similar to type III secretion protein SctJ; type III secretion protein SctJ complement(299465..300478) Candidatus Protochlamydia amoebophila UWE25 2779888 YP_007205.1 CDS rpsJ NC_005861.1 300758 301093 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(300758..301093) Candidatus Protochlamydia amoebophila UWE25 2781136 YP_007206.1 CDS fusA NC_005861.1 301111 303198 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(301111..303198) Candidatus Protochlamydia amoebophila UWE25 2780446 YP_007207.1 CDS rpsG NC_005861.1 303211 303684 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(303211..303684) Candidatus Protochlamydia amoebophila UWE25 2780383 YP_007208.1 CDS rpsL NC_005861.1 303851 304231 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(303851..304231) Candidatus Protochlamydia amoebophila UWE25 2779588 YP_007209.1 CDS pc0210 NC_005861.1 304867 305571 R hypothetical protein complement(304867..305571) Candidatus Protochlamydia amoebophila UWE25 2779709 YP_007210.1 CDS pc0211 NC_005861.1 305568 306299 R hypothetical protein complement(305568..306299) Candidatus Protochlamydia amoebophila UWE25 2781131 YP_007211.1 CDS pc0212 NC_005861.1 306447 306632 R hypothetical protein complement(306447..306632) Candidatus Protochlamydia amoebophila UWE25 2781132 YP_007212.1 CDS pc0213 NC_005861.1 306676 306891 D hypothetical protein 306676..306891 Candidatus Protochlamydia amoebophila UWE25 2781133 YP_007213.1 CDS tsp NC_005861.1 308026 310041 D similar to carboxy-terminal (= tail-specific) proteinase; carboxy-terminal (= tail-specific) proteinase 308026..310041 Candidatus Protochlamydia amoebophila UWE25 2781313 YP_007214.1 CDS pc0215 NC_005861.1 310067 310249 R hypothetical protein complement(310067..310249) Candidatus Protochlamydia amoebophila UWE25 2781240 YP_007215.1 CDS pc0216 NC_005861.1 310378 310560 R hypothetical protein complement(310378..310560) Candidatus Protochlamydia amoebophila UWE25 2781116 YP_007216.1 CDS rplU NC_005861.1 310596 310940 D strongly similar to 50S ribosomal protein L21; 50S ribosomal protein L21 310596..310940 Candidatus Protochlamydia amoebophila UWE25 2780930 YP_007217.1 CDS rpmA NC_005861.1 310930 311181 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 310930..311181 Candidatus Protochlamydia amoebophila UWE25 2781392 YP_007218.1 CDS obgE NC_005861.1 311300 312313 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 311300..312313 Candidatus Protochlamydia amoebophila UWE25 2779577 YP_007219.1 CDS pc0220 NC_005861.1 312519 313268 R hypothetical protein complement(312519..313268) Candidatus Protochlamydia amoebophila UWE25 2781117 YP_007220.1 CDS rho NC_005861.1 313572 314957 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(313572..314957) Candidatus Protochlamydia amoebophila UWE25 2779863 YP_007221.1 CDS coaE NC_005861.1 314991 315602 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(314991..315602) Candidatus Protochlamydia amoebophila UWE25 2780268 YP_007222.1 CDS polA NC_005861.1 315596 318271 R strongly similar to DNA polymerase I; DNA polymerase I complement(315596..318271) Candidatus Protochlamydia amoebophila UWE25 2779811 YP_007223.1 CDS sohB NC_005861.1 318295 319332 R similar to proteinase IV; proteinase IV complement(318295..319332) Candidatus Protochlamydia amoebophila UWE25 2780106 YP_007224.1 CDS pc0225 NC_005861.1 319680 321629 D hypothetical protein 319680..321629 Candidatus Protochlamydia amoebophila UWE25 2780582 YP_007225.1 CDS yvgR NC_005861.1 321638 322792 D similar to sulfite reductase (NADPH) flavoprotein; sulfite reductase (NADPH) flavoprotein 321638..322792 Candidatus Protochlamydia amoebophila UWE25 2780444 YP_007226.1 CDS ispF NC_005861.1 323095 323574 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(323095..323574) Candidatus Protochlamydia amoebophila UWE25 2780546 YP_007227.1 CDS pc0228 NC_005861.1 323752 324840 D hypothetical protein 323752..324840 Candidatus Protochlamydia amoebophila UWE25 2780583 YP_007228.1 CDS murA NC_005861.1 325018 326415 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 325018..326415 Candidatus Protochlamydia amoebophila UWE25 2781162 YP_007229.1 CDS yodO NC_005861.1 326571 327614 D L-lysine 2,3-aminomutase 326571..327614 Candidatus Protochlamydia amoebophila UWE25 2779629 YP_007230.1 CDS argS NC_005861.1 327625 329379 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(327625..329379) Candidatus Protochlamydia amoebophila UWE25 2779797 YP_007231.1 CDS clpB NC_005861.1 329603 330727 D similar to endopeptidase Clp ATP-binding chain B (heat shock protein); endopeptidase Clp ATP-binding chain B (heat shock protein) 329603..330727 Candidatus Protochlamydia amoebophila UWE25 2781157 YP_007232.1 CDS pc0233 NC_005861.1 331122 331856 D hypothetical protein 331122..331856 Candidatus Protochlamydia amoebophila UWE25 2780584 YP_007233.1 CDS yjeE NC_005861.1 331896 332336 D hypothetical protein 331896..332336 Candidatus Protochlamydia amoebophila UWE25 2779627 YP_007234.1 CDS pc0235 NC_005861.1 332333 332953 D hypothetical protein 332333..332953 Candidatus Protochlamydia amoebophila UWE25 2780071 YP_007235.1 CDS dnaQ_2 NC_005861.1 332959 333708 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 332959..333708 Candidatus Protochlamydia amoebophila UWE25 2779559 YP_007236.1 CDS pc0237 NC_005861.1 333724 334623 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 333724..334623 Candidatus Protochlamydia amoebophila UWE25 2780617 YP_007237.1 CDS hisH NC_005861.1 334627 335220 D similar to glutamine amidotransferase; glutamine amidotransferase 334627..335220 Candidatus Protochlamydia amoebophila UWE25 2780709 YP_007238.1 CDS pgk NC_005861.1 335314 336522 D strongly similar to 3-phosphoglycerate kinase; 3-phosphoglycerate kinase 335314..336522 Candidatus Protochlamydia amoebophila UWE25 2779785 YP_007239.1 CDS ntt_3 NC_005861.1 337044 338654 D strongly similar to ADP/ATP translocase; ADP/ATP translocase 337044..338654 Candidatus Protochlamydia amoebophila UWE25 2780097 YP_007240.1 CDS ntt_2 NC_005861.1 338779 340329 D strongly similar to ADP/ATP translocase; ADP/ATP translocase 338779..340329 Candidatus Protochlamydia amoebophila UWE25 2780096 YP_007241.1 CDS pgsA NC_005861.1 340593 341018 R similar to Phosphatidylglycerophosphate synthase (= CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase ); phosphatidylglycerophosphate synthase (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) complement(340593..341018) Candidatus Protochlamydia amoebophila UWE25 2780460 YP_007242.1 CDS pc0243 NC_005861.1 341231 342376 R hypothetical protein complement(341231..342376) Candidatus Protochlamydia amoebophila UWE25 2780618 YP_007243.1 CDS gltX NC_005861.1 342450 343958 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(342450..343958) Candidatus Protochlamydia amoebophila UWE25 2781428 YP_007244.1 CDS pc0245 NC_005861.1 344266 344631 R hypothetical protein complement(344266..344631) Candidatus Protochlamydia amoebophila UWE25 2780238 YP_007245.1 CDS tsp NC_005861.1 344722 346683 R similar to carboxy-terminal (= tail-specific) proteinase; carboxy-terminal (= tail-specific) proteinase complement(344722..346683) Candidatus Protochlamydia amoebophila UWE25 2780751 YP_007246.1 CDS euo NC_005861.1 347183 347602 D strongly similar to lysine-rich histone-specific protease; lysine-rich histone-specific protease 347183..347602 Candidatus Protochlamydia amoebophila UWE25 2779938 YP_007247.1 CDS pc0248 NC_005861.1 347735 349039 R similar to RNA methyl transferase; RNA methyl transferase complement(347735..349039) Candidatus Protochlamydia amoebophila UWE25 2780239 YP_007248.1 CDS recJ NC_005861.1 349036 350820 R similar to ssDNA-specific exonuclease; ssDNA-specific exonuclease complement(349036..350820) Candidatus Protochlamydia amoebophila UWE25 2779493 YP_007249.1 CDS ntt_1 NC_005861.1 351721 353262 D strongly similar to ADP/ATP translocase; ADP/ATP translocase 351721..353262 Candidatus Protochlamydia amoebophila UWE25 2780095 YP_007250.1 CDS secDf NC_005861.1 353704 358236 D similar to fusion protein export proteins SecD/SecF; fusion protein export proteins SecD/SecF 353704..358236 Candidatus Protochlamydia amoebophila UWE25 2781196 YP_007251.1 CDS pc0252 NC_005861.1 358326 358769 R hypothetical protein complement(358326..358769) Candidatus Protochlamydia amoebophila UWE25 2781418 YP_007252.1 CDS pc0253 NC_005861.1 359175 359672 R hypothetical protein complement(359175..359672) Candidatus Protochlamydia amoebophila UWE25 2781419 YP_007253.1 CDS pc0254 NC_005861.1 360520 361380 D hypothetical protein 360520..361380 Candidatus Protochlamydia amoebophila UWE25 2779899 YP_007254.1 CDS pc0255 NC_005861.1 361356 361679 D hypothetical protein 361356..361679 Candidatus Protochlamydia amoebophila UWE25 2781284 YP_007255.1 CDS ytgA NC_005861.1 361676 362686 D similar to ABC transporter periplasmic substrate-binding protein ytgA; ABC transporter periplasmic substrate-binding protein ytgA 361676..362686 Candidatus Protochlamydia amoebophila UWE25 2781322 YP_007256.1 CDS ytgB NC_005861.1 362661 363503 D similar to ABC transporter ATP-binding protein ytgB; ABC transporter ATP-binding protein ytgB 362661..363503 Candidatus Protochlamydia amoebophila UWE25 2781323 YP_007257.1 CDS ytgC NC_005861.1 363505 364857 D similar to ABC transporter permease ytgC; ABC transporter permease ytgC 363505..364857 Candidatus Protochlamydia amoebophila UWE25 2781324 YP_007258.1 CDS ytgD NC_005861.1 364847 365857 D similar to ABC transporter permease ytgD; ABC transporter permease ytgD 364847..365857 Candidatus Protochlamydia amoebophila UWE25 2780443 YP_007259.1 CDS dxr NC_005861.1 365941 367095 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 365941..367095 Candidatus Protochlamydia amoebophila UWE25 2779453 YP_007260.1 CDS pc0261 NC_005861.1 367144 369105 D hypothetical protein 367144..369105 Candidatus Protochlamydia amoebophila UWE25 2781285 YP_007261.1 CDS pc0262 NC_005861.1 369607 371316 D hypothetical protein 369607..371316 Candidatus Protochlamydia amoebophila UWE25 2781286 YP_007262.1 CDS pc0263 NC_005861.1 371875 372159 D hypothetical protein 371875..372159 Candidatus Protochlamydia amoebophila UWE25 2781287 YP_007263.1 CDS pc0264 NC_005861.1 372491 377908 R hypothetical protein complement(372491..377908) Candidatus Protochlamydia amoebophila UWE25 2780486 YP_007264.1 CDS pc0265 NC_005861.1 378091 378417 D hypothetical protein 378091..378417 Candidatus Protochlamydia amoebophila UWE25 2780487 YP_007265.1 CDS ptsN NC_005861.1 379001 379720 R similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component); nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) complement(379001..379720) Candidatus Protochlamydia amoebophila UWE25 2780233 YP_007266.1 CDS ptsN NC_005861.1 380039 380377 R similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component); nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) complement(380039..380377) Candidatus Protochlamydia amoebophila UWE25 2780234 YP_007267.1 CDS dut NC_005861.1 380512 380964 R strongly similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(380512..380964) Candidatus Protochlamydia amoebophila UWE25 2779452 YP_007268.1 CDS accD NC_005861.1 380973 381890 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(380973..381890) Candidatus Protochlamydia amoebophila UWE25 2781314 YP_007269.1 CDS sodM NC_005861.1 382103 382729 R strongly similar to superoxide dismutase (Mn) precursor; superoxide dismutase (Mn) complement(382103..382729) Candidatus Protochlamydia amoebophila UWE25 2780105 YP_007270.1 CDS hemD NC_005861.1 382941 383594 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(382941..383594) Candidatus Protochlamydia amoebophila UWE25 2781219 YP_007271.1 CDS hemC NC_005861.1 383591 384292 R transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(383591..384292) Candidatus Protochlamydia amoebophila UWE25 2779720 YP_007272.1 CDS sms NC_005861.1 384258 385628 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(384258..385628) Candidatus Protochlamydia amoebophila UWE25 2781209 YP_007273.1 CDS rnc NC_005861.1 385653 386381 R similar to Ribonuclease III; ribonuclease III complement(385653..386381) Candidatus Protochlamydia amoebophila UWE25 2780184 YP_007274.1 CDS pc0275 NC_005861.1 386518 387192 D hypothetical protein 386518..387192 Candidatus Protochlamydia amoebophila UWE25 2781220 YP_007275.1 CDS pc0276 NC_005861.1 387252 387917 D hypothetical protein 387252..387917 Candidatus Protochlamydia amoebophila UWE25 2781221 YP_007276.1 CDS pc0277 NC_005861.1 387890 389107 R hypothetical protein complement(387890..389107) Candidatus Protochlamydia amoebophila UWE25 2779487 YP_007277.1 CDS pc0278 NC_005861.1 389470 390507 D hypothetical protein 389470..390507 Candidatus Protochlamydia amoebophila UWE25 2780422 YP_007278.1 CDS pc0279 NC_005861.1 390366 391883 D hypothetical protein 390366..391883 Candidatus Protochlamydia amoebophila UWE25 2780423 YP_007279.1 CDS pc0280 NC_005861.1 391958 392596 D hypothetical protein 391958..392596 Candidatus Protochlamydia amoebophila UWE25 2781403 YP_007280.1 CDS gcvT NC_005861.1 392664 393698 D strongly similar to glycine cleavage system T protein; glycine cleavage system T protein 392664..393698 Candidatus Protochlamydia amoebophila UWE25 2780943 YP_007281.1 CDS gcvH NC_005861.1 393695 394063 D strongly similar to glycine cleavage system H protein; glycine cleavage system H protein 393695..394063 Candidatus Protochlamydia amoebophila UWE25 2780948 YP_007282.1 CDS gcvP1 NC_005861.1 394064 395404 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 394064..395404 Candidatus Protochlamydia amoebophila UWE25 2780941 YP_007283.1 CDS gcvP2 NC_005861.1 395427 396869 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 395427..396869 Candidatus Protochlamydia amoebophila UWE25 2780942 YP_007284.1 CDS pc0285 NC_005861.1 396871 397257 R hypothetical protein complement(396871..397257) Candidatus Protochlamydia amoebophila UWE25 2781404 YP_007285.1 CDS alkB NC_005861.1 397258 397926 D strongly similar to alkylated DNA repair protein; alkylated DNA repair protein 397258..397926 Candidatus Protochlamydia amoebophila UWE25 2779961 YP_007286.1 CDS cadA NC_005861.1 398281 400206 R similar to cadmium-transporting ATPase; cadmium-transporting ATPase complement(398281..400206) Candidatus Protochlamydia amoebophila UWE25 2780412 YP_007287.1 CDS czcA NC_005861.1 400163 403378 R strongly similar to cation efflux system membrane protein A; cation efflux system membrane protein A complement(400163..403378) Candidatus Protochlamydia amoebophila UWE25 2781444 YP_007288.1 CDS czcB NC_005861.1 403381 404523 R similar to cation efflux system membrane protein B; cation efflux system membrane protein B complement(403381..404523) Candidatus Protochlamydia amoebophila UWE25 2781445 YP_007289.1 CDS czcC NC_005861.1 404528 405682 R similar to cation efflux system membrane protein C; cation efflux system membrane protein C complement(404528..405682) Candidatus Protochlamydia amoebophila UWE25 2781446 YP_007290.1 CDS pc0291 NC_005861.1 405690 405875 D hypothetical protein 405690..405875 Candidatus Protochlamydia amoebophila UWE25 2781103 YP_007291.1 CDS pc0292 NC_005861.1 406333 406533 R hypothetical protein complement(406333..406533) Candidatus Protochlamydia amoebophila UWE25 2781104 YP_007292.1 CDS pc0293 NC_005861.1 406880 407311 R hypothetical protein complement(406880..407311) Candidatus Protochlamydia amoebophila UWE25 2779679 YP_007293.1 CDS pc0294 NC_005861.1 407289 408092 R hypothetical protein complement(407289..408092) Candidatus Protochlamydia amoebophila UWE25 2780899 YP_007294.1 CDS pc0295 NC_005861.1 408856 409203 R hypothetical protein complement(408856..409203) Candidatus Protochlamydia amoebophila UWE25 2780900 YP_007295.1 CDS pc0296 NC_005861.1 409556 409942 R hypothetical protein complement(409556..409942) Candidatus Protochlamydia amoebophila UWE25 2780901 YP_007296.1 CDS pc0297 NC_005861.1 409939 410700 R hypothetical protein complement(409939..410700) Candidatus Protochlamydia amoebophila UWE25 2779671 YP_007297.1 CDS nqrE NC_005861.1 411269 412012 R strongly similar to sodium-translocating NADH dehydrogenase (ubiquinone) chain E; Na(+)-translocating NADH-quinone reductase subunit E complement(411269..412012) Candidatus Protochlamydia amoebophila UWE25 2780484 YP_007298.1 CDS nqrD NC_005861.1 412043 412678 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(412043..412678) Candidatus Protochlamydia amoebophila UWE25 2780483 YP_007299.1 CDS nqrC NC_005861.1 412688 413620 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(412688..413620) Candidatus Protochlamydia amoebophila UWE25 2780482 YP_007300.1 CDS nqrB NC_005861.1 413607 415136 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(413607..415136) Candidatus Protochlamydia amoebophila UWE25 2780504 YP_007301.1 CDS pc0302 NC_005861.1 415400 415876 R hypothetical protein complement(415400..415876) Candidatus Protochlamydia amoebophila UWE25 2780841 YP_007302.1 CDS pc0303 NC_005861.1 416091 421205 D hypothetical protein 416091..421205 Candidatus Protochlamydia amoebophila UWE25 2780842 YP_007303.1 CDS pc0304 NC_005861.1 421278 422255 D hypothetical protein 421278..422255 Candidatus Protochlamydia amoebophila UWE25 2779781 YP_007304.1 CDS comF NC_005861.1 422258 422983 D similar to competence-related protein comF; competence-related protein comF 422258..422983 Candidatus Protochlamydia amoebophila UWE25 2779824 YP_007305.1 CDS corA NC_005861.1 422980 424113 R similar to divalent cation transport protein; divalent cation transport protein complement(422980..424113) Candidatus Protochlamydia amoebophila UWE25 2780662 YP_007306.1 CDS dnaA NC_005861.1 424280 425665 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA complement(424280..425665) Candidatus Protochlamydia amoebophila UWE25 2780075 YP_007307.1 CDS pc0308 NC_005861.1 426070 427242 D hypothetical protein 426070..427242 Candidatus Protochlamydia amoebophila UWE25 2779782 YP_007308.1 CDS pc0309 NC_005861.1 427377 427772 R hypothetical protein complement(427377..427772) Candidatus Protochlamydia amoebophila UWE25 2779783 YP_007309.1 CDS pc0310 NC_005861.1 427775 428224 R hypothetical protein complement(427775..428224) Candidatus Protochlamydia amoebophila UWE25 2780451 YP_007310.1 CDS mraW NC_005861.1 428439 429389 D strongly similar to S-adenosyl-methyltransferase; S-adenosyl-methyltransferase 428439..429389 Candidatus Protochlamydia amoebophila UWE25 2780206 YP_007311.1 CDS pc0312 NC_005861.1 429398 429691 D hypothetical protein 429398..429691 Candidatus Protochlamydia amoebophila UWE25 2779409 YP_007312.1 CDS pbp2 NC_005861.1 429696 431726 D similar to penicillin-binding protein 2 (transglycolase/transpeptidase); penicillin-binding protein 2 429696..431726 Candidatus Protochlamydia amoebophila UWE25 2780864 YP_007313.1 CDS murE NC_005861.1 431742 433220 D similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase 431742..433220 Candidatus Protochlamydia amoebophila UWE25 2780008 YP_007314.1 CDS amiA NC_005861.1 433249 434091 D similar to N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 433249..434091 Candidatus Protochlamydia amoebophila UWE25 2780974 YP_007315.1 CDS pc0316 NC_005861.1 434217 435107 D hypothetical protein 434217..435107 Candidatus Protochlamydia amoebophila UWE25 2779410 YP_007316.1 CDS pgd NC_005861.1 435659 437113 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 435659..437113 Candidatus Protochlamydia amoebophila UWE25 2779789 YP_007317.1 CDS plsC NC_005861.1 437125 437757 R similar to 1-acylglycerol-3-phosphate O-acyltransferase; 1-acylglycerol-3-phosphate O-acyltransferase complement(437125..437757) Candidatus Protochlamydia amoebophila UWE25 2780534 YP_007318.1 CDS cmk NC_005861.1 437772 438458 R strongly similar to cytidylate kinase; cytidylate kinase complement(437772..438458) Candidatus Protochlamydia amoebophila UWE25 2779717 YP_007319.1 CDS cdsA NC_005861.1 438511 439449 R similar to phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(438511..439449) Candidatus Protochlamydia amoebophila UWE25 2781155 YP_007320.1 CDS uppS NC_005861.1 439355 440131 R strongly similar to undecaprenyl pyrophosphate synthetase; undecaprenyl pyrophosphate synthetase complement(439355..440131) Candidatus Protochlamydia amoebophila UWE25 2780837 YP_007321.1 CDS lepA NC_005861.1 440213 442021 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(440213..442021) Candidatus Protochlamydia amoebophila UWE25 2780784 YP_007322.1 CDS pc0323 NC_005861.1 442388 443443 D hypothetical protein 442388..443443 Candidatus Protochlamydia amoebophila UWE25 2780226 YP_007323.1 CDS pc0324 NC_005861.1 443448 445643 R hypothetical protein complement(443448..445643) Candidatus Protochlamydia amoebophila UWE25 2780227 YP_007324.1 CDS pc0325 NC_005861.1 446001 446297 D hypothetical protein 446001..446297 Candidatus Protochlamydia amoebophila UWE25 2779496 YP_007325.1 CDS ykuE NC_005861.1 446484 447449 D hypothetical protein 446484..447449 Candidatus Protochlamydia amoebophila UWE25 2779628 YP_007326.1 CDS ispD NC_005861.1 447451 448143 D similar to 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 447451..448143 Candidatus Protochlamydia amoebophila UWE25 2780541 YP_007327.1 CDS truA NC_005861.1 448130 448900 D similar to tRNA pseudouridylate synthase I; tRNA pseudouridylate synthase I 448130..448900 Candidatus Protochlamydia amoebophila UWE25 2780741 YP_007328.1 CDS pc0329 NC_005861.1 448912 449595 R hypothetical protein complement(448912..449595) Candidatus Protochlamydia amoebophila UWE25 2779497 YP_007329.1 CDS pc0330 NC_005861.1 449618 450544 D hypothetical protein 449618..450544 Candidatus Protochlamydia amoebophila UWE25 2779385 YP_007330.1 CDS pc0331 NC_005861.1 450747 451115 D hypothetical protein 450747..451115 Candidatus Protochlamydia amoebophila UWE25 2780745 YP_007331.1 CDS pc0332 NC_005861.1 451857 452843 D hypothetical protein 451857..452843 Candidatus Protochlamydia amoebophila UWE25 2780746 YP_007332.1 CDS pc0333 NC_005861.1 453112 453372 R hypothetical protein complement(453112..453372) Candidatus Protochlamydia amoebophila UWE25 2780747 YP_007333.1 CDS ppaA NC_005861.1 453695 455545 R hypothetical protein complement(453695..455545) Candidatus Protochlamydia amoebophila UWE25 2780080 YP_007334.1 CDS ppaA NC_005861.1 456154 458082 R hypothetical protein complement(456154..458082) Candidatus Protochlamydia amoebophila UWE25 2779434 YP_007335.1 CDS ppa NC_005861.1 458803 460611 R hypothetical protein complement(458803..460611) Candidatus Protochlamydia amoebophila UWE25 2780078 YP_007336.1 CDS pc0337 NC_005861.1 461015 461458 R hypothetical protein complement(461015..461458) Candidatus Protochlamydia amoebophila UWE25 2779411 YP_007337.1 CDS pc0338 NC_005861.1 461539 462174 R hypothetical protein complement(461539..462174) Candidatus Protochlamydia amoebophila UWE25 2780129 YP_007338.1 CDS pc0339 NC_005861.1 462413 463489 R hypothetical protein complement(462413..463489) Candidatus Protochlamydia amoebophila UWE25 2780130 YP_007339.1 CDS recO NC_005861.1 463657 464352 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 463657..464352 Candidatus Protochlamydia amoebophila UWE25 2779470 YP_007340.1 CDS pc0341 NC_005861.1 464614 465414 D hypothetical protein 464614..465414 Candidatus Protochlamydia amoebophila UWE25 2779471 YP_007341.1 CDS pc0342 NC_005861.1 465740 465925 R hypothetical protein complement(465740..465925) Candidatus Protochlamydia amoebophila UWE25 2779472 YP_007342.1 CDS pc0343 NC_005861.1 466255 467232 R hypothetical protein complement(466255..467232) Candidatus Protochlamydia amoebophila UWE25 2780342 YP_007343.1 CDS pc0344 NC_005861.1 467371 468978 R hypothetical protein complement(467371..468978) Candidatus Protochlamydia amoebophila UWE25 2780449 YP_007344.1 CDS nfo NC_005861.1 469268 470116 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 469268..470116 Candidatus Protochlamydia amoebophila UWE25 2780455 YP_007345.1 CDS asnC NC_005861.1 470251 471654 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 470251..471654 Candidatus Protochlamydia amoebophila UWE25 2779793 YP_007346.1 CDS hemA NC_005861.1 471768 472790 R similar to glutamyl tRNA reductase; glutamyl tRNA reductase complement(471768..472790) Candidatus Protochlamydia amoebophila UWE25 2779718 YP_007347.1 CDS pc0348 NC_005861.1 473214 475064 D hypothetical protein 473214..475064 Candidatus Protochlamydia amoebophila UWE25 2780450 YP_007348.1 CDS pc0349 NC_005861.1 475156 476184 R hypothetical protein complement(475156..476184) Candidatus Protochlamydia amoebophila UWE25 2779473 YP_007349.1 CDS gyrB NC_005861.1 476407 478227 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 476407..478227 Candidatus Protochlamydia amoebophila UWE25 2780175 YP_007350.1 CDS gyrA NC_005861.1 478308 480209 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 478308..480209 Candidatus Protochlamydia amoebophila UWE25 2780173 YP_007351.1 CDS pc0352 NC_005861.1 480323 480946 D hypothetical protein 480323..480946 Candidatus Protochlamydia amoebophila UWE25 2779474 YP_007352.1 CDS pc0353 NC_005861.1 481054 481320 D hypothetical protein 481054..481320 Candidatus Protochlamydia amoebophila UWE25 2780426 YP_007353.1 CDS pc0354 NC_005861.1 481578 481883 D hypothetical protein 481578..481883 Candidatus Protochlamydia amoebophila UWE25 2780427 YP_007354.1 CDS rluD NC_005861.1 481899 482855 D strongly similar to 23S RNA-specific pseudouridine synthase D; 23S RNA-specific pseudouridylate synthase 481899..482855 Candidatus Protochlamydia amoebophila UWE25 2780183 YP_007355.1 CDS dtd NC_005861.1 482872 483327 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 482872..483327 Candidatus Protochlamydia amoebophila UWE25 2780697 YP_007356.1 CDS pc0357 NC_005861.1 483551 483799 D hypothetical protein 483551..483799 Candidatus Protochlamydia amoebophila UWE25 2779771 YP_007357.1 CDS pc0358 NC_005861.1 484092 486749 R hypothetical protein complement(484092..486749) Candidatus Protochlamydia amoebophila UWE25 2780686 YP_007358.1 CDS pc0359 NC_005861.1 486980 487384 R hypothetical protein complement(486980..487384) Candidatus Protochlamydia amoebophila UWE25 2780687 YP_007359.1 CDS pc0360 NC_005861.1 487378 487611 R hypothetical protein complement(487378..487611) Candidatus Protochlamydia amoebophila UWE25 2780688 YP_007360.1 CDS folK NC_005861.1 487833 488348 D similar to multifunctional folic acid synthesis protein; multifunctional folic acid synthesis protein 487833..488348 Candidatus Protochlamydia amoebophila UWE25 2781375 YP_007361.1 CDS kdsA NC_005861.1 488378 489205 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 488378..489205 Candidatus Protochlamydia amoebophila UWE25 2780542 YP_007362.1 CDS pc0363 NC_005861.1 489215 489847 D hypothetical protein 489215..489847 Candidatus Protochlamydia amoebophila UWE25 2780827 YP_007363.1 CDS pc0364 NC_005861.1 489844 491367 D hypothetical protein 489844..491367 Candidatus Protochlamydia amoebophila UWE25 2780715 YP_007364.1 CDS pc0365 NC_005861.1 491367 492107 D hypothetical protein 491367..492107 Candidatus Protochlamydia amoebophila UWE25 2780716 YP_007365.1 CDS ndk NC_005861.1 492179 492907 R strongly similar to nucleoside-diphosphate kinase; nucleoside-diphosphate kinase complement(492179..492907) Candidatus Protochlamydia amoebophila UWE25 2780635 YP_007366.1 CDS pabA NC_005861.1 492937 493515 R strongly similar to p-aminobenzoate synthase; p-aminobenzoate synthase complement(492937..493515) Candidatus Protochlamydia amoebophila UWE25 2779658 YP_007367.1 CDS ndk NC_005861.1 493528 493959 R strongly similar to nucleoside-diphosphate kinase; nucleoside-diphosphate kinase complement(493528..493959) Candidatus Protochlamydia amoebophila UWE25 2780636 YP_007368.1 CDS pheT NC_005861.1 494708 497116 D similar to phenylalanine-tRNA ligase beta chain; phenylalanine-tRNA ligase subunit beta 494708..497116 Candidatus Protochlamydia amoebophila UWE25 2779549 YP_007369.1 CDS pc0370 NC_005861.1 497138 498103 D hypothetical protein 497138..498103 Candidatus Protochlamydia amoebophila UWE25 2780081 YP_007370.1 CDS fdxC NC_005861.1 498124 498399 R similar to ferredoxin [2Fe-2S] IV; ferredoxin [2Fe-2S] IV complement(498124..498399) Candidatus Protochlamydia amoebophila UWE25 2780798 YP_007371.1 CDS pc0372 NC_005861.1 498412 498963 R hypothetical protein complement(498412..498963) Candidatus Protochlamydia amoebophila UWE25 2780082 YP_007372.1 CDS pc0373 NC_005861.1 499192 499419 D hypothetical protein 499192..499419 Candidatus Protochlamydia amoebophila UWE25 2780083 YP_007373.1 CDS pc0374 NC_005861.1 500007 500219 D hypothetical protein 500007..500219 Candidatus Protochlamydia amoebophila UWE25 2781272 YP_007374.1 CDS rapA NC_005861.1 500248 502929 R similar to rapA, a bacterial member of the swi/snf helicase; swi/snf helicase complement(500248..502929) Candidatus Protochlamydia amoebophila UWE25 2779676 YP_007375.1 CDS pc0376 NC_005861.1 503085 503903 D hypothetical protein 503085..503903 Candidatus Protochlamydia amoebophila UWE25 2779528 YP_007376.1 CDS pc0377 NC_005861.1 503909 504166 D hypothetical protein 503909..504166 Candidatus Protochlamydia amoebophila UWE25 2779529 YP_007377.1 CDS pc0378 NC_005861.1 504335 505297 R hypothetical protein complement(504335..505297) Candidatus Protochlamydia amoebophila UWE25 2780428 YP_007378.1 CDS trxA NC_005861.1 505623 505943 D strongly similar to thioredoxin; thioredoxin 505623..505943 Candidatus Protochlamydia amoebophila UWE25 2780744 YP_007379.1 CDS pc0380 NC_005861.1 506091 506312 R hypothetical protein complement(506091..506312) Candidatus Protochlamydia amoebophila UWE25 2780429 YP_007380.1 CDS kefC NC_005861.1 506404 508083 D similar to glutathione-regulated potassium-efflux system protein; glutathione-regulated potassium-efflux system protein 506404..508083 Candidatus Protochlamydia amoebophila UWE25 2780434 YP_007381.1 CDS pc0382 NC_005861.1 508114 508560 R hypothetical protein complement(508114..508560) Candidatus Protochlamydia amoebophila UWE25 2779686 YP_007382.1 CDS mip NC_005861.1 508641 509513 R similar to mip (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase); MIP (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase) complement(508641..509513) Candidatus Protochlamydia amoebophila UWE25 2780204 YP_007383.1 CDS aspS NC_005861.1 509561 511360 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(509561..511360) Candidatus Protochlamydia amoebophila UWE25 2779805 YP_007384.1 CDS hisS NC_005861.1 511526 512800 R strongly similar to histidine-tRNA ligase; histidine-tRNA ligase complement(511526..512800) Candidatus Protochlamydia amoebophila UWE25 2780710 YP_007385.1 CDS pc0386 NC_005861.1 513059 515530 R hypothetical protein complement(513059..515530) Candidatus Protochlamydia amoebophila UWE25 2779687 YP_007386.1 CDS uhpC NC_005861.1 516386 517768 D strongly similar to regulatory protein uhpC; regulatory protein uhpC 516386..517768 Candidatus Protochlamydia amoebophila UWE25 2779724 YP_007387.1 CDS pc0388 NC_005861.1 518988 519470 D hypothetical protein 518988..519470 Candidatus Protochlamydia amoebophila UWE25 2781211 YP_007388.1 CDS dnaE NC_005861.1 519804 523562 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 519804..523562 Candidatus Protochlamydia amoebophila UWE25 2780110 YP_007389.1 CDS pc0390 NC_005861.1 523661 525067 D hypothetical protein 523661..525067 Candidatus Protochlamydia amoebophila UWE25 2779968 YP_007390.1 CDS pc0391 NC_005861.1 525073 525630 D hypothetical protein 525073..525630 Candidatus Protochlamydia amoebophila UWE25 2779969 YP_007391.1 CDS rsbW NC_005861.1 525646 526068 D similar to rsbW, negative regulator of sigma-B activity (switch protein/serine kinase); rsbW, negative regulator of sigma-B activity (switch protein/serine kinase) 525646..526068 Candidatus Protochlamydia amoebophila UWE25 2779589 YP_007392.1 CDS pc0393 NC_005861.1 526096 526593 R hypothetical protein complement(526096..526593) Candidatus Protochlamydia amoebophila UWE25 2779970 YP_007393.1 CDS dac NC_005861.1 526665 528035 D similar to serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein); serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) 526665..528035 Candidatus Protochlamydia amoebophila UWE25 2780875 YP_007394.2 CDS ksgA NC_005861.1 528658 529512 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(528658..529512) Candidatus Protochlamydia amoebophila UWE25 2780585 YP_007395.1 CDS pc0396 NC_005861.1 529521 530648 R hypothetical protein complement(529521..530648) Candidatus Protochlamydia amoebophila UWE25 2779743 YP_007396.1 CDS rsmB NC_005861.1 530661 531794 R similar to 16S rRNA m5C967 SAM-dependent methyltransferase; 16S rRNA m5C967 SAM-dependent methyltransferase complement(530661..531794) Candidatus Protochlamydia amoebophila UWE25 2779590 YP_007397.1 CDS ddlA NC_005861.1 532019 534415 D similar to D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 532019..534415 Candidatus Protochlamydia amoebophila UWE25 2779738 YP_007398.1 CDS zip NC_005861.1 534541 537063 D similar to eucaryotic myosin heavy chain; eucaryotic myosin heavy chain 534541..537063 Candidatus Protochlamydia amoebophila UWE25 2780445 YP_007399.1 CDS cutE NC_005861.1 537373 538962 D transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 537373..538962 Candidatus Protochlamydia amoebophila UWE25 2779648 YP_007400.1 CDS lpxC NC_005861.1 539098 539976 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 539098..539976 Candidatus Protochlamydia amoebophila UWE25 2779982 YP_007401.1 CDS fabZ NC_005861.1 539976 540440 D in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 539976..540440 Candidatus Protochlamydia amoebophila UWE25 2780878 YP_007402.1 CDS lpxA NC_005861.1 540487 541335 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 540487..541335 Candidatus Protochlamydia amoebophila UWE25 2781441 YP_007403.1 CDS fmt NC_005861.1 541335 542291 D strongly similar to methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 541335..542291 Candidatus Protochlamydia amoebophila UWE25 2780498 YP_007404.1 CDS pc0405 NC_005861.1 542366 543193 R hypothetical protein complement(542366..543193) Candidatus Protochlamydia amoebophila UWE25 2780255 YP_007405.1 CDS pc0406 NC_005861.1 543349 543534 R hypothetical protein complement(543349..543534) Candidatus Protochlamydia amoebophila UWE25 2780256 YP_007406.1 CDS pc0407 NC_005861.1 543579 543764 R hypothetical protein complement(543579..543764) Candidatus Protochlamydia amoebophila UWE25 2780735 YP_007407.1 CDS pc0408 NC_005861.1 544280 545284 D hypothetical protein 544280..545284 Candidatus Protochlamydia amoebophila UWE25 2780736 YP_007408.1 CDS pc0409 NC_005861.1 545325 546221 D hypothetical protein 545325..546221 Candidatus Protochlamydia amoebophila UWE25 2780737 YP_007409.1 CDS pc0410 NC_005861.1 546262 547344 D hypothetical protein 546262..547344 Candidatus Protochlamydia amoebophila UWE25 2781181 YP_007410.1 CDS pc0411 NC_005861.1 547458 548015 D hypothetical protein 547458..548015 Candidatus Protochlamydia amoebophila UWE25 2781182 YP_007411.2 CDS rplC NC_005861.1 548994 549659 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 548994..549659 Candidatus Protochlamydia amoebophila UWE25 2780870 YP_007412.2 CDS rplD NC_005861.1 549686 550369 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 549686..550369 Candidatus Protochlamydia amoebophila UWE25 2780871 YP_007413.1 CDS rplW NC_005861.1 550384 550719 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 550384..550719 Candidatus Protochlamydia amoebophila UWE25 2780810 YP_007414.1 CDS rplB NC_005861.1 550737 551582 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 550737..551582 Candidatus Protochlamydia amoebophila UWE25 2780869 YP_007415.1 CDS rpsS NC_005861.1 551585 551848 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 551585..551848 Candidatus Protochlamydia amoebophila UWE25 2780857 YP_007416.1 CDS rplV NC_005861.1 551860 552195 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 551860..552195 Candidatus Protochlamydia amoebophila UWE25 2780809 YP_007417.1 CDS rpsC NC_005861.1 552207 552851 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 552207..552851 Candidatus Protochlamydia amoebophila UWE25 2779569 YP_007418.1 CDS rplP NC_005861.1 552854 553273 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 552854..553273 Candidatus Protochlamydia amoebophila UWE25 2779460 YP_007419.1 CDS rpmC NC_005861.1 553280 553501 D similar to 50S ribosomal protein L29; 50S ribosomal protein L29 553280..553501 Candidatus Protochlamydia amoebophila UWE25 2780821 YP_007420.1 CDS rpsQ NC_005861.1 553504 553749 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 553504..553749 Candidatus Protochlamydia amoebophila UWE25 2779884 YP_007421.1 CDS rplN NC_005861.1 553940 554308 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 553940..554308 Candidatus Protochlamydia amoebophila UWE25 2781037 YP_007422.1 CDS rplX NC_005861.1 554329 554679 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 554329..554679 Candidatus Protochlamydia amoebophila UWE25 2780811 YP_007423.1 CDS rplE NC_005861.1 554693 555250 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 554693..555250 Candidatus Protochlamydia amoebophila UWE25 2779537 YP_007424.1 CDS rpsH NC_005861.1 555265 555666 D strongly similar to 30S ribosomal protein S8; 30S ribosomal protein S8 555265..555666 Candidatus Protochlamydia amoebophila UWE25 2781246 YP_007425.1 CDS rplF NC_005861.1 555682 556230 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 555682..556230 Candidatus Protochlamydia amoebophila UWE25 2779538 YP_007426.1 CDS rplR NC_005861.1 556247 556618 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 556247..556618 Candidatus Protochlamydia amoebophila UWE25 2780927 YP_007427.1 CDS rpsE NC_005861.1 556654 557157 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 556654..557157 Candidatus Protochlamydia amoebophila UWE25 2780381 YP_007428.1 CDS rplO NC_005861.1 557166 557618 D strongly similar to 50S ribosomal protein L15; 50S ribosomal protein L15 557166..557618 Candidatus Protochlamydia amoebophila UWE25 2779459 YP_007429.2 CDS secY NC_005861.1 557858 559228 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 557858..559228 Candidatus Protochlamydia amoebophila UWE25 2780034 YP_007430.1 CDS rpsM NC_005861.1 559348 559716 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 559348..559716 Candidatus Protochlamydia amoebophila UWE25 2781249 YP_007431.1 CDS rpsK NC_005861.1 559735 560142 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 559735..560142 Candidatus Protochlamydia amoebophila UWE25 2781248 YP_007432.1 CDS rpoA NC_005861.1 560293 561408 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 560293..561408 Candidatus Protochlamydia amoebophila UWE25 2781452 YP_007433.1 CDS rplQ NC_005861.1 561419 561847 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 561419..561847 Candidatus Protochlamydia amoebophila UWE25 2779461 YP_007434.1 CDS gapA NC_005861.1 562779 563798 D strongly similar to Glyceraldehyde 3-P dehydrogenase A; glyceraldehyde 3-P dehydrogenase A 562779..563798 Candidatus Protochlamydia amoebophila UWE25 2780574 YP_007435.1 CDS pc0436 NC_005861.1 564296 564646 R hypothetical protein complement(564296..564646) Candidatus Protochlamydia amoebophila UWE25 2779904 YP_007436.1 CDS pc0437 NC_005861.1 564773 565903 D hypothetical protein 564773..565903 Candidatus Protochlamydia amoebophila UWE25 2780644 YP_007437.1 CDS pc0438 NC_005861.1 566155 568146 R hypothetical protein complement(566155..568146) Candidatus Protochlamydia amoebophila UWE25 2780645 YP_007438.1 CDS pc0439 NC_005861.1 568603 568797 D hypothetical protein 568603..568797 Candidatus Protochlamydia amoebophila UWE25 2780072 YP_007439.1 CDS pc0440 NC_005861.1 568827 569585 D hypothetical protein 568827..569585 Candidatus Protochlamydia amoebophila UWE25 2780073 YP_007440.1 CDS pc0441 NC_005861.1 569837 571003 R hypothetical protein complement(569837..571003) Candidatus Protochlamydia amoebophila UWE25 2781369 YP_007441.1 CDS dapF NC_005861.1 571137 571946 R similar to diaminopimelate epimerase; diaminopimelate epimerase complement(571137..571946) Candidatus Protochlamydia amoebophila UWE25 2780463 YP_007442.1 CDS clpP NC_005861.1 571955 572575 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(571955..572575) Candidatus Protochlamydia amoebophila UWE25 2780284 YP_007443.1 CDS glyA NC_005861.1 572695 574170 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(572695..574170) Candidatus Protochlamydia amoebophila UWE25 2781422 YP_007444.1 CDS pc0445 NC_005861.1 574560 575000 R hypothetical protein complement(574560..575000) Candidatus Protochlamydia amoebophila UWE25 2781370 YP_007445.1 CDS pc0446 NC_005861.1 575537 576307 D hypothetical protein 575537..576307 Candidatus Protochlamydia amoebophila UWE25 2779396 YP_007446.1 CDS pc0447 NC_005861.1 576348 576632 R hypothetical protein complement(576348..576632) Candidatus Protochlamydia amoebophila UWE25 2780024 YP_007447.1 CDS pc0448 NC_005861.1 576786 577460 R hypothetical protein complement(576786..577460) Candidatus Protochlamydia amoebophila UWE25 2780025 YP_007448.1 CDS folE NC_005861.1 577540 578214 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(577540..578214) Candidatus Protochlamydia amoebophila UWE25 2781374 YP_007449.1 CDS trmH NC_005861.1 578222 578962 R similar to tRNA (Guanosine-2'-O-)-methyltransferase; tRNA (guanosine-2'-O-)-methyltransferase complement(578222..578962) Candidatus Protochlamydia amoebophila UWE25 2780210 YP_007450.1 CDS pc0451 NC_005861.1 579011 580597 R hypothetical protein complement(579011..580597) Candidatus Protochlamydia amoebophila UWE25 2780026 YP_007451.1 CDS pc0452 NC_005861.1 580876 582192 R hypothetical protein complement(580876..582192) Candidatus Protochlamydia amoebophila UWE25 2780766 YP_007452.1 CDS yaeC NC_005861.1 582419 583225 R similar to ABC transporter substrate binding protein yaeC; ABC transporter substrate binding protein yaeC complement(582419..583225) Candidatus Protochlamydia amoebophila UWE25 2781411 YP_007453.1 CDS yaeE NC_005861.1 583222 583842 R strongly similar to ABC transporter permease yaeE; ABC transporter permease complement(583222..583842) Candidatus Protochlamydia amoebophila UWE25 2781412 YP_007454.1 CDS abc NC_005861.1 583905 584930 R strongly similar to ABC transporter ATP-binding protein abc; ABC transporter ATP-binding protein complement(583905..584930) Candidatus Protochlamydia amoebophila UWE25 2780136 YP_007455.1 CDS pc0456 NC_005861.1 585047 586531 R hypothetical protein complement(585047..586531) Candidatus Protochlamydia amoebophila UWE25 2780439 YP_007456.1 CDS pc0457 NC_005861.1 586642 586839 R hypothetical protein complement(586642..586839) Candidatus Protochlamydia amoebophila UWE25 2780440 YP_007457.1 CDS xerC NC_005861.1 587087 588076 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(587087..588076) Candidatus Protochlamydia amoebophila UWE25 2779631 YP_007458.1 CDS elaC NC_005861.1 588113 589033 R member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(588113..589033) Candidatus Protochlamydia amoebophila UWE25 2781179 YP_007459.1 CDS glpG NC_005861.1 589035 590210 R similar to glpG protein; glpG protein complement(589035..590210) Candidatus Protochlamydia amoebophila UWE25 2779855 YP_007460.1 CDS rfaE NC_005861.1 590214 590726 R strongly similar to ADP-heptose synthase; ADP-heptose synthase complement(590214..590726) Candidatus Protochlamydia amoebophila UWE25 2779593 YP_007461.1 CDS lon NC_005861.1 590741 593248 R similar to endopeptidase (ATP-dependent serine protease) La; endopeptidase (ATP-dependent serine protease) La complement(590741..593248) Candidatus Protochlamydia amoebophila UWE25 2780671 YP_007462.1 CDS pc0463 NC_005861.1 594026 596164 D hypothetical protein 594026..596164 Candidatus Protochlamydia amoebophila UWE25 2779556 YP_007463.1 CDS pc0464 NC_005861.1 596223 598451 D hypothetical protein 596223..598451 Candidatus Protochlamydia amoebophila UWE25 2779557 YP_007464.1 CDS dgt NC_005861.1 598661 599809 D similar to deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ); deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ) 598661..599809 Candidatus Protochlamydia amoebophila UWE25 2780935 YP_007465.1 CDS pc0466 NC_005861.1 599821 600489 D hypothetical protein 599821..600489 Candidatus Protochlamydia amoebophila UWE25 2779558 YP_007466.1 CDS rpsU NC_005861.1 600695 600874 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 600695..600874 Candidatus Protochlamydia amoebophila UWE25 2781134 YP_007467.1 CDS dnaJ NC_005861.1 601060 602220 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 601060..602220 Candidatus Protochlamydia amoebophila UWE25 2780430 YP_007468.1 CDS pc0469 NC_005861.1 602355 603134 R hypothetical protein complement(602355..603134) Candidatus Protochlamydia amoebophila UWE25 2780945 YP_007469.1 CDS ftsK NC_005861.1 603521 606148 R similar to multifunctional cell division protein ftsK; DNA translocase FtsK complement(603521..606148) Candidatus Protochlamydia amoebophila UWE25 2779492 YP_007470.1 CDS bacA NC_005861.1 606082 606855 R similar to bacitracin resistance protein (probable undecaprenol kinase); bacitracin resistance protein ( undecaprenol kinase) complement(606082..606855) Candidatus Protochlamydia amoebophila UWE25 2780731 YP_007471.1 CDS pc0472 NC_005861.1 607191 608744 R hypothetical protein complement(607191..608744) Candidatus Protochlamydia amoebophila UWE25 2780474 YP_007472.1 CDS pc0473 NC_005861.1 608972 609778 D hypothetical protein 608972..609778 Candidatus Protochlamydia amoebophila UWE25 2780475 YP_007473.1 CDS hprK NC_005861.1 609787 610734 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 609787..610734 Candidatus Protochlamydia amoebophila UWE25 2780651 YP_007474.1 CDS ptsH NC_005861.1 610770 611036 D similar to phosphocarrier protein hpr (histidine-containing phosphocarrier protein of the PTS); phosphocarrier protein HPr (histidine-containing phosphocarrier protein of the PTS) 610770..611036 Candidatus Protochlamydia amoebophila UWE25 2779665 YP_007475.1 CDS ptsI NC_005861.1 611040 612818 D similar to phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I); phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I) 611040..612818 Candidatus Protochlamydia amoebophila UWE25 2779667 YP_007476.1 CDS pc0477 NC_005861.1 612933 613229 R hypothetical protein complement(612933..613229) Candidatus Protochlamydia amoebophila UWE25 2780493 YP_007477.1 CDS dnaX NC_005861.1 614128 615696 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(614128..615696) Candidatus Protochlamydia amoebophila UWE25 2779560 YP_007478.1 CDS pc0479 NC_005861.1 615896 617305 D hypothetical protein 615896..617305 Candidatus Protochlamydia amoebophila UWE25 2780494 YP_007479.1 CDS pc0480 NC_005861.1 617479 618996 R hypothetical protein complement(617479..618996) Candidatus Protochlamydia amoebophila UWE25 2780346 YP_007480.1 CDS pc0481 NC_005861.1 619084 619767 R hypothetical protein complement(619084..619767) Candidatus Protochlamydia amoebophila UWE25 2780347 YP_007481.1 CDS pc0482 NC_005861.1 619866 621161 R hypothetical protein complement(619866..621161) Candidatus Protochlamydia amoebophila UWE25 2781371 YP_007482.1 CDS pc0483 NC_005861.1 621413 622114 R hypothetical protein complement(621413..622114) Candidatus Protochlamydia amoebophila UWE25 2780508 YP_007483.1 CDS phoH NC_005861.1 622393 623694 D similar to phosphate starvation-inducible protein (phoH); phosphate starvation-inducible 622393..623694 Candidatus Protochlamydia amoebophila UWE25 2779836 YP_007484.1 CDS ntt_4 NC_005861.1 623880 625175 D similar to ATP/ADP translocase (AATP1) precursor (Arabidopsis thaliana); ATP/ADP translocase 623880..625175 Candidatus Protochlamydia amoebophila UWE25 2780098 YP_007485.1 CDS pc0486 NC_005861.1 625318 625818 D hypothetical protein 625318..625818 Candidatus Protochlamydia amoebophila UWE25 2780509 YP_007486.1 CDS mutT NC_005861.1 626253 626711 D similar to mutT protein; mutT protein 626253..626711 Candidatus Protochlamydia amoebophila UWE25 2779581 YP_007487.1 CDS pc0488 NC_005861.1 626793 627113 R hypothetical protein complement(626793..627113) Candidatus Protochlamydia amoebophila UWE25 2780510 YP_007488.1 CDS pc0489 NC_005861.1 627151 628173 R hypothetical protein complement(627151..628173) Candidatus Protochlamydia amoebophila UWE25 2780826 YP_007489.1 CDS pc0490 NC_005861.1 628170 628799 R hypothetical protein complement(628170..628799) Candidatus Protochlamydia amoebophila UWE25 2780424 YP_007490.1 CDS pc0491 NC_005861.1 628909 629184 D hypothetical protein 628909..629184 Candidatus Protochlamydia amoebophila UWE25 2780425 YP_007491.1 CDS pc0492 NC_005861.1 629289 629633 R hypothetical protein complement(629289..629633) Candidatus Protochlamydia amoebophila UWE25 2780801 YP_007492.1 CDS pc0493 NC_005861.1 630251 630454 D hypothetical protein 630251..630454 Candidatus Protochlamydia amoebophila UWE25 2780802 YP_007493.1 CDS ileS NC_005861.1 631063 634179 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 631063..634179 Candidatus Protochlamydia amoebophila UWE25 2779943 YP_007494.1 CDS pc0495 NC_005861.1 634306 634530 D hypothetical protein 634306..634530 Candidatus Protochlamydia amoebophila UWE25 2780803 YP_007495.1 CDS lepB NC_005861.1 634712 636676 R similar to signal peptidase I; signal peptidase I complement(634712..636676) Candidatus Protochlamydia amoebophila UWE25 2780785 YP_007496.1 CDS pc0497 NC_005861.1 637095 637832 R hypothetical protein complement(637095..637832) Candidatus Protochlamydia amoebophila UWE25 2780046 YP_007497.1 CDS pc0498 NC_005861.1 638378 638704 D hypothetical protein 638378..638704 Candidatus Protochlamydia amoebophila UWE25 2779880 YP_007498.1 CDS pc0499 NC_005861.1 638785 639114 R hypothetical protein complement(638785..639114) Candidatus Protochlamydia amoebophila UWE25 2779881 YP_007499.1 CDS pc0500 NC_005861.1 639171 639449 D hypothetical protein 639171..639449 Candidatus Protochlamydia amoebophila UWE25 2780044 YP_007500.1 CDS pc0501 NC_005861.1 639535 641094 D hypothetical protein 639535..641094 Candidatus Protochlamydia amoebophila UWE25 2780045 YP_007501.1 CDS pc0502 NC_005861.1 641690 641923 R hypothetical protein complement(641690..641923) Candidatus Protochlamydia amoebophila UWE25 2779696 YP_007502.1 CDS alkA NC_005861.1 641984 642397 D similar to DNA-3-methyladenine glycosylase II; DNA-3-methyladenine glycosylase II 641984..642397 Candidatus Protochlamydia amoebophila UWE25 2781144 YP_007503.1 CDS pc0504 NC_005861.1 642551 642751 D hypothetical protein 642551..642751 Candidatus Protochlamydia amoebophila UWE25 2779697 YP_007504.1 CDS pc0505 NC_005861.1 642783 643139 D hypothetical protein 642783..643139 Candidatus Protochlamydia amoebophila UWE25 2780578 YP_007505.1 CDS pc0506 NC_005861.1 643466 643714 D hypothetical protein 643466..643714 Candidatus Protochlamydia amoebophila UWE25 2780476 YP_007506.1 CDS pc0507 NC_005861.1 643702 644052 D hypothetical protein 643702..644052 Candidatus Protochlamydia amoebophila UWE25 2780477 YP_007507.1 CDS pc0508 NC_005861.1 644064 644441 D hypothetical protein 644064..644441 Candidatus Protochlamydia amoebophila UWE25 2780478 YP_007508.1 CDS pc0509 NC_005861.1 644886 645074 D hypothetical protein 644886..645074 Candidatus Protochlamydia amoebophila UWE25 2781268 YP_007509.1 CDS pc0510 NC_005861.1 645148 645771 D hypothetical protein 645148..645771 Candidatus Protochlamydia amoebophila UWE25 2779707 YP_007510.1 CDS pc0511 NC_005861.1 645781 645978 R hypothetical protein complement(645781..645978) Candidatus Protochlamydia amoebophila UWE25 2779708 YP_007511.1 CDS pc0512 NC_005861.1 646109 646447 R similar to antibiotic resistance protein; antibiotic resistance protein complement(646109..646447) Candidatus Protochlamydia amoebophila UWE25 2780499 YP_007512.1 CDS pc0513 NC_005861.1 646473 646742 D hypothetical protein 646473..646742 Candidatus Protochlamydia amoebophila UWE25 2780500 YP_007513.1 CDS pc0514 NC_005861.1 646870 648495 D hypothetical protein 646870..648495 Candidatus Protochlamydia amoebophila UWE25 2780501 YP_007514.1 CDS pc0515 NC_005861.1 648764 648976 D hypothetical protein 648764..648976 Candidatus Protochlamydia amoebophila UWE25 2779602 YP_007515.1 CDS pc0516 NC_005861.1 649576 650175 D hypothetical protein 649576..650175 Candidatus Protochlamydia amoebophila UWE25 2780348 YP_007516.1 CDS pc0517 NC_005861.1 650172 651020 D hypothetical protein 650172..651020 Candidatus Protochlamydia amoebophila UWE25 2780349 YP_007517.1 CDS ada NC_005861.1 651379 651753 D strongly similar to DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase; DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase 651379..651753 Candidatus Protochlamydia amoebophila UWE25 2780723 YP_007518.1 CDS vatB NC_005861.1 652552 653190 D strongly similar to streptogramin A acetyltransferase; streptogramin A acetyltransferase 652552..653190 Candidatus Protochlamydia amoebophila UWE25 2780787 YP_007519.1 CDS pc0520 NC_005861.1 653457 653675 D hypothetical protein 653457..653675 Candidatus Protochlamydia amoebophila UWE25 2780828 YP_007520.1 CDS pc0521 NC_005861.1 654734 654958 D hypothetical protein 654734..654958 Candidatus Protochlamydia amoebophila UWE25 2780829 YP_007521.1 CDS pc0522 NC_005861.1 657339 658319 D hypothetical protein 657339..658319 Candidatus Protochlamydia amoebophila UWE25 2779710 YP_007522.1 CDS pc0523 NC_005861.1 658749 658964 D hypothetical protein 658749..658964 Candidatus Protochlamydia amoebophila UWE25 2779711 YP_007523.1 CDS pc0524 NC_005861.1 659467 659661 D hypothetical protein 659467..659661 Candidatus Protochlamydia amoebophila UWE25 2779843 YP_007524.1 CDS pc0525 NC_005861.1 659716 659901 R hypothetical protein complement(659716..659901) Candidatus Protochlamydia amoebophila UWE25 2780214 YP_007525.1 CDS pc0526 NC_005861.1 660248 660538 R hypothetical protein complement(660248..660538) Candidatus Protochlamydia amoebophila UWE25 2780215 YP_007526.1 CDS pc0527 NC_005861.1 660518 660730 D hypothetical protein 660518..660730 Candidatus Protochlamydia amoebophila UWE25 2780216 YP_007527.1 CDS pc0528 NC_005861.1 660745 661467 D hypothetical protein 660745..661467 Candidatus Protochlamydia amoebophila UWE25 2780485 YP_007528.1 CDS pc0529 NC_005861.1 661631 661867 D hypothetical protein 661631..661867 Candidatus Protochlamydia amoebophila UWE25 2779600 YP_007529.1 CDS pc0530 NC_005861.1 662487 663242 R hypothetical protein complement(662487..663242) Candidatus Protochlamydia amoebophila UWE25 2779601 YP_007530.1 CDS cpt NC_005861.1 663716 663994 D similar to chloramphenicol 3-O phosphotransferase; chloramphenicol 3-O phosphotransferase 663716..663994 Candidatus Protochlamydia amoebophila UWE25 2779645 YP_007531.1 CDS pc0532 NC_005861.1 664721 665398 R hypothetical protein complement(664721..665398) Candidatus Protochlamydia amoebophila UWE25 2780099 YP_007532.1 CDS pc0533 NC_005861.1 665760 665960 R hypothetical protein complement(665760..665960) Candidatus Protochlamydia amoebophila UWE25 2780100 YP_007533.1 CDS pc0534 NC_005861.1 666633 667100 D hypothetical protein 666633..667100 Candidatus Protochlamydia amoebophila UWE25 2780101 YP_007534.1 CDS pc0535 NC_005861.1 667571 667804 D hypothetical protein 667571..667804 Candidatus Protochlamydia amoebophila UWE25 2780748 YP_007535.1 CDS pc0536 NC_005861.1 668299 669543 D hypothetical protein 668299..669543 Candidatus Protochlamydia amoebophila UWE25 2779514 YP_007536.1 CDS pc0537 NC_005861.1 669743 671335 D hypothetical protein 669743..671335 Candidatus Protochlamydia amoebophila UWE25 2779515 YP_007537.1 CDS rtxA NC_005861.1 671495 672583 D similar to RTX-toxin, partial length; RTX-toxin, partial length 671495..672583 Candidatus Protochlamydia amoebophila UWE25 2779574 YP_007538.1 CDS pc0539 NC_005861.1 672733 672972 R hypothetical protein complement(672733..672972) Candidatus Protochlamydia amoebophila UWE25 2779900 YP_007539.1 CDS pc0540 NC_005861.1 673318 673626 R hypothetical protein complement(673318..673626) Candidatus Protochlamydia amoebophila UWE25 2779901 YP_007540.1 CDS def NC_005861.1 673720 674190 R similar to Peptide deformylase; peptide deformylase complement(673720..674190) Candidatus Protochlamydia amoebophila UWE25 2780318 YP_007541.1 CDS pc0542 NC_005861.1 674366 674797 D hypothetical protein 674366..674797 Candidatus Protochlamydia amoebophila UWE25 2779857 YP_007542.1 CDS mocA NC_005861.1 675386 676417 D strongly similar to oxidoreductase MocA family; MocA family oxidoreductase 675386..676417 Candidatus Protochlamydia amoebophila UWE25 2780205 YP_007543.1 CDS nasA NC_005861.1 676516 677739 R similar to nasA protein; to nasA protein complement(676516..677739) Candidatus Protochlamydia amoebophila UWE25 2780675 YP_007544.1 CDS pc0545 NC_005861.1 678519 679436 D hypothetical protein 678519..679436 Candidatus Protochlamydia amoebophila UWE25 2779858 YP_007545.1 CDS map NC_005861.1 679625 680521 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 679625..680521 Candidatus Protochlamydia amoebophila UWE25 2779851 YP_007546.1 CDS pc0547 NC_005861.1 680505 680702 R hypothetical protein complement(680505..680702) Candidatus Protochlamydia amoebophila UWE25 2781382 YP_007547.1 CDS rf-2 NC_005861.1 680787 681143 R similar to peptide chain release factor 2; peptide chain release factor 2 complement(680787..681143) Candidatus Protochlamydia amoebophila UWE25 2779591 YP_007548.1 CDS pc0549 NC_005861.1 681224 681979 D hypothetical protein 681224..681979 Candidatus Protochlamydia amoebophila UWE25 2780728 YP_007549.1 CDS acrA NC_005861.1 682304 683491 D similar to multidrug-efflux transport protein acrA; multidrug-efflux transport protein acrA 682304..683491 Candidatus Protochlamydia amoebophila UWE25 2781018 YP_007550.1 CDS acrB NC_005861.1 683488 686601 D strongly similar to multidrug-efflux transport protein, acrB; multidrug ABC transporter 683488..686601 Candidatus Protochlamydia amoebophila UWE25 2780721 YP_007551.1 CDS oprK NC_005861.1 686609 688078 D similar to outer membrane protein, componenet of multidrug efflux systems; outer membrane protein, componenet of multidrug efflux systems 686609..688078 Candidatus Protochlamydia amoebophila UWE25 2779619 YP_007552.1 CDS pc0553 NC_005861.1 688120 688857 R hypothetical protein complement(688120..688857) Candidatus Protochlamydia amoebophila UWE25 2780729 YP_007553.1 CDS pc0554 NC_005861.1 688976 691048 R hypothetical protein complement(688976..691048) Candidatus Protochlamydia amoebophila UWE25 2780730 YP_007554.1 CDS rfbB NC_005861.1 691066 691983 R similar to dTDP-glucose 4,6-dehydratase, rfbB; dTDP-glucose 4,6-dehydratase, rfbB complement(691066..691983) Candidatus Protochlamydia amoebophila UWE25 2780817 YP_007555.1 CDS pc0556 NC_005861.1 692337 692519 R hypothetical protein complement(692337..692519) Candidatus Protochlamydia amoebophila UWE25 2781140 YP_007556.1 CDS pc0557 NC_005861.1 692797 693012 D hypothetical protein 692797..693012 Candidatus Protochlamydia amoebophila UWE25 2780872 YP_007557.1 CDS pc0558 NC_005861.1 693457 693726 R hypothetical protein complement(693457..693726) Candidatus Protochlamydia amoebophila UWE25 2780873 YP_007558.1 CDS nuoA NC_005861.1 693778 694140 D similar to NADH-ubiquinone oxidoreductase chain A; NADH-ubiquinone oxidoreductase chain A 693778..694140 Candidatus Protochlamydia amoebophila UWE25 2780693 YP_007559.1 CDS nuoB NC_005861.1 694131 694625 D strongly similar to NADH-ubiquinone oxidoreductase chain B; NADH-ubiquinone oxidoreductase subunit B 694131..694625 Candidatus Protochlamydia amoebophila UWE25 2780694 YP_007560.1 CDS nuoC NC_005861.1 694622 695146 D similar to NADH-ubiquinone oxidoreductase chain C/D; NADH-ubiquinone oxidoreductase chain C/D 694622..695146 Candidatus Protochlamydia amoebophila UWE25 2779447 YP_007561.1 CDS nuoD NC_005861.1 695130 696338 D similar to NADH-ubiquinone oxidoreductase chain C/D; NADH-ubiquinone oxidoreductase chain C/D 695130..696338 Candidatus Protochlamydia amoebophila UWE25 2779448 YP_007562.1 CDS nuoE NC_005861.1 696374 696853 D similar to NADH-ubiquinone oxidoreductase chain E; NADH-ubiquinone oxidoreductase chain E 696374..696853 Candidatus Protochlamydia amoebophila UWE25 2779622 YP_007563.1 CDS nuoF NC_005861.1 696846 698144 D strongly similar to NADH-ubiquinone oxidoreductase chain F; NADH-ubiquinone oxidoreductase subunit F 696846..698144 Candidatus Protochlamydia amoebophila UWE25 2779623 YP_007564.1 CDS nuoG NC_005861.1 698148 700469 D similar to NADH-ubiquinone oxidoreductase chain G; NADH-ubiquinone oxidoreductase chain G 698148..700469 Candidatus Protochlamydia amoebophila UWE25 2779624 YP_007565.1 CDS nuoH NC_005861.1 700466 701443 D strongly similar to NADH-ubiquinone oxidoreductase chain H; NADH-ubiquinone oxidoreductase subunit H 700466..701443 Candidatus Protochlamydia amoebophila UWE25 2781137 YP_007566.1 CDS nuoI NC_005861.1 701487 701918 D strongly similar to NADH-ubiquinone oxidoreductase chain I; NADH-ubiquinone oxidoreductase subunit I 701487..701918 Candidatus Protochlamydia amoebophila UWE25 2781138 YP_007567.1 CDS nuoJ NC_005861.1 701922 702434 D similar to NADH-ubiquinone oxidoreductase chain J; NADH-ubiquinone oxidoreductase chain J 701922..702434 Candidatus Protochlamydia amoebophila UWE25 2781139 YP_007568.1 CDS nuoK NC_005861.1 702434 702733 D similar to NADH-ubiquinone oxidoreductase chain K; NADH-ubiquinone oxidoreductase chain K 702434..702733 Candidatus Protochlamydia amoebophila UWE25 2781230 YP_007569.1 CDS nuoL NC_005861.1 702735 704621 D similar to NADH-ubiquinone oxidoreductase chain L; NADH-ubiquinone oxidoreductase chain L 702735..704621 Candidatus Protochlamydia amoebophila UWE25 2781231 YP_007570.1 CDS nuoM NC_005861.1 704614 706059 D similar to NADH-ubiquinone oxidoreductase chain M; NADH-ubiquinone oxidoreductase chain M 704614..706059 Candidatus Protochlamydia amoebophila UWE25 2781232 YP_007571.1 CDS nuoN NC_005861.1 706056 707498 D similar to NADH-ubiquinone oxidoreductase chain N; NADH-ubiquinone oxidoreductase chain N 706056..707498 Candidatus Protochlamydia amoebophila UWE25 2781353 YP_007572.1 CDS pc0573 NC_005861.1 707544 708398 R hypothetical protein complement(707544..708398) Candidatus Protochlamydia amoebophila UWE25 2780641 YP_007573.1 CDS pc0574 NC_005861.1 708523 708729 D hypothetical protein 708523..708729 Candidatus Protochlamydia amoebophila UWE25 2780642 YP_007574.1 CDS pc0575 NC_005861.1 708990 710018 D hypothetical protein 708990..710018 Candidatus Protochlamydia amoebophila UWE25 2780643 YP_007575.1 CDS pc0576 NC_005861.1 710022 710984 D hypothetical protein 710022..710984 Candidatus Protochlamydia amoebophila UWE25 2780669 YP_007576.1 CDS pc0577 NC_005861.1 711124 711729 R hypothetical protein complement(711124..711729) Candidatus Protochlamydia amoebophila UWE25 2780911 YP_007577.1 CDS pc0578 NC_005861.1 711978 713006 D hypothetical protein 711978..713006 Candidatus Protochlamydia amoebophila UWE25 2780912 YP_007578.1 CDS pc0579 NC_005861.1 713169 713774 R hypothetical protein complement(713169..713774) Candidatus Protochlamydia amoebophila UWE25 2780609 YP_007579.1 CDS pc0580 NC_005861.1 714021 715025 D hypothetical protein 714021..715025 Candidatus Protochlamydia amoebophila UWE25 2780610 YP_007580.1 CDS pc0581 NC_005861.1 715059 717281 R hypothetical protein complement(715059..717281) Candidatus Protochlamydia amoebophila UWE25 2780607 YP_007581.1 CDS pc0582 NC_005861.1 717759 718631 D hypothetical protein 717759..718631 Candidatus Protochlamydia amoebophila UWE25 2780608 YP_007582.1 CDS pckI NC_005861.1 718642 718980 D similar to protein kinase C inhibitor 1; protein kinase C inhibitor 1 718642..718980 Candidatus Protochlamydia amoebophila UWE25 2779820 YP_007583.1 CDS pc0584 NC_005861.1 719062 719631 D hypothetical protein 719062..719631 Candidatus Protochlamydia amoebophila UWE25 2781399 YP_007584.1 CDS pc0585 NC_005861.1 719625 721367 D hypothetical protein 719625..721367 Candidatus Protochlamydia amoebophila UWE25 2779615 YP_007585.1 CDS pc0586 NC_005861.1 721591 723264 D hypothetical protein 721591..723264 Candidatus Protochlamydia amoebophila UWE25 2779616 YP_007586.1 CDS pc0587 NC_005861.1 723285 724478 D hypothetical protein 723285..724478 Candidatus Protochlamydia amoebophila UWE25 2779617 YP_007587.1 CDS nasD NC_005861.1 724720 725460 R similar to ATP-binding cassette protein, nasD; ATP-binding cassette protein, nasD complement(724720..725460) Candidatus Protochlamydia amoebophila UWE25 2780676 YP_007588.1 CDS tyrP_3 NC_005861.1 725868 727151 D similar to aromatic amino acid-specific transport protein; aromatic amino acid-specific transport protein 725868..727151 Candidatus Protochlamydia amoebophila UWE25 2780308 YP_007589.1 CDS pc0590 NC_005861.1 727168 727647 D hypothetical protein 727168..727647 Candidatus Protochlamydia amoebophila UWE25 2780783 YP_007590.1 CDS dnaK NC_005861.1 727667 729502 D similar to heat shock protein 70 (chaperone protein dnaK); molecular chaperone DnaK 727667..729502 Candidatus Protochlamydia amoebophila UWE25 2780432 YP_007591.1 CDS pc0592 NC_005861.1 730009 730449 R hypothetical protein complement(730009..730449) Candidatus Protochlamydia amoebophila UWE25 2780330 YP_007592.1 CDS pc0593 NC_005861.1 730554 732146 R hypothetical protein complement(730554..732146) Candidatus Protochlamydia amoebophila UWE25 2780331 YP_007593.1 CDS infA NC_005861.1 732478 732747 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 732478..732747 Candidatus Protochlamydia amoebophila UWE25 2780543 YP_007594.1 CDS tuf NC_005861.1 732977 734161 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 732977..734161 Candidatus Protochlamydia amoebophila UWE25 2780753 YP_007595.1 CDS pc0596 NC_005861.1 734326 734517 D hypothetical protein 734326..734517 Candidatus Protochlamydia amoebophila UWE25 2780406 YP_007596.1 CDS secE NC_005861.1 734520 734807 D similar to preprotein translocase SecE; preprotein translocase SecE 734520..734807 Candidatus Protochlamydia amoebophila UWE25 2781197 YP_007597.1 CDS nusG NC_005861.1 734868 735071 D similar to transcription antitermination factor NusG; transcription antitermination factor NusG 734868..735071 Candidatus Protochlamydia amoebophila UWE25 2779947 YP_007598.1 CDS nusG NC_005861.1 735041 735415 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 735041..735415 Candidatus Protochlamydia amoebophila UWE25 2779948 YP_007599.1 CDS rplK NC_005861.1 735642 736070 D strongly similar to 50S ribosomal protein L11; 50S ribosomal protein L11 735642..736070 Candidatus Protochlamydia amoebophila UWE25 2781035 YP_007600.1 CDS rplA NC_005861.1 736081 736791 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 736081..736791 Candidatus Protochlamydia amoebophila UWE25 2780868 YP_007601.1 CDS rplJ NC_005861.1 736796 737341 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 736796..737341 Candidatus Protochlamydia amoebophila UWE25 2779539 YP_007602.1 CDS rplL NC_005861.1 737402 737791 D strongly similar to 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 737402..737791 Candidatus Protochlamydia amoebophila UWE25 2781036 YP_007603.1 CDS rpoB NC_005861.1 738287 742051 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 738287..742051 Candidatus Protochlamydia amoebophila UWE25 2781453 YP_007604.1 CDS rpoC NC_005861.1 742175 746341 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 742175..746341 Candidatus Protochlamydia amoebophila UWE25 2780141 YP_007605.1 CDS pal NC_005861.1 746750 747217 D strongly similar to peptidoglycan-associated lipoprotein precursor (pal); peptidoglycan-associated lipoprotein (pal) 746750..747217 Candidatus Protochlamydia amoebophila UWE25 2780791 YP_007606.1 CDS pc0607 NC_005861.1 747716 749878 R hypothetical protein complement(747716..749878) Candidatus Protochlamydia amoebophila UWE25 2780407 YP_007607.1 CDS pc0608 NC_005861.1 750367 750549 D hypothetical protein 750367..750549 Candidatus Protochlamydia amoebophila UWE25 2780408 YP_007608.1 CDS pc0609 NC_005861.1 750698 752383 R hypothetical protein complement(750698..752383) Candidatus Protochlamydia amoebophila UWE25 2780603 YP_007609.1 CDS maf NC_005861.1 752406 752990 R strongly similar to septum formation protein; septum formation protein complement(752406..752990) Candidatus Protochlamydia amoebophila UWE25 2779478 YP_007610.1 CDS pc0611 NC_005861.1 753002 753298 R hypothetical protein complement(753002..753298) Candidatus Protochlamydia amoebophila UWE25 2780221 YP_007611.1 CDS pc0612 NC_005861.1 753393 753650 D hypothetical protein 753393..753650 Candidatus Protochlamydia amoebophila UWE25 2780222 YP_007612.1 CDS pc0613 NC_005861.1 753723 753923 D hypothetical protein 753723..753923 Candidatus Protochlamydia amoebophila UWE25 2779956 YP_007613.1 CDS pc0614 NC_005861.1 754039 754347 D hypothetical protein 754039..754347 Candidatus Protochlamydia amoebophila UWE25 2779957 YP_007614.1 CDS pc0615 NC_005861.1 754386 755765 R hypothetical protein complement(754386..755765) Candidatus Protochlamydia amoebophila UWE25 2780279 YP_007615.1 CDS omcB NC_005861.1 756035 757711 R similar to 60 kDa cysteine-rich outer membrane protein; 60 kDa cysteine-rich outer membrane protein complement(756035..757711) Candidatus Protochlamydia amoebophila UWE25 2779865 YP_007616.1 CDS omcA NC_005861.1 758054 758323 R similar to 9 kDa cysteine-rich outer membrane protein; 9 kDa cysteine-rich outer membrane protein complement(758054..758323) Candidatus Protochlamydia amoebophila UWE25 2779949 YP_007617.1 CDS pc0618 NC_005861.1 758693 759532 R hypothetical protein complement(758693..759532) Candidatus Protochlamydia amoebophila UWE25 2780280 YP_007618.1 CDS dxs NC_005861.1 759582 761489 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(759582..761489) Candidatus Protochlamydia amoebophila UWE25 2779454 YP_007619.1 CDS xseB NC_005861.1 761582 761860 R similar to exodeoxyribonuclease VII, small chain; exodeoxyribonuclease VII, small chain complement(761582..761860) Candidatus Protochlamydia amoebophila UWE25 2780266 YP_007620.1 CDS xseA NC_005861.1 761853 763301 R similar to exodeoxyribonuclease VII, large chain; exodeoxyribonuclease VII, large chain complement(761853..763301) Candidatus Protochlamydia amoebophila UWE25 2779633 YP_007621.1 CDS dagA NC_005861.1 763580 764959 D similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent 763580..764959 Candidatus Protochlamydia amoebophila UWE25 2780876 YP_007622.1 CDS nfi NC_005861.1 764994 765701 R strongly similar to endonuclease V (deoxyinosine 3'endonuclease); endonuclease V complement(764994..765701) Candidatus Protochlamydia amoebophila UWE25 2780638 YP_007623.1 CDS pc0624 NC_005861.1 765737 765928 R hypothetical protein complement(765737..765928) Candidatus Protochlamydia amoebophila UWE25 2780685 YP_007624.1 CDS pc0625 NC_005861.1 766207 766698 D hypothetical protein 766207..766698 Candidatus Protochlamydia amoebophila UWE25 2780343 YP_007625.1 CDS pc0626 NC_005861.1 766702 767376 D hypothetical protein 766702..767376 Candidatus Protochlamydia amoebophila UWE25 2780344 YP_007626.1 CDS pc0627 NC_005861.1 767409 767762 D hypothetical protein 767409..767762 Candidatus Protochlamydia amoebophila UWE25 2780345 YP_007627.1 CDS pc0628 NC_005861.1 767989 768606 R hypothetical protein complement(767989..768606) Candidatus Protochlamydia amoebophila UWE25 2780711 YP_007628.1 CDS pc0629 NC_005861.1 769143 769373 D hypothetical protein 769143..769373 Candidatus Protochlamydia amoebophila UWE25 2780338 YP_007629.1 CDS pc0630 NC_005861.1 769488 771008 R similar to Thermostable carboxypeptidase 1; thermostable carboxypeptidase 1 complement(769488..771008) Candidatus Protochlamydia amoebophila UWE25 2780339 YP_007630.1 CDS alr NC_005861.1 771053 773578 R similar to alanine racemase; bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase complement(771053..773578) Candidatus Protochlamydia amoebophila UWE25 2780973 YP_007631.1 CDS pc0632 NC_005861.1 774091 774291 D hypothetical protein 774091..774291 Candidatus Protochlamydia amoebophila UWE25 2780272 YP_007632.1 CDS acrD NC_005861.1 774369 777446 R similar to acriflavin resistance protein D; acriflavin resistance protein D complement(774369..777446) Candidatus Protochlamydia amoebophila UWE25 2780722 YP_007633.1 CDS pc0634 NC_005861.1 777443 778255 R hypothetical protein complement(777443..778255) Candidatus Protochlamydia amoebophila UWE25 2780273 YP_007634.1 CDS tolC NC_005861.1 778257 779525 R similar to outer membrane protein TolC; outer membrane protein TolC complement(778257..779525) Candidatus Protochlamydia amoebophila UWE25 2781092 YP_007635.1 CDS pc0636 NC_005861.1 779863 780945 R hypothetical protein complement(779863..780945) Candidatus Protochlamydia amoebophila UWE25 2780274 YP_007636.1 CDS pc0637 NC_005861.1 780945 782096 R hypothetical protein complement(780945..782096) Candidatus Protochlamydia amoebophila UWE25 2780287 YP_007637.1 CDS pc0638 NC_005861.1 782311 782646 D hypothetical protein 782311..782646 Candidatus Protochlamydia amoebophila UWE25 2780902 YP_007638.1 CDS pc0639 NC_005861.1 782621 783997 D hypothetical protein 782621..783997 Candidatus Protochlamydia amoebophila UWE25 2780903 YP_007639.1 CDS ftsH NC_005861.1 784324 787074 D strongly similar to cell division protein FtsH; cell division protein FtsH 784324..787074 Candidatus Protochlamydia amoebophila UWE25 2779491 YP_007640.1 CDS pc0641 NC_005861.1 787457 788203 R hypothetical protein complement(787457..788203) Candidatus Protochlamydia amoebophila UWE25 2781236 YP_007641.1 CDS cps NC_005861.1 788213 789022 R similar to beta-1,4-galactosyltransferase; beta-1,4-galactosyltransferase complement(788213..789022) Candidatus Protochlamydia amoebophila UWE25 2780663 YP_007642.1 CDS pnp NC_005861.1 789625 791733 R strongly similar to polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase complement(789625..791733) Candidatus Protochlamydia amoebophila UWE25 2779810 YP_007643.1 CDS rpsO NC_005861.1 792333 792602 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(792333..792602) Candidatus Protochlamydia amoebophila UWE25 2779882 YP_007644.1 CDS pc0645 NC_005861.1 793583 793858 R hypothetical protein complement(793583..793858) Candidatus Protochlamydia amoebophila UWE25 2781237 YP_007645.1 CDS pc0646 NC_005861.1 794065 794433 R hypothetical protein complement(794065..794433) Candidatus Protochlamydia amoebophila UWE25 2780812 YP_007646.1 CDS pc0647 NC_005861.1 795065 795748 D hypothetical protein 795065..795748 Candidatus Protochlamydia amoebophila UWE25 2780813 YP_007647.1 CDS pc0648 NC_005861.1 795748 796248 D hypothetical protein 795748..796248 Candidatus Protochlamydia amoebophila UWE25 2780800 YP_007648.1 CDS pc0649 NC_005861.1 796288 796545 D hypothetical protein 796288..796545 Candidatus Protochlamydia amoebophila UWE25 2780658 YP_007649.1 CDS pc0650 NC_005861.1 796529 797716 R hypothetical protein complement(796529..797716) Candidatus Protochlamydia amoebophila UWE25 2780659 YP_007650.1 CDS rpmE2 NC_005861.1 797960 798313 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 797960..798313 Candidatus Protochlamydia amoebophila UWE25 2780822 YP_007651.1 CDS prfA NC_005861.1 798538 799617 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 798538..799617 Candidatus Protochlamydia amoebophila UWE25 2779420 YP_007652.1 CDS hemK NC_005861.1 799626 800465 D HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 799626..800465 Candidatus Protochlamydia amoebophila UWE25 2781343 YP_007653.1 CDS ffh NC_005861.1 800667 802031 D strongly similar to signal recognition particle chain ffh; signal recognition particle protein 800667..802031 Candidatus Protochlamydia amoebophila UWE25 2780799 YP_007654.1 CDS rpsP NC_005861.1 802022 802342 D similar to 30S ribosomal protein S16; 30S ribosomal protein S16 802022..802342 Candidatus Protochlamydia amoebophila UWE25 2779883 YP_007655.1 CDS trmD NC_005861.1 802349 803017 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 802349..803017 Candidatus Protochlamydia amoebophila UWE25 2780209 YP_007656.1 CDS rplS NC_005861.1 803109 803516 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 803109..803516 Candidatus Protochlamydia amoebophila UWE25 2780928 YP_007657.1 CDS rnhB NC_005861.1 803632 804300 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 803632..804300 Candidatus Protochlamydia amoebophila UWE25 2780479 YP_007658.1 CDS pc0659 NC_005861.1 804452 804976 D hypothetical protein 804452..804976 Candidatus Protochlamydia amoebophila UWE25 2780660 YP_007659.1 CDS pc0660 NC_005861.1 805188 806072 D hypothetical protein 805188..806072 Candidatus Protochlamydia amoebophila UWE25 2779885 YP_007660.1 CDS pc0661 NC_005861.1 806676 806876 R hypothetical protein complement(806676..806876) Candidatus Protochlamydia amoebophila UWE25 2779468 YP_007661.1 CDS gmk NC_005861.1 806950 807543 D similar to guanylate kinase; guanylate kinase 806950..807543 Candidatus Protochlamydia amoebophila UWE25 2780165 YP_007662.1 CDS pc0663 NC_005861.1 807568 807891 D hypothetical protein 807568..807891 Candidatus Protochlamydia amoebophila UWE25 2779469 YP_007663.1 CDS pc0664 NC_005861.1 807906 808499 D hypothetical protein 807906..808499 Candidatus Protochlamydia amoebophila UWE25 2780523 YP_007664.1 CDS metG NC_005861.1 808477 810573 D similar to methionine-tRNA ligase; methionine-tRNA ligase 808477..810573 Candidatus Protochlamydia amoebophila UWE25 2781150 YP_007665.1 CDS rpmB NC_005861.1 810803 811078 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(810803..811078) Candidatus Protochlamydia amoebophila UWE25 2780820 YP_007666.1 CDS pc0667 NC_005861.1 811071 811286 R hypothetical protein complement(811071..811286) Candidatus Protochlamydia amoebophila UWE25 2780524 YP_007667.1 CDS pc0668 NC_005861.1 811268 811594 R hypothetical protein complement(811268..811594) Candidatus Protochlamydia amoebophila UWE25 2780525 YP_007668.1 CDS gatB NC_005861.1 811940 813424 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(811940..813424) Candidatus Protochlamydia amoebophila UWE25 2780576 YP_007669.1 CDS gatA NC_005861.1 813421 814890 R strongly similar to glutamyl-tRNA(Gln) amidotransferase chain A; glutamyl-tRNA(Gln) amidotransferase subunit A complement(813421..814890) Candidatus Protochlamydia amoebophila UWE25 2780575 YP_007670.1 CDS gatC NC_005861.1 814907 815206 R similar to glutamyl-tRNA(Gln) amidotransferase chain C; glutamyl-tRNA(Gln) amidotransferase chain C complement(814907..815206) Candidatus Protochlamydia amoebophila UWE25 2780946 YP_007671.1 CDS phrB NC_005861.1 816135 817550 D similar to photolyase; photolyase 816135..817550 Candidatus Protochlamydia amoebophila UWE25 2780532 YP_007672.1 CDS pc0673 NC_005861.1 817677 818528 D hypothetical protein 817677..818528 Candidatus Protochlamydia amoebophila UWE25 2779438 YP_007673.1 CDS pc0674 NC_005861.1 818587 822051 R hypothetical protein complement(818587..822051) Candidatus Protochlamydia amoebophila UWE25 2779475 YP_007674.1 CDS pc0675 NC_005861.1 822370 823332 R hypothetical protein complement(822370..823332) Candidatus Protochlamydia amoebophila UWE25 2779476 YP_007675.1 CDS pc0676 NC_005861.1 823703 825616 D hypothetical protein 823703..825616 Candidatus Protochlamydia amoebophila UWE25 2780144 YP_007676.1 CDS recN NC_005861.1 825630 827255 R similar to DNA repair protein RecN; DNA repair protein RecN complement(825630..827255) Candidatus Protochlamydia amoebophila UWE25 2779494 YP_007677.1 CDS pc0678 NC_005861.1 827261 827701 R hypothetical protein complement(827261..827701) Candidatus Protochlamydia amoebophila UWE25 2780145 YP_007678.1 CDS rnhB NC_005861.1 827796 828701 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII complement(827796..828701) Candidatus Protochlamydia amoebophila UWE25 2780480 YP_007679.1 CDS pc0680 NC_005861.1 828892 829380 D hypothetical protein 828892..829380 Candidatus Protochlamydia amoebophila UWE25 2780673 YP_007680.1 CDS pc0681 NC_005861.1 829377 830546 D hypothetical protein 829377..830546 Candidatus Protochlamydia amoebophila UWE25 2780674 YP_007681.1 CDS truA NC_005861.1 830587 831375 R similar to tRNA-pseudouridine synthase I; tRNA-pseudouridine synthase I complement(830587..831375) Candidatus Protochlamydia amoebophila UWE25 2780742 YP_007682.1 CDS pc0683 NC_005861.1 831348 831947 R hypothetical protein complement(831348..831947) Candidatus Protochlamydia amoebophila UWE25 2780701 YP_007683.1 CDS pc0684 NC_005861.1 831979 832575 R hypothetical protein complement(831979..832575) Candidatus Protochlamydia amoebophila UWE25 2780362 YP_007684.1 CDS aspC NC_005861.1 833564 834826 R catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase complement(833564..834826) Candidatus Protochlamydia amoebophila UWE25 2779795 YP_007685.1 CDS dapA NC_005861.1 834792 835694 R similar to dihydrodipicolinate synthase; dihydrodipicolinate synthase complement(834792..835694) Candidatus Protochlamydia amoebophila UWE25 2780461 YP_007686.1 CDS dapB NC_005861.1 835716 836372 R similar to dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(835716..836372) Candidatus Protochlamydia amoebophila UWE25 2780462 YP_007687.1 CDS pc0688 NC_005861.1 836384 837508 R hypothetical protein complement(836384..837508) Candidatus Protochlamydia amoebophila UWE25 2780363 YP_007688.1 CDS recD NC_005861.1 837508 839673 R similar to exodeoxyribonuclease V; exodeoxyribonuclease V complement(837508..839673) Candidatus Protochlamydia amoebophila UWE25 2781075 YP_007689.1 CDS dnaG NC_005861.1 839989 841767 D synthesizes RNA primers at the replication forks; DNA primase 839989..841767 Candidatus Protochlamydia amoebophila UWE25 2780111 YP_007690.1 CDS pc0691 NC_005861.1 841764 842180 D hypothetical protein 841764..842180 Candidatus Protochlamydia amoebophila UWE25 2780364 YP_007691.1 CDS pc0692 NC_005861.1 842384 842677 D hypothetical protein 842384..842677 Candidatus Protochlamydia amoebophila UWE25 2779799 YP_007692.1 CDS glyS NC_005861.1 843019 846072 R strongly similar to glycyl-tRNA synthetase; glycyl-tRNA synthetase complement(843019..846072) Candidatus Protochlamydia amoebophila UWE25 2781423 YP_007693.1 CDS pc0694 NC_005861.1 846359 846586 R hypothetical protein complement(846359..846586) Candidatus Protochlamydia amoebophila UWE25 2780388 YP_007694.1 CDS pc0695 NC_005861.1 846915 847907 D hypothetical protein 846915..847907 Candidatus Protochlamydia amoebophila UWE25 2780389 YP_007695.1 CDS pc0696 NC_005861.1 848118 848510 D hypothetical protein 848118..848510 Candidatus Protochlamydia amoebophila UWE25 2780397 YP_007696.1 CDS uvrC NC_005861.1 848522 850354 D similar to Excinuclease ABC subunit C; excinuclease ABC subunit C 848522..850354 Candidatus Protochlamydia amoebophila UWE25 2781145 YP_007697.1 CDS pc0698 NC_005861.1 850791 851324 R hypothetical protein complement(850791..851324) Candidatus Protochlamydia amoebophila UWE25 2780398 YP_007698.1 CDS pc0699 NC_005861.1 851359 852702 R hypothetical protein complement(851359..852702) Candidatus Protochlamydia amoebophila UWE25 2780399 YP_007699.1 CDS pc0700 NC_005861.1 852774 853184 R hypothetical protein complement(852774..853184) Candidatus Protochlamydia amoebophila UWE25 2780180 YP_007700.1 CDS thrS NC_005861.1 853772 855433 D similar to threonine-tRNA ligase; threonine-tRNA ligase 853772..855433 Candidatus Protochlamydia amoebophila UWE25 2779713 YP_007701.1 CDS infC NC_005861.1 855435 855989 D strongly similar to translation initiation factor IF-3; translation initiation factor IF-3 855435..855989 Candidatus Protochlamydia amoebophila UWE25 2780544 YP_007702.1 CDS rpmI NC_005861.1 856040 856234 D strongly similar to 50S ribosomal protein L35; 50S ribosomal protein L35 856040..856234 Candidatus Protochlamydia amoebophila UWE25 2781450 YP_007703.1 CDS rplT NC_005861.1 856404 856760 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 856404..856760 Candidatus Protochlamydia amoebophila UWE25 2780929 YP_007704.1 CDS pheS NC_005861.1 856903 857943 D strongly similar to phenylalanine-tRNA ligase alpha chain; phenylalanine-tRNA ligase subunit alpha 856903..857943 Candidatus Protochlamydia amoebophila UWE25 2779548 YP_007705.1 CDS pc0706 NC_005861.1 857963 858859 D hypothetical protein 857963..858859 Candidatus Protochlamydia amoebophila UWE25 2781325 YP_007706.1 CDS waaC NC_005861.1 858856 859944 D similar to heptosyltransferase I; heptosyltransferase I 858856..859944 Candidatus Protochlamydia amoebophila UWE25 2780788 YP_007707.1 CDS pc0708 NC_005861.1 860165 860641 R hypothetical protein complement(860165..860641) Candidatus Protochlamydia amoebophila UWE25 2781326 YP_007708.1 CDS pc0709 NC_005861.1 860930 861859 R hypothetical protein complement(860930..861859) Candidatus Protochlamydia amoebophila UWE25 2779872 YP_007709.1 CDS pc0710 NC_005861.1 862606 863745 R hypothetical protein complement(862606..863745) Candidatus Protochlamydia amoebophila UWE25 2779873 YP_007710.1 CDS pc0711 NC_005861.1 864174 865412 R hypothetical protein complement(864174..865412) Candidatus Protochlamydia amoebophila UWE25 2780627 YP_007711.1 CDS pc0712 NC_005861.1 865436 865654 R hypothetical protein complement(865436..865654) Candidatus Protochlamydia amoebophila UWE25 2780628 YP_007712.1 CDS pc0713 NC_005861.1 866318 867661 R hypothetical protein complement(866318..867661) Candidatus Protochlamydia amoebophila UWE25 2780749 YP_007713.1 CDS pc0714 NC_005861.1 867837 869174 R hypothetical protein complement(867837..869174) Candidatus Protochlamydia amoebophila UWE25 2780332 YP_007714.1 CDS sugE NC_005861.1 869993 870325 R strongly similar to sugE protein; sugE protein complement(869993..870325) Candidatus Protochlamydia amoebophila UWE25 2779428 YP_007715.1 CDS pc0716 NC_005861.1 870666 871103 R hypothetical protein complement(870666..871103) Candidatus Protochlamydia amoebophila UWE25 2780333 YP_007716.1 CDS pc0717 NC_005861.1 871260 871913 D hypothetical protein 871260..871913 Candidatus Protochlamydia amoebophila UWE25 2780334 YP_007717.1 CDS pc0718 NC_005861.1 873090 873965 D hypothetical protein 873090..873965 Candidatus Protochlamydia amoebophila UWE25 2779934 YP_007718.1 CDS pc0719 NC_005861.1 873977 875209 D similar to serine protease; serine protease 873977..875209 Candidatus Protochlamydia amoebophila UWE25 2780001 YP_007719.1 CDS pc0720 NC_005861.1 875458 876237 D similar to serine/threonine phosphoprotein phosphatase; serine/threonine phosphoprotein phosphatase 875458..876237 Candidatus Protochlamydia amoebophila UWE25 2780002 YP_007720.1 CDS nifS NC_005861.1 876188 877357 D similar to cysteine sulfinate desulfinase; cysteine sulfinate desulfinase 876188..877357 Candidatus Protochlamydia amoebophila UWE25 2780457 YP_007721.1 CDS pc0722 NC_005861.1 877384 877707 R hypothetical protein complement(877384..877707) Candidatus Protochlamydia amoebophila UWE25 2780400 YP_007722.1 CDS pc0723 NC_005861.1 877783 878289 R hypothetical protein complement(877783..878289) Candidatus Protochlamydia amoebophila UWE25 2780401 YP_007723.1 CDS pc0724 NC_005861.1 879059 879313 D hypothetical protein 879059..879313 Candidatus Protochlamydia amoebophila UWE25 2780402 YP_007724.1 CDS udhA NC_005861.1 879588 880985 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 879588..880985 Candidatus Protochlamydia amoebophila UWE25 2779723 YP_007725.1 CDS pc0726 NC_005861.1 881150 881644 D hypothetical protein 881150..881644 Candidatus Protochlamydia amoebophila UWE25 2779433 YP_007726.1 CDS pc0727 NC_005861.1 881955 883163 D hypothetical protein 881955..883163 Candidatus Protochlamydia amoebophila UWE25 2780491 YP_007727.1 CDS clpB NC_005861.1 883222 885828 R strongly similar to endopeptidase Clp ATP-binding chain; endopeptidase Clp ATP-binding chain complement(883222..885828) Candidatus Protochlamydia amoebophila UWE25 2780281 YP_007728.1 CDS pc0729 NC_005861.1 886649 889396 R hypothetical protein complement(886649..889396) Candidatus Protochlamydia amoebophila UWE25 2780492 YP_007729.1 CDS pc0730 NC_005861.1 889520 889711 D hypothetical protein 889520..889711 Candidatus Protochlamydia amoebophila UWE25 2780093 YP_007730.1 CDS pc0731 NC_005861.1 890015 890257 D hypothetical protein 890015..890257 Candidatus Protochlamydia amoebophila UWE25 2780094 YP_007731.1 CDS pc0732 NC_005861.1 890559 890744 D hypothetical protein 890559..890744 Candidatus Protochlamydia amoebophila UWE25 2780611 YP_007732.1 CDS pc0733 NC_005861.1 890973 893798 R hypothetical protein complement(890973..893798) Candidatus Protochlamydia amoebophila UWE25 2780612 YP_007733.1 CDS pc0734 NC_005861.1 894351 897197 R hypothetical protein complement(894351..897197) Candidatus Protochlamydia amoebophila UWE25 2779780 YP_007734.1 CDS pc0735 NC_005861.1 897665 900892 D hypothetical protein 897665..900892 Candidatus Protochlamydia amoebophila UWE25 2780908 YP_007735.1 CDS pc0736 NC_005861.1 901100 903697 R hypothetical protein complement(901100..903697) Candidatus Protochlamydia amoebophila UWE25 2780909 YP_007736.1 CDS pc0737 NC_005861.1 904066 904944 D hypothetical protein 904066..904944 Candidatus Protochlamydia amoebophila UWE25 2780910 YP_007737.1 CDS pc0738 NC_005861.1 905583 906056 R hypothetical protein complement(905583..906056) Candidatus Protochlamydia amoebophila UWE25 2781245 YP_007738.1 CDS rhs NC_005861.1 906109 911616 R similar to rhs core protein with extension; rhs core protein with extension complement(906109..911616) Candidatus Protochlamydia amoebophila UWE25 2779864 YP_007739.1 CDS gcpE NC_005861.1 911982 913946 D strongly similar to gcpE protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 911982..913946 Candidatus Protochlamydia amoebophila UWE25 2780947 YP_007740.1 CDS pc0741 NC_005861.1 913962 914546 R hypothetical protein complement(913962..914546) Candidatus Protochlamydia amoebophila UWE25 2780163 YP_007741.1 CDS pc0742 NC_005861.1 914588 916123 R hypothetical protein complement(914588..916123) Candidatus Protochlamydia amoebophila UWE25 2780164 YP_007742.1 CDS pc0743 NC_005861.1 917152 919449 D hypothetical protein 917152..919449 Candidatus Protochlamydia amoebophila UWE25 2780773 YP_007743.1 CDS pc0744 NC_005861.1 920237 920452 R hypothetical protein complement(920237..920452) Candidatus Protochlamydia amoebophila UWE25 2780774 YP_007744.1 CDS malQ NC_005861.1 920708 922378 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(920708..922378) Candidatus Protochlamydia amoebophila UWE25 2779479 YP_007745.1 CDS scc1 NC_005861.1 922288 922746 R strongly similar to type III secretion chaperone sycE; type III secretion chaperone sycE complement(922288..922746) Candidatus Protochlamydia amoebophila UWE25 2779418 YP_007746.1 CDS pc0747 NC_005861.1 922760 923110 R hypothetical protein complement(922760..923110) Candidatus Protochlamydia amoebophila UWE25 2780775 YP_007747.1 CDS pc0748 NC_005861.1 923262 924347 R hypothetical protein complement(923262..924347) Candidatus Protochlamydia amoebophila UWE25 2781151 YP_007748.1 CDS sctV NC_005861.1 924380 926560 R strongly similar to type III secretion pathway protein SctV; type III secretion pathway protein SctV complement(924380..926560) Candidatus Protochlamydia amoebophila UWE25 2779740 YP_007749.1 CDS sctU NC_005861.1 926592 927665 R similar to type III secretion pathway protein sctU; type III secretion system protein complement(926592..927665) Candidatus Protochlamydia amoebophila UWE25 2780668 YP_007750.1 CDS pc0751 NC_005861.1 929017 930831 D hypothetical protein 929017..930831 Candidatus Protochlamydia amoebophila UWE25 2781191 YP_007751.1 CDS pc0752 NC_005861.1 930869 931966 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 930869..931966 Candidatus Protochlamydia amoebophila UWE25 2781192 YP_007752.1 CDS pc0753 NC_005861.1 931994 933136 D hypothetical protein 931994..933136 Candidatus Protochlamydia amoebophila UWE25 2780052 YP_007753.1 CDS pc0754 NC_005861.1 933232 934737 D hypothetical protein 933232..934737 Candidatus Protochlamydia amoebophila UWE25 2780053 YP_007754.1 CDS pc0755 NC_005861.1 934935 935144 R hypothetical protein complement(934935..935144) Candidatus Protochlamydia amoebophila UWE25 2780236 YP_007755.1 CDS pc0756 NC_005861.1 935123 935308 R hypothetical protein complement(935123..935308) Candidatus Protochlamydia amoebophila UWE25 2780237 YP_007756.1 CDS pc0757 NC_005861.1 935523 935750 R hypothetical protein complement(935523..935750) Candidatus Protochlamydia amoebophila UWE25 2780782 YP_007757.1 CDS ribF NC_005861.1 935872 936813 R similar to riboflavin kinase/FMN adenylyltransferase; riboflavin kinase/FMN adenylyltransferase complement(935872..936813) Candidatus Protochlamydia amoebophila UWE25 2780951 YP_007758.1 CDS truB NC_005861.1 936827 937615 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(936827..937615) Candidatus Protochlamydia amoebophila UWE25 2780743 YP_007759.1 CDS rbfA NC_005861.1 937515 937910 R similar to ribosome binding factor A; ribosome binding factor A complement(937515..937910) Candidatus Protochlamydia amoebophila UWE25 2779677 YP_007760.1 CDS infB NC_005861.1 937916 940678 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(937916..940678) Candidatus Protochlamydia amoebophila UWE25 2781082 YP_007761.1 CDS nusA NC_005861.1 940683 941957 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(940683..941957) Candidatus Protochlamydia amoebophila UWE25 2781354 YP_007762.1 CDS pc0763 NC_005861.1 942116 942298 R hypothetical protein complement(942116..942298) Candidatus Protochlamydia amoebophila UWE25 2781083 YP_007763.1 CDS rpsA NC_005861.1 942321 944084 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(942321..944084) Candidatus Protochlamydia amoebophila UWE25 2780143 YP_007764.1 CDS lysC NC_005861.1 944785 945585 D strongly similar to aspartate kinase II precursor; aspartate kinase 944785..945585 Candidatus Protochlamydia amoebophila UWE25 2780646 YP_007765.1 CDS pc0766 NC_005861.1 945656 947563 D hypothetical protein 945656..947563 Candidatus Protochlamydia amoebophila UWE25 2781084 YP_007766.1 CDS braB NC_005861.1 948889 950070 R similar to branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein complement(948889..950070) Candidatus Protochlamydia amoebophila UWE25 2781336 YP_007767.1 CDS rpe NC_005861.1 950578 951309 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 950578..951309 Candidatus Protochlamydia amoebophila UWE25 2780518 YP_007768.1 CDS efp NC_005861.1 951347 951901 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 951347..951901 Candidatus Protochlamydia amoebophila UWE25 2779455 YP_007769.1 CDS pc0770 NC_005861.1 951937 952278 D hypothetical protein 951937..952278 Candidatus Protochlamydia amoebophila UWE25 2779776 YP_007770.1 CDS accB NC_005861.1 952292 952804 D composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 952292..952804 Candidatus Protochlamydia amoebophila UWE25 2779849 YP_007771.1 CDS accC NC_005861.1 952814 954175 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 952814..954175 Candidatus Protochlamydia amoebophila UWE25 2779850 YP_007772.1 CDS pc0773 NC_005861.1 954522 955232 D hypothetical protein 954522..955232 Candidatus Protochlamydia amoebophila UWE25 2781436 YP_007773.1 CDS pc0774 NC_005861.1 955262 955939 D hypothetical protein 955262..955939 Candidatus Protochlamydia amoebophila UWE25 2781437 YP_007774.1 CDS pc0775 NC_005861.1 955999 956691 R hypothetical protein complement(955999..956691) Candidatus Protochlamydia amoebophila UWE25 2779594 YP_007775.1 CDS pc0776 NC_005861.1 956944 957900 R hypothetical protein complement(956944..957900) Candidatus Protochlamydia amoebophila UWE25 2779595 YP_007776.1 CDS pc0777 NC_005861.1 958424 958834 D hypothetical protein 958424..958834 Candidatus Protochlamydia amoebophila UWE25 2779596 YP_007777.1 CDS exoD NC_005861.1 958852 959478 D similar to exopolysaccharide synthesis protein; exopolysaccharide synthesis protein 958852..959478 Candidatus Protochlamydia amoebophila UWE25 2780632 YP_007778.1 CDS pc0779 NC_005861.1 959785 961752 D hypothetical protein 959785..961752 Candidatus Protochlamydia amoebophila UWE25 2781019 YP_007779.1 CDS map1 NC_005861.1 961910 962797 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase complement(961910..962797) Candidatus Protochlamydia amoebophila UWE25 2779852 YP_007780.1 CDS pgi NC_005861.1 963049 964662 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 963049..964662 Candidatus Protochlamydia amoebophila UWE25 2779784 YP_007781.1 CDS pc0782 NC_005861.1 964840 965292 D hypothetical protein 964840..965292 Candidatus Protochlamydia amoebophila UWE25 2781291 YP_007782.1 CDS xerD NC_005861.1 965289 966164 D strongly similar to XerD protein; XerD protein 965289..966164 Candidatus Protochlamydia amoebophila UWE25 2779632 YP_007783.1 CDS pc0784 NC_005861.1 966183 966614 R hypothetical protein complement(966183..966614) Candidatus Protochlamydia amoebophila UWE25 2781292 YP_007784.1 CDS pc0785 NC_005861.1 966701 966919 R hypothetical protein complement(966701..966919) Candidatus Protochlamydia amoebophila UWE25 2780913 YP_007785.1 CDS pc0786 NC_005861.1 966897 967214 R hypothetical protein complement(966897..967214) Candidatus Protochlamydia amoebophila UWE25 2780914 YP_007786.1 CDS lcrH NC_005861.1 967681 968181 D similar to regulatory protein, involved in type III secretion lcrH, sycD; regulatory protein, involved in type III secretion lcrH, sycD 967681..968181 Candidatus Protochlamydia amoebophila UWE25 2780586 YP_007787.1 CDS pc0788 NC_005861.1 968600 968866 D hypothetical protein 968600..968866 Candidatus Protochlamydia amoebophila UWE25 2781282 YP_007788.1 CDS adh3 NC_005861.1 968952 970079 D similar to alcohol dehydrogenase class III; alcohol dehydrogenase class III 968952..970079 Candidatus Protochlamydia amoebophila UWE25 2780453 YP_007789.1 CDS pc0790 NC_005861.1 970131 970868 R hypothetical protein complement(970131..970868) Candidatus Protochlamydia amoebophila UWE25 2781283 YP_007790.1 CDS pc0791 NC_005861.1 970920 972371 R hypothetical protein complement(970920..972371) Candidatus Protochlamydia amoebophila UWE25 2779759 YP_007791.1 CDS pc0792 NC_005861.1 972368 973666 R hypothetical protein complement(972368..973666) Candidatus Protochlamydia amoebophila UWE25 2781408 YP_007792.1 CDS mscL NC_005861.1 973697 974098 R similar to mechanosensitive channel of large conductance; mechanosensitive channel of large conductance complement(973697..974098) Candidatus Protochlamydia amoebophila UWE25 2780220 YP_007793.1 CDS pc0794 NC_005861.1 974519 975682 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase complement(974519..975682) Candidatus Protochlamydia amoebophila UWE25 2781409 YP_007794.1 CDS pc0795 NC_005861.1 975646 976299 R hypothetical protein complement(975646..976299) Candidatus Protochlamydia amoebophila UWE25 2781410 YP_007795.1 CDS pc0796 NC_005861.1 976558 977256 D similar to tonoplast intrinsic protein (Aquaporin); tonoplast intrinsic protein (Aquaporin) 976558..977256 Candidatus Protochlamydia amoebophila UWE25 2779919 YP_007796.1 CDS pc0797 NC_005861.1 977463 978092 D hypothetical protein 977463..978092 Candidatus Protochlamydia amoebophila UWE25 2780664 YP_007797.1 CDS pc0798 NC_005861.1 978268 978489 D hypothetical protein 978268..978489 Candidatus Protochlamydia amoebophila UWE25 2780665 YP_007798.1 CDS pc0799 NC_005861.1 979088 979330 D hypothetical protein 979088..979330 Candidatus Protochlamydia amoebophila UWE25 2780804 YP_007799.1 CDS pc0800 NC_005861.1 979526 980467 R hypothetical protein complement(979526..980467) Candidatus Protochlamydia amoebophila UWE25 2780805 YP_007800.1 CDS tpiA NC_005861.1 980629 981423 D strongly similar to triose-phosphate isomerase; triose-phosphate isomerase 980629..981423 Candidatus Protochlamydia amoebophila UWE25 2780469 YP_007801.1 CDS secG NC_005861.1 981420 981713 D similar to integral membrane component of the sec protein-translocation machinery, secG; preprotein translocase subunit SecG 981420..981713 Candidatus Protochlamydia amoebophila UWE25 2781198 YP_007802.1 CDS def NC_005861.1 982222 982752 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(982222..982752) Candidatus Protochlamydia amoebophila UWE25 2780317 YP_007803.1 CDS pc0804 NC_005861.1 983824 984012 D hypothetical protein 983824..984012 Candidatus Protochlamydia amoebophila UWE25 2781238 YP_007804.1 CDS pc0805 NC_005861.1 984576 986432 D hypothetical protein 984576..986432 Candidatus Protochlamydia amoebophila UWE25 2781239 YP_007805.1 CDS pc0806 NC_005861.1 986478 986885 D hypothetical protein 986478..986885 Candidatus Protochlamydia amoebophila UWE25 2780294 YP_007806.1 CDS pc0807 NC_005861.1 987161 987430 R hypothetical protein complement(987161..987430) Candidatus Protochlamydia amoebophila UWE25 2780295 YP_007807.1 CDS pc0808 NC_005861.1 987525 987890 R hypothetical protein complement(987525..987890) Candidatus Protochlamydia amoebophila UWE25 2780683 YP_007808.1 CDS copB NC_005861.1 988555 990849 D similar to copper-transporting ATPase; copper-transporting ATPase 988555..990849 Candidatus Protochlamydia amoebophila UWE25 2780661 YP_007809.1 CDS tdh NC_005861.1 991301 992329 R converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase complement(991301..992329) Candidatus Protochlamydia amoebophila UWE25 2781402 YP_007810.1 CDS pc0811 NC_005861.1 992567 993757 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(992567..993757) Candidatus Protochlamydia amoebophila UWE25 2780684 YP_007811.1 CDS pc0812 NC_005861.1 993803 994885 R hypothetical protein complement(993803..994885) Candidatus Protochlamydia amoebophila UWE25 2780231 YP_007812.1 CDS pc0813 NC_005861.1 995142 995972 D hypothetical protein 995142..995972 Candidatus Protochlamydia amoebophila UWE25 2780232 YP_007813.1 CDS pc0814 NC_005861.1 996151 996846 D hypothetical protein 996151..996846 Candidatus Protochlamydia amoebophila UWE25 2781429 YP_007814.1 CDS lolD NC_005861.1 996832 997518 R strongly similar to lipoprotein releasing system ATP-binding protein; lipoprotein releasing system ATP-binding protein complement(996832..997518) Candidatus Protochlamydia amoebophila UWE25 2780670 YP_007815.1 CDS pc0816 NC_005861.1 997519 999651 R hypothetical protein complement(997519..999651) Candidatus Protochlamydia amoebophila UWE25 2781430 YP_007816.1 CDS rpmG NC_005861.1 999677 999832 R strongly similar to 50S ribosomal protein L33; 50S ribosomal protein L33 complement(999677..999832) Candidatus Protochlamydia amoebophila UWE25 2781055 YP_007817.1 CDS pc0818 NC_005861.1 999951 1000982 R strongly similar to O-sialoglycoprotein endopeptidase; O-sialoglycoprotein complement(999951..1000982) Candidatus Protochlamydia amoebophila UWE25 2781206 YP_007818.1 CDS devB NC_005861.1 1001027 1001665 R similar to 6-phosphogluconolactonase (6PGL).; 6-phosphogluconolactonase (6PGL). complement(1001027..1001665) Candidatus Protochlamydia amoebophila UWE25 2780319 YP_007819.1 CDS pc0820 NC_005861.1 1001811 1002887 R hypothetical protein complement(1001811..1002887) Candidatus Protochlamydia amoebophila UWE25 2781207 YP_007820.1 CDS zwf NC_005861.1 1003120 1004670 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(1003120..1004670) Candidatus Protochlamydia amoebophila UWE25 2781359 YP_007821.1 CDS pc0822 NC_005861.1 1005929 1008223 D similar to bumetanide-sensitive Na-K-Cl cotransporter; bumetanide-sensitive Na-K-Cl 1005929..1008223 Candidatus Protochlamydia amoebophila UWE25 2781069 YP_007822.1 CDS pc0823 NC_005861.1 1008251 1008655 R hypothetical protein complement(1008251..1008655) Candidatus Protochlamydia amoebophila UWE25 2781070 YP_007823.1 CDS pyrG NC_005861.1 1008693 1010327 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1008693..1010327) Candidatus Protochlamydia amoebophila UWE25 2780271 YP_007824.1 CDS kdsB NC_005861.1 1010297 1011076 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(1010297..1011076) Candidatus Protochlamydia amoebophila UWE25 2780433 YP_007825.1 CDS pc0826 NC_005861.1 1011302 1012252 D hypothetical protein 1011302..1012252 Candidatus Protochlamydia amoebophila UWE25 2779902 YP_007826.1 CDS gseA NC_005861.1 1012343 1013596 D similar to 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO transferase); 3-deoxy-manno-octulosonate 1012343..1013596 Candidatus Protochlamydia amoebophila UWE25 2779609 YP_007827.1 CDS pc0828 NC_005861.1 1013800 1013988 D hypothetical protein 1013800..1013988 Candidatus Protochlamydia amoebophila UWE25 2779903 YP_007828.1 CDS pc0829 NC_005861.1 1014121 1015431 R hypothetical protein complement(1014121..1015431) Candidatus Protochlamydia amoebophila UWE25 2781360 YP_007829.1 CDS pc0830 NC_005861.1 1015945 1016640 D hypothetical protein 1015945..1016640 Candidatus Protochlamydia amoebophila UWE25 2781361 YP_007830.1 CDS pc0831 NC_005861.1 1016676 1016876 R hypothetical protein complement(1016676..1016876) Candidatus Protochlamydia amoebophila UWE25 2781296 YP_007831.1 CDS pc0832 NC_005861.1 1016943 1017128 R hypothetical protein complement(1016943..1017128) Candidatus Protochlamydia amoebophila UWE25 2781297 YP_007832.1 CDS pc0833 NC_005861.1 1017139 1017504 R hypothetical protein complement(1017139..1017504) Candidatus Protochlamydia amoebophila UWE25 2781420 YP_007833.1 CDS pc0834 NC_005861.1 1017926 1018177 D hypothetical protein 1017926..1018177 Candidatus Protochlamydia amoebophila UWE25 2781421 YP_007834.1 CDS pc0835 NC_005861.1 1018312 1019460 D hypothetical protein 1018312..1019460 Candidatus Protochlamydia amoebophila UWE25 2779999 YP_007835.1 CDS pc0836 NC_005861.1 1019516 1019782 D hypothetical protein 1019516..1019782 Candidatus Protochlamydia amoebophila UWE25 2780000 YP_007836.1 CDS pc0837 NC_005861.1 1019945 1020367 D hypothetical protein 1019945..1020367 Candidatus Protochlamydia amoebophila UWE25 2781020 YP_007837.1 CDS pc0838 NC_005861.1 1020923 1022161 D hypothetical protein 1020923..1022161 Candidatus Protochlamydia amoebophila UWE25 2781021 YP_007838.1 CDS pc0839 NC_005861.1 1022505 1023524 D hypothetical protein 1022505..1023524 Candidatus Protochlamydia amoebophila UWE25 2779674 YP_007839.1 CDS pc0840 NC_005861.1 1024058 1024816 D hypothetical protein 1024058..1024816 Candidatus Protochlamydia amoebophila UWE25 2779675 YP_007840.1 CDS pc0841 NC_005861.1 1025051 1025329 D hypothetical protein 1025051..1025329 Candidatus Protochlamydia amoebophila UWE25 2779525 YP_007841.1 CDS pc0842 NC_005861.1 1025830 1026273 D hypothetical protein 1025830..1026273 Candidatus Protochlamydia amoebophila UWE25 2779526 YP_007842.1 CDS pc0843 NC_005861.1 1027059 1028222 D hypothetical protein 1027059..1028222 Candidatus Protochlamydia amoebophila UWE25 2779527 YP_007843.1 CDS pc0844 NC_005861.1 1028259 1028549 D hypothetical protein 1028259..1028549 Candidatus Protochlamydia amoebophila UWE25 2781304 YP_007844.1 CDS pc0845 NC_005861.1 1029490 1029855 D hypothetical protein 1029490..1029855 Candidatus Protochlamydia amoebophila UWE25 2781305 YP_007845.1 CDS pc0846 NC_005861.1 1030508 1031125 D hypothetical protein 1030508..1031125 Candidatus Protochlamydia amoebophila UWE25 2779807 YP_007846.1 CDS pc0847 NC_005861.1 1031367 1031585 R hypothetical protein complement(1031367..1031585) Candidatus Protochlamydia amoebophila UWE25 2779808 YP_007847.1 CDS pc0848 NC_005861.1 1031596 1032087 R hypothetical protein complement(1031596..1032087) Candidatus Protochlamydia amoebophila UWE25 2779971 YP_007848.1 CDS pc0849 NC_005861.1 1032202 1032489 D hypothetical protein 1032202..1032489 Candidatus Protochlamydia amoebophila UWE25 2779972 YP_007849.1 CDS pc0850 NC_005861.1 1032500 1033246 R hypothetical protein complement(1032500..1033246) Candidatus Protochlamydia amoebophila UWE25 2780554 YP_007850.1 CDS pc0851 NC_005861.1 1033589 1034959 D hypothetical protein 1033589..1034959 Candidatus Protochlamydia amoebophila UWE25 2780555 YP_007851.1 CDS pc0852 NC_005861.1 1035458 1036141 D hypothetical protein 1035458..1036141 Candidatus Protochlamydia amoebophila UWE25 2780139 YP_007852.1 CDS pc0853 NC_005861.1 1036141 1036332 D hypothetical protein 1036141..1036332 Candidatus Protochlamydia amoebophila UWE25 2780140 YP_007853.1 CDS pc0854 NC_005861.1 1036717 1036971 R hypothetical protein complement(1036717..1036971) Candidatus Protochlamydia amoebophila UWE25 2781298 YP_007854.1 CDS pc0855 NC_005861.1 1037210 1037641 R hypothetical protein complement(1037210..1037641) Candidatus Protochlamydia amoebophila UWE25 2781299 YP_007855.1 CDS pcm NC_005861.1 1037781 1038413 D strongly similar to L-isoaspartyl protein carboxyl methyltransferase; L-isoaspartyl protein carboxyl methyltransferase 1037781..1038413 Candidatus Protochlamydia amoebophila UWE25 2779821 YP_007856.1 CDS pc0857 NC_005861.1 1038389 1038634 D hypothetical protein 1038389..1038634 Candidatus Protochlamydia amoebophila UWE25 2781300 YP_007857.1 CDS pc0858 NC_005861.1 1039402 1039812 D hypothetical protein 1039402..1039812 Candidatus Protochlamydia amoebophila UWE25 2781028 YP_007858.1 CDS pc0859 NC_005861.1 1040126 1040458 R hypothetical protein complement(1040126..1040458) Candidatus Protochlamydia amoebophila UWE25 2781029 YP_007859.1 CDS pc0860 NC_005861.1 1040634 1041374 D hypothetical protein 1040634..1041374 Candidatus Protochlamydia amoebophila UWE25 2781438 YP_007860.1 CDS pc0861 NC_005861.1 1041428 1042282 D hypothetical protein 1041428..1042282 Candidatus Protochlamydia amoebophila UWE25 2781439 YP_007861.1 CDS pc0862 NC_005861.1 1042290 1044116 D hypothetical protein 1042290..1044116 Candidatus Protochlamydia amoebophila UWE25 2780987 YP_007862.1 CDS pc0863 NC_005861.1 1044121 1045134 R hypothetical protein complement(1044121..1045134) Candidatus Protochlamydia amoebophila UWE25 2780988 YP_007863.1 CDS surE NC_005861.1 1045342 1046127 D similar to acid phosphatase; acid phosphatase 1045342..1046127 Candidatus Protochlamydia amoebophila UWE25 2781128 YP_007864.1 CDS acnB NC_005861.1 1046258 1049104 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1046258..1049104 Candidatus Protochlamydia amoebophila UWE25 2781316 YP_007865.1 CDS pc0866 NC_005861.1 1049131 1049316 R hypothetical protein complement(1049131..1049316) Candidatus Protochlamydia amoebophila UWE25 2780738 YP_007866.1 CDS pc0867 NC_005861.1 1049313 1050011 R hypothetical protein complement(1049313..1050011) Candidatus Protochlamydia amoebophila UWE25 2780739 YP_007867.1 CDS pc0868 NC_005861.1 1050549 1050938 D hypothetical protein 1050549..1050938 Candidatus Protochlamydia amoebophila UWE25 2780740 YP_007868.1 CDS pc0869 NC_005861.1 1051410 1052369 D hypothetical protein 1051410..1052369 Candidatus Protochlamydia amoebophila UWE25 2781212 YP_007869.1 CDS pc0870 NC_005861.1 1052384 1053274 R hypothetical protein complement(1052384..1053274) Candidatus Protochlamydia amoebophila UWE25 2781213 YP_007870.1 CDS potA NC_005861.1 1053647 1054768 D strongly similar to spermidin/putrescin transport ATP-binding protein, component of ATP-transporter system; sperimidine/putrescine ABC transporter ATP-binding protein 1053647..1054768 Candidatus Protochlamydia amoebophila UWE25 2779812 YP_007871.1 CDS potB NC_005861.1 1054716 1055630 D strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system; spermidine/putrescine ABC transporter permease 1054716..1055630 Candidatus Protochlamydia amoebophila UWE25 2780324 YP_007872.1 CDS potC NC_005861.1 1055627 1056394 D strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system; spermidine/putrescine ABC transporter permease 1055627..1056394 Candidatus Protochlamydia amoebophila UWE25 2780325 YP_007873.1 CDS potD NC_005861.1 1056397 1057434 D similar to spermidine/putrescine-binding protein precursor, component of ABC transporter system; spermidine/putrescine-binding protein , component of ABC transporter system 1056397..1057434 Candidatus Protochlamydia amoebophila UWE25 2780326 YP_007874.1 CDS pc0875 NC_005861.1 1057923 1058108 R hypothetical protein complement(1057923..1058108) Candidatus Protochlamydia amoebophila UWE25 2781005 YP_007875.1 CDS pc0876 NC_005861.1 1058333 1058533 R hypothetical protein complement(1058333..1058533) Candidatus Protochlamydia amoebophila UWE25 2781006 YP_007876.1 CDS mgtE NC_005861.1 1058669 1060033 D similar to Mg2+ transporter; Mg2+ transporter 1058669..1060033 Candidatus Protochlamydia amoebophila UWE25 2780599 YP_007877.1 CDS sdaB NC_005861.1 1060300 1061691 D strongly similar to L-serine ammonia-lyase; L-serine ammonia-lyase 1060300..1061691 Candidatus Protochlamydia amoebophila UWE25 2779741 YP_007878.1 CDS pc0879 NC_005861.1 1061787 1062578 D hypothetical protein 1061787..1062578 Candidatus Protochlamydia amoebophila UWE25 2779990 YP_007879.1 CDS pfkA NC_005861.1 1062582 1064243 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 1062582..1064243 Candidatus Protochlamydia amoebophila UWE25 2779788 YP_007880.1 CDS pc0881 NC_005861.1 1064346 1064948 D hypothetical protein 1064346..1064948 Candidatus Protochlamydia amoebophila UWE25 2779991 YP_007881.1 CDS aroA NC_005861.1 1065071 1067890 D similar to 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase); 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase) 1065071..1067890 Candidatus Protochlamydia amoebophila UWE25 2779798 YP_007882.1 CDS aroL NC_005861.1 1067824 1068435 D similar to shikimate kinase precursor; shikimate kinase 1067824..1068435 Candidatus Protochlamydia amoebophila UWE25 2779775 YP_007883.1 CDS aroC NC_005861.1 1068425 1069528 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1068425..1069528 Candidatus Protochlamydia amoebophila UWE25 2779773 YP_007884.1 CDS pc0885 NC_005861.1 1069844 1070581 D hypothetical protein 1069844..1070581 Candidatus Protochlamydia amoebophila UWE25 2779992 YP_007885.1 CDS pc0886 NC_005861.1 1070633 1071334 D hypothetical protein 1070633..1071334 Candidatus Protochlamydia amoebophila UWE25 2780296 YP_007886.1 CDS pc0887 NC_005861.1 1071450 1071836 D hypothetical protein 1071450..1071836 Candidatus Protochlamydia amoebophila UWE25 2780297 YP_007887.1 CDS pc0888 NC_005861.1 1072205 1074166 D hypothetical protein 1072205..1074166 Candidatus Protochlamydia amoebophila UWE25 2779672 YP_007888.1 CDS ribH NC_005861.1 1074499 1075017 R strongly similar to riboflavin synthase beta chain; riboflavin synthase subunit beta complement(1074499..1075017) Candidatus Protochlamydia amoebophila UWE25 2780952 YP_007889.1 CDS ribA NC_005861.1 1075048 1076286 R strongly similar to 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1075048..1076286) Candidatus Protochlamydia amoebophila UWE25 2780041 YP_007890.1 CDS ribC NC_005861.1 1076294 1076899 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1076294..1076899) Candidatus Protochlamydia amoebophila UWE25 2780042 YP_007891.1 CDS mutM NC_005861.1 1076920 1077750 R similar to formamidopyrimidine-DNA glycosidase; formamidopyrimidine-DNA glycosidase complement(1076920..1077750) Candidatus Protochlamydia amoebophila UWE25 2779599 YP_007892.1 CDS rbp NC_005861.1 1078277 1078615 D strongly similar to nucleic acid-binding protein; nucleic acid-binding protein 1078277..1078615 Candidatus Protochlamydia amoebophila UWE25 2779800 YP_007893.1 CDS pc0894 NC_005861.1 1078839 1082885 R hypothetical protein complement(1078839..1082885) Candidatus Protochlamydia amoebophila UWE25 2779673 YP_007894.1 CDS pc0895 NC_005861.1 1083379 1084992 R similar to outer membrane protein; outer membrane protein complement(1083379..1084992) Candidatus Protochlamydia amoebophila UWE25 2780954 YP_007895.1 CDS pc0896 NC_005861.1 1085168 1086589 R hypothetical protein complement(1085168..1086589) Candidatus Protochlamydia amoebophila UWE25 2780955 YP_007896.1 CDS pc0897 NC_005861.1 1086598 1086780 D hypothetical protein 1086598..1086780 Candidatus Protochlamydia amoebophila UWE25 2780956 YP_007897.1 CDS rbn NC_005861.1 1087367 1088536 R similar to RNase BN, tRNA processing enzyme; RNase BN, tRNA processing enzyme complement(1087367..1088536) Candidatus Protochlamydia amoebophila UWE25 2779678 YP_007898.1 CDS pc0899 NC_005861.1 1088807 1091212 R hypothetical protein complement(1088807..1091212) Candidatus Protochlamydia amoebophila UWE25 2780957 YP_007899.1 CDS pc0900 NC_005861.1 1091483 1092088 D hypothetical protein 1091483..1092088 Candidatus Protochlamydia amoebophila UWE25 2780958 YP_007900.1 CDS pc0901 NC_005861.1 1092119 1093099 D hypothetical protein 1092119..1093099 Candidatus Protochlamydia amoebophila UWE25 2781061 YP_007901.1 CDS pc0902 NC_005861.1 1093201 1093569 R hypothetical protein complement(1093201..1093569) Candidatus Protochlamydia amoebophila UWE25 2781062 YP_007902.1 CDS pc0903 NC_005861.1 1093491 1094006 R hypothetical protein complement(1093491..1094006) Candidatus Protochlamydia amoebophila UWE25 2780160 YP_007903.1 CDS rgpB NC_005861.1 1094443 1095381 D strongly similar to rhamnosyltransferase; rhamnosyltransferase 1094443..1095381 Candidatus Protochlamydia amoebophila UWE25 2779862 YP_007904.1 CDS pc0905 NC_005861.1 1095457 1097106 R hypothetical protein complement(1095457..1097106) Candidatus Protochlamydia amoebophila UWE25 2780161 YP_007905.1 CDS pc0906 NC_005861.1 1097384 1098700 D hypothetical protein 1097384..1098700 Candidatus Protochlamydia amoebophila UWE25 2780162 YP_007906.1 CDS pc0907 NC_005861.1 1098715 1100529 R hypothetical protein complement(1098715..1100529) Candidatus Protochlamydia amoebophila UWE25 2780371 YP_007907.1 CDS pc0908 NC_005861.1 1101102 1101569 R hypothetical protein complement(1101102..1101569) Candidatus Protochlamydia amoebophila UWE25 2780372 YP_007908.1 CDS pc0909 NC_005861.1 1101584 1102312 R hypothetical protein complement(1101584..1102312) Candidatus Protochlamydia amoebophila UWE25 2780050 YP_007909.1 CDS pc0910 NC_005861.1 1102710 1102901 D hypothetical protein 1102710..1102901 Candidatus Protochlamydia amoebophila UWE25 2780051 YP_007910.1 CDS pc0911 NC_005861.1 1103053 1105284 D hypothetical protein 1103053..1105284 Candidatus Protochlamydia amoebophila UWE25 2780436 YP_007911.1 CDS pc0912 NC_005861.1 1105490 1106047 R hypothetical protein complement(1105490..1106047) Candidatus Protochlamydia amoebophila UWE25 2780437 YP_007912.1 CDS pc0913 NC_005861.1 1106016 1106609 R hypothetical protein complement(1106016..1106609) Candidatus Protochlamydia amoebophila UWE25 2780438 YP_007913.1 CDS czcD NC_005861.1 1106613 1107554 R similar to cation efflux system protein; cation efflux system protein complement(1106613..1107554) Candidatus Protochlamydia amoebophila UWE25 2780874 YP_007914.1 CDS kefC NC_005861.1 1107563 1109578 R similar to glutathione-regulated potassium-efflux system protein; glutathione-regulated potassium-efflux system protein complement(1107563..1109578) Candidatus Protochlamydia amoebophila UWE25 2780435 YP_007915.1 CDS pc0916 NC_005861.1 1109769 1111481 R similar to CPAF (chlamydia protease-like activity factor); protease-like activity factor) complement(1109769..1111481) Candidatus Protochlamydia amoebophila UWE25 2780588 YP_007916.1 CDS pc0917 NC_005861.1 1111728 1111919 R hypothetical protein complement(1111728..1111919) Candidatus Protochlamydia amoebophila UWE25 2780589 YP_007917.1 CDS pc0918 NC_005861.1 1112066 1113019 R hypothetical protein complement(1112066..1113019) Candidatus Protochlamydia amoebophila UWE25 2780590 YP_007918.1 CDS pc0919 NC_005861.1 1113295 1114119 R hypothetical protein complement(1113295..1114119) Candidatus Protochlamydia amoebophila UWE25 2781364 YP_007919.1 CDS pc0920 NC_005861.1 1114190 1114501 D hypothetical protein 1114190..1114501 Candidatus Protochlamydia amoebophila UWE25 2779950 YP_007920.1 CDS pc0921 NC_005861.1 1114636 1115076 D hypothetical protein 1114636..1115076 Candidatus Protochlamydia amoebophila UWE25 2779951 YP_007921.1 CDS pc0922 NC_005861.1 1115098 1116606 D hypothetical protein 1115098..1116606 Candidatus Protochlamydia amoebophila UWE25 2779952 YP_007922.1 CDS pc0923 NC_005861.1 1116610 1117467 D hypothetical protein 1116610..1117467 Candidatus Protochlamydia amoebophila UWE25 2781397 YP_007923.1 CDS pc0924 NC_005861.1 1117542 1118012 R hypothetical protein complement(1117542..1118012) Candidatus Protochlamydia amoebophila UWE25 2781398 YP_007924.1 CDS pc0925 NC_005861.1 1118047 1118481 R hypothetical protein complement(1118047..1118481) Candidatus Protochlamydia amoebophila UWE25 2780003 YP_007925.1 CDS pc0926 NC_005861.1 1118484 1119158 R hypothetical protein complement(1118484..1119158) Candidatus Protochlamydia amoebophila UWE25 2780004 YP_007926.1 CDS pc0927 NC_005861.1 1119383 1120690 R similar to cationic amino acid transport protein; cationic amino acid transport protein complement(1119383..1120690) Candidatus Protochlamydia amoebophila UWE25 2780005 YP_007927.1 CDS trpD NC_005861.1 1120701 1121504 R similar to anthranilate synthase component II; anthranilate synthase component II complement(1120701..1121504) Candidatus Protochlamydia amoebophila UWE25 2780472 YP_007928.1 CDS pc0929 NC_005861.1 1121797 1122255 D hypothetical protein 1121797..1122255 Candidatus Protochlamydia amoebophila UWE25 2779640 YP_007929.1 CDS cynT NC_005861.1 1122278 1122928 R similar to carbonic anhydrase; carbonic anhydrase complement(1122278..1122928) Candidatus Protochlamydia amoebophila UWE25 2779524 YP_007930.1 CDS pc0931 NC_005861.1 1123011 1124024 R hypothetical protein complement(1123011..1124024) Candidatus Protochlamydia amoebophila UWE25 2779641 YP_007931.1 CDS pc0932 NC_005861.1 1124206 1124412 R hypothetical protein complement(1124206..1124412) Candidatus Protochlamydia amoebophila UWE25 2779838 YP_007932.1 CDS dhnA NC_005861.1 1124555 1125610 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase complement(1124555..1125610) Candidatus Protochlamydia amoebophila UWE25 2780937 YP_007933.1 CDS pc0934 NC_005861.1 1125616 1126245 R hypothetical protein complement(1125616..1126245) Candidatus Protochlamydia amoebophila UWE25 2779839 YP_007934.1 CDS glk NC_005861.1 1126238 1127221 R similar to glucokinase; glucokinase complement(1126238..1127221) Candidatus Protochlamydia amoebophila UWE25 2781229 YP_007935.1 CDS pc0936 NC_005861.1 1127528 1127818 R hypothetical protein complement(1127528..1127818) Candidatus Protochlamydia amoebophila UWE25 2779840 YP_007936.1 CDS pc0937 NC_005861.1 1127815 1128186 R hypothetical protein complement(1127815..1128186) Candidatus Protochlamydia amoebophila UWE25 2780158 YP_007937.1 CDS pc0938 NC_005861.1 1128199 1137744 R hypothetical protein complement(1128199..1137744) Candidatus Protochlamydia amoebophila UWE25 2780159 YP_007938.1 CDS pc0939 NC_005861.1 1138049 1138594 D hypothetical protein 1138049..1138594 Candidatus Protochlamydia amoebophila UWE25 2781171 YP_007939.1 CDS pc0940 NC_005861.1 1138616 1138798 R hypothetical protein complement(1138616..1138798) Candidatus Protochlamydia amoebophila UWE25 2781172 YP_007940.1 CDS pc0941 NC_005861.1 1138959 1139177 D hypothetical protein 1138959..1139177 Candidatus Protochlamydia amoebophila UWE25 2780680 YP_007941.1 CDS pc0942 NC_005861.1 1139401 1140807 R hypothetical protein complement(1139401..1140807) Candidatus Protochlamydia amoebophila UWE25 2780681 YP_007942.1 CDS blc NC_005861.1 1140999 1141577 D similar to outer membrane lipoprotein; outer membrane lipoprotein 1140999..1141577 Candidatus Protochlamydia amoebophila UWE25 2781335 YP_007943.1 CDS pc0944 NC_005861.1 1141602 1142324 R hypothetical protein complement(1141602..1142324) Candidatus Protochlamydia amoebophila UWE25 2780682 YP_007944.1 CDS pc0945 NC_005861.1 1142358 1143143 R hypothetical protein complement(1142358..1143143) Candidatus Protochlamydia amoebophila UWE25 2780771 YP_007945.1 CDS pc0946 NC_005861.1 1143489 1144022 R hypothetical protein complement(1143489..1144022) Candidatus Protochlamydia amoebophila UWE25 2780772 YP_007946.1 CDS trxA NC_005861.1 1144309 1144743 R similar to thioredoxin; thioredoxin complement(1144309..1144743) Candidatus Protochlamydia amoebophila UWE25 2781310 YP_007947.1 CDS pc0948 NC_005861.1 1144892 1145539 R hypothetical protein complement(1144892..1145539) Candidatus Protochlamydia amoebophila UWE25 2780189 YP_007948.1 CDS pc0949 NC_005861.1 1145530 1147944 R hypothetical protein complement(1145530..1147944) Candidatus Protochlamydia amoebophila UWE25 2780190 YP_007949.1 CDS lig NC_005861.1 1147931 1149523 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1147931..1149523) Candidatus Protochlamydia amoebophila UWE25 2780835 YP_007950.1 CDS pc0951 NC_005861.1 1149520 1150524 R hypothetical protein complement(1149520..1150524) Candidatus Protochlamydia amoebophila UWE25 2780191 YP_007951.1 CDS pc0952 NC_005861.1 1150550 1151416 R strongly similar to oxidoreductases; oxidoreductase complement(1150550..1151416) Candidatus Protochlamydia amoebophila UWE25 2780619 YP_007952.1 CDS yciF NC_005861.1 1151528 1152052 R strongly similar to yciF protein; hypothetical protein complement(1151528..1152052) Candidatus Protochlamydia amoebophila UWE25 2781038 YP_007953.1 CDS pc0954 NC_005861.1 1152243 1152599 R hypothetical protein complement(1152243..1152599) Candidatus Protochlamydia amoebophila UWE25 2780620 YP_007954.1 CDS ftn NC_005861.1 1153192 1153680 D strongly similar to ferritin; ferritin 1153192..1153680 Candidatus Protochlamydia amoebophila UWE25 2779490 YP_007955.1 CDS pc0956 NC_005861.1 1153758 1154375 D hypothetical protein 1153758..1154375 Candidatus Protochlamydia amoebophila UWE25 2781032 YP_007956.1 CDS pc0957 NC_005861.1 1154509 1155510 R hypothetical protein complement(1154509..1155510) Candidatus Protochlamydia amoebophila UWE25 2781033 YP_007957.1 CDS dcd NC_005861.1 1155529 1156095 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(1155529..1156095) Candidatus Protochlamydia amoebophila UWE25 2779737 YP_007958.1 CDS pc0959 NC_005861.1 1156232 1156507 D hypothetical protein 1156232..1156507 Candidatus Protochlamydia amoebophila UWE25 2781034 YP_007959.1 CDS pc0960 NC_005861.1 1156504 1157508 R hypothetical protein complement(1156504..1157508) Candidatus Protochlamydia amoebophila UWE25 2779698 YP_007960.1 CDS pc0961 NC_005861.1 1158123 1158317 D hypothetical protein 1158123..1158317 Candidatus Protochlamydia amoebophila UWE25 2779699 YP_007961.1 CDS pc0962 NC_005861.1 1158463 1158663 D hypothetical protein 1158463..1158663 Candidatus Protochlamydia amoebophila UWE25 2781047 YP_007962.1 CDS pc0963 NC_005861.1 1158905 1159192 R hypothetical protein complement(1158905..1159192) Candidatus Protochlamydia amoebophila UWE25 2781048 YP_007963.1 CDS msrA NC_005861.1 1159552 1160406 R this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein complement(1159552..1160406) Candidatus Protochlamydia amoebophila UWE25 2781161 YP_007964.1 CDS pc0965 NC_005861.1 1160780 1161070 D hypothetical protein 1160780..1161070 Candidatus Protochlamydia amoebophila UWE25 2781049 YP_007965.1 CDS pc0966 NC_005861.1 1161496 1161750 R hypothetical protein complement(1161496..1161750) Candidatus Protochlamydia amoebophila UWE25 2780228 YP_007966.1 CDS pc0967 NC_005861.1 1162594 1162959 R hypothetical protein complement(1162594..1162959) Candidatus Protochlamydia amoebophila UWE25 2780229 YP_007967.1 CDS pc0968 NC_005861.1 1162956 1163726 R hypothetical protein complement(1162956..1163726) Candidatus Protochlamydia amoebophila UWE25 2780230 YP_007968.1 CDS pc0969 NC_005861.1 1164315 1164512 R hypothetical protein complement(1164315..1164512) Candidatus Protochlamydia amoebophila UWE25 2781389 YP_007969.1 CDS pc0970 NC_005861.1 1164574 1169391 R hypothetical protein complement(1164574..1169391) Candidatus Protochlamydia amoebophila UWE25 2781390 YP_007970.1 CDS pc0971 NC_005861.1 1170209 1170418 D hypothetical protein 1170209..1170418 Candidatus Protochlamydia amoebophila UWE25 2780356 YP_007971.1 CDS pc0972 NC_005861.1 1170480 1170701 R hypothetical protein complement(1170480..1170701) Candidatus Protochlamydia amoebophila UWE25 2780357 YP_007972.1 CDS pc0973 NC_005861.1 1170728 1171324 R hypothetical protein complement(1170728..1171324) Candidatus Protochlamydia amoebophila UWE25 2780358 YP_007973.1 CDS pc0974 NC_005861.1 1171399 1173663 R hypothetical protein complement(1171399..1173663) Candidatus Protochlamydia amoebophila UWE25 2780712 YP_007974.1 CDS umuC NC_005861.1 1173751 1174932 R similar to SOS mutagenesis and repair protein UmuC; SOS mutagenesis and repair protein UmuC complement(1173751..1174932) Candidatus Protochlamydia amoebophila UWE25 2781454 YP_007975.1 CDS umuD NC_005861.1 1175042 1175473 R strongly similar to SOS mutagenesis and repair protein UmuD; SOS mutagenesis and repair protein UmuD complement(1175042..1175473) Candidatus Protochlamydia amoebophila UWE25 2781455 YP_007976.1 CDS pc0977 NC_005861.1 1175632 1176183 R hypothetical protein complement(1175632..1176183) Candidatus Protochlamydia amoebophila UWE25 2780713 YP_007977.1 CDS pc0978 NC_005861.1 1176289 1176732 R hypothetical protein complement(1176289..1176732) Candidatus Protochlamydia amoebophila UWE25 2780714 YP_007978.1 CDS pc0979 NC_005861.1 1177103 1177543 R hypothetical protein complement(1177103..1177543) Candidatus Protochlamydia amoebophila UWE25 2780639 YP_007979.1 CDS pc0980 NC_005861.1 1177719 1178057 D hypothetical protein 1177719..1178057 Candidatus Protochlamydia amoebophila UWE25 2780640 YP_007980.1 CDS pc0981 NC_005861.1 1178115 1179518 R hypothetical protein complement(1178115..1179518) Candidatus Protochlamydia amoebophila UWE25 2779400 YP_007981.1 CDS pc0982 NC_005861.1 1180040 1180321 D hypothetical protein 1180040..1180321 Candidatus Protochlamydia amoebophila UWE25 2779401 YP_007982.1 CDS pc0983 NC_005861.1 1180462 1180704 D hypothetical protein 1180462..1180704 Candidatus Protochlamydia amoebophila UWE25 2779402 YP_007983.1 CDS pc0984 NC_005861.1 1180889 1181266 R hypothetical protein complement(1180889..1181266) Candidatus Protochlamydia amoebophila UWE25 2780068 YP_007984.1 CDS pc0985 NC_005861.1 1181470 1181733 D hypothetical protein 1181470..1181733 Candidatus Protochlamydia amoebophila UWE25 2780069 YP_007985.1 CDS pc0986 NC_005861.1 1181699 1181959 D hypothetical protein 1181699..1181959 Candidatus Protochlamydia amoebophila UWE25 2780070 YP_007986.1 CDS pc0987 NC_005861.1 1182166 1182501 D hypothetical protein 1182166..1182501 Candidatus Protochlamydia amoebophila UWE25 2779684 YP_007987.1 CDS pc0988 NC_005861.1 1182522 1182797 D hypothetical protein 1182522..1182797 Candidatus Protochlamydia amoebophila UWE25 2779685 YP_007988.1 CDS pc0989 NC_005861.1 1183287 1183535 D hypothetical protein 1183287..1183535 Candidatus Protochlamydia amoebophila UWE25 2780556 YP_007989.1 CDS pc0990 NC_005861.1 1183535 1183792 D hypothetical protein 1183535..1183792 Candidatus Protochlamydia amoebophila UWE25 2780557 YP_007990.1 CDS pc0991 NC_005861.1 1184113 1184298 D hypothetical protein 1184113..1184298 Candidatus Protochlamydia amoebophila UWE25 2780558 YP_007991.1 CDS pc0992 NC_005861.1 1184678 1186429 D hypothetical protein 1184678..1186429 Candidatus Protochlamydia amoebophila UWE25 2779983 YP_007992.1 CDS pc0993 NC_005861.1 1186926 1188362 D hypothetical protein 1186926..1188362 Candidatus Protochlamydia amoebophila UWE25 2779984 YP_007993.1 CDS pc0994 NC_005861.1 1188880 1189185 R hypothetical protein complement(1188880..1189185) Candidatus Protochlamydia amoebophila UWE25 2779985 YP_007994.1 CDS pc0995 NC_005861.1 1189309 1189611 R hypothetical protein complement(1189309..1189611) Candidatus Protochlamydia amoebophila UWE25 2780982 YP_007995.1 CDS pc0996 NC_005861.1 1189601 1189942 R hypothetical protein complement(1189601..1189942) Candidatus Protochlamydia amoebophila UWE25 2780983 YP_007996.1 CDS pc0997 NC_005861.1 1190143 1190340 R hypothetical protein complement(1190143..1190340) Candidatus Protochlamydia amoebophila UWE25 2780291 YP_007997.1 CDS pc0998 NC_005861.1 1190729 1190947 D hypothetical protein 1190729..1190947 Candidatus Protochlamydia amoebophila UWE25 2780292 YP_007998.1 CDS pc0999 NC_005861.1 1191029 1191298 R hypothetical protein complement(1191029..1191298) Candidatus Protochlamydia amoebophila UWE25 2780293 YP_007999.1 CDS pc1000 NC_005861.1 1191462 1192274 R hypothetical protein complement(1191462..1192274) Candidatus Protochlamydia amoebophila UWE25 2780979 YP_008000.1 CDS pc1001 NC_005861.1 1192289 1192666 R hypothetical protein complement(1192289..1192666) Candidatus Protochlamydia amoebophila UWE25 2780980 YP_008001.1 CDS pc1002 NC_005861.1 1193254 1193970 D hypothetical protein 1193254..1193970 Candidatus Protochlamydia amoebophila UWE25 2780981 YP_008002.1 CDS pc1003 NC_005861.1 1194716 1195081 D hypothetical protein 1194716..1195081 Candidatus Protochlamydia amoebophila UWE25 2780257 YP_008003.1 CDS pc1004 NC_005861.1 1195109 1195372 D hypothetical protein 1195109..1195372 Candidatus Protochlamydia amoebophila UWE25 2780258 YP_008004.1 CDS pc1005 NC_005861.1 1195366 1196211 D hypothetical protein 1195366..1196211 Candidatus Protochlamydia amoebophila UWE25 2780192 YP_008005.1 CDS pc1006 NC_005861.1 1196377 1199250 R hypothetical protein complement(1196377..1199250) Candidatus Protochlamydia amoebophila UWE25 2780193 YP_008006.1 CDS pc1007 NC_005861.1 1199428 1199691 R hypothetical protein complement(1199428..1199691) Candidatus Protochlamydia amoebophila UWE25 2780194 YP_008007.1 CDS pc1008 NC_005861.1 1200518 1200703 R hypothetical protein complement(1200518..1200703) Candidatus Protochlamydia amoebophila UWE25 2780409 YP_008008.1 CDS pc1009 NC_005861.1 1200784 1203594 R hypothetical protein complement(1200784..1203594) Candidatus Protochlamydia amoebophila UWE25 2780410 YP_008009.1 CDS pc1010 NC_005861.1 1204009 1205259 R hypothetical protein complement(1204009..1205259) Candidatus Protochlamydia amoebophila UWE25 2780411 YP_008010.1 CDS pc1011 NC_005861.1 1205240 1207180 R hypothetical protein complement(1205240..1207180) Candidatus Protochlamydia amoebophila UWE25 2779754 YP_008011.1 CDS pc1012 NC_005861.1 1207470 1207697 R hypothetical protein complement(1207470..1207697) Candidatus Protochlamydia amoebophila UWE25 2779755 YP_008012.1 CDS pc1013 NC_005861.1 1207801 1208076 D hypothetical protein 1207801..1208076 Candidatus Protochlamydia amoebophila UWE25 2779869 YP_008013.1 CDS pc1014 NC_005861.1 1208060 1208398 D hypothetical protein 1208060..1208398 Candidatus Protochlamydia amoebophila UWE25 2779870 YP_008014.1 CDS pc1015 NC_005861.1 1208446 1208811 D hypothetical protein 1208446..1208811 Candidatus Protochlamydia amoebophila UWE25 2779871 YP_008015.1 CDS pc1016 NC_005861.1 1208815 1209030 D hypothetical protein 1208815..1209030 Candidatus Protochlamydia amoebophila UWE25 2780201 YP_008016.1 CDS pc1017 NC_005861.1 1209144 1209353 D hypothetical protein 1209144..1209353 Candidatus Protochlamydia amoebophila UWE25 2780202 YP_008017.1 CDS pc1018 NC_005861.1 1209346 1209702 D hypothetical protein 1209346..1209702 Candidatus Protochlamydia amoebophila UWE25 2780203 YP_008018.1 CDS pc1019 NC_005861.1 1209940 1210209 D hypothetical protein 1209940..1210209 Candidatus Protochlamydia amoebophila UWE25 2780949 YP_008019.1 CDS pc1020 NC_005861.1 1210328 1210609 D hypothetical protein 1210328..1210609 Candidatus Protochlamydia amoebophila UWE25 2780950 YP_008020.1 CDS doc NC_005861.1 1210578 1210955 R similar to death on curing protein; death on curing protein complement(1210578..1210955) Candidatus Protochlamydia amoebophila UWE25 2781118 YP_008021.1 CDS pc1022 NC_005861.1 1210952 1211182 R hypothetical protein complement(1210952..1211182) Candidatus Protochlamydia amoebophila UWE25 2780263 YP_008022.1 CDS pc1023 NC_005861.1 1211539 1211724 R hypothetical protein complement(1211539..1211724) Candidatus Protochlamydia amoebophila UWE25 2780264 YP_008023.1 CDS pc1024 NC_005861.1 1211805 1211990 D hypothetical protein 1211805..1211990 Candidatus Protochlamydia amoebophila UWE25 2780265 YP_008024.1 CDS pc1025 NC_005861.1 1212370 1214457 D hypothetical protein 1212370..1214457 Candidatus Protochlamydia amoebophila UWE25 2780047 YP_008025.1 CDS pc1026 NC_005861.1 1214535 1214783 R hypothetical protein complement(1214535..1214783) Candidatus Protochlamydia amoebophila UWE25 2780048 YP_008026.1 CDS pc1027 NC_005861.1 1214905 1215108 D hypothetical protein 1214905..1215108 Candidatus Protochlamydia amoebophila UWE25 2780049 YP_008027.1 CDS pc1028 NC_005861.1 1215757 1216134 D hypothetical protein 1215757..1216134 Candidatus Protochlamydia amoebophila UWE25 2780285 YP_008028.1 CDS pc1029 NC_005861.1 1216149 1216961 D hypothetical protein 1216149..1216961 Candidatus Protochlamydia amoebophila UWE25 2780286 YP_008029.1 CDS pc1030 NC_005861.1 1217058 1217267 R hypothetical protein complement(1217058..1217267) Candidatus Protochlamydia amoebophila UWE25 2781051 YP_008030.1 CDS pc1031 NC_005861.1 1217895 1219556 R hypothetical protein complement(1217895..1219556) Candidatus Protochlamydia amoebophila UWE25 2781052 YP_008031.1 CDS pc1032 NC_005861.1 1220127 1222331 R hypothetical protein complement(1220127..1222331) Candidatus Protochlamydia amoebophila UWE25 2781053 YP_008032.1 CDS pc1033 NC_005861.1 1222606 1224594 R hypothetical protein complement(1222606..1224594) Candidatus Protochlamydia amoebophila UWE25 2779444 YP_008033.1 CDS pc1034 NC_005861.1 1225106 1225537 R hypothetical protein complement(1225106..1225537) Candidatus Protochlamydia amoebophila UWE25 2779445 YP_008034.1 CDS soj NC_005861.1 1225537 1226133 R similar to sporulation initiation inhibitor protein; sporulation initiation inhibitor protein complement(1225537..1226133) Candidatus Protochlamydia amoebophila UWE25 2780107 YP_008035.1 CDS pc1036 NC_005861.1 1226446 1226646 D hypothetical protein 1226446..1226646 Candidatus Protochlamydia amoebophila UWE25 2779446 YP_008036.1 CDS pc1037 NC_005861.1 1226703 1226987 R hypothetical protein complement(1226703..1226987) Candidatus Protochlamydia amoebophila UWE25 2780117 YP_008037.1 CDS pc1038 NC_005861.1 1233025 1235622 R hypothetical protein complement(1233025..1235622) Candidatus Protochlamydia amoebophila UWE25 2780118 YP_008038.1 CDS pc1039 NC_005861.1 1235690 1238296 R hypothetical protein complement(1235690..1238296) Candidatus Protochlamydia amoebophila UWE25 2779744 YP_008039.1 CDS pc1040 NC_005861.1 1238914 1239144 D hypothetical protein 1238914..1239144 Candidatus Protochlamydia amoebophila UWE25 2779745 YP_008040.1 CDS adk NC_005861.1 1239407 1240102 R strongly similar to adenylate kinase (EC 2.7.4.3); adenylate kinase complement(1239407..1240102) Candidatus Protochlamydia amoebophila UWE25 2780454 YP_008041.1 CDS ribD NC_005861.1 1240454 1241560 D strongly similar to diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1240454..1241560 Candidatus Protochlamydia amoebophila UWE25 2780043 YP_008042.1 CDS pc1043 NC_005861.1 1241557 1242729 R hypothetical protein complement(1241557..1242729) Candidatus Protochlamydia amoebophila UWE25 2779746 YP_008043.1 CDS pc1044 NC_005861.1 1242751 1243191 R hypothetical protein complement(1242751..1243191) Candidatus Protochlamydia amoebophila UWE25 2779386 YP_008044.1 CDS pc1045 NC_005861.1 1243160 1243600 R hypothetical protein complement(1243160..1243600) Candidatus Protochlamydia amoebophila UWE25 2779387 YP_008045.1 CDS pc1046 NC_005861.1 1243913 1244683 D hypothetical protein 1243913..1244683 Candidatus Protochlamydia amoebophila UWE25 2779388 YP_008046.1 CDS leuS NC_005861.1 1244786 1247323 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1244786..1247323) Candidatus Protochlamydia amoebophila UWE25 2780786 YP_008047.1 CDS vacB NC_005861.1 1247563 1249890 D similar to ribonuclease R; ribonuclease R 1247563..1249890 Candidatus Protochlamydia amoebophila UWE25 2781146 YP_008048.1 CDS pc1049 NC_005861.1 1250012 1250719 D hypothetical protein 1250012..1250719 Candidatus Protochlamydia amoebophila UWE25 2780115 YP_008049.1 CDS pc1050 NC_005861.1 1250725 1251381 D hypothetical protein 1250725..1251381 Candidatus Protochlamydia amoebophila UWE25 2780116 YP_008050.1 CDS pc1051 NC_005861.1 1251338 1251790 D hypothetical protein 1251338..1251790 Candidatus Protochlamydia amoebophila UWE25 2779962 YP_008051.1 CDS pc1052 NC_005861.1 1251800 1253305 R hypothetical protein complement(1251800..1253305) Candidatus Protochlamydia amoebophila UWE25 2779963 YP_008052.1 CDS pc1053 NC_005861.1 1253754 1253912 D hypothetical protein 1253754..1253912 Candidatus Protochlamydia amoebophila UWE25 2779964 YP_008053.1 CDS pc1054 NC_005861.1 1254144 1254596 D hypothetical protein 1254144..1254596 Candidatus Protochlamydia amoebophila UWE25 2779977 YP_008054.1 CDS pc1055 NC_005861.1 1254970 1256343 D hypothetical protein 1254970..1256343 Candidatus Protochlamydia amoebophila UWE25 2779978 YP_008055.1 CDS pc1056 NC_005861.1 1256880 1258439 D hypothetical protein 1256880..1258439 Candidatus Protochlamydia amoebophila UWE25 2779979 YP_008056.1 CDS pc1057 NC_005861.1 1258575 1260572 D hypothetical protein 1258575..1260572 Candidatus Protochlamydia amoebophila UWE25 2779688 YP_008057.1 CDS cynT NC_005861.1 1260664 1261449 R similar to carbonate dehydratase, cynT; carbonate dehydratase, cynT complement(1260664..1261449) Candidatus Protochlamydia amoebophila UWE25 2781121 YP_008058.1 CDS pc1059 NC_005861.1 1261811 1262080 D hypothetical protein 1261811..1262080 Candidatus Protochlamydia amoebophila UWE25 2779689 YP_008059.1 CDS ubiE NC_005861.1 1262125 1262853 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1262125..1262853 Candidatus Protochlamydia amoebophila UWE25 2779722 YP_008060.1 CDS pc1061 NC_005861.1 1262887 1263300 D hypothetical protein 1262887..1263300 Candidatus Protochlamydia amoebophila UWE25 2781365 YP_008061.1 CDS menE NC_005861.1 1263309 1264442 R similar to o-succinylbenzoate-CoA ligase, menE; o-succinylbenzoate-CoA ligase, menE complement(1263309..1264442) Candidatus Protochlamydia amoebophila UWE25 2781148 YP_008062.1 CDS menA NC_005861.1 1264461 1265363 R similar to 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA complement(1264461..1265363) Candidatus Protochlamydia amoebophila UWE25 2780904 YP_008063.1 CDS menB NC_005861.1 1265384 1266211 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(1265384..1266211) Candidatus Protochlamydia amoebophila UWE25 2780905 YP_008064.1 CDS pc1065 NC_005861.1 1267648 1272165 D hypothetical protein 1267648..1272165 Candidatus Protochlamydia amoebophila UWE25 2781366 YP_008065.1 CDS pc1066 NC_005861.1 1272880 1273185 D hypothetical protein 1272880..1273185 Candidatus Protochlamydia amoebophila UWE25 2781367 YP_008066.1 CDS pc1067 NC_005861.1 1273420 1274130 R hypothetical protein complement(1273420..1274130) Candidatus Protochlamydia amoebophila UWE25 2781003 YP_008067.1 CDS menD NC_005861.1 1274130 1275692 R similar to menaquinone biosynthesis protein, menD; menaquinone biosynthesis protein, menD complement(1274130..1275692) Candidatus Protochlamydia amoebophila UWE25 2780907 YP_008068.1 CDS menF NC_005861.1 1275689 1276744 R similar to menaquinone-specific isochorismate synthase, menF; menaquinone-specific isochorismate synthase, menF complement(1275689..1276744) Candidatus Protochlamydia amoebophila UWE25 2781149 YP_008069.1 CDS pc1070 NC_005861.1 1276945 1278039 R hypothetical protein complement(1276945..1278039) Candidatus Protochlamydia amoebophila UWE25 2781004 YP_008070.1 CDS pc1071 NC_005861.1 1278131 1279558 R hypothetical protein complement(1278131..1279558) Candidatus Protochlamydia amoebophila UWE25 2780967 YP_008071.1 CDS holB NC_005861.1 1280171 1281280 R similar to DNA polymerase III, delta' subunit, holB; DNA polymerase III, delta' subunit, holB complement(1280171..1281280) Candidatus Protochlamydia amoebophila UWE25 2780650 YP_008072.1 CDS tmk NC_005861.1 1281277 1281954 R similar to thymidylate kinase, tmk; thymidylate kinase, tmk complement(1281277..1281954) Candidatus Protochlamydia amoebophila UWE25 2780386 YP_008073.1 CDS gyrA NC_005861.1 1281957 1284527 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1281957..1284527) Candidatus Protochlamydia amoebophila UWE25 2780174 YP_008074.1 CDS gyrB NC_005861.1 1284615 1287122 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(1284615..1287122) Candidatus Protochlamydia amoebophila UWE25 2780806 YP_008075.1 CDS pc1076 NC_005861.1 1287158 1287496 R hypothetical protein complement(1287158..1287496) Candidatus Protochlamydia amoebophila UWE25 2780968 YP_008076.1 CDS pc1077 NC_005861.1 1287830 1288867 R hypothetical protein complement(1287830..1288867) Candidatus Protochlamydia amoebophila UWE25 2780969 YP_008077.1 CDS ispH NC_005861.1 1288939 1289880 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(1288939..1289880) Candidatus Protochlamydia amoebophila UWE25 2780649 YP_008078.1 CDS wzb NC_005861.1 1289951 1290433 R similar to low molecular weight protein-tyrosine-phosphatase; low molecular weight protein-tyrosine-phosphatase complement(1289951..1290433) Candidatus Protochlamydia amoebophila UWE25 2780126 YP_008079.1 CDS pc1080 NC_005861.1 1290509 1292476 R hypothetical protein complement(1290509..1292476) Candidatus Protochlamydia amoebophila UWE25 2781063 YP_008080.1 CDS yidC NC_005861.1 1292774 1295374 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1292774..1295374 Candidatus Protochlamydia amoebophila UWE25 2779578 YP_008081.1 CDS dnaA NC_005861.1 1295440 1296795 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1295440..1296795 Candidatus Protochlamydia amoebophila UWE25 2780108 YP_008082.1 CDS lgt NC_005861.1 1297070 1298194 D similar to prolipoprotein diacylglycerol transferase; prolipoprotein diacylglycerol transferase 1297070..1298194 Candidatus Protochlamydia amoebophila UWE25 2780834 YP_008083.1 CDS fdiV NC_005861.1 1298326 1298592 D similar to ferredoxin [2Fe-2S] 4; ferredoxin [2Fe-2S] 4 1298326..1298592 Candidatus Protochlamydia amoebophila UWE25 2780797 YP_008084.1 CDS pc1085 NC_005861.1 1298729 1299433 D hypothetical protein 1298729..1299433 Candidatus Protochlamydia amoebophila UWE25 2781064 YP_008085.1 CDS pc1086 NC_005861.1 1299939 1301036 D hypothetical protein 1299939..1301036 Candidatus Protochlamydia amoebophila UWE25 2781065 YP_008086.1 CDS pc1087 NC_005861.1 1301057 1302202 D hypothetical protein 1301057..1302202 Candidatus Protochlamydia amoebophila UWE25 2781193 YP_008087.1 CDS dld1 NC_005861.1 1302350 1303747 R strongly similar to dihydrolipoamide dehydrogenase precursor (E3 component of pyruvate dehydrogenase multi-enzyme complex); dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase multi-enzyme complex) complement(1302350..1303747) Candidatus Protochlamydia amoebophila UWE25 2780074 YP_008088.1 CDS sucB NC_005861.1 1303768 1304982 R strongly similar to dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB; dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB complement(1303768..1304982) Candidatus Protochlamydia amoebophila UWE25 2780241 YP_008089.1 CDS sucA NC_005861.1 1304928 1307600 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(1304928..1307600) Candidatus Protochlamydia amoebophila UWE25 2780240 YP_008090.1 CDS pc1091 NC_005861.1 1307741 1308403 D hypothetical protein 1307741..1308403 Candidatus Protochlamydia amoebophila UWE25 2781194 YP_008091.1 CDS pc1092 NC_005861.1 1308400 1310775 D hypothetical protein 1308400..1310775 Candidatus Protochlamydia amoebophila UWE25 2781195 YP_008092.1 CDS ysgA NC_005861.1 1310772 1311503 R similar to carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(1310772..1311503) Candidatus Protochlamydia amoebophila UWE25 2781321 YP_008093.1 CDS pc1094 NC_005861.1 1311764 1313668 D hypothetical protein 1311764..1313668 Candidatus Protochlamydia amoebophila UWE25 2780843 YP_008094.1 CDS pc1095 NC_005861.1 1313892 1314359 D hypothetical protein 1313892..1314359 Candidatus Protochlamydia amoebophila UWE25 2780844 YP_008095.1 CDS hemN NC_005861.1 1314343 1315500 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1314343..1315500 Candidatus Protochlamydia amoebophila UWE25 2781345 YP_008096.1 CDS pc1097 NC_005861.1 1315713 1317803 D hypothetical protein 1315713..1317803 Candidatus Protochlamydia amoebophila UWE25 2780845 YP_008097.1 CDS pc1098 NC_005861.1 1317821 1318207 D hypothetical protein 1317821..1318207 Candidatus Protochlamydia amoebophila UWE25 2780340 YP_008098.1 CDS pc1099 NC_005861.1 1318504 1319229 R hypothetical protein complement(1318504..1319229) Candidatus Protochlamydia amoebophila UWE25 2780341 YP_008099.1 CDS pc1100 NC_005861.1 1319229 1320260 R hypothetical protein complement(1319229..1320260) Candidatus Protochlamydia amoebophila UWE25 2780763 YP_008100.1 CDS pc1101 NC_005861.1 1320367 1320621 R hypothetical protein complement(1320367..1320621) Candidatus Protochlamydia amoebophila UWE25 2780764 YP_008101.1 CDS asd NC_005861.1 1320902 1321969 R catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase complement(1320902..1321969) Candidatus Protochlamydia amoebophila UWE25 2779770 YP_008102.1 CDS pepA NC_005861.1 1321975 1323474 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1321975..1323474) Candidatus Protochlamydia amoebophila UWE25 2780361 YP_008103.1 CDS ssb NC_005861.1 1323731 1324207 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1323731..1324207) Candidatus Protochlamydia amoebophila UWE25 2780133 YP_008104.1 CDS pc1105 NC_005861.1 1324524 1325027 R hypothetical protein complement(1324524..1325027) Candidatus Protochlamydia amoebophila UWE25 2780765 YP_008105.1 CDS pc1106 NC_005861.1 1325660 1327672 D strongly similar to isoamylase; isoamylase 1325660..1327672 Candidatus Protochlamydia amoebophila UWE25 2779603 YP_008106.1 CDS pc1107 NC_005861.1 1327793 1328656 R hypothetical protein complement(1327793..1328656) Candidatus Protochlamydia amoebophila UWE25 2779604 YP_008107.1 CDS ruvB NC_005861.1 1328687 1329685 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1328687..1329685) Candidatus Protochlamydia amoebophila UWE25 2779416 YP_008108.1 CDS pc1109 NC_005861.1 1330049 1330588 D hypothetical protein 1330049..1330588 Candidatus Protochlamydia amoebophila UWE25 2779605 YP_008109.1 CDS lcrH NC_005861.1 1330638 1331024 D similar to low calcium response protein lcrH; low calcium response protein lcrH 1330638..1331024 Candidatus Protochlamydia amoebophila UWE25 2781278 YP_008110.1 CDS pc1111 NC_005861.1 1331034 1331996 D hypothetical protein 1331034..1331996 Candidatus Protochlamydia amoebophila UWE25 2781088 YP_008111.1 CDS pc1112 NC_005861.1 1332028 1332606 D hypothetical protein 1332028..1332606 Candidatus Protochlamydia amoebophila UWE25 2781089 YP_008112.1 CDS pc1113 NC_005861.1 1332648 1333280 R hypothetical protein complement(1332648..1333280) Candidatus Protochlamydia amoebophila UWE25 2781090 YP_008113.1 CDS pc1114 NC_005861.1 1333489 1334451 D hypothetical protein 1333489..1334451 Candidatus Protochlamydia amoebophila UWE25 2779634 YP_008114.1 CDS mgtE NC_005861.1 1334543 1336015 R similar to Mg2+ transporter; Mg2+ transporter complement(1334543..1336015) Candidatus Protochlamydia amoebophila UWE25 2781013 YP_008115.1 CDS fusA NC_005861.1 1336275 1338095 D similar to Elongation factor G (EF-G), fusA; elongation factor G (EF-G), fusA 1336275..1338095 Candidatus Protochlamydia amoebophila UWE25 2780447 YP_008116.1 CDS pc1117 NC_005861.1 1338417 1340465 R hypothetical protein complement(1338417..1340465) Candidatus Protochlamydia amoebophila UWE25 2779635 YP_008117.1 CDS pc1118 NC_005861.1 1340628 1342784 R hypothetical protein complement(1340628..1342784) Candidatus Protochlamydia amoebophila UWE25 2779636 YP_008118.1 CDS pc1119 NC_005861.1 1343063 1344028 R hypothetical protein complement(1343063..1344028) Candidatus Protochlamydia amoebophila UWE25 2781095 YP_008119.1 CDS pc1120 NC_005861.1 1344242 1345501 D hypothetical protein 1344242..1345501 Candidatus Protochlamydia amoebophila UWE25 2781096 YP_008120.1 CDS yedO NC_005861.1 1345515 1346522 D similar to 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase); 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) 1345515..1346522 Candidatus Protochlamydia amoebophila UWE25 2781039 YP_008121.1 CDS pc1122 NC_005861.1 1346680 1346895 D hypothetical protein 1346680..1346895 Candidatus Protochlamydia amoebophila UWE25 2781097 YP_008122.1 CDS pc1123 NC_005861.1 1347076 1347984 R hypothetical protein complement(1347076..1347984) Candidatus Protochlamydia amoebophila UWE25 2781098 YP_008123.1 CDS pc1124 NC_005861.1 1348161 1349555 D similar to calcium-dependent protein kinase 9; calcium-dependent protein kinase 9 1348161..1349555 Candidatus Protochlamydia amoebophila UWE25 2781099 YP_008124.1 CDS hlyE NC_005861.1 1349586 1350170 R strongly similar to hemolysin III; hemolysin III complement(1349586..1350170) Candidatus Protochlamydia amoebophila UWE25 2780171 YP_008125.1 CDS pc1126 NC_005861.1 1350529 1350819 R hypothetical protein complement(1350529..1350819) Candidatus Protochlamydia amoebophila UWE25 2781079 YP_008126.1 CDS pc1127 NC_005861.1 1351276 1351482 R hypothetical protein complement(1351276..1351482) Candidatus Protochlamydia amoebophila UWE25 2781080 YP_008127.1 CDS pc1128 NC_005861.1 1351926 1354250 D hypothetical protein 1351926..1354250 Candidatus Protochlamydia amoebophila UWE25 2781081 YP_008128.1 CDS pc1129 NC_005861.1 1354285 1357605 R hypothetical protein complement(1354285..1357605) Candidatus Protochlamydia amoebophila UWE25 2779551 YP_008129.1 CDS pc1130 NC_005861.1 1358617 1358799 R hypothetical protein complement(1358617..1358799) Candidatus Protochlamydia amoebophila UWE25 2779552 YP_008130.1 CDS pc1131 NC_005861.1 1358842 1359810 D hypothetical protein 1358842..1359810 Candidatus Protochlamydia amoebophila UWE25 2779553 YP_008131.1 CDS proC NC_005861.1 1360259 1361053 D similar to pyrroline-5-carboxylate reductase, proC; pyrroline-5-carboxylate reductase 1360259..1361053 Candidatus Protochlamydia amoebophila UWE25 2779499 YP_008132.1 CDS ppiB NC_005861.1 1361163 1361642 D strongly similar to peptidylprolyl isomerase II (cyclophilin A); peptidylprolyl isomerase II 1361163..1361642 Candidatus Protochlamydia amoebophila UWE25 2779436 YP_008133.1 CDS pc1134 NC_005861.1 1362082 1362756 D hypothetical protein 1362082..1362756 Candidatus Protochlamydia amoebophila UWE25 2781183 YP_008134.1 CDS pc1135 NC_005861.1 1363980 1366235 D hypothetical protein 1363980..1366235 Candidatus Protochlamydia amoebophila UWE25 2781184 YP_008135.1 CDS pc1136 NC_005861.1 1366304 1367545 D hypothetical protein 1366304..1367545 Candidatus Protochlamydia amoebophila UWE25 2781185 YP_008136.1 CDS pc1137 NC_005861.1 1367579 1368811 D hypothetical protein 1367579..1368811 Candidatus Protochlamydia amoebophila UWE25 2779965 YP_008137.1 CDS pc1138 NC_005861.1 1369113 1370231 R hypothetical protein complement(1369113..1370231) Candidatus Protochlamydia amoebophila UWE25 2779966 YP_008138.1 CDS pc1139 NC_005861.1 1370472 1370657 D hypothetical protein 1370472..1370657 Candidatus Protochlamydia amoebophila UWE25 2779967 YP_008139.1 CDS pc1140 NC_005861.1 1370917 1371102 D hypothetical protein 1370917..1371102 Candidatus Protochlamydia amoebophila UWE25 2779756 YP_008140.1 CDS pc1141 NC_005861.1 1371075 1371659 D hypothetical protein 1371075..1371659 Candidatus Protochlamydia amoebophila UWE25 2779757 YP_008141.1 CDS pc1142 NC_005861.1 1372384 1374156 D hypothetical protein 1372384..1374156 Candidatus Protochlamydia amoebophila UWE25 2779758 YP_008142.1 CDS pc1143 NC_005861.1 1374334 1375344 R hypothetical protein complement(1374334..1375344) Candidatus Protochlamydia amoebophila UWE25 2780526 YP_008143.1 CDS pc1144 NC_005861.1 1375609 1375827 D hypothetical protein 1375609..1375827 Candidatus Protochlamydia amoebophila UWE25 2780527 YP_008144.1 CDS pc1145 NC_005861.1 1376309 1376572 D hypothetical protein 1376309..1376572 Candidatus Protochlamydia amoebophila UWE25 2780528 YP_008145.1 CDS pc1146 NC_005861.1 1376736 1377008 D hypothetical protein 1376736..1377008 Candidatus Protochlamydia amoebophila UWE25 2780579 YP_008146.1 CDS pc1147 NC_005861.1 1377330 1377872 D hypothetical protein 1377330..1377872 Candidatus Protochlamydia amoebophila UWE25 2780580 YP_008147.1 CDS pc1148 NC_005861.1 1377919 1378458 D hypothetical protein 1377919..1378458 Candidatus Protochlamydia amoebophila UWE25 2780581 YP_008148.1 CDS pc1149 NC_005861.1 1378476 1378940 D hypothetical protein 1378476..1378940 Candidatus Protochlamydia amoebophila UWE25 2780137 YP_008149.1 CDS pc1150 NC_005861.1 1378969 1379208 D hypothetical protein 1378969..1379208 Candidatus Protochlamydia amoebophila UWE25 2780138 YP_008150.1 CDS pc1151 NC_005861.1 1379613 1380548 R hypothetical protein complement(1379613..1380548) Candidatus Protochlamydia amoebophila UWE25 2779637 YP_008151.1 CDS fabI NC_005861.1 1381433 1382344 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1381433..1382344 Candidatus Protochlamydia amoebophila UWE25 2780877 YP_008152.1 CDS pc1153 NC_005861.1 1382535 1383407 R hypothetical protein complement(1382535..1383407) Candidatus Protochlamydia amoebophila UWE25 2779638 YP_008153.1 CDS pc1154 NC_005861.1 1383411 1384520 R hypothetical protein complement(1383411..1384520) Candidatus Protochlamydia amoebophila UWE25 2779639 YP_008154.1 CDS pc1155 NC_005861.1 1384641 1384916 R hypothetical protein complement(1384641..1384916) Candidatus Protochlamydia amoebophila UWE25 2779504 YP_008155.1 CDS fabG NC_005861.1 1384921 1385628 R similar to 3-ketoacyl-acyl carrier protein reductase, fabG; 3-ketoacyl-ACP reductase complement(1384921..1385628) Candidatus Protochlamydia amoebophila UWE25 2780155 YP_008156.1 CDS folB NC_005861.1 1385628 1386416 R similar to dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein); dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein) complement(1385628..1386416) Candidatus Protochlamydia amoebophila UWE25 2781340 YP_008157.1 CDS pc1158 NC_005861.1 1386409 1387287 R hypothetical protein complement(1386409..1387287) Candidatus Protochlamydia amoebophila UWE25 2779505 YP_008158.1 CDS pc1159 NC_005861.1 1387312 1387884 D hypothetical protein 1387312..1387884 Candidatus Protochlamydia amoebophila UWE25 2779506 YP_008159.1 CDS pc1160 NC_005861.1 1388187 1388666 D hypothetical protein 1388187..1388666 Candidatus Protochlamydia amoebophila UWE25 2779987 YP_008160.1 CDS dnaQ NC_005861.1 1388733 1389383 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1388733..1389383 Candidatus Protochlamydia amoebophila UWE25 2779831 YP_008161.1 CDS pc1162 NC_005861.1 1389380 1390189 D hypothetical protein 1389380..1390189 Candidatus Protochlamydia amoebophila UWE25 2779988 YP_008162.1 CDS msbA NC_005861.1 1390216 1392156 R similar to transport ATP binding protein; transport ATP binding protein complement(1390216..1392156) Candidatus Protochlamydia amoebophila UWE25 2780219 YP_008163.1 CDS accA NC_005861.1 1392164 1393114 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1392164..1393114) Candidatus Protochlamydia amoebophila UWE25 2779848 YP_008164.1 CDS pc1165 NC_005861.1 1393174 1394151 R hypothetical protein complement(1393174..1394151) Candidatus Protochlamydia amoebophila UWE25 2779989 YP_008165.1 CDS pc1166 NC_005861.1 1394316 1394612 D hypothetical protein 1394316..1394612 Candidatus Protochlamydia amoebophila UWE25 2781100 YP_008166.1 CDS pc1167 NC_005861.1 1394602 1396098 R hypothetical protein complement(1394602..1396098) Candidatus Protochlamydia amoebophila UWE25 2781101 YP_008167.1 CDS himD NC_005861.1 1396313 1396675 R similar to integration host factor; integration host factor complement(1396313..1396675) Candidatus Protochlamydia amoebophila UWE25 2780708 YP_008168.1 CDS tyrS NC_005861.1 1396901 1398178 R strongly similar to tyrosine-tRNA ligase; tyrosine-tRNA ligase complement(1396901..1398178) Candidatus Protochlamydia amoebophila UWE25 2779721 YP_008169.1 CDS pc1170 NC_005861.1 1398232 1398474 D hypothetical protein 1398232..1398474 Candidatus Protochlamydia amoebophila UWE25 2781102 YP_008170.1 CDS osmY NC_005861.1 1398711 1399103 D similar to hyperosmotically inducible periplasmic protein; hypothetical protein 1398711..1399103 Candidatus Protochlamydia amoebophila UWE25 2779621 YP_008171.1 CDS pc1172 NC_005861.1 1399361 1399987 D hypothetical protein 1399361..1399987 Candidatus Protochlamydia amoebophila UWE25 2780794 YP_008172.1 CDS pc1173 NC_005861.1 1400051 1400809 R hypothetical protein complement(1400051..1400809) Candidatus Protochlamydia amoebophila UWE25 2780795 YP_008173.1 CDS pc1174 NC_005861.1 1401119 1401973 D hypothetical protein 1401119..1401973 Candidatus Protochlamydia amoebophila UWE25 2780796 YP_008174.1 CDS rpiA NC_005861.1 1402002 1402700 D similar to ribose 5-phosphate isomerase A; ribose 5-phosphate isomerase A 1402002..1402700 Candidatus Protochlamydia amoebophila UWE25 2780519 YP_008175.1 CDS pc1176 NC_005861.1 1402818 1403231 D hypothetical protein 1402818..1403231 Candidatus Protochlamydia amoebophila UWE25 2780195 YP_008176.1 CDS ptsH NC_005861.1 1403285 1403578 R strongly similar to PTS phosphocarrier protein HPr; PTS phosphocarrier protein HPr complement(1403285..1403578) Candidatus Protochlamydia amoebophila UWE25 2779666 YP_008177.1 CDS pepF NC_005861.1 1403990 1405834 D similar to oligoendopeptidase F; oligoendopeptidase F 1403990..1405834 Candidatus Protochlamydia amoebophila UWE25 2779787 YP_008178.1 CDS groES NC_005861.1 1406041 1406361 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1406041..1406361 Candidatus Protochlamydia amoebophila UWE25 2779941 YP_008179.1 CDS groEL NC_005861.1 1406392 1408014 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1406392..1408014 Candidatus Protochlamydia amoebophila UWE25 2780167 YP_008180.1 CDS uvsE NC_005861.1 1408863 1409825 D UV damage endonuclease 1408863..1409825 Candidatus Protochlamydia amoebophila UWE25 2780196 YP_008181.1 CDS topI NC_005861.1 1410213 1411289 D similar to DNA topoisomerase I; DNA topoisomerase I 1410213..1411289 Candidatus Protochlamydia amoebophila UWE25 2780468 YP_008182.1 CDS wbdA NC_005861.1 1411656 1412741 R similar to mannosyltransferase; mannosyltransferase complement(1411656..1412741) Candidatus Protochlamydia amoebophila UWE25 2780789 YP_008183.1 CDS pc1184 NC_005861.1 1412895 1414538 R hypothetical protein complement(1412895..1414538) Candidatus Protochlamydia amoebophila UWE25 2780197 YP_008184.1 CDS pc1185 NC_005861.1 1415353 1415568 D hypothetical protein 1415353..1415568 Candidatus Protochlamydia amoebophila UWE25 2781431 YP_008185.1 CDS pc1186 NC_005861.1 1415704 1416126 D hypothetical protein 1415704..1416126 Candidatus Protochlamydia amoebophila UWE25 2781432 YP_008186.1 CDS pc1187 NC_005861.1 1416324 1416743 D hypothetical protein 1416324..1416743 Candidatus Protochlamydia amoebophila UWE25 2781433 YP_008187.1 CDS tspO NC_005861.1 1416865 1417329 R similar to outer membrane protein tspO; outer membrane protein tspO complement(1416865..1417329) Candidatus Protochlamydia amoebophila UWE25 2780752 YP_008188.1 CDS cyoA NC_005861.1 1417628 1418515 D strongly similar to cytochrome o ubiquinol oxidase chain II cyoA; cytochrome o ubiquinol oxidase chain II cyoA 1417628..1418515 Candidatus Protochlamydia amoebophila UWE25 2781122 YP_008189.1 CDS cyoB NC_005861.1 1418523 1420484 D strongly similar to cytochrome o ubiquinol oxidase chain I cyoB; cytochrome o ubiquinol oxidase chain I cyoB 1418523..1420484 Candidatus Protochlamydia amoebophila UWE25 2781123 YP_008190.1 CDS cyoC NC_005861.1 1420493 1421128 D strongly similar to cytochrome o ubiquinol oxidase chain III cyoC; cytochrome o ubiquinol oxidase chain III cyoC 1420493..1421128 Candidatus Protochlamydia amoebophila UWE25 2781405 YP_008191.1 CDS cyoD NC_005861.1 1421129 1421491 D similar to cytochrome O ubiquinol oxidase chain IV cyoD; cytochrome O ubiquinol oxidase chain IV cyoD 1421129..1421491 Candidatus Protochlamydia amoebophila UWE25 2781406 YP_008192.1 CDS cyoE NC_005861.1 1421484 1422335 D strongly similar to heme O synthase (=protoheme IX farnesyltransferase ) cyoE; heme O synthase CyoE 1421484..1422335 Candidatus Protochlamydia amoebophila UWE25 2781407 YP_008193.1 CDS pc1194 NC_005861.1 1423076 1428121 D hypothetical protein 1423076..1428121 Candidatus Protochlamydia amoebophila UWE25 2780624 YP_008194.1 CDS pc1195 NC_005861.1 1428388 1428618 D hypothetical protein 1428388..1428618 Candidatus Protochlamydia amoebophila UWE25 2780625 YP_008195.1 CDS pc1196 NC_005861.1 1428881 1429189 D hypothetical protein 1428881..1429189 Candidatus Protochlamydia amoebophila UWE25 2780626 YP_008196.1 CDS pc1197 NC_005861.1 1429613 1431613 D hypothetical protein 1429613..1431613 Candidatus Protochlamydia amoebophila UWE25 2779389 YP_008197.1 CDS pc1198 NC_005861.1 1431772 1432131 R hypothetical protein complement(1431772..1432131) Candidatus Protochlamydia amoebophila UWE25 2779390 YP_008198.1 CDS pc1199 NC_005861.1 1432423 1432755 D hypothetical protein 1432423..1432755 Candidatus Protochlamydia amoebophila UWE25 2779391 YP_008199.1 CDS pc1200 NC_005861.1 1432859 1433215 D hypothetical protein 1432859..1433215 Candidatus Protochlamydia amoebophila UWE25 2781288 YP_008200.1 CDS pc1201 NC_005861.1 1433201 1433911 R hypothetical protein complement(1433201..1433911) Candidatus Protochlamydia amoebophila UWE25 2781289 YP_008201.1 CDS pc1202 NC_005861.1 1434125 1434541 R hypothetical protein complement(1434125..1434541) Candidatus Protochlamydia amoebophila UWE25 2781290 YP_008202.1 CDS pc1203 NC_005861.1 1434620 1435102 R hypothetical protein complement(1434620..1435102) Candidatus Protochlamydia amoebophila UWE25 2780012 YP_008203.1 CDS pc1204 NC_005861.1 1435267 1436049 R hypothetical protein complement(1435267..1436049) Candidatus Protochlamydia amoebophila UWE25 2780013 YP_008204.1 CDS pc1205 NC_005861.1 1436052 1436777 R hypothetical protein complement(1436052..1436777) Candidatus Protochlamydia amoebophila UWE25 2780014 YP_008205.1 CDS pc1206 NC_005861.1 1437066 1437299 D hypothetical protein 1437066..1437299 Candidatus Protochlamydia amoebophila UWE25 2781071 YP_008206.1 CDS pc1207 NC_005861.1 1437598 1439001 D hypothetical protein 1437598..1439001 Candidatus Protochlamydia amoebophila UWE25 2781072 YP_008207.1 CDS pc1208 NC_005861.1 1439003 1441525 R hypothetical protein complement(1439003..1441525) Candidatus Protochlamydia amoebophila UWE25 2781073 YP_008208.1 CDS pc1209 NC_005861.1 1441658 1441840 D hypothetical protein 1441658..1441840 Candidatus Protochlamydia amoebophila UWE25 2780823 YP_008209.1 CDS pc1210 NC_005861.1 1442127 1442309 R hypothetical protein complement(1442127..1442309) Candidatus Protochlamydia amoebophila UWE25 2780824 YP_008210.1 CDS cnp NC_005861.1 1442396 1443226 D similar to metalloprotease; metalloprotease 1442396..1443226 Candidatus Protochlamydia amoebophila UWE25 2779823 YP_008211.1 CDS pc1212 NC_005861.1 1443308 1444417 D hypothetical protein 1443308..1444417 Candidatus Protochlamydia amoebophila UWE25 2780825 YP_008212.1 CDS pc1213 NC_005861.1 1444898 1445164 D hypothetical protein 1444898..1445164 Candidatus Protochlamydia amoebophila UWE25 2779764 YP_008213.1 CDS pc1214 NC_005861.1 1445318 1445653 D hypothetical protein 1445318..1445653 Candidatus Protochlamydia amoebophila UWE25 2779765 YP_008214.1 CDS pc1215 NC_005861.1 1446294 1446674 D hypothetical protein 1446294..1446674 Candidatus Protochlamydia amoebophila UWE25 2779766 YP_008215.1 CDS pc1216 NC_005861.1 1446833 1447984 D hypothetical protein 1446833..1447984 Candidatus Protochlamydia amoebophila UWE25 2780565 YP_008216.1 CDS glnQ NC_005861.1 1448054 1448743 D similar to ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1448054..1448743 Candidatus Protochlamydia amoebophila UWE25 2779854 YP_008217.1 CDS pc1218 NC_005861.1 1448740 1449804 D hypothetical protein 1448740..1449804 Candidatus Protochlamydia amoebophila UWE25 2780566 YP_008218.1 CDS oprM NC_005861.1 1449808 1451268 D similar to outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump; outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump 1449808..1451268 Candidatus Protochlamydia amoebophila UWE25 2779620 YP_008219.1 CDS dhcR7 NC_005861.1 1451379 1452686 D similar to 7-dehydrocholesterol reductase; 7-dehydrocholesterol reductase 1451379..1452686 Candidatus Protochlamydia amoebophila UWE25 2780936 YP_008220.1 CDS mutS NC_005861.1 1452876 1455452 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1452876..1455452 Candidatus Protochlamydia amoebophila UWE25 2779580 YP_008221.1 CDS pc1222 NC_005861.1 1455649 1455849 D hypothetical protein 1455649..1455849 Candidatus Protochlamydia amoebophila UWE25 2780567 YP_008222.1 CDS pc1223 NC_005861.1 1456080 1456802 D hypothetical protein 1456080..1456802 Candidatus Protochlamydia amoebophila UWE25 2779562 YP_008223.1 CDS pc1224 NC_005861.1 1456803 1457747 D hypothetical protein 1456803..1457747 Candidatus Protochlamydia amoebophila UWE25 2779563 YP_008224.1 CDS priA NC_005861.1 1457750 1459987 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1457750..1459987 Candidatus Protochlamydia amoebophila UWE25 2779422 YP_008225.1 CDS pc1226 NC_005861.1 1460323 1461750 D hypothetical protein 1460323..1461750 Candidatus Protochlamydia amoebophila UWE25 2779564 YP_008226.1 CDS pc1227 NC_005861.1 1461806 1462048 D hypothetical protein 1461806..1462048 Candidatus Protochlamydia amoebophila UWE25 2781415 YP_008227.1 CDS lysS NC_005861.1 1462049 1463638 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1462049..1463638 Candidatus Protochlamydia amoebophila UWE25 2780647 YP_008228.1 CDS pc1229 NC_005861.1 1463679 1463954 D hypothetical protein 1463679..1463954 Candidatus Protochlamydia amoebophila UWE25 2781416 YP_008229.1 CDS pc1230 NC_005861.1 1464063 1465328 R hypothetical protein complement(1464063..1465328) Candidatus Protochlamydia amoebophila UWE25 2781417 YP_008230.1 CDS pc1231 NC_005861.1 1465793 1466857 D hypothetical protein 1465793..1466857 Candidatus Protochlamydia amoebophila UWE25 2780027 YP_008231.1 CDS pc1232 NC_005861.1 1466878 1467234 D hypothetical protein 1466878..1467234 Candidatus Protochlamydia amoebophila UWE25 2780028 YP_008232.1 CDS pc1233 NC_005861.1 1467290 1468597 R hypothetical protein complement(1467290..1468597) Candidatus Protochlamydia amoebophila UWE25 2780029 YP_008233.1 CDS pc1234 NC_005861.1 1468920 1469171 R hypothetical protein complement(1468920..1469171) Candidatus Protochlamydia amoebophila UWE25 2780335 YP_008234.1 CDS cysS NC_005861.1 1469182 1470618 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1469182..1470618) Candidatus Protochlamydia amoebophila UWE25 2781443 YP_008235.1 CDS aas NC_005861.1 1470823 1473540 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase complement(1470823..1473540) Candidatus Protochlamydia amoebophila UWE25 2780135 YP_008236.1 CDS mutT NC_005861.1 1473872 1474225 R similar to dGTP pyrophosphohydrolase, mutT; dGTP pyrophosphohydrolase, mutT complement(1473872..1474225) Candidatus Protochlamydia amoebophila UWE25 2779582 YP_008237.1 CDS fabF NC_005861.1 1474303 1475559 R FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(1474303..1475559) Candidatus Protochlamydia amoebophila UWE25 2780154 YP_008238.1 CDS pc1239 NC_005861.1 1475642 1476022 R hypothetical protein complement(1475642..1476022) Candidatus Protochlamydia amoebophila UWE25 2780336 YP_008239.1 CDS glnA NC_005861.1 1476326 1478503 R similar to glutamate-ammonia ligase (=glutamine synthetase) type III; glutamate-ammonia ligase (=glutamine synthetase) type III complement(1476326..1478503) Candidatus Protochlamydia amoebophila UWE25 2780380 YP_008240.1 CDS pc1241 NC_005861.1 1478726 1479367 R hypothetical protein complement(1478726..1479367) Candidatus Protochlamydia amoebophila UWE25 2780337 YP_008241.1 CDS pc1242 NC_005861.1 1479460 1481181 R hypothetical protein complement(1479460..1481181) Candidatus Protochlamydia amoebophila UWE25 2780653 YP_008242.1 CDS miaA NC_005861.1 1481691 1482725 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1481691..1482725) Candidatus Protochlamydia amoebophila UWE25 2781014 YP_008243.1 CDS spoIiaa NC_005861.1 1482874 1483227 R similar to sigma regulatory factor; sigma regulatory factor complement(1482874..1483227) Candidatus Protochlamydia amoebophila UWE25 2780131 YP_008244.1 CDS uvrA NC_005861.1 1483362 1486175 D similar to excinuclease ABC chain A; excinuclease ABC chain A 1483362..1486175 Candidatus Protochlamydia amoebophila UWE25 2780838 YP_008245.1 CDS pc1246 NC_005861.1 1486626 1487396 R hypothetical protein complement(1486626..1487396) Candidatus Protochlamydia amoebophila UWE25 2780654 YP_008246.1 CDS murC NC_005861.1 1487532 1488896 R similar to UDP-N-acetylmuramate-alanine ligase murC; UDP-N-acetylmuramate-alanine ligase murC complement(1487532..1488896) Candidatus Protochlamydia amoebophila UWE25 2780006 YP_008247.1 CDS murG NC_005861.1 1488899 1490029 R similar to UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG complement(1488899..1490029) Candidatus Protochlamydia amoebophila UWE25 2780521 YP_008248.1 CDS ftsW NC_005861.1 1490011 1491120 R similar to cell division protein ftsW; cell division protein ftsW complement(1490011..1491120) Candidatus Protochlamydia amoebophila UWE25 2779423 YP_008249.1 CDS lytF NC_005861.1 1491127 1491861 R similar to muropeptidase (autolysin); muropeptidase (autolysin) complement(1491127..1491861) Candidatus Protochlamydia amoebophila UWE25 2779477 YP_008250.1 CDS murD NC_005861.1 1491898 1493232 R similar to UDP-N-acetylmuramoylalanine-D-glutamate ligase murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase murD complement(1491898..1493232) Candidatus Protochlamydia amoebophila UWE25 2780007 YP_008251.1 CDS mraY NC_005861.1 1493247 1494479 R similar to phospho-N-acetylmuramoyl-pentapeptide-transferase mraY; phospho-N-acetylmuramoyl-pentapeptide- transferase mraY complement(1493247..1494479) Candidatus Protochlamydia amoebophila UWE25 2780217 YP_008252.1 CDS murF NC_005861.1 1494503 1495840 R similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate -D-alanyl-D-alanine-ligase murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate- D-alanyl-D-alanine-ligase murF complement(1494503..1495840) Candidatus Protochlamydia amoebophila UWE25 2780520 YP_008253.1 CDS pc1254 NC_005861.1 1495852 1496088 R hypothetical protein complement(1495852..1496088) Candidatus Protochlamydia amoebophila UWE25 2780655 YP_008254.1 CDS pc1255 NC_005861.1 1496370 1497515 D similar to eucaryotic stearoyl-CoA 9-desaturase; eucaryotic stearoyl-CoA 9-desaturase 1496370..1497515 Candidatus Protochlamydia amoebophila UWE25 2780702 YP_008255.1 CDS ipgD NC_005861.1 1497846 1499663 D similar to virulence protein ipgD (Shigella flexneri plasmid pINV); virulence protein IpgD 1497846..1499663 Candidatus Protochlamydia amoebophila UWE25 2780545 YP_008256.1 CDS pc1257 NC_005861.1 1499957 1500772 D hypothetical protein 1499957..1500772 Candidatus Protochlamydia amoebophila UWE25 2780703 YP_008257.1 CDS pc1258 NC_005861.1 1501002 1501199 D hypothetical protein 1501002..1501199 Candidatus Protochlamydia amoebophila UWE25 2780704 YP_008258.1 CDS groEl NC_005861.1 1501351 1502955 D strongly similar to heat shock protein GroEL; molecular chaperone GroEL 1501351..1502955 Candidatus Protochlamydia amoebophila UWE25 2780168 YP_008259.1 CDS pc1260 NC_005861.1 1503486 1504886 R hypothetical protein complement(1503486..1504886) Candidatus Protochlamydia amoebophila UWE25 2780353 YP_008260.1 CDS pc1261 NC_005861.1 1505354 1505800 D hypothetical protein 1505354..1505800 Candidatus Protochlamydia amoebophila UWE25 2780354 YP_008261.1 CDS pgm NC_005861.1 1506735 1508513 D similar to phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase 1506735..1508513 Candidatus Protochlamydia amoebophila UWE25 2779786 YP_008262.1 CDS pc1263 NC_005861.1 1508629 1509456 R hypothetical protein complement(1508629..1509456) Candidatus Protochlamydia amoebophila UWE25 2780355 YP_008263.1 CDS neuB NC_005861.1 1509676 1510731 R similar to sialic acid synthase; sialic acid synthase complement(1509676..1510731) Candidatus Protochlamydia amoebophila UWE25 2780637 YP_008264.1 CDS deaD NC_005861.1 1510740 1511963 R similar to ATP-dependent RNA helicase; ATP-dependent RNA helicase complement(1510740..1511963) Candidatus Protochlamydia amoebophila UWE25 2779739 YP_008265.1 CDS pc1266 NC_005861.1 1511948 1512781 R hypothetical protein complement(1511948..1512781) Candidatus Protochlamydia amoebophila UWE25 2779642 YP_008266.1 CDS pc1267 NC_005861.1 1512760 1514835 R hypothetical protein complement(1512760..1514835) Candidatus Protochlamydia amoebophila UWE25 2779643 YP_008267.1 CDS pc1268 NC_005861.1 1515171 1515848 D hypothetical protein 1515171..1515848 Candidatus Protochlamydia amoebophila UWE25 2779644 YP_008268.1 CDS lexA NC_005861.1 1515854 1516465 D similar to SOS response regulator lexA; SOS response regulator lexA 1515854..1516465 Candidatus Protochlamydia amoebophila UWE25 2780833 YP_008269.1 CDS pssA NC_005861.1 1516627 1517490 R similar to CDPdiacylglycerol-serine O-phosphatidyltransferase; cdpdiacylglycerol-serine O-phosphatidyltransferase complement(1516627..1517490) Candidatus Protochlamydia amoebophila UWE25 2779792 YP_008270.1 CDS pc1271 NC_005861.1 1518275 1521250 D hypothetical protein 1518275..1521250 Candidatus Protochlamydia amoebophila UWE25 2779441 YP_008271.1 CDS pc1272 NC_005861.1 1522243 1524099 D hypothetical protein 1522243..1524099 Candidatus Protochlamydia amoebophila UWE25 2779442 YP_008272.1 CDS pc1273 NC_005861.1 1524407 1525651 R hypothetical protein complement(1524407..1525651) Candidatus Protochlamydia amoebophila UWE25 2779443 YP_008273.1 CDS pc1274 NC_005861.1 1526503 1526919 D hypothetical protein 1526503..1526919 Candidatus Protochlamydia amoebophila UWE25 2779606 YP_008274.1 CDS pc1275 NC_005861.1 1526928 1527149 D hypothetical protein 1526928..1527149 Candidatus Protochlamydia amoebophila UWE25 2779607 YP_008275.1 CDS pc1276 NC_005861.1 1527642 1529645 D hypothetical protein 1527642..1529645 Candidatus Protochlamydia amoebophila UWE25 2779608 YP_008276.1 CDS pc1277 NC_005861.1 1529832 1530257 R hypothetical protein complement(1529832..1530257) Candidatus Protochlamydia amoebophila UWE25 2780621 YP_008277.1 CDS pc1278 NC_005861.1 1531436 1533631 D hypothetical protein 1531436..1533631 Candidatus Protochlamydia amoebophila UWE25 2780622 YP_008278.1 CDS pc1279 NC_005861.1 1533886 1534161 R hypothetical protein complement(1533886..1534161) Candidatus Protochlamydia amoebophila UWE25 2780623 YP_008279.1 CDS pc1280 NC_005861.1 1534434 1534736 R hypothetical protein complement(1534434..1534736) Candidatus Protochlamydia amoebophila UWE25 2781216 YP_008280.1 CDS pc1281 NC_005861.1 1535447 1535668 D hypothetical protein 1535447..1535668 Candidatus Protochlamydia amoebophila UWE25 2781217 YP_008281.1 CDS pc1282 NC_005861.1 1535907 1539155 R hypothetical protein complement(1535907..1539155) Candidatus Protochlamydia amoebophila UWE25 2781218 YP_008282.1 CDS pc1283 NC_005861.1 1539939 1540220 D hypothetical protein 1539939..1540220 Candidatus Protochlamydia amoebophila UWE25 2780393 YP_008283.1 CDS pc1284 NC_005861.1 1540514 1540768 D hypothetical protein 1540514..1540768 Candidatus Protochlamydia amoebophila UWE25 2780394 YP_008284.1 CDS trmB NC_005861.1 1540860 1541537 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1540860..1541537 Candidatus Protochlamydia amoebophila UWE25 2780395 YP_008285.1 CDS pc1286 NC_005861.1 1541670 1542728 D hypothetical protein 1541670..1542728 Candidatus Protochlamydia amoebophila UWE25 2781265 YP_008286.1 CDS pc1287 NC_005861.1 1542735 1542932 R hypothetical protein complement(1542735..1542932) Candidatus Protochlamydia amoebophila UWE25 2781266 YP_008287.1 CDS pc1288 NC_005861.1 1542955 1543944 R hypothetical protein complement(1542955..1543944) Candidatus Protochlamydia amoebophila UWE25 2781267 YP_008288.1 CDS pc1289 NC_005861.1 1544115 1545557 D hypothetical protein 1544115..1545557 Candidatus Protochlamydia amoebophila UWE25 2781377 YP_008289.1 CDS pc1290 NC_005861.1 1545573 1546436 R hypothetical protein complement(1545573..1546436) Candidatus Protochlamydia amoebophila UWE25 2781378 YP_008290.1 CDS htrA NC_005861.1 1546640 1548094 R similar to serine proteinase; serine proteinase complement(1546640..1548094) Candidatus Protochlamydia amoebophila UWE25 2779691 YP_008291.1 CDS pc1292 NC_005861.1 1548229 1549863 R hypothetical protein complement(1548229..1549863) Candidatus Protochlamydia amoebophila UWE25 2781379 YP_008292.1 CDS pc1293 NC_005861.1 1550216 1551205 R hypothetical protein complement(1550216..1551205) Candidatus Protochlamydia amoebophila UWE25 2779935 YP_008293.1 CDS pc1294 NC_005861.1 1551192 1551419 D hypothetical protein 1551192..1551419 Candidatus Protochlamydia amoebophila UWE25 2779936 YP_008294.1 CDS pc1295 NC_005861.1 1551588 1552187 D hypothetical protein 1551588..1552187 Candidatus Protochlamydia amoebophila UWE25 2779937 YP_008295.1 CDS pc1296 NC_005861.1 1552198 1553343 R hypothetical protein complement(1552198..1553343) Candidatus Protochlamydia amoebophila UWE25 2781273 YP_008296.1 CDS sucD NC_005861.1 1553340 1554245 R strongly similar to succinate-CoA ligase (ADP-forming) alpha chain; succinate-CoA ligase (ADP-forming) alpha chain complement(1553340..1554245) Candidatus Protochlamydia amoebophila UWE25 2779905 YP_008297.1 CDS sucC NC_005861.1 1554249 1555418 R strongly similar to succinate-CoA ligase (ADP-forming) beta chain; succinate-CoA ligase (ADP-forming) beta chain complement(1554249..1555418) Candidatus Protochlamydia amoebophila UWE25 2780242 YP_008298.1 CDS ftsY NC_005861.1 1555569 1556498 D strongly similar to signal recognition particle; signal recognition particle protein 1555569..1556498 Candidatus Protochlamydia amoebophila UWE25 2779424 YP_008299.1 CDS pc1300 NC_005861.1 1556564 1557079 D hypothetical protein 1556564..1557079 Candidatus Protochlamydia amoebophila UWE25 2781274 YP_008300.1 CDS pc1301 NC_005861.1 1557076 1557627 R hypothetical protein complement(1557076..1557627) Candidatus Protochlamydia amoebophila UWE25 2781275 YP_008301.1 CDS galE NC_005861.1 1557808 1558776 D similar to UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1557808..1558776 Candidatus Protochlamydia amoebophila UWE25 2780448 YP_008302.1 CDS pc1303 NC_005861.1 1559070 1559261 R hypothetical protein complement(1559070..1559261) Candidatus Protochlamydia amoebophila UWE25 2781350 YP_008303.1 CDS pc1304 NC_005861.1 1559316 1559720 D hypothetical protein 1559316..1559720 Candidatus Protochlamydia amoebophila UWE25 2781351 YP_008304.1 CDS tyrP_4 NC_005861.1 1559888 1561102 R similar to tyrosine-specific transport protein; tyrosine-specific transport protein complement(1559888..1561102) Candidatus Protochlamydia amoebophila UWE25 2780309 YP_008305.1 CDS glmS NC_005861.1 1561129 1562952 R strongly similar to glutamine-fructose-6-phosphate transaminase (isomerizing); glutamine-fructose-6-phosphate transaminase (isomerizing) complement(1561129..1562952) Candidatus Protochlamydia amoebophila UWE25 2780377 YP_008306.1 CDS glmM NC_005861.1 1562980 1564443 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1562980..1564443) Candidatus Protochlamydia amoebophila UWE25 2780458 YP_008307.1 CDS pcnB NC_005861.1 1565019 1566293 D similar to Poly(A) polymerase; Poly(A) polymerase 1565019..1566293 Candidatus Protochlamydia amoebophila UWE25 2779816 YP_008308.1 CDS pc1309 NC_005861.1 1566274 1567044 D hypothetical protein 1566274..1567044 Candidatus Protochlamydia amoebophila UWE25 2781352 YP_008309.1 CDS dpm1 NC_005861.1 1567142 1567783 D similar to dolichol-phosphate mannosyltransferase; dolichol-phosphate mannosyltransferase 1567142..1567783 Candidatus Protochlamydia amoebophila UWE25 2780921 YP_008310.1 CDS pc1311 NC_005861.1 1567795 1568478 D hypothetical protein 1567795..1568478 Candidatus Protochlamydia amoebophila UWE25 2781250 YP_008311.2 CDS lpxB NC_005861.1 1568475 1569644 D similar to lipid A-disaccharide synthase; lipid A-disaccharide synthase 1568475..1569644 Candidatus Protochlamydia amoebophila UWE25 2781442 YP_008312.1 CDS pc1313 NC_005861.1 1569628 1570281 D hypothetical protein 1569628..1570281 Candidatus Protochlamydia amoebophila UWE25 2781251 YP_008313.1 CDS plsX NC_005861.1 1570339 1571358 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1570339..1571358) Candidatus Protochlamydia amoebophila UWE25 2779809 YP_008314.2 CDS rpmF NC_005861.1 1571379 1571561 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1571379..1571561) Candidatus Protochlamydia amoebophila UWE25 2781054 YP_008315.1 CDS pc1316 NC_005861.1 1571588 1572064 R hypothetical protein complement(1571588..1572064) Candidatus Protochlamydia amoebophila UWE25 2781252 YP_008316.1 CDS cafA NC_005861.1 1572846 1574384 D similar to ribonuclease G (axial filament protein); ribonuclease G (axial filament protein) 1572846..1574384 Candidatus Protochlamydia amoebophila UWE25 2780413 YP_008317.1 CDS ats1 NC_005861.1 1574385 1575383 D similar to glycerol-3-phosphate acyltransferase; glycerol-3-phosphate acyltransferase 1574385..1575383 Candidatus Protochlamydia amoebophila UWE25 2779815 YP_008318.1 CDS pc1319 NC_005861.1 1575597 1575932 D hypothetical protein 1575597..1575932 Candidatus Protochlamydia amoebophila UWE25 2780505 YP_008319.1 CDS pc1320 NC_005861.1 1576161 1576910 D hypothetical protein 1576161..1576910 Candidatus Protochlamydia amoebophila UWE25 2780506 YP_008320.1 CDS pc1321 NC_005861.1 1577036 1577854 D hypothetical protein 1577036..1577854 Candidatus Protochlamydia amoebophila UWE25 2780507 YP_008321.1 CDS pc1322 NC_005861.1 1578026 1578358 D hypothetical protein 1578026..1578358 Candidatus Protochlamydia amoebophila UWE25 2780698 YP_008322.1 CDS pc1323 NC_005861.1 1578709 1579587 D hypothetical protein 1578709..1579587 Candidatus Protochlamydia amoebophila UWE25 2780699 YP_008323.1 CDS proS NC_005861.1 1580274 1581797 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1580274..1581797) Candidatus Protochlamydia amoebophila UWE25 2779500 YP_008324.1 CDS pabC NC_005861.1 1581944 1582786 R similar to 4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase complement(1581944..1582786) Candidatus Protochlamydia amoebophila UWE25 2779660 YP_008325.1 CDS pc1326 NC_005861.1 1582764 1583255 R hypothetical protein complement(1582764..1583255) Candidatus Protochlamydia amoebophila UWE25 2780700 YP_008326.1 CDS pabB NC_005861.1 1583393 1584697 R similar to para-aminobenzoate synthase component I; para-aminobenzoate synthase component I complement(1583393..1584697) Candidatus Protochlamydia amoebophila UWE25 2779659 YP_008327.1 CDS pc1328 NC_005861.1 1584897 1585634 R hypothetical protein complement(1584897..1585634) Candidatus Protochlamydia amoebophila UWE25 2780087 YP_008328.1 CDS pc1329 NC_005861.1 1585674 1586381 R hypothetical protein complement(1585674..1586381) Candidatus Protochlamydia amoebophila UWE25 2780088 YP_008329.1 CDS pc1330 NC_005861.1 1586385 1586897 R hypothetical protein complement(1586385..1586897) Candidatus Protochlamydia amoebophila UWE25 2780089 YP_008330.1 CDS prfB NC_005861.1 1586897 1587877 R strongly similar to peptide chain release factor RF-2; peptide chain release factor 2 complement(1586897..1587877) Candidatus Protochlamydia amoebophila UWE25 2779421 YP_008331.1 CDS pc1332 NC_005861.1 1588424 1589269 D hypothetical protein 1588424..1589269 Candidatus Protochlamydia amoebophila UWE25 2781383 YP_008332.1 CDS pc1333 NC_005861.1 1590153 1591976 D similar to ABC transporter ATP-binding protein; ABC transporter ATP-binding protein 1590153..1591976 Candidatus Protochlamydia amoebophila UWE25 2781384 YP_008333.1 CDS tpx NC_005861.1 1592469 1592756 D similar to thioredoxin peroxidase; thioredoxin peroxidase 1592469..1592756 Candidatus Protochlamydia amoebophila UWE25 2779680 YP_008334.1 CDS pc1335 NC_005861.1 1592839 1593366 D hypothetical protein 1592839..1593366 Candidatus Protochlamydia amoebophila UWE25 2781385 YP_008335.1 CDS aac NC_005861.1 1593412 1593912 D similar to aminoglycoside N6'-acetyltransferase; aminoglycoside N6'-acetyltransferase 1593412..1593912 Candidatus Protochlamydia amoebophila UWE25 2780134 YP_008336.1 CDS pc1337 NC_005861.1 1593986 1594591 R hypothetical protein complement(1593986..1594591) Candidatus Protochlamydia amoebophila UWE25 2780310 YP_008337.1 CDS tag NC_005861.1 1594745 1595311 R strongly similar to 3-methyladenine-DNA glycosylase I; 3-methyladenine DNA glycosylase complement(1594745..1595311) Candidatus Protochlamydia amoebophila UWE25 2781129 YP_008338.1 CDS pc1339 NC_005861.1 1595596 1595787 R hypothetical protein complement(1595596..1595787) Candidatus Protochlamydia amoebophila UWE25 2780311 YP_008339.1 CDS pc1340 NC_005861.1 1596033 1596254 R hypothetical protein complement(1596033..1596254) Candidatus Protochlamydia amoebophila UWE25 2780312 YP_008340.1 CDS pc1341 NC_005861.1 1596253 1601547 D hypothetical protein 1596253..1601547 Candidatus Protochlamydia amoebophila UWE25 2780847 YP_008341.1 CDS pc1342 NC_005861.1 1602165 1602368 D hypothetical protein 1602165..1602368 Candidatus Protochlamydia amoebophila UWE25 2780848 YP_008342.1 CDS ntt_5 NC_005861.1 1602411 1603880 R similar to ADP/ATP translocase; ADP/ATP translocase complement(1602411..1603880) Candidatus Protochlamydia amoebophila UWE25 2780692 YP_008343.1 CDS arsC NC_005861.1 1604083 1604430 R similar to arsenate reductase; arsenate reductase complement(1604083..1604430) Candidatus Protochlamydia amoebophila UWE25 2779769 YP_008344.1 CDS pc1345 NC_005861.1 1605369 1606040 D hypothetical protein 1605369..1606040 Candidatus Protochlamydia amoebophila UWE25 2780849 YP_008345.1 CDS pc1346 NC_005861.1 1606054 1608501 D hypothetical protein 1606054..1608501 Candidatus Protochlamydia amoebophila UWE25 2779996 YP_008346.1 CDS pc1347 NC_005861.1 1608662 1610029 R hypothetical protein complement(1608662..1610029) Candidatus Protochlamydia amoebophila UWE25 2779997 YP_008347.1 CDS nrdA NC_005861.1 1610455 1612776 R strongly similar to ribonucleoside-diphosphate reductase large chain; ribonucleoside-diphosphate reductase large chain complement(1610455..1612776) Candidatus Protochlamydia amoebophila UWE25 2779701 YP_008348.1 CDS nrdB NC_005861.1 1612788 1613759 R strongly similar to ribonucleoside-diphosphate reductase small chain; ribonucleoside-diphosphate reductase small chain complement(1612788..1613759) Candidatus Protochlamydia amoebophila UWE25 2779702 YP_008349.1 CDS pc1350 NC_005861.1 1613746 1613931 R hypothetical protein complement(1613746..1613931) Candidatus Protochlamydia amoebophila UWE25 2779998 YP_008350.1 CDS pc1351 NC_005861.1 1615208 1615456 R hypothetical protein complement(1615208..1615456) Candidatus Protochlamydia amoebophila UWE25 2780057 YP_008351.1 CDS pc1352 NC_005861.1 1615438 1615665 R hypothetical protein complement(1615438..1615665) Candidatus Protochlamydia amoebophila UWE25 2780058 YP_008352.1 CDS pc1353 NC_005861.1 1615851 1616288 D hypothetical protein 1615851..1616288 Candidatus Protochlamydia amoebophila UWE25 2780059 YP_008353.1 CDS pc1354 NC_005861.1 1616669 1618078 D hypothetical protein 1616669..1618078 Candidatus Protochlamydia amoebophila UWE25 2781293 YP_008354.1 CDS pc1355 NC_005861.1 1618094 1620697 R hypothetical protein complement(1618094..1620697) Candidatus Protochlamydia amoebophila UWE25 2781294 YP_008355.1 CDS pc1356 NC_005861.1 1620670 1620855 R hypothetical protein complement(1620670..1620855) Candidatus Protochlamydia amoebophila UWE25 2781295 YP_008356.1 CDS pc1357 NC_005861.1 1620860 1621054 R hypothetical protein complement(1620860..1621054) Candidatus Protochlamydia amoebophila UWE25 2781253 YP_008357.1 CDS pc1358 NC_005861.1 1621290 1621724 D hypothetical protein 1621290..1621724 Candidatus Protochlamydia amoebophila UWE25 2781254 YP_008358.1 CDS pc1359 NC_005861.1 1621818 1623983 D hypothetical protein 1621818..1623983 Candidatus Protochlamydia amoebophila UWE25 2781255 YP_008359.1 CDS pc1360 NC_005861.1 1623980 1626811 D hypothetical protein 1623980..1626811 Candidatus Protochlamydia amoebophila UWE25 2780568 YP_008360.1 CDS pc1361 NC_005861.1 1626808 1628703 D hypothetical protein 1626808..1628703 Candidatus Protochlamydia amoebophila UWE25 2780569 YP_008361.1 CDS ackA NC_005861.1 1628686 1629873 R strongly similar to acetate kinase; acetate kinase complement(1628686..1629873) Candidatus Protochlamydia amoebophila UWE25 2781315 YP_008362.1 CDS pc1363 NC_005861.1 1630105 1633470 D hypothetical protein 1630105..1633470 Candidatus Protochlamydia amoebophila UWE25 2780570 YP_008363.1 CDS pc1364 NC_005861.1 1633654 1634979 R strongly similar to two-component response regulator; two-component response regulator complement(1633654..1634979) Candidatus Protochlamydia amoebophila UWE25 2780060 YP_008364.1 CDS pc1365 NC_005861.1 1635004 1636236 R similar to two-component sensor histidine kinase; two-component sensor histidine kinase complement(1635004..1636236) Candidatus Protochlamydia amoebophila UWE25 2780061 YP_008365.1 CDS pc1366 NC_005861.1 1636644 1636862 D hypothetical protein 1636644..1636862 Candidatus Protochlamydia amoebophila UWE25 2780062 YP_008366.1 CDS rpsD NC_005861.1 1637036 1637656 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1637036..1637656 Candidatus Protochlamydia amoebophila UWE25 2779570 YP_008367.1 CDS pc1368 NC_005861.1 1637747 1637995 D hypothetical protein 1637747..1637995 Candidatus Protochlamydia amoebophila UWE25 2780063 YP_008368.1 CDS pc1369 NC_005861.1 1638094 1639224 D similar to glycosyltransferase; glycosyltransferase 1638094..1639224 Candidatus Protochlamydia amoebophila UWE25 2779668 YP_008369.1 CDS pc1370 NC_005861.1 1639466 1640914 R hypothetical protein complement(1639466..1640914) Candidatus Protochlamydia amoebophila UWE25 2779669 YP_008370.1 CDS pckG NC_005861.1 1640925 1642700 R GTP; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase complement(1640925..1642700) Candidatus Protochlamydia amoebophila UWE25 2779819 YP_008371.1 CDS mreB NC_005861.1 1642725 1643816 R strongly similar to rod shape-determining protein mreB; rod shape-determining protein MreB complement(1642725..1643816) Candidatus Protochlamydia amoebophila UWE25 2780218 YP_008372.1 CDS pc1373 NC_005861.1 1643890 1644075 R hypothetical protein complement(1643890..1644075) Candidatus Protochlamydia amoebophila UWE25 2779670 YP_008373.1 CDS pc1374 NC_005861.1 1644327 1647812 R hypothetical protein complement(1644327..1647812) Candidatus Protochlamydia amoebophila UWE25 2780350 YP_008374.1 CDS tig NC_005861.1 1648434 1649741 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1648434..1649741 Candidatus Protochlamydia amoebophila UWE25 2780384 YP_008375.1 CDS clpP NC_005861.1 1650179 1650802 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1650179..1650802 Candidatus Protochlamydia amoebophila UWE25 2779715 YP_008376.1 CDS clpX NC_005861.1 1651041 1652282 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1651041..1652282 Candidatus Protochlamydia amoebophila UWE25 2779716 YP_008377.1 CDS pc1378 NC_005861.1 1652477 1653226 D hypothetical protein 1652477..1653226 Candidatus Protochlamydia amoebophila UWE25 2780351 YP_008378.1 CDS pc1379 NC_005861.1 1653231 1654154 R hypothetical protein complement(1653231..1654154) Candidatus Protochlamydia amoebophila UWE25 2780352 YP_008379.1 CDS pc1380 NC_005861.1 1654345 1656954 D hypothetical protein 1654345..1656954 Candidatus Protochlamydia amoebophila UWE25 2780591 YP_008380.1 CDS pc1381 NC_005861.1 1657029 1658273 D hypothetical protein 1657029..1658273 Candidatus Protochlamydia amoebophila UWE25 2780592 YP_008381.1 CDS pc1382 NC_005861.1 1658367 1659815 D hypothetical protein 1658367..1659815 Candidatus Protochlamydia amoebophila UWE25 2780593 YP_008382.1 CDS pc1383 NC_005861.1 1659904 1661211 D hypothetical protein 1659904..1661211 Candidatus Protochlamydia amoebophila UWE25 2781000 YP_008383.1 CDS lcrH NC_005861.1 1661342 1661914 D similar to low calcium response protein H; low calcium response protein H 1661342..1661914 Candidatus Protochlamydia amoebophila UWE25 2780587 YP_008384.1 CDS pc1385 NC_005861.1 1662033 1664282 D hypothetical protein 1662033..1664282 Candidatus Protochlamydia amoebophila UWE25 2781001 YP_008385.1 CDS lcrH NC_005861.1 1664295 1664888 D similar to low calcium response protein H; low calcium response protein H 1664295..1664888 Candidatus Protochlamydia amoebophila UWE25 2781276 YP_008386.1 CDS pc1387 NC_005861.1 1664891 1665565 D hypothetical protein 1664891..1665565 Candidatus Protochlamydia amoebophila UWE25 2781002 YP_008387.1 CDS pc1388 NC_005861.1 1665596 1666546 D hypothetical protein 1665596..1666546 Candidatus Protochlamydia amoebophila UWE25 2779832 YP_008388.1 CDS pc1389 NC_005861.1 1666578 1667660 D hypothetical protein 1666578..1667660 Candidatus Protochlamydia amoebophila UWE25 2779833 YP_008389.1 CDS pc1390 NC_005861.1 1667910 1668296 D hypothetical protein 1667910..1668296 Candidatus Protochlamydia amoebophila UWE25 2779834 YP_008390.1 CDS pc1391 NC_005861.1 1668394 1670223 D hypothetical protein 1668394..1670223 Candidatus Protochlamydia amoebophila UWE25 2781394 YP_008391.1 CDS pc1392 NC_005861.1 1670270 1670512 D hypothetical protein 1670270..1670512 Candidatus Protochlamydia amoebophila UWE25 2781395 YP_008392.1 CDS pc1393 NC_005861.1 1670600 1671064 D hypothetical protein 1670600..1671064 Candidatus Protochlamydia amoebophila UWE25 2781396 YP_008393.1 CDS pc1394 NC_005861.1 1671073 1671756 D similar to UDPgalactose-glucose galactosyltransferase; udpgalactose-glucose galactosyltransferase 1671073..1671756 Candidatus Protochlamydia amoebophila UWE25 2781164 YP_008394.1 CDS pc1395 NC_005861.1 1672066 1672344 D hypothetical protein 1672066..1672344 Candidatus Protochlamydia amoebophila UWE25 2781165 YP_008395.1 CDS pc1396 NC_005861.1 1672490 1673341 D hypothetical protein 1672490..1673341 Candidatus Protochlamydia amoebophila UWE25 2781166 YP_008396.1 CDS sctN NC_005861.1 1673399 1674763 D strongly similar to type III secretion pathway protein sctN; type III secretion system ATPase 1673399..1674763 Candidatus Protochlamydia amoebophila UWE25 2779419 YP_008397.1 CDS pc1398 NC_005861.1 1674777 1675274 D hypothetical protein 1674777..1675274 Candidatus Protochlamydia amoebophila UWE25 2781167 YP_008398.1 CDS pc1399 NC_005861.1 1675345 1676337 D hypothetical protein 1675345..1676337 Candidatus Protochlamydia amoebophila UWE25 2781113 YP_008399.1 CDS sctQ NC_005861.1 1676642 1677979 D similar to flagellar motor switch protein (= type III secretion translocase SctQ); type III secretion system protein 1676642..1677979 Candidatus Protochlamydia amoebophila UWE25 2780666 YP_008400.1 CDS pkn NC_005861.1 1678055 1679644 D similar to serine/threonine protein kinase; serine/threonine protein kinase 1678055..1679644 Candidatus Protochlamydia amoebophila UWE25 2780533 YP_008401.1 CDS pc1402 NC_005861.1 1679924 1680400 D hypothetical protein 1679924..1680400 Candidatus Protochlamydia amoebophila UWE25 2781114 YP_008402.1 CDS pc1403 NC_005861.1 1681162 1681563 R hypothetical protein complement(1681162..1681563) Candidatus Protochlamydia amoebophila UWE25 2781115 YP_008403.1 CDS pc1404 NC_005861.1 1681569 1682441 R hypothetical protein complement(1681569..1682441) Candidatus Protochlamydia amoebophila UWE25 2781233 YP_008404.1 CDS pc1405 NC_005861.1 1682779 1683099 R hypothetical protein complement(1682779..1683099) Candidatus Protochlamydia amoebophila UWE25 2781234 YP_008405.1 CDS pc1406 NC_005861.1 1683529 1683825 D hypothetical protein 1683529..1683825 Candidatus Protochlamydia amoebophila UWE25 2781235 YP_008406.1 CDS pc1407 NC_005861.1 1683880 1684227 D hypothetical protein 1683880..1684227 Candidatus Protochlamydia amoebophila UWE25 2781158 YP_008407.1 CDS pc1408 NC_005861.1 1684227 1684778 D hypothetical protein 1684227..1684778 Candidatus Protochlamydia amoebophila UWE25 2781159 YP_008408.1 CDS pc1409 NC_005861.1 1684827 1685087 R hypothetical protein complement(1684827..1685087) Candidatus Protochlamydia amoebophila UWE25 2781160 YP_008409.1 CDS pc1410 NC_005861.1 1685329 1686447 R hypothetical protein complement(1685329..1686447) Candidatus Protochlamydia amoebophila UWE25 2779874 YP_008410.1 CDS pc1411 NC_005861.1 1686882 1687082 D hypothetical protein 1686882..1687082 Candidatus Protochlamydia amoebophila UWE25 2779875 YP_008411.1 CDS pc1412 NC_005861.1 1687470 1687673 D hypothetical protein 1687470..1687673 Candidatus Protochlamydia amoebophila UWE25 2779876 YP_008412.1 CDS pc1413 NC_005861.1 1687923 1688222 R hypothetical protein complement(1687923..1688222) Candidatus Protochlamydia amoebophila UWE25 2779519 YP_008413.1 CDS pc1414 NC_005861.1 1688209 1688523 R hypothetical protein complement(1688209..1688523) Candidatus Protochlamydia amoebophila UWE25 2779520 YP_008414.1 CDS pc1415 NC_005861.1 1689469 1690965 D hypothetical protein 1689469..1690965 Candidatus Protochlamydia amoebophila UWE25 2779521 YP_008415.1 CDS pc1416 NC_005861.1 1691344 1691529 D hypothetical protein 1691344..1691529 Candidatus Protochlamydia amoebophila UWE25 2779892 YP_008416.1 CDS pc1417 NC_005861.1 1691799 1693271 D hypothetical protein 1691799..1693271 Candidatus Protochlamydia amoebophila UWE25 2779893 YP_008417.1 CDS pc1418 NC_005861.1 1693840 1694943 D hypothetical protein 1693840..1694943 Candidatus Protochlamydia amoebophila UWE25 2779894 YP_008418.1 CDS pc1419 NC_005861.1 1695418 1696245 D hypothetical protein 1695418..1696245 Candidatus Protochlamydia amoebophila UWE25 2779895 YP_008419.1 CDS pc1420 NC_005861.1 1696410 1696814 R hypothetical protein complement(1696410..1696814) Candidatus Protochlamydia amoebophila UWE25 2779612 YP_008420.1 CDS pc1421 NC_005861.1 1697418 1697735 D hypothetical protein 1697418..1697735 Candidatus Protochlamydia amoebophila UWE25 2779613 YP_008421.1 CDS pc1422 NC_005861.1 1697757 1698062 D hypothetical protein 1697757..1698062 Candidatus Protochlamydia amoebophila UWE25 2779614 YP_008422.1 CDS traE NC_005861.1 1698071 1698640 D similar to F pilus assembly protein traE; F pilus assembly protein traE 1698071..1698640 Candidatus Protochlamydia amoebophila UWE25 2780488 YP_008423.1 CDS pc1424 NC_005861.1 1698641 1699333 D hypothetical protein 1698641..1699333 Candidatus Protochlamydia amoebophila UWE25 2780830 YP_008424.1 CDS traB NC_005861.1 1699404 1700630 D similar to F pilus assembly protein traB; F pilus assembly protein traB 1699404..1700630 Candidatus Protochlamydia amoebophila UWE25 2779681 YP_008425.1 CDS pc1426 NC_005861.1 1700887 1701381 R hypothetical protein complement(1700887..1701381) Candidatus Protochlamydia amoebophila UWE25 2780831 YP_008426.1 CDS pc1427 NC_005861.1 1701456 1701896 R hypothetical protein complement(1701456..1701896) Candidatus Protochlamydia amoebophila UWE25 2780832 YP_008427.1 CDS pc1428 NC_005861.1 1701958 1702431 D hypothetical protein 1701958..1702431 Candidatus Protochlamydia amoebophila UWE25 2779456 YP_008428.1 CDS pc1429 NC_005861.1 1702424 1702798 D hypothetical protein 1702424..1702798 Candidatus Protochlamydia amoebophila UWE25 2779457 YP_008429.1 CDS traC NC_005861.1 1702800 1705286 D similar to inner-membrane protein traC; inner-membrane protein traC 1702800..1705286 Candidatus Protochlamydia amoebophila UWE25 2779682 YP_008430.1 CDS traF NC_005861.1 1705274 1705756 D similar to F pilus assembly protein traF; F pilus assembly protein traF 1705274..1705756 Candidatus Protochlamydia amoebophila UWE25 2780489 YP_008431.1 CDS traW NC_005861.1 1705741 1706373 D similar to F pilus assembly protein traW; F pilus assembly protein traW 1705741..1706373 Candidatus Protochlamydia amoebophila UWE25 2780207 YP_008432.1 CDS trbC NC_005861.1 1706382 1706978 D similar to F pilus assembly protein trbC; F pilus assembly protein trbC 1706382..1706978 Candidatus Protochlamydia amoebophila UWE25 2780208 YP_008433.1 CDS traU NC_005861.1 1707047 1707982 D similar to F pilus assembly protein traU; F pilus assembly protein traU 1707047..1707982 Candidatus Protochlamydia amoebophila UWE25 2779976 YP_008434.1 CDS pc1435 NC_005861.1 1707925 1708692 D hypothetical protein 1707925..1708692 Candidatus Protochlamydia amoebophila UWE25 2779458 YP_008435.1 CDS pc1436 NC_005861.1 1708784 1708969 D hypothetical protein 1708784..1708969 Candidatus Protochlamydia amoebophila UWE25 2779661 YP_008436.1 CDS traN NC_005861.1 1709083 1709637 D similar to conjugative transfer protein traN precursor; conjugative transfer protein traN 1709083..1709637 Candidatus Protochlamydia amoebophila UWE25 2779975 YP_008437.1 CDS traF NC_005861.1 1709634 1710425 D similar to F pilus assembly protein traF; F pilus assembly protein traF 1709634..1710425 Candidatus Protochlamydia amoebophila UWE25 2780490 YP_008438.1 CDS traH NC_005861.1 1710422 1711780 D similar to F pilus assembly protein traH; F pilus assembly protein traH 1710422..1711780 Candidatus Protochlamydia amoebophila UWE25 2779974 YP_008439.1 CDS traG NC_005861.1 1711791 1714574 D similar to conjugative transfer protein traG; conjugative transfer protein traG 1711791..1714574 Candidatus Protochlamydia amoebophila UWE25 2779973 YP_008440.1 CDS traD NC_005861.1 1714571 1716241 D similar to conjugative transfer protein traD; conjugative transfer protein traD 1714571..1716241 Candidatus Protochlamydia amoebophila UWE25 2779683 YP_008441.1 CDS pc1442 NC_005861.1 1716302 1716655 D hypothetical protein 1716302..1716655 Candidatus Protochlamydia amoebophila UWE25 2779662 YP_008442.1 CDS pc1443 NC_005861.1 1716648 1717004 D hypothetical protein 1716648..1717004 Candidatus Protochlamydia amoebophila UWE25 2779663 YP_008443.1 CDS pc1444 NC_005861.1 1717137 1717400 D hypothetical protein 1717137..1717400 Candidatus Protochlamydia amoebophila UWE25 2780288 YP_008444.1 CDS pc1445 NC_005861.1 1717579 1717860 D hypothetical protein 1717579..1717860 Candidatus Protochlamydia amoebophila UWE25 2780289 YP_008445.1 CDS pc1446 NC_005861.1 1718022 1718702 D hypothetical protein 1718022..1718702 Candidatus Protochlamydia amoebophila UWE25 2780290 YP_008446.1 CDS pc1447 NC_005861.1 1718994 1719326 D hypothetical protein 1718994..1719326 Candidatus Protochlamydia amoebophila UWE25 2779930 YP_008447.1 CDS pc1448 NC_005861.1 1719350 1720123 D hypothetical protein 1719350..1720123 Candidatus Protochlamydia amoebophila UWE25 2779931 YP_008448.1 CDS pc1449 NC_005861.1 1720498 1722591 R hypothetical protein complement(1720498..1722591) Candidatus Protochlamydia amoebophila UWE25 2779932 YP_008449.1 CDS pc1450 NC_005861.1 1722785 1722979 R hypothetical protein complement(1722785..1722979) Candidatus Protochlamydia amoebophila UWE25 2779933 YP_008450.1 CDS pc1451 NC_005861.1 1723169 1723504 R hypothetical protein complement(1723169..1723504) Candidatus Protochlamydia amoebophila UWE25 2781386 YP_008451.1 CDS pc1452 NC_005861.1 1723987 1725021 D hypothetical protein 1723987..1725021 Candidatus Protochlamydia amoebophila UWE25 2781387 YP_008452.1 CDS pc1453 NC_005861.1 1725568 1725891 D hypothetical protein 1725568..1725891 Candidatus Protochlamydia amoebophila UWE25 2781388 YP_008453.1 CDS pc1454 NC_005861.1 1726124 1726315 D hypothetical protein 1726124..1726315 Candidatus Protochlamydia amoebophila UWE25 2780054 YP_008454.1 CDS pc1455 NC_005861.1 1726283 1731883 R hypothetical protein complement(1726283..1731883) Candidatus Protochlamydia amoebophila UWE25 2780055 YP_008455.1 CDS doc NC_005861.1 1732622 1732999 R strongly similar to doc (death on cure) protein of bacteriophage P1; doc (death on cure) protein of bacteriophage P1 complement(1732622..1732999) Candidatus Protochlamydia amoebophila UWE25 2781119 YP_008456.1 CDS pc1457 NC_005861.1 1732996 1733226 R hypothetical protein complement(1732996..1733226) Candidatus Protochlamydia amoebophila UWE25 2780056 YP_008457.1 CDS pc1458 NC_005861.1 1733583 1733768 R hypothetical protein complement(1733583..1733768) Candidatus Protochlamydia amoebophila UWE25 2781241 YP_008458.1 CDS pc1459 NC_005861.1 1734037 1734762 R hypothetical protein complement(1734037..1734762) Candidatus Protochlamydia amoebophila UWE25 2781242 YP_008459.1 CDS pc1460 NC_005861.1 1734915 1735115 R hypothetical protein complement(1734915..1735115) Candidatus Protochlamydia amoebophila UWE25 2781243 YP_008460.1 CDS pc1461 NC_005861.1 1735745 1736065 R hypothetical protein complement(1735745..1736065) Candidatus Protochlamydia amoebophila UWE25 2781244 YP_008461.1 CDS pc1462 NC_005861.1 1736478 1739090 D hypothetical protein 1736478..1739090 Candidatus Protochlamydia amoebophila UWE25 2781372 YP_008462.1 CDS pc1463 NC_005861.1 1739087 1739275 R hypothetical protein complement(1739087..1739275) Candidatus Protochlamydia amoebophila UWE25 2781373 YP_008463.1 CDS pc1464 NC_005861.1 1739816 1740037 D hypothetical protein 1739816..1740037 Candidatus Protochlamydia amoebophila UWE25 2779920 YP_008464.1 CDS pc1465 NC_005861.1 1740371 1741198 R hypothetical protein complement(1740371..1741198) Candidatus Protochlamydia amoebophila UWE25 2779921 YP_008465.1 CDS pc1466 NC_005861.1 1741400 1742194 R hypothetical protein complement(1741400..1742194) Candidatus Protochlamydia amoebophila UWE25 2779922 YP_008466.1 CDS pc1467 NC_005861.1 1742079 1744181 R hypothetical protein complement(1742079..1744181) Candidatus Protochlamydia amoebophila UWE25 2781202 YP_008467.1 CDS pc1468 NC_005861.1 1744634 1745023 D hypothetical protein 1744634..1745023 Candidatus Protochlamydia amoebophila UWE25 2781203 YP_008468.1 CDS tnpR NC_005861.1 1745398 1745955 D strongly similar to resolvase; resolvase 1745398..1745955 Candidatus Protochlamydia amoebophila UWE25 2780328 YP_008469.1 CDS tnpA NC_005861.1 1745807 1746337 D strongly similar to transposase, partial length; transposase, partial length 1745807..1746337 Candidatus Protochlamydia amoebophila UWE25 2780387 YP_008470.1 CDS tnpA NC_005861.1 1746372 1746692 D strongly similar to transposase, partial length; transposase, partial length 1746372..1746692 Candidatus Protochlamydia amoebophila UWE25 2780327 YP_008471.1 CDS pc1472 NC_005861.1 1746893 1747138 D hypothetical protein 1746893..1747138 Candidatus Protochlamydia amoebophila UWE25 2781204 YP_008472.1 CDS doc NC_005861.1 1747135 1747512 D strongly similar to doc (death on cure) protein of bacteriophage P1; doc (death on cure) protein of bacteriophage P1 1747135..1747512 Candidatus Protochlamydia amoebophila UWE25 2781120 YP_008473.1 CDS pc1474 NC_005861.1 1747618 1747809 D hypothetical protein 1747618..1747809 Candidatus Protochlamydia amoebophila UWE25 2781205 YP_008474.1 CDS gspD NC_005861.1 1748552 1751413 D similar to component D of type II secretion pathway; component D of type II secretion pathway 1748552..1751413 Candidatus Protochlamydia amoebophila UWE25 2779610 YP_008475.1 CDS pc1476 NC_005861.1 1751410 1752378 D hypothetical protein 1751410..1752378 Candidatus Protochlamydia amoebophila UWE25 2781199 YP_008476.1 CDS pc1477 NC_005861.1 1752380 1752760 D hypothetical protein 1752380..1752760 Candidatus Protochlamydia amoebophila UWE25 2781200 YP_008477.1 CDS hvsT1 NC_005861.1 1753302 1755224 R similar to sulfate transport protein; sulfate transport protein complement(1753302..1755224) Candidatus Protochlamydia amoebophila UWE25 2779692 YP_008478.1 CDS pc1479 NC_005861.1 1755396 1755593 D hypothetical protein 1755396..1755593 Candidatus Protochlamydia amoebophila UWE25 2781201 YP_008479.1 CDS pc1480 NC_005861.1 1755590 1757053 D hypothetical protein 1755590..1757053 Candidatus Protochlamydia amoebophila UWE25 2780865 YP_008480.1 CDS pc1481 NC_005861.1 1757066 1757980 D hypothetical protein 1757066..1757980 Candidatus Protochlamydia amoebophila UWE25 2780866 YP_008481.1 CDS pc1482 NC_005861.1 1757981 1758181 D hypothetical protein 1757981..1758181 Candidatus Protochlamydia amoebophila UWE25 2780867 YP_008482.1 CDS pc1483 NC_005861.1 1758163 1759191 D hypothetical protein 1758163..1759191 Candidatus Protochlamydia amoebophila UWE25 2781337 YP_008483.1 CDS pc1484 NC_005861.1 1759218 1762988 R hypothetical protein complement(1759218..1762988) Candidatus Protochlamydia amoebophila UWE25 2781338 YP_008484.1 CDS dnaK NC_005861.1 1763179 1766016 R similar to heat shock protein 70, dnaK; molecular chaperone DnaK complement(1763179..1766016) Candidatus Protochlamydia amoebophila UWE25 2779829 YP_008485.1 CDS ald NC_005861.1 1766062 1767174 R strongly similar to alanine dehydrogenase; alanine dehydrogenase complement(1766062..1767174) Candidatus Protochlamydia amoebophila UWE25 2781143 YP_008486.1 CDS smc NC_005861.1 1767206 1770745 R similar to chromosome segregation SMC protein; chromosome segregation SMC protein complement(1767206..1770745) Candidatus Protochlamydia amoebophila UWE25 2781208 YP_008487.2 CDS serS NC_005861.1 1770921 1772201 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1770921..1772201 Candidatus Protochlamydia amoebophila UWE25 2780035 YP_008488.1 CDS pc1489 NC_005861.1 1772902 1773855 D hypothetical protein 1772902..1773855 Candidatus Protochlamydia amoebophila UWE25 2781339 YP_008489.1 CDS pc1490 NC_005861.1 1773972 1775276 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 1773972..1775276 Candidatus Protochlamydia amoebophila UWE25 2781331 YP_008490.1 CDS pc1491 NC_005861.1 1775335 1776555 R hypothetical protein complement(1775335..1776555) Candidatus Protochlamydia amoebophila UWE25 2781332 YP_008491.1 CDS pc1492 NC_005861.1 1777019 1777897 D hypothetical protein 1777019..1777897 Candidatus Protochlamydia amoebophila UWE25 2781333 YP_008492.1 CDS pc1493 NC_005861.1 1778088 1778297 D hypothetical protein 1778088..1778297 Candidatus Protochlamydia amoebophila UWE25 2781327 YP_008493.1 CDS pc1494 NC_005861.1 1778322 1778507 D hypothetical protein 1778322..1778507 Candidatus Protochlamydia amoebophila UWE25 2781328 YP_008494.1 CDS pc1495 NC_005861.1 1778935 1780614 D hypothetical protein 1778935..1780614 Candidatus Protochlamydia amoebophila UWE25 2781329 YP_008495.1 CDS gdhB NC_005861.1 1781194 1784268 D similar to eucaryotic NAD-specific glutamate dehydrogenase; eucaryotic NAD-specific glutamate dehydrogenase 1781194..1784268 Candidatus Protochlamydia amoebophila UWE25 2780944 YP_008496.1 CDS hrcA NC_005861.1 1784377 1785534 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1784377..1785534 Candidatus Protochlamydia amoebophila UWE25 2780652 YP_008497.1 CDS grpE NC_005861.1 1785572 1786207 D strongly similar to heat shock protein GrpE; heat shock protein GrpE 1785572..1786207 Candidatus Protochlamydia amoebophila UWE25 2780420 YP_008498.1 CDS dnaK NC_005861.1 1786223 1788187 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1786223..1788187 Candidatus Protochlamydia amoebophila UWE25 2780431 YP_008499.1 CDS pc1500 NC_005861.1 1788344 1789045 D hypothetical protein 1788344..1789045 Candidatus Protochlamydia amoebophila UWE25 2781330 YP_008500.1 CDS pc1501 NC_005861.1 1789140 1789943 R hypothetical protein complement(1789140..1789943) Candidatus Protochlamydia amoebophila UWE25 2779734 YP_008501.1 CDS oppA NC_005861.1 1790142 1791725 D strongly similar to oligo/dipeptide-binding protein oppA; oligo/dipeptide-binding protein oppA 1790142..1791725 Candidatus Protochlamydia amoebophila UWE25 2779868 YP_008502.1 CDS oppB NC_005861.1 1791734 1792669 D strongly similar to oligo/dipeptide ABC transporter (permease) oppB; oligo/dipeptide ABC transporter permease oppB 1791734..1792669 Candidatus Protochlamydia amoebophila UWE25 2779958 YP_008503.1 CDS oppC NC_005861.1 1792666 1793568 D strongly similar to oligo/dipeptide ABC transporter (permease) oppC; oligo/dipeptide ABC transporter permease oppC 1792666..1793568 Candidatus Protochlamydia amoebophila UWE25 2779747 YP_008504.1 CDS oppD NC_005861.1 1793577 1794563 D strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppD; oligo/dipeptide ABC transporter, ATP-binding protein oppD 1793577..1794563 Candidatus Protochlamydia amoebophila UWE25 2779749 YP_008505.1 CDS dppF NC_005861.1 1794553 1795497 D strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppF; oligo/dipeptide ABC transporter, ATP-binding protein oppF 1794553..1795497 Candidatus Protochlamydia amoebophila UWE25 2780923 YP_008506.1 CDS pc1507 NC_005861.1 1796322 1798193 D hypothetical protein 1796322..1798193 Candidatus Protochlamydia amoebophila UWE25 2779735 YP_008507.1 CDS pc1508 NC_005861.1 1798603 1800576 D hypothetical protein 1798603..1800576 Candidatus Protochlamydia amoebophila UWE25 2779736 YP_008508.1 CDS pc1509 NC_005861.1 1800863 1801159 D hypothetical protein 1800863..1801159 Candidatus Protochlamydia amoebophila UWE25 2780776 YP_008509.1 CDS pc1510 NC_005861.1 1801892 1803904 D hypothetical protein 1801892..1803904 Candidatus Protochlamydia amoebophila UWE25 2780777 YP_008510.1 CDS clpC NC_005861.1 1805005 1807548 R strongly similar to endopeptidase ATP-binding chain clpC; endopeptidase ATP-binding chain clpC complement(1805005..1807548) Candidatus Protochlamydia amoebophila UWE25 2780283 YP_008511.1 CDS hemG NC_005861.1 1807876 1809249 R similar to protoporphyrinogen oxidase; protoporphyrinogen oxidase complement(1807876..1809249) Candidatus Protochlamydia amoebophila UWE25 2781263 YP_008512.1 CDS hemE NC_005861.1 1809242 1810336 R strongly similar to uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase complement(1809242..1810336) Candidatus Protochlamydia amoebophila UWE25 2781261 YP_008513.1 CDS tkt NC_005861.1 1810308 1812341 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(1810308..1812341) Candidatus Protochlamydia amoebophila UWE25 2780385 YP_008514.1 CDS pc1515 NC_005861.1 1812939 1813250 D hypothetical protein 1812939..1813250 Candidatus Protochlamydia amoebophila UWE25 2780778 YP_008515.1 CDS pc1516 NC_005861.1 1814064 1816448 D hypothetical protein 1814064..1816448 Candidatus Protochlamydia amoebophila UWE25 2780559 YP_008516.1 CDS pc1517 NC_005861.1 1816476 1817690 D hypothetical protein 1816476..1817690 Candidatus Protochlamydia amoebophila UWE25 2780560 YP_008517.1 CDS pc1518 NC_005861.1 1817726 1818958 D hypothetical protein 1817726..1818958 Candidatus Protochlamydia amoebophila UWE25 2780561 YP_008518.1 CDS alaS NC_005861.1 1820003 1822639 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1820003..1822639 Candidatus Protochlamydia amoebophila UWE25 2781142 YP_008519.1 CDS pc1520 NC_005861.1 1822792 1823523 R similar to periplasmic immunogenic protein; periplasmic immunogenic protein complement(1822792..1823523) Candidatus Protochlamydia amoebophila UWE25 2779728 YP_008520.1 CDS mfd NC_005861.1 1823883 1827188 D strongly similar to transcription-repair coupling factor mfd; transcription-repair coupling factor 1823883..1827188 Candidatus Protochlamydia amoebophila UWE25 2780597 YP_008521.1 CDS pc1522 NC_005861.1 1827160 1827357 R hypothetical protein complement(1827160..1827357) Candidatus Protochlamydia amoebophila UWE25 2779729 YP_008522.1 CDS pc1523 NC_005861.1 1827501 1827752 R hypothetical protein complement(1827501..1827752) Candidatus Protochlamydia amoebophila UWE25 2779730 YP_008523.1 CDS pc1524 NC_005861.1 1828303 1829448 R hypothetical protein complement(1828303..1829448) Candidatus Protochlamydia amoebophila UWE25 2780146 YP_008524.1 CDS lcrH NC_005861.1 1829638 1830177 D similar to regulatory protein lcrH and chaperone sycD; regulatory protein lcrH and chaperone sycD 1829638..1830177 Candidatus Protochlamydia amoebophila UWE25 2781277 YP_008525.1 CDS pc1526 NC_005861.1 1830167 1831660 D hypothetical protein 1830167..1831660 Candidatus Protochlamydia amoebophila UWE25 2780147 YP_008526.1 CDS amn NC_005861.1 1831740 1832585 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(1831740..1832585) Candidatus Protochlamydia amoebophila UWE25 2780975 YP_008527.1 CDS pc1528 NC_005861.1 1832609 1832851 R hypothetical protein complement(1832609..1832851) Candidatus Protochlamydia amoebophila UWE25 2780148 YP_008528.1 CDS efp NC_005861.1 1833395 1833967 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1833395..1833967 Candidatus Protochlamydia amoebophila UWE25 2781178 YP_008529.1 CDS lysS NC_005861.1 1834013 1834915 D similar to lysyl-tRNA synthetase; lysyl-tRNA synthetase 1834013..1834915 Candidatus Protochlamydia amoebophila UWE25 2780648 YP_008530.1 CDS pc1531 NC_005861.1 1834972 1835433 R hypothetical protein complement(1834972..1835433) Candidatus Protochlamydia amoebophila UWE25 2780149 YP_008531.1 CDS pc1532 NC_005861.1 1835487 1835717 D hypothetical protein 1835487..1835717 Candidatus Protochlamydia amoebophila UWE25 2779889 YP_008532.1 CDS nqrF NC_005861.1 1835745 1837142 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(1835745..1837142) Candidatus Protochlamydia amoebophila UWE25 2779700 YP_008533.1 CDS yabJ NC_005861.1 1837384 1837773 D strongly similar to yabJ; hypothetical protein 1837384..1837773 Candidatus Protochlamydia amoebophila UWE25 2780267 YP_008534.1 CDS htpG NC_005861.1 1837801 1839648 D molecular chaperone; heat shock protein 90 1837801..1839648 Candidatus Protochlamydia amoebophila UWE25 2779690 YP_008535.1 CDS pc1536 NC_005861.1 1839659 1841023 D hypothetical protein 1839659..1841023 Candidatus Protochlamydia amoebophila UWE25 2779890 YP_008536.1 CDS pc1537 NC_005861.1 1841167 1841976 D hypothetical protein 1841167..1841976 Candidatus Protochlamydia amoebophila UWE25 2779891 YP_008537.1 CDS pc1538 NC_005861.1 1842163 1842420 D hypothetical protein 1842163..1842420 Candidatus Protochlamydia amoebophila UWE25 2780535 YP_008538.1 CDS pc1539 NC_005861.1 1842727 1842951 D hypothetical protein 1842727..1842951 Candidatus Protochlamydia amoebophila UWE25 2780536 YP_008539.1 CDS pc1540 NC_005861.1 1843181 1845751 D hypothetical protein 1843181..1845751 Candidatus Protochlamydia amoebophila UWE25 2780537 YP_008540.1 CDS pc1541 NC_005861.1 1845760 1846290 D hypothetical protein 1845760..1846290 Candidatus Protochlamydia amoebophila UWE25 2780038 YP_008541.1 CDS pc1542 NC_005861.1 1846620 1848833 D hypothetical protein 1846620..1848833 Candidatus Protochlamydia amoebophila UWE25 2780039 YP_008542.1 CDS yajC NC_005861.1 1848958 1849356 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1848958..1849356) Candidatus Protochlamydia amoebophila UWE25 2781413 YP_008543.1 CDS ygcA NC_005861.1 1849503 1850831 R similar to rRNA methyltransferse; rRNA methyltransferse complement(1849503..1850831) Candidatus Protochlamydia amoebophila UWE25 2781040 YP_008544.1 CDS hctA NC_005861.1 1851015 1851410 R strongly similar to histone H1-like protein; histone H1-like protein complement(1851015..1851410) Candidatus Protochlamydia amoebophila UWE25 2780807 YP_008545.1 CDS pc1546 NC_005861.1 1851903 1854593 D hypothetical protein 1851903..1854593 Candidatus Protochlamydia amoebophila UWE25 2780040 YP_008546.1 CDS exbB NC_005861.1 1854520 1855245 D similar to biopolymer transport protein exbB; biopolymer transport protein exbB 1854520..1855245 Candidatus Protochlamydia amoebophila UWE25 2779939 YP_008547.1 CDS exbD NC_005861.1 1855245 1855685 D similar to biopolymer transport protein exbD; biopolymer transport protein exbD 1855245..1855685 Candidatus Protochlamydia amoebophila UWE25 2779940 YP_008548.1 CDS pc1549 NC_005861.1 1855687 1856391 D hypothetical protein 1855687..1856391 Candidatus Protochlamydia amoebophila UWE25 2780859 YP_008549.1 CDS pc1550 NC_005861.1 1856404 1856652 D hypothetical protein 1856404..1856652 Candidatus Protochlamydia amoebophila UWE25 2780860 YP_008550.1 CDS pc1551 NC_005861.1 1856807 1857094 D hypothetical protein 1856807..1857094 Candidatus Protochlamydia amoebophila UWE25 2780861 YP_008551.1 CDS pc1552 NC_005861.1 1857261 1857554 R hypothetical protein complement(1857261..1857554) Candidatus Protochlamydia amoebophila UWE25 2781022 YP_008552.1 CDS pc1553 NC_005861.1 1859673 1859873 D hypothetical protein 1859673..1859873 Candidatus Protochlamydia amoebophila UWE25 2781023 YP_008553.1 CDS pc1554 NC_005861.1 1860232 1861068 D hypothetical protein 1860232..1861068 Candidatus Protochlamydia amoebophila UWE25 2781024 YP_008554.1 CDS pc1555 NC_005861.1 1861286 1861846 D hypothetical protein 1861286..1861846 Candidatus Protochlamydia amoebophila UWE25 2781025 YP_008555.1 CDS pc1556 NC_005861.1 1861968 1864838 R hypothetical protein complement(1861968..1864838) Candidatus Protochlamydia amoebophila UWE25 2781010 YP_008556.1 CDS hemH NC_005861.1 1865025 1866068 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1865025..1866068) Candidatus Protochlamydia amoebophila UWE25 2781264 YP_008557.1 CDS clpB NC_005861.1 1866089 1868032 R similar to heat shock protein ClpB; heat shock protein ClpB complement(1866089..1868032) Candidatus Protochlamydia amoebophila UWE25 2780282 YP_008558.1 CDS deaD NC_005861.1 1868321 1869868 R similar to ATP-dependent RNA helicase; ATP-dependent RNA helicase complement(1868321..1869868) Candidatus Protochlamydia amoebophila UWE25 2780316 YP_008559.1 CDS pc1560 NC_005861.1 1870645 1870920 R hypothetical protein complement(1870645..1870920) Candidatus Protochlamydia amoebophila UWE25 2781011 YP_008560.1 CDS pc1561 NC_005861.1 1871435 1871770 D hypothetical protein 1871435..1871770 Candidatus Protochlamydia amoebophila UWE25 2781012 YP_008561.1 CDS pc1562 NC_005861.1 1872305 1872637 R hypothetical protein complement(1872305..1872637) Candidatus Protochlamydia amoebophila UWE25 2780368 YP_008562.1 CDS pc1563 NC_005861.1 1872634 1873776 R hypothetical protein complement(1872634..1873776) Candidatus Protochlamydia amoebophila UWE25 2780369 YP_008563.1 CDS pc1564 NC_005861.1 1874074 1874259 R hypothetical protein complement(1874074..1874259) Candidatus Protochlamydia amoebophila UWE25 2780370 YP_008564.1 CDS pc1565 NC_005861.1 1874808 1878239 D hypothetical protein 1874808..1878239 Candidatus Protochlamydia amoebophila UWE25 2780313 YP_008565.1 CDS pc1566 NC_005861.1 1878743 1879477 R hypothetical protein complement(1878743..1879477) Candidatus Protochlamydia amoebophila UWE25 2780314 YP_008566.1 CDS pc1567 NC_005861.1 1879467 1880144 R hypothetical protein complement(1879467..1880144) Candidatus Protochlamydia amoebophila UWE25 2780315 YP_008567.1 CDS pc1568 NC_005861.1 1880123 1881916 R hypothetical protein complement(1880123..1881916) Candidatus Protochlamydia amoebophila UWE25 2779731 YP_008568.1 CDS rimL NC_005861.1 1882035 1882607 R similar to ribosomal-protein-serine acetyltransferase; ribosomal-protein-serine acetyltransferase complement(1882035..1882607) Candidatus Protochlamydia amoebophila UWE25 2780953 YP_008569.1 CDS pc1570 NC_005861.1 1882604 1885366 R hypothetical protein complement(1882604..1885366) Candidatus Protochlamydia amoebophila UWE25 2779732 YP_008570.1 CDS rnr NC_005861.1 1885398 1886966 D similar to ribonuclease R; ribonuclease R 1885398..1886966 Candidatus Protochlamydia amoebophila UWE25 2780481 YP_008571.1 CDS pc1572 NC_005861.1 1887047 1888912 D similar to tylosin resistance protein; tylosin resistance protein 1887047..1888912 Candidatus Protochlamydia amoebophila UWE25 2779733 YP_008572.1 CDS rf-3 NC_005861.1 1888990 1890591 D strongly similar to peptide chain release factor 3; peptide chain release factor 3 1888990..1890591 Candidatus Protochlamydia amoebophila UWE25 2779592 YP_008573.1 CDS pc1574 NC_005861.1 1890612 1891160 R hypothetical protein complement(1890612..1891160) Candidatus Protochlamydia amoebophila UWE25 2780767 YP_008574.1 CDS pc1575 NC_005861.1 1891281 1891670 R hypothetical protein complement(1891281..1891670) Candidatus Protochlamydia amoebophila UWE25 2780768 YP_008575.1 CDS suhB NC_005861.1 1892195 1892992 D similar to inositol-1(or 4)-monophosphatase; inositol-1(or 4)-monophosphatase 1892195..1892992 Candidatus Protochlamydia amoebophila UWE25 2779429 YP_008576.1 CDS pc1577 NC_005861.1 1893085 1894290 D hypothetical protein 1893085..1894290 Candidatus Protochlamydia amoebophila UWE25 2780769 YP_008577.1 CDS pc1578 NC_005861.1 1894313 1895104 D similar to blue fluorescent protein; blue fluorescent protein 1894313..1895104 Candidatus Protochlamydia amoebophila UWE25 2780770 YP_008578.1 CDS yohI NC_005861.1 1895503 1896483 R similar to protein involved in tRNA-dihydrouridine synthesis; protein involved in tRNA-dihydrouridine synthesis complement(1895503..1896483) Candidatus Protochlamydia amoebophila UWE25 2779886 YP_008579.1 CDS pc1580 NC_005861.1 1896546 1897781 R hypothetical protein complement(1896546..1897781) Candidatus Protochlamydia amoebophila UWE25 2779511 YP_008580.1 CDS pc1581 NC_005861.1 1897953 1898858 D hypothetical protein 1897953..1898858 Candidatus Protochlamydia amoebophila UWE25 2779512 YP_008581.1 CDS pc1582 NC_005861.1 1898943 1899770 R hypothetical protein complement(1898943..1899770) Candidatus Protochlamydia amoebophila UWE25 2779513 YP_008582.1 CDS pc1583 NC_005861.1 1900144 1900920 D hypothetical protein 1900144..1900920 Candidatus Protochlamydia amoebophila UWE25 2780814 YP_008583.1 CDS pc1584 NC_005861.1 1901204 1901389 R hypothetical protein complement(1901204..1901389) Candidatus Protochlamydia amoebophila UWE25 2780815 YP_008584.1 CDS pc1585 NC_005861.1 1901604 1901861 R hypothetical protein complement(1901604..1901861) Candidatus Protochlamydia amoebophila UWE25 2780816 YP_008585.1 CDS pc1586 NC_005861.1 1902558 1902815 D hypothetical protein 1902558..1902815 Candidatus Protochlamydia amoebophila UWE25 2780853 YP_008586.1 CDS hldE NC_005861.1 1903266 1904627 R similar to bifunctional protein involved in LPS core biosynthesis, hdlE; bifunctional protein involved in LPS core biosynthesis, hdlE complement(1903266..1904627) Candidatus Protochlamydia amoebophila UWE25 2780170 YP_008587.1 CDS hldD NC_005861.1 1904621 1905607 R similar to ADP-D-beta-D-heptose epimerase, hldD; ADP-D-beta-heptose epimerase, hldD complement(1904621..1905607) Candidatus Protochlamydia amoebophila UWE25 2780169 YP_008588.1 CDS pc1589 NC_005861.1 1905729 1906595 R strongly similar to isopentenyl monophosphate kinase (IPK); isopentenyl monophosphate kinase (IPK) complement(1905729..1906595) Candidatus Protochlamydia amoebophila UWE25 2780854 YP_008589.1 CDS rplI NC_005861.1 1906645 1907130 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1906645..1907130) Candidatus Protochlamydia amoebophila UWE25 2780855 YP_008590.1 CDS rpsR NC_005861.1 1907154 1907414 R strongly similar to ribosomal protein S18; 30S ribosomal protein S18 complement(1907154..1907414) Candidatus Protochlamydia amoebophila UWE25 2780856 YP_008591.1 CDS rpsF NC_005861.1 1907426 1907770 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1907426..1907770) Candidatus Protochlamydia amoebophila UWE25 2780382 YP_008592.1 CDS spoVc NC_005861.1 1907781 1908377 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1907781..1908377) Candidatus Protochlamydia amoebophila UWE25 2780132 YP_008593.1 CDS ctc NC_005861.1 1908473 1909027 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(1908473..1909027) Candidatus Protochlamydia amoebophila UWE25 2779647 YP_008594.1 CDS prsA NC_005861.1 1909193 1910134 R strongly similar to phosphoribosyl pyrophosphate synthetase (PRPP); phosphoribosyl pyrophosphate synthetase (PRPP) complement(1909193..1910134) Candidatus Protochlamydia amoebophila UWE25 2779790 YP_008595.1 CDS glgA NC_005861.1 1910591 1912093 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1910591..1912093 Candidatus Protochlamydia amoebophila UWE25 2780897 YP_008596.1 CDS pgsA NC_005861.1 1912196 1912813 D similar to phosphatidylglycerophosphate synthase (PGP synthase); phosphatidylglycerophosphate synthase (PGP synthase) 1912196..1912813 Candidatus Protochlamydia amoebophila UWE25 2779547 YP_008597.1 CDS dagA NC_005861.1 1913051 1914412 R similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent complement(1913051..1914412) Candidatus Protochlamydia amoebophila UWE25 2781269 YP_008598.1 CDS pc1599 NC_005861.1 1914481 1915017 R hypothetical protein complement(1914481..1915017) Candidatus Protochlamydia amoebophila UWE25 2779462 YP_008599.1 CDS pc1600 NC_005861.1 1915185 1915808 D hypothetical protein 1915185..1915808 Candidatus Protochlamydia amoebophila UWE25 2779463 YP_008600.1 CDS pcrA NC_005861.1 1915865 1917871 R strongly similar to ATP-dependent DNA helicase, mutU; ATP-dependent DNA helicase, mutU complement(1915865..1917871) Candidatus Protochlamydia amoebophila UWE25 2779817 YP_008601.1 CDS pc1602 NC_005861.1 1918217 1920091 D hypothetical protein 1918217..1920091 Candidatus Protochlamydia amoebophila UWE25 2779464 YP_008602.1 CDS pc1603 NC_005861.1 1920235 1920564 R hypothetical protein complement(1920235..1920564) Candidatus Protochlamydia amoebophila UWE25 2779483 YP_008603.1 CDS rpmH NC_005861.1 1920591 1920728 R strongly similar to 50S ribosomal protein L34; 50S ribosomal protein L34 complement(1920591..1920728) Candidatus Protochlamydia amoebophila UWE25 2781056 YP_008604.1 CDS rpmJ NC_005861.1 1921054 1921191 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 1921054..1921191 Candidatus Protochlamydia amoebophila UWE25 2781451 YP_008605.1 CDS rpsN NC_005861.1 1921202 1921507 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1921202..1921507 Candidatus Protochlamydia amoebophila UWE25 2779484 YP_008606.1 CDS pc1607 NC_005861.1 1921655 1922131 R hypothetical protein complement(1921655..1922131) Candidatus Protochlamydia amoebophila UWE25 2779485 YP_008607.1 CDS pc1608 NC_005861.1 1922564 1923043 D hypothetical protein 1922564..1923043 Candidatus Protochlamydia amoebophila UWE25 2779486 YP_008608.1 CDS pc1609 NC_005861.1 1923033 1923560 D hypothetical protein 1923033..1923560 Candidatus Protochlamydia amoebophila UWE25 2780594 YP_008609.1 CDS pc1610 NC_005861.1 1923823 1924029 R hypothetical protein complement(1923823..1924029) Candidatus Protochlamydia amoebophila UWE25 2780595 YP_008610.1 CDS pc1611 NC_005861.1 1924358 1929142 R hypothetical protein complement(1924358..1929142) Candidatus Protochlamydia amoebophila UWE25 2780596 YP_008611.1 CDS pc1612 NC_005861.1 1929220 1929426 D hypothetical protein 1929220..1929426 Candidatus Protochlamydia amoebophila UWE25 2780705 YP_008612.1 CDS pc1613 NC_005861.1 1929430 1929642 D hypothetical protein 1929430..1929642 Candidatus Protochlamydia amoebophila UWE25 2780706 YP_008613.1 CDS pc1614 NC_005861.1 1930051 1931562 D hypothetical protein 1930051..1931562 Candidatus Protochlamydia amoebophila UWE25 2780707 YP_008614.1 CDS pc1615 NC_005861.1 1932011 1932223 D hypothetical protein 1932011..1932223 Candidatus Protochlamydia amoebophila UWE25 2780390 YP_008615.1 CDS pc1616 NC_005861.1 1932755 1935196 D hypothetical protein 1932755..1935196 Candidatus Protochlamydia amoebophila UWE25 2780391 YP_008616.1 CDS pc1617 NC_005861.1 1935766 1935981 D hypothetical protein 1935766..1935981 Candidatus Protochlamydia amoebophila UWE25 2780392 YP_008617.1 CDS pc1618 NC_005861.1 1936373 1939153 R hypothetical protein complement(1936373..1939153) Candidatus Protochlamydia amoebophila UWE25 2780571 YP_008618.1 CDS pc1619 NC_005861.1 1939697 1939948 D hypothetical protein 1939697..1939948 Candidatus Protochlamydia amoebophila UWE25 2780572 YP_008619.1 CDS pc1620 NC_005861.1 1940867 1941415 D hypothetical protein 1940867..1941415 Candidatus Protochlamydia amoebophila UWE25 2780573 YP_008620.1 CDS pc1621 NC_005861.1 1941388 1941969 R hypothetical protein complement(1941388..1941969) Candidatus Protochlamydia amoebophila UWE25 2781124 YP_008621.1 CDS pc1622 NC_005861.1 1942484 1942792 D hypothetical protein 1942484..1942792 Candidatus Protochlamydia amoebophila UWE25 2781125 YP_008622.1 CDS nusB NC_005861.1 1943116 1943580 D similar to transcription termination factor, nusB; transcription termination factor, nusB 1943116..1943580 Candidatus Protochlamydia amoebophila UWE25 2781355 YP_008623.1 CDS murB NC_005861.1 1943549 1944448 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1943549..1944448 Candidatus Protochlamydia amoebophila UWE25 2781163 YP_008624.1 CDS pc1625 NC_005861.1 1944452 1945294 D hypothetical protein 1944452..1945294 Candidatus Protochlamydia amoebophila UWE25 2781126 YP_008625.1 CDS folC NC_005861.1 1945299 1946531 D similar to folylpolyglutamate synthase; folylpolyglutamate synthase 1945299..1946531 Candidatus Protochlamydia amoebophila UWE25 2781341 YP_008626.1 CDS pc1627 NC_005861.1 1946741 1947202 D hypothetical protein 1946741..1947202 Candidatus Protochlamydia amoebophila UWE25 2781127 YP_008627.1 CDS pc1628 NC_005861.1 1947297 1947893 R hypothetical protein complement(1947297..1947893) Candidatus Protochlamydia amoebophila UWE25 2779516 YP_008628.1 CDS cydB NC_005861.1 1948144 1949076 R similar to cytochrome bd-I oxidase subunit II; cytochrome bd-I oxidase subunit II complement(1948144..1949076) Candidatus Protochlamydia amoebophila UWE25 2779523 YP_008629.1 CDS cydA NC_005861.1 1949159 1950556 R similar to cytochrome bd-I oxidase subunit I; cytochrome bd-I oxidase subunit I complement(1949159..1950556) Candidatus Protochlamydia amoebophila UWE25 2779522 YP_008630.1 CDS pc1631 NC_005861.1 1950589 1950777 R hypothetical protein complement(1950589..1950777) Candidatus Protochlamydia amoebophila UWE25 2779517 YP_008631.1 CDS folP NC_005861.1 1950787 1951566 D similar to dihydropteroate synthase; dihydropteroate synthase 1950787..1951566 Candidatus Protochlamydia amoebophila UWE25 2781376 YP_008632.1 CDS pc1633 NC_005861.1 1951626 1952963 D hypothetical protein 1951626..1952963 Candidatus Protochlamydia amoebophila UWE25 2779518 YP_008633.1 CDS pc1634 NC_005861.1 1952953 1953675 D hypothetical protein 1952953..1953675 Candidatus Protochlamydia amoebophila UWE25 2780511 YP_008634.1 CDS pc1635 NC_005861.1 1953622 1956414 R hypothetical protein complement(1953622..1956414) Candidatus Protochlamydia amoebophila UWE25 2780512 YP_008635.1 CDS pyk NC_005861.1 1956411 1958207 R strongly similar to pyruvate kinase; pyruvate kinase complement(1956411..1958207) Candidatus Protochlamydia amoebophila UWE25 2780270 YP_008636.1 CDS pc1637 NC_005861.1 1958934 1959386 D hypothetical protein 1958934..1959386 Candidatus Protochlamydia amoebophila UWE25 2780513 YP_008637.1 CDS pc1638 NC_005861.1 1959722 1960000 R hypothetical protein complement(1959722..1960000) Candidatus Protochlamydia amoebophila UWE25 2779480 YP_008638.1 CDS pc1639 NC_005861.1 1960060 1964661 R hypothetical protein complement(1960060..1964661) Candidatus Protochlamydia amoebophila UWE25 2779481 YP_008639.1 CDS pc1640 NC_005861.1 1965252 1965542 D hypothetical protein 1965252..1965542 Candidatus Protochlamydia amoebophila UWE25 2779482 YP_008640.1 CDS uvrA NC_005861.1 1965994 1971696 D strongly similar to excinuclease ABC subunit A, uvrA; excinuclease ABC subunit A 1965994..1971696 Candidatus Protochlamydia amoebophila UWE25 2780839 YP_008641.1 CDS pc1642 NC_005861.1 1971962 1973137 D hypothetical protein 1971962..1973137 Candidatus Protochlamydia amoebophila UWE25 2780198 YP_008642.1 CDS pc1643 NC_005861.1 1973177 1973878 R hypothetical protein complement(1973177..1973878) Candidatus Protochlamydia amoebophila UWE25 2780199 YP_008643.1 CDS pc1644 NC_005861.1 1974348 1974689 D hypothetical protein 1974348..1974689 Candidatus Protochlamydia amoebophila UWE25 2780200 YP_008644.1 CDS pc1645 NC_005861.1 1975141 1978089 D hypothetical protein 1975141..1978089 Candidatus Protochlamydia amoebophila UWE25 2780931 YP_008645.1 CDS mutT NC_005861.1 1978076 1978639 D similar to mutT protein; mutT protein 1978076..1978639 Candidatus Protochlamydia amoebophila UWE25 2779583 YP_008646.1 CDS pc1647 NC_005861.1 1979254 1979496 R hypothetical protein complement(1979254..1979496) Candidatus Protochlamydia amoebophila UWE25 2780932 YP_008647.1 CDS pc1648 NC_005861.1 1979686 1979874 D hypothetical protein 1979686..1979874 Candidatus Protochlamydia amoebophila UWE25 2780933 YP_008648.1 CDS pc1649 NC_005861.1 1979980 1981545 R hypothetical protein complement(1979980..1981545) Candidatus Protochlamydia amoebophila UWE25 2780934 YP_008649.1 CDS pc1650 NC_005861.1 1982447 1982719 D hypothetical protein 1982447..1982719 Candidatus Protochlamydia amoebophila UWE25 2780779 YP_008650.1 CDS pc1651 NC_005861.1 1982943 1983281 D hypothetical protein 1982943..1983281 Candidatus Protochlamydia amoebophila UWE25 2780780 YP_008651.1 CDS pc1652 NC_005861.1 1983718 1984677 R hypothetical protein complement(1983718..1984677) Candidatus Protochlamydia amoebophila UWE25 2780781 YP_008652.1 CDS pc1653 NC_005861.1 1985382 1985594 D hypothetical protein 1985382..1985594 Candidatus Protochlamydia amoebophila UWE25 2779565 YP_008653.1 CDS valS NC_005861.1 1986552 1989401 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1986552..1989401 Candidatus Protochlamydia amoebophila UWE25 2781147 YP_008654.1 CDS pc1655 NC_005861.1 1989473 1992784 R hypothetical protein complement(1989473..1992784) Candidatus Protochlamydia amoebophila UWE25 2779566 YP_008655.1 CDS dagA NC_005861.1 1993208 1994605 R similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent complement(1993208..1994605) Candidatus Protochlamydia amoebophila UWE25 2781270 YP_008656.1 CDS dagA NC_005861.1 1994607 1995992 R similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent complement(1994607..1995992) Candidatus Protochlamydia amoebophila UWE25 2781271 YP_008657.1 CDS aroF NC_005861.1 1996454 1997545 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1996454..1997545 Candidatus Protochlamydia amoebophila UWE25 2779774 YP_008658.1 CDS pc1659 NC_005861.1 1997524 1998057 D hypothetical protein 1997524..1998057 Candidatus Protochlamydia amoebophila UWE25 2779567 YP_008659.1 CDS fumC NC_005861.1 1998054 1999445 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1998054..1999445) Candidatus Protochlamydia amoebophila UWE25 2779425 YP_008660.1 CDS pc1661 NC_005861.1 1999452 2000423 R hypothetical protein complement(1999452..2000423) Candidatus Protochlamydia amoebophila UWE25 2781152 YP_008661.1 CDS pc1662 NC_005861.1 2000642 2000824 D hypothetical protein 2000642..2000824 Candidatus Protochlamydia amoebophila UWE25 2781153 YP_008662.1 CDS menC NC_005861.1 2000914 2001852 R similar to o-succinylbenzoate synthase II, menC; o-succinylbenzoate synthase II, menC complement(2000914..2001852) Candidatus Protochlamydia amoebophila UWE25 2780906 YP_008663.1 CDS pc1664 NC_005861.1 2002626 2002958 R hypothetical protein complement(2002626..2002958) Candidatus Protochlamydia amoebophila UWE25 2781154 YP_008664.1 CDS pc1665 NC_005861.1 2003198 2003434 R hypothetical protein complement(2003198..2003434) Candidatus Protochlamydia amoebophila UWE25 2779449 YP_008665.1 CDS pc1666 NC_005861.1 2003442 2004998 R hypothetical protein complement(2003442..2004998) Candidatus Protochlamydia amoebophila UWE25 2779450 YP_008666.1 CDS atpC NC_005861.1 2005543 2005986 R similar to H+-transporting two-sector ATPase (epsilon chain, atpC); H+-transporting two-sector ATPase (epsilon chain, atpC) complement(2005543..2005986) Candidatus Protochlamydia amoebophila UWE25 2779779 YP_008667.1 CDS atpD NC_005861.1 2006004 2007464 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(2006004..2007464) Candidatus Protochlamydia amoebophila UWE25 2779826 YP_008668.1 CDS atpG NC_005861.1 2007511 2008368 R similar to H+-transporting two-sector ATPase (gamma chain, atpG); H+-transporting two-sector ATPase (gamma chain, atpG) complement(2007511..2008368) Candidatus Protochlamydia amoebophila UWE25 2779813 YP_008669.1 CDS atpA NC_005861.1 2008386 2009912 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(2008386..2009912) Candidatus Protochlamydia amoebophila UWE25 2779806 YP_008670.1 CDS atpH NC_005861.1 2009921 2010466 R similar to H+-transporting two-sector ATPase (delta chain, atpH); H+-transporting two-sector ATPase (delta chain, atpH) complement(2009921..2010466) Candidatus Protochlamydia amoebophila UWE25 2779814 YP_008671.1 CDS atpF NC_005861.1 2010463 2010945 R similar to H+-transporting two-sector ATPase (chain b, atpF); H+-transporting two-sector ATPase (chain b, atpF) complement(2010463..2010945) Candidatus Protochlamydia amoebophila UWE25 2779828 YP_008672.1 CDS atpE NC_005861.1 2010953 2011249 R strongly similar to H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE); H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE) complement(2010953..2011249) Candidatus Protochlamydia amoebophila UWE25 2779827 YP_008673.1 CDS atpB NC_005861.1 2011342 2012157 R similar to H+-transporting two-sector ATPase (chain a, atpB); H+-transporting two-sector ATPase (chain a, atpB) complement(2011342..2012157) Candidatus Protochlamydia amoebophila UWE25 2779777 YP_008674.1 CDS pc1675 NC_005861.1 2012154 2012549 R hypothetical protein complement(2012154..2012549) Candidatus Protochlamydia amoebophila UWE25 2779451 YP_008675.1 CDS ntpK NC_005861.1 2012813 2013235 R produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K complement(2012813..2013235) Candidatus Protochlamydia amoebophila UWE25 2779861 YP_008676.1 CDS ntpI NC_005861.1 2013253 2015169 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I complement(2013253..2015169) Candidatus Protochlamydia amoebophila UWE25 2779860 YP_008677.1 CDS ntpD NC_005861.1 2015162 2015809 R produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D complement(2015162..2015809) Candidatus Protochlamydia amoebophila UWE25 2780895 YP_008678.1 CDS atpB NC_005861.1 2015824 2017140 R produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B complement(2015824..2017140) Candidatus Protochlamydia amoebophila UWE25 2779778 YP_008679.1 CDS ntpA NC_005861.1 2017158 2018939 R produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A complement(2017158..2018939) Candidatus Protochlamydia amoebophila UWE25 2780894 YP_008680.1 CDS pc1681 NC_005861.1 2018941 2019732 R hypothetical protein complement(2018941..2019732) Candidatus Protochlamydia amoebophila UWE25 2779926 YP_008681.2 CDS ntpE NC_005861.1 2019734 2020360 R produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E complement(2019734..2020360) Candidatus Protochlamydia amoebophila UWE25 2779859 YP_008682.1 CDS pc1683 NC_005861.1 2020974 2021789 D hypothetical protein 2020974..2021789 Candidatus Protochlamydia amoebophila UWE25 2779927 YP_008683.1 CDS pc1684 NC_005861.1 2021813 2022109 D hypothetical protein 2021813..2022109 Candidatus Protochlamydia amoebophila UWE25 2779928 YP_008684.1 CDS pc1685 NC_005861.1 2022139 2022615 D hypothetical protein 2022139..2022615 Candidatus Protochlamydia amoebophila UWE25 2779929 YP_008685.1 CDS pc1686 NC_005861.1 2023124 2023489 D hypothetical protein 2023124..2023489 Candidatus Protochlamydia amoebophila UWE25 2780938 YP_008686.1 CDS pc1687 NC_005861.1 2023823 2024119 D hypothetical protein 2023823..2024119 Candidatus Protochlamydia amoebophila UWE25 2780939 YP_008687.1 CDS pc1688 NC_005861.1 2024120 2024947 R hypothetical protein complement(2024120..2024947) Candidatus Protochlamydia amoebophila UWE25 2780940 YP_008688.1 CDS pc1689 NC_005861.1 2025034 2026809 R hypothetical protein complement(2025034..2026809) Candidatus Protochlamydia amoebophila UWE25 2780924 YP_008689.1 CDS pc1690 NC_005861.1 2027067 2027459 D hypothetical protein 2027067..2027459 Candidatus Protochlamydia amoebophila UWE25 2780925 YP_008690.1 CDS talB NC_005861.1 2027480 2028448 D Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 2027480..2028448 Candidatus Protochlamydia amoebophila UWE25 2781130 YP_008691.1 CDS pc1692 NC_005861.1 2028678 2029973 R hypothetical protein complement(2028678..2029973) Candidatus Protochlamydia amoebophila UWE25 2780926 YP_008692.1 CDS pc1693 NC_005861.1 2029991 2030932 R hypothetical protein complement(2029991..2030932) Candidatus Protochlamydia amoebophila UWE25 2781258 YP_008693.1 CDS pc1694 NC_005861.1 2031353 2033209 R hypothetical protein complement(2031353..2033209) Candidatus Protochlamydia amoebophila UWE25 2781259 YP_008694.1 CDS rkpK NC_005861.1 2033509 2034918 D strongly similar to UDPglucose 6-dehydrogenase; udpglucose 6-dehydrogenase 2033509..2034918 Candidatus Protochlamydia amoebophila UWE25 2780015 YP_008695.1 CDS crtE NC_005861.1 2034915 2035799 D strongly similar to farnesyltranstransferase; farnesyltranstransferase 2034915..2035799 Candidatus Protochlamydia amoebophila UWE25 2779646 YP_008696.1 CDS exoY NC_005861.1 2035970 2036623 D strongly similar to exopolysaccharide production protein; exopolysaccharide production protein 2035970..2036623 Candidatus Protochlamydia amoebophila UWE25 2780633 YP_008697.1 CDS pc1698 NC_005861.1 2036712 2037230 D hypothetical protein 2036712..2037230 Candidatus Protochlamydia amoebophila UWE25 2781260 YP_008698.1 CDS pc1699 NC_005861.1 2037227 2038495 D recombination factor protein RarA 2037227..2038495 Candidatus Protochlamydia amoebophila UWE25 2779916 YP_008699.1 CDS pc1700 NC_005861.1 2038490 2038993 R hypothetical protein complement(2038490..2038993) Candidatus Protochlamydia amoebophila UWE25 2779917 YP_008700.1 CDS folD NC_005861.1 2039368 2040246 D strongly similar to bifunctional protein folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase FolD 2039368..2040246 Candidatus Protochlamydia amoebophila UWE25 2781342 YP_008701.1 CDS apbE NC_005861.1 2040243 2041316 D similar to Thiamine biosynthesis lipoprotein apbE precursor; thiamine biosynthesis lipoprotein apbE 2040243..2041316 Candidatus Protochlamydia amoebophila UWE25 2779796 YP_008702.1 CDS pc1703 NC_005861.1 2041522 2041782 R hypothetical protein complement(2041522..2041782) Candidatus Protochlamydia amoebophila UWE25 2779918 YP_008703.1 CDS pc1704 NC_005861.1 2042177 2043535 D hypothetical protein 2042177..2043535 Candidatus Protochlamydia amoebophila UWE25 2780064 YP_008704.1 CDS dnaN NC_005861.1 2043622 2044833 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2043622..2044833 Candidatus Protochlamydia amoebophila UWE25 2779830 YP_008705.1 CDS recF NC_005861.1 2044842 2045921 D similar to DNA replication and repair protein recF; DNA replication and repair protein recF 2044842..2045921 Candidatus Protochlamydia amoebophila UWE25 2781076 YP_008706.1 CDS smpB NC_005861.1 2046098 2046559 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2046098..2046559 Candidatus Protochlamydia amoebophila UWE25 2780065 YP_008707.1 CDS pc1708 NC_005861.1 2046649 2047071 D hypothetical protein 2046649..2047071 Candidatus Protochlamydia amoebophila UWE25 2780066 YP_008708.1 CDS pc1709 NC_005861.1 2047822 2048220 R hypothetical protein complement(2047822..2048220) Candidatus Protochlamydia amoebophila UWE25 2780067 YP_008709.1 CDS pc1710 NC_005861.1 2048857 2049951 D hypothetical protein 2048857..2049951 Candidatus Protochlamydia amoebophila UWE25 2780600 YP_008710.1 CDS acpS NC_005861.1 2050094 2050462 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2050094..2050462 Candidatus Protochlamydia amoebophila UWE25 2781017 YP_008711.1 CDS pc1712 NC_005861.1 2050531 2051352 R hypothetical protein complement(2050531..2051352) Candidatus Protochlamydia amoebophila UWE25 2780601 YP_008712.1 CDS trxB NC_005861.1 2051352 2052302 R strongly similar to thioredoxin-disulfide reductase 2; thioredoxin-disulfide reductase 2 complement(2051352..2052302) Candidatus Protochlamydia amoebophila UWE25 2781311 YP_008713.1 CDS pc1714 NC_005861.1 2052603 2053100 D hypothetical protein 2052603..2053100 Candidatus Protochlamydia amoebophila UWE25 2780602 YP_008714.1 CDS putP NC_005861.1 2053532 2054962 D strongly similar to sodium/proline symporter; sodium/proline symporter 2053532..2054962 Candidatus Protochlamydia amoebophila UWE25 2780269 YP_008715.1 CDS pc1716 NC_005861.1 2055402 2057195 D hypothetical protein 2055402..2057195 Candidatus Protochlamydia amoebophila UWE25 2780112 YP_008716.1 CDS acpP NC_005861.1 2057266 2057499 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2057266..2057499) Candidatus Protochlamydia amoebophila UWE25 2781016 YP_008717.1 CDS fabG NC_005861.1 2057665 2058420 R strongly similar to 3-oxoacyl-[acyl-carrier protein] reductase, fabG; 3-oxoacyl-ACP reductase complement(2057665..2058420) Candidatus Protochlamydia amoebophila UWE25 2780156 YP_008718.1 CDS fabD NC_005861.1 2058490 2059479 R similar to malonyl CoA-acyl carrier protein transacylase, fabD; malonyl CoA-acyl carrier protein transacylase, fabD complement(2058490..2059479) Candidatus Protochlamydia amoebophila UWE25 2780634 YP_008719.1 CDS fabH NC_005861.1 2059443 2060441 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(2059443..2060441) Candidatus Protochlamydia amoebophila UWE25 2780157 YP_008720.1 CDS pc1721 NC_005861.1 2060561 2060788 R hypothetical protein complement(2060561..2060788) Candidatus Protochlamydia amoebophila UWE25 2780113 YP_008721.1 CDS pc1722 NC_005861.1 2061096 2061332 D hypothetical protein 2061096..2061332 Candidatus Protochlamydia amoebophila UWE25 2780114 YP_008722.1 CDS pc1723 NC_005861.1 2061490 2061678 D hypothetical protein 2061490..2061678 Candidatus Protochlamydia amoebophila UWE25 2779649 YP_008723.1 CDS recR NC_005861.1 2061749 2062345 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2061749..2062345 Candidatus Protochlamydia amoebophila UWE25 2779495 YP_008724.1 CDS pc1725 NC_005861.1 2062406 2062636 R hypothetical protein complement(2062406..2062636) Candidatus Protochlamydia amoebophila UWE25 2779650 YP_008725.1 CDS omp85 NC_005861.1 2063055 2065502 D similar to outer membrane protein Omp85; outer membrane protein Omp85 2063055..2065502 Candidatus Protochlamydia amoebophila UWE25 2779866 YP_008726.1 CDS pc1727 NC_005861.1 2065598 2066170 D hypothetical protein 2065598..2066170 Candidatus Protochlamydia amoebophila UWE25 2779651 YP_008727.1 CDS lpxD NC_005861.1 2066322 2067371 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2066322..2067371 Candidatus Protochlamydia amoebophila UWE25 2780009 YP_008728.1 CDS ptc1 NC_005861.1 2067457 2068917 R similar to phosphoprotein phosphatase; phosphoprotein phosphatase complement(2067457..2068917) Candidatus Protochlamydia amoebophila UWE25 2779664 YP_008729.1 CDS pc1730 NC_005861.1 2069274 2070047 R hypothetical protein complement(2069274..2070047) Candidatus Protochlamydia amoebophila UWE25 2779652 YP_008730.1 CDS pdhC NC_005861.1 2070586 2071887 R Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(2070586..2071887) Candidatus Protochlamydia amoebophila UWE25 2780360 YP_008731.1 CDS pdhB NC_005861.1 2071900 2072892 R strongly similar to pyruvate dehydrogenase (lipoamide), E1 component, beta chain; pyruvate dehydrogenase (lipoamide), E1 component, beta chain complement(2071900..2072892) Candidatus Protochlamydia amoebophila UWE25 2780359 YP_008732.1 CDS pdhA NC_005861.1 2072904 2073932 R similar to pyruvate dehydrogenase (lipoamide), E1 component, alpha chain; pyruvate dehydrogenase (lipoamide), E1 component, alpha chain complement(2072904..2073932) Candidatus Protochlamydia amoebophila UWE25 2779818 YP_008733.1 CDS aaaT NC_005861.1 2074246 2075505 R similar to neutral amino acid (glutamate) transporter; neutral amino acid (glutamate) transporter complement(2074246..2075505) Candidatus Protochlamydia amoebophila UWE25 2779536 YP_008734.1 CDS pc1735 NC_005861.1 2075684 2076316 R hypothetical protein complement(2075684..2076316) Candidatus Protochlamydia amoebophila UWE25 2779725 YP_008735.1 CDS pc1736 NC_005861.1 2076378 2076851 R hypothetical protein complement(2076378..2076851) Candidatus Protochlamydia amoebophila UWE25 2779726 YP_008736.1 CDS pc1737 NC_005861.1 2076864 2077892 R hypothetical protein complement(2076864..2077892) Candidatus Protochlamydia amoebophila UWE25 2779727 YP_008737.1 CDS pc1738 NC_005861.1 2077934 2078413 R hypothetical protein complement(2077934..2078413) Candidatus Protochlamydia amoebophila UWE25 2780629 YP_008738.1 CDS pc1739 NC_005861.1 2078410 2080641 R hypothetical protein complement(2078410..2080641) Candidatus Protochlamydia amoebophila UWE25 2780630 YP_008739.1 CDS pc1740 NC_005861.1 2081062 2081484 R hypothetical protein complement(2081062..2081484) Candidatus Protochlamydia amoebophila UWE25 2780631 YP_008740.1 CDS pc1741 NC_005861.1 2081884 2082486 R hypothetical protein complement(2081884..2082486) Candidatus Protochlamydia amoebophila UWE25 2780021 YP_008741.1 CDS pc1742 NC_005861.1 2083563 2084408 D hypothetical protein 2083563..2084408 Candidatus Protochlamydia amoebophila UWE25 2780022 YP_008742.1 CDS pc1743 NC_005861.1 2084520 2084849 D hypothetical protein 2084520..2084849 Candidatus Protochlamydia amoebophila UWE25 2780023 YP_008743.1 CDS pc1744 NC_005861.1 2085204 2085479 R hypothetical protein complement(2085204..2085479) Candidatus Protochlamydia amoebophila UWE25 2780275 YP_008744.1 CDS pc1745 NC_005861.1 2085620 2086453 R hypothetical protein complement(2085620..2086453) Candidatus Protochlamydia amoebophila UWE25 2780276 YP_008745.1 CDS pc1746 NC_005861.1 2086764 2086985 D hypothetical protein 2086764..2086985 Candidatus Protochlamydia amoebophila UWE25 2780277 YP_008746.1 CDS pc1747 NC_005861.1 2087430 2087612 D hypothetical protein 2087430..2087612 Candidatus Protochlamydia amoebophila UWE25 2780278 YP_008747.1 CDS hemL NC_005861.1 2087714 2089012 R strongly similar to glutamate-1-semialdehyde 2,1-aminomutase; glutamate-1-semialdehyde 2,1-aminomutase complement(2087714..2089012) Candidatus Protochlamydia amoebophila UWE25 2781344 YP_008748.1 CDS pc1749 NC_005861.1 2089174 2091126 D hypothetical protein 2089174..2091126 Candidatus Protochlamydia amoebophila UWE25 2780976 YP_008749.1 CDS pc1750 NC_005861.1 2091138 2095004 D hypothetical protein 2091138..2095004 Candidatus Protochlamydia amoebophila UWE25 2780977 YP_008750.1 CDS pc1751 NC_005861.1 2095285 2095647 D hypothetical protein 2095285..2095647 Candidatus Protochlamydia amoebophila UWE25 2780978 YP_008751.1 CDS pc1752 NC_005861.1 2096082 2096804 D hypothetical protein 2096082..2096804 Candidatus Protochlamydia amoebophila UWE25 2780970 YP_008752.1 CDS pc1753 NC_005861.1 2096919 2097632 D hypothetical protein 2096919..2097632 Candidatus Protochlamydia amoebophila UWE25 2780971 YP_008753.1 CDS pc1754 NC_005861.1 2097638 2098867 D hypothetical protein 2097638..2098867 Candidatus Protochlamydia amoebophila UWE25 2780972 YP_008754.1 CDS pc1755 NC_005861.1 2098887 2099456 D hypothetical protein 2098887..2099456 Candidatus Protochlamydia amoebophila UWE25 2781105 YP_008755.1 CDS rpsI NC_005861.1 2099720 2100109 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2099720..2100109) Candidatus Protochlamydia amoebophila UWE25 2781247 YP_008756.1 CDS rplM NC_005861.1 2100127 2100558 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2100127..2100558) Candidatus Protochlamydia amoebophila UWE25 2780016 YP_008757.1 CDS miaB NC_005861.1 2101062 2102414 D strongly similar to 2-methylthioadenine synthetase; 2-methylthioadenine synthetase 2101062..2102414 Candidatus Protochlamydia amoebophila UWE25 2781015 YP_008758.1 CDS sodC NC_005861.1 2102482 2103099 R similar to Superoxide dismutase (Cu-Zn); superoxide dismutase (Cu-Zn) complement(2102482..2103099) Candidatus Protochlamydia amoebophila UWE25 2781210 YP_008759.1 CDS ligA NC_005861.1 2103293 2105290 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2103293..2105290) Candidatus Protochlamydia amoebophila UWE25 2779561 YP_008760.1 CDS glgB NC_005861.1 2105546 2107729 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(2105546..2107729) Candidatus Protochlamydia amoebophila UWE25 2780898 YP_008761.1 CDS pc1762 NC_005861.1 2107774 2108832 R hypothetical protein complement(2107774..2108832) Candidatus Protochlamydia amoebophila UWE25 2781106 YP_008762.1 CDS yqeV NC_005861.1 2108901 2110205 R similar to 2-methylthioadenine synthetase; 2-methylthioadenine synthetase complement(2108901..2110205) Candidatus Protochlamydia amoebophila UWE25 2779887 YP_008763.1 CDS pc1764 NC_005861.1 2110399 2117607 R hypothetical protein complement(2110399..2117607) Candidatus Protochlamydia amoebophila UWE25 2781107 YP_008764.1 CDS radC NC_005861.1 2117803 2118498 R similar to DNA repair protein radC; DNA repair protein radC complement(2117803..2118498) Candidatus Protochlamydia amoebophila UWE25 2781393 YP_008765.1 CDS pc1766 NC_005861.1 2118506 2119840 R hypothetical protein complement(2118506..2119840) Candidatus Protochlamydia amoebophila UWE25 2781108 YP_008766.1 CDS phnP NC_005861.1 2119844 2120560 R similar to phnP protein; phnP protein complement(2119844..2120560) Candidatus Protochlamydia amoebophila UWE25 2779550 YP_008767.1 CDS pc1768 NC_005861.1 2120633 2121187 R hypothetical protein complement(2120633..2121187) Candidatus Protochlamydia amoebophila UWE25 2780102 YP_008768.1 CDS pc1769 NC_005861.1 2121400 2122404 D hypothetical protein 2121400..2122404 Candidatus Protochlamydia amoebophila UWE25 2780103 YP_008769.1 CDS pc1770 NC_005861.1 2122460 2123209 R hypothetical protein complement(2122460..2123209) Candidatus Protochlamydia amoebophila UWE25 2780104 YP_008770.1 CDS gltA NC_005861.1 2123290 2124450 R similar to citrate (si)-synthase; type I citrate synthase complement(2123290..2124450) Candidatus Protochlamydia amoebophila UWE25 2781426 YP_008771.1 CDS mdh NC_005861.1 2124504 2125496 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(2124504..2125496) Candidatus Protochlamydia amoebophila UWE25 2779853 YP_008772.1 CDS pc1773 NC_005861.1 2125717 2126610 D hypothetical protein 2125717..2126610 Candidatus Protochlamydia amoebophila UWE25 2780374 YP_008773.1 CDS pc1774 NC_005861.1 2126735 2127556 R hypothetical protein complement(2126735..2127556) Candidatus Protochlamydia amoebophila UWE25 2780375 YP_008774.1 CDS pc1775 NC_005861.1 2132904 2133227 D hypothetical protein 2132904..2133227 Candidatus Protochlamydia amoebophila UWE25 2780376 YP_008775.1 CDS pc1776 NC_005861.1 2133230 2133439 D hypothetical protein 2133230..2133439 Candidatus Protochlamydia amoebophila UWE25 2780150 YP_008776.1 CDS pc1777 NC_005861.1 2133440 2133685 D hypothetical protein 2133440..2133685 Candidatus Protochlamydia amoebophila UWE25 2780151 YP_008777.1 CDS pc1778 NC_005861.1 2134357 2135349 R hypothetical protein complement(2134357..2135349) Candidatus Protochlamydia amoebophila UWE25 2780152 YP_008778.1 CDS pc1779 NC_005861.1 2135658 2136014 R hypothetical protein complement(2135658..2136014) Candidatus Protochlamydia amoebophila UWE25 2780153 YP_008779.1 CDS pc1780 NC_005861.1 2136080 2136328 D hypothetical protein 2136080..2136328 Candidatus Protochlamydia amoebophila UWE25 2779571 YP_008780.1 CDS pc1781 NC_005861.1 2136361 2136813 D hypothetical protein 2136361..2136813 Candidatus Protochlamydia amoebophila UWE25 2779572 YP_008781.1 CDS gutQ NC_005861.1 2136836 2137795 R similar to Gut Q protein; Gut Q protein complement(2136836..2137795) Candidatus Protochlamydia amoebophila UWE25 2780172 YP_008782.1 CDS icd NC_005861.1 2137886 2139337 D catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 2137886..2139337 Candidatus Protochlamydia amoebophila UWE25 2779942 YP_008783.1 CDS pc1784 NC_005861.1 2139381 2140184 R hypothetical protein complement(2139381..2140184) Candidatus Protochlamydia amoebophila UWE25 2779573 YP_008784.1 CDS gltT NC_005861.1 2140226 2141455 R similar to proton/sodium-glutamate symporter; proton/sodium-glutamate symporter complement(2140226..2141455) Candidatus Protochlamydia amoebophila UWE25 2781427 YP_008785.1 CDS lpxK NC_005861.1 2141506 2142612 R similar to tetraacyldisaccharide (lipid A) 4'-kinase; tetraacyldisaccharide (lipid A) 4'-kinase complement(2141506..2142612) Candidatus Protochlamydia amoebophila UWE25 2780010 YP_008786.1 CDS gmhA NC_005861.1 2142690 2143334 R strongly similar to phosphoheptose isomerase; phosphoheptose isomerase complement(2142690..2143334) Candidatus Protochlamydia amoebophila UWE25 2781424 YP_008787.1 CDS pc1788 NC_005861.1 2143439 2144032 D hypothetical protein 2143439..2144032 Candidatus Protochlamydia amoebophila UWE25 2779397 YP_008788.1 CDS pc1789 NC_005861.1 2144168 2144437 D hypothetical protein 2144168..2144437 Candidatus Protochlamydia amoebophila UWE25 2779398 YP_008789.1 CDS pc1790 NC_005861.1 2144705 2145937 D hypothetical protein 2144705..2145937 Candidatus Protochlamydia amoebophila UWE25 2779399 YP_008790.1 CDS rlu NC_005861.1 2146000 2146659 R similar to 23S rRNA pseudouridine synthase; 23S rRNA pseudouridine synthase complement(2146000..2146659) Candidatus Protochlamydia amoebophila UWE25 2780181 YP_008791.1 CDS rlmB NC_005861.1 2146661 2147458 R similar to rRNA methylase; rRNA methylase complement(2146661..2147458) Candidatus Protochlamydia amoebophila UWE25 2780017 YP_008792.1 CDS pc1793 NC_005861.1 2147469 2148332 R hypothetical protein complement(2147469..2148332) Candidatus Protochlamydia amoebophila UWE25 2781057 YP_008793.1 CDS ppx NC_005861.1 2148700 2149728 D similar to exopolyphosphatase; exopolyphosphatase 2148700..2149728 Candidatus Protochlamydia amoebophila UWE25 2779437 YP_008794.1 CDS pc1795 NC_005861.1 2149879 2150169 R hypothetical protein complement(2149879..2150169) Candidatus Protochlamydia amoebophila UWE25 2781058 YP_008795.1 CDS pc1796 NC_005861.1 2150141 2150842 R hypothetical protein complement(2150141..2150842) Candidatus Protochlamydia amoebophila UWE25 2781059 YP_008796.1 CDS lspA NC_005861.1 2150845 2151372 R similar to signal peptidase II (prolipoprotein signal peptidase); signal peptidase II (prolipoprotein signal peptidase) complement(2150845..2151372) Candidatus Protochlamydia amoebophila UWE25 2780011 YP_008797.1 CDS dksA NC_005861.1 2151389 2151754 R similar to dnaK suppressor; molecular chaperone DnaK complement(2151389..2151754) Candidatus Protochlamydia amoebophila UWE25 2780086 YP_008798.1 CDS nrdR NC_005861.1 2151804 2152292 R transcriptional regulator NrdR complement(2151804..2152292) Candidatus Protochlamydia amoebophila UWE25 2781060 YP_008799.1 CDS ycfB NC_005861.1 2152728 2153858 D strongly similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ Antisuppressor; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ antisuppressor 2152728..2153858 Candidatus Protochlamydia amoebophila UWE25 2781414 YP_008800.1 CDS fur NC_005861.1 2154184 2154576 R similar to ferric uptake regulator protein; ferric uptake regulator protein complement(2154184..2154576) Candidatus Protochlamydia amoebophila UWE25 2779426 YP_008801.1 CDS pc1802 NC_005861.1 2154674 2155492 D hypothetical protein 2154674..2155492 Candidatus Protochlamydia amoebophila UWE25 2780604 YP_008802.1 CDS pc1803 NC_005861.1 2155562 2156632 R hypothetical protein complement(2155562..2156632) Candidatus Protochlamydia amoebophila UWE25 2780605 YP_008803.1 CDS shsP NC_005861.1 2156942 2157388 D similar to small heat shock protein; small heat shock protein 2156942..2157388 Candidatus Protochlamydia amoebophila UWE25 2780036 YP_008804.1 CDS znuA NC_005861.1 2157646 2158503 D similar to zinc ABC transporter membrane protein; zinc ABC transporter membrane protein 2157646..2158503 Candidatus Protochlamydia amoebophila UWE25 2781356 YP_008805.1 CDS znuC NC_005861.1 2158513 2159250 D strongly similar to zinc ABC transporter ATP-binding protein; zinc ABC transporter ATP-binding protein 2158513..2159250 Candidatus Protochlamydia amoebophila UWE25 2781358 YP_008806.1 CDS znuB NC_005861.1 2159114 2160169 D similar to zinc ABC transporter membrane protein; zinc ABC transporter membrane protein 2159114..2160169 Candidatus Protochlamydia amoebophila UWE25 2781357 YP_008807.1 CDS pc1808 NC_005861.1 2160420 2160773 R hypothetical protein complement(2160420..2160773) Candidatus Protochlamydia amoebophila UWE25 2780606 YP_008808.1 CDS ndh NC_005861.1 2161486 2162730 R similar to NADH2 dehydrogenase; NADH2 dehydrogenase complement(2161486..2162730) Candidatus Protochlamydia amoebophila UWE25 2780677 YP_008809.1 CDS dnaB NC_005861.1 2162991 2164436 D unwinds double stranded DNA; replicative DNA helicase 2162991..2164436 Candidatus Protochlamydia amoebophila UWE25 2780109 YP_008810.1 CDS pc1811 NC_005861.1 2164774 2165235 D hypothetical protein 2164774..2165235 Candidatus Protochlamydia amoebophila UWE25 2779993 YP_008811.1 CDS pc1812 NC_005861.1 2165644 2166735 R hypothetical protein complement(2165644..2166735) Candidatus Protochlamydia amoebophila UWE25 2779994 YP_008812.1 CDS pc1813 NC_005861.1 2167542 2168333 R hypothetical protein complement(2167542..2168333) Candidatus Protochlamydia amoebophila UWE25 2779995 YP_008813.1 CDS pc1814 NC_005861.1 2168645 2169298 D hypothetical protein 2168645..2169298 Candidatus Protochlamydia amoebophila UWE25 2781306 YP_008814.1 CDS fbp NC_005861.1 2169300 2170715 R similar to fibronectin/fibrinogen binding protein; fibronectin/fibrinogen binding protein complement(2169300..2170715) Candidatus Protochlamydia amoebophila UWE25 2780879 YP_008815.1 CDS pc1816 NC_005861.1 2170767 2172965 R hypothetical protein complement(2170767..2172965) Candidatus Protochlamydia amoebophila UWE25 2781307 YP_008816.1 CDS pc1817 NC_005861.1 2173103 2173363 R hypothetical protein complement(2173103..2173363) Candidatus Protochlamydia amoebophila UWE25 2781308 YP_008817.1 CDS pc1818 NC_005861.1 2173491 2173673 R hypothetical protein complement(2173491..2173673) Candidatus Protochlamydia amoebophila UWE25 2781309 YP_008818.1 CDS pc1819 NC_005861.1 2173907 2174185 R hypothetical protein complement(2173907..2174185) Candidatus Protochlamydia amoebophila UWE25 2779953 YP_008819.1 CDS dinP NC_005861.1 2174317 2175369 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2174317..2175369) Candidatus Protochlamydia amoebophila UWE25 2780085 YP_008820.1 CDS pc1821 NC_005861.1 2175546 2175983 R hypothetical protein complement(2175546..2175983) Candidatus Protochlamydia amoebophila UWE25 2779954 YP_008821.1 CDS panF NC_005861.1 2176233 2177600 R similar to sodium/pantothenate symporter (pantothenate permease); sodium/pantothenate symporter (pantothenate permease) complement(2176233..2177600) Candidatus Protochlamydia amoebophila UWE25 2780793 YP_008822.1 CDS pc1823 NC_005861.1 2178044 2178613 R hypothetical protein complement(2178044..2178613) Candidatus Protochlamydia amoebophila UWE25 2779955 YP_008823.1 CDS pc1824 NC_005861.1 2178812 2179630 R hypothetical protein complement(2178812..2179630) Candidatus Protochlamydia amoebophila UWE25 2781085 YP_008824.1 CDS nagA NC_005861.1 2179640 2181292 R similar to beta-N-acetylglucosaminidase; beta-N-acetylglucosaminidase complement(2179640..2181292) Candidatus Protochlamydia amoebophila UWE25 2779541 YP_008825.1 CDS pc1826 NC_005861.1 2181442 2182122 D hypothetical protein 2181442..2182122 Candidatus Protochlamydia amoebophila UWE25 2781086 YP_008826.1 CDS pc1827 NC_005861.1 2182157 2183365 R hypothetical protein complement(2182157..2183365) Candidatus Protochlamydia amoebophila UWE25 2781087 YP_008827.1 CDS pc1828 NC_005861.1 2183561 2184496 R hypothetical protein complement(2183561..2184496) Candidatus Protochlamydia amoebophila UWE25 2779392 YP_008828.1 CDS pc1829 NC_005861.1 2184720 2185190 D hypothetical protein 2184720..2185190 Candidatus Protochlamydia amoebophila UWE25 2779393 YP_008829.1 CDS pc1830 NC_005861.1 2185198 2186052 D hypothetical protein 2185198..2186052 Candidatus Protochlamydia amoebophila UWE25 2779394 YP_008830.1 CDS pc1831 NC_005861.1 2186049 2186726 D hypothetical protein 2186049..2186726 Candidatus Protochlamydia amoebophila UWE25 2779395 YP_008831.1 CDS pc1832 NC_005861.1 2187133 2188503 D hypothetical protein 2187133..2188503 Candidatus Protochlamydia amoebophila UWE25 2781173 YP_008832.1 CDS pc1833 NC_005861.1 2189234 2191720 D hypothetical protein 2189234..2191720 Candidatus Protochlamydia amoebophila UWE25 2781174 YP_008833.1 CDS alkA NC_005861.1 2191751 2193181 R similar to DNA-3-methyladenine glycosidase II; DNA-3-methyladenine glycosidase II complement(2191751..2193181) Candidatus Protochlamydia amoebophila UWE25 2779960 YP_008834.1 CDS ada NC_005861.1 2193352 2193873 D similar to methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase 2193352..2193873 Candidatus Protochlamydia amoebophila UWE25 2780452 YP_008835.1 CDS hctB NC_005861.1 2193932 2194567 R similar to histone H1-like protein; histone H1-like protein complement(2193932..2194567) Candidatus Protochlamydia amoebophila UWE25 2780808 YP_008836.1 CDS pc1837 NC_005861.1 2194835 2195251 R hypothetical protein complement(2194835..2195251) Candidatus Protochlamydia amoebophila UWE25 2781175 YP_008837.1 CDS lplA NC_005861.1 2195435 2196136 R similar to lipoate-protein ligase; lipoate-protein ligase complement(2195435..2196136) Candidatus Protochlamydia amoebophila UWE25 2781440 YP_008838.1 CDS gidA NC_005861.1 2196161 2198038 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2196161..2198038) Candidatus Protochlamydia amoebophila UWE25 2780896 YP_008839.1 CDS pc1840 NC_005861.1 2198992 2200545 R hypothetical protein complement(2198992..2200545) Candidatus Protochlamydia amoebophila UWE25 2779543 YP_008840.1 CDS sdhB NC_005861.1 2200648 2201421 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2200648..2201421) Candidatus Protochlamydia amoebophila UWE25 2780018 YP_008841.1 CDS sdhA NC_005861.1 2201436 2203319 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2201436..2203319) Candidatus Protochlamydia amoebophila UWE25 2779742 YP_008842.1 CDS sdhC NC_005861.1 2203334 2204296 R similar to succinate dehydrogenase cytochrome b558; succinate dehydrogenase cytochrome b558 complement(2203334..2204296) Candidatus Protochlamydia amoebophila UWE25 2780019 YP_008843.1 CDS tatD NC_005861.1 2204540 2205337 R similar to deoxyribonuclease TatD; deoxyribonuclease TatD complement(2204540..2205337) Candidatus Protochlamydia amoebophila UWE25 2781401 YP_008844.1 CDS dsbD NC_005861.1 2205325 2207568 R similar to thiol-disulfide interchange protein; thiol-disulfide interchange protein complement(2205325..2207568) Candidatus Protochlamydia amoebophila UWE25 2780696 YP_008845.1 CDS pc1846 NC_005861.1 2207561 2207758 D hypothetical protein 2207561..2207758 Candidatus Protochlamydia amoebophila UWE25 2779544 YP_008846.1 CDS tolQ NC_005861.1 2207959 2208711 D similar to TolQ protein; TolQ protein 2207959..2208711 Candidatus Protochlamydia amoebophila UWE25 2781093 YP_008847.1 CDS tolR NC_005861.1 2208726 2209154 D similar to TolR protein; TolR protein 2208726..2209154 Candidatus Protochlamydia amoebophila UWE25 2781094 YP_008848.1 CDS tolA NC_005861.1 2209164 2210231 D similar to tolA protein of Tol-Pal system; tolA protein of Tol-Pal system 2209164..2210231 Candidatus Protochlamydia amoebophila UWE25 2780329 YP_008849.1 CDS tolB NC_005861.1 2210293 2211702 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2210293..2211702 Candidatus Protochlamydia amoebophila UWE25 2781091 YP_008850.1 CDS pal NC_005861.1 2212004 2212744 D strongly similar to peptidoglycan-associated lipoprotein precursor (pal); peptidoglycan-associated lipoprotein (pal) 2212004..2212744 Candidatus Protochlamydia amoebophila UWE25 2780792 YP_008851.1 CDS pc1852 NC_005861.1 2212734 2213453 D hypothetical protein 2212734..2213453 Candidatus Protochlamydia amoebophila UWE25 2779545 YP_008852.1 CDS murI NC_005861.1 2213529 2214278 D strongly similar to glutamate racemase; glutamate racemase 2213529..2214278 Candidatus Protochlamydia amoebophila UWE25 2780522 YP_008853.1 CDS pc1854 NC_005861.1 2214626 2214976 R hypothetical protein complement(2214626..2214976) Candidatus Protochlamydia amoebophila UWE25 2779546 YP_008854.1 CDS phoB NC_005861.1 2215139 2215828 R similar to two-component response regulator phoP; two-component response regulator phoP complement(2215139..2215828) Candidatus Protochlamydia amoebophila UWE25 2779835 YP_008855.1 CDS pc1856 NC_005861.1 2216282 2217214 D hypothetical protein 2216282..2217214 Candidatus Protochlamydia amoebophila UWE25 2779944 YP_008856.1 CDS pc1857 NC_005861.1 2217298 2218329 D hypothetical protein 2217298..2218329 Candidatus Protochlamydia amoebophila UWE25 2779945 YP_008857.1 CDS pc1858 NC_005861.1 2218377 2219648 D hypothetical protein 2218377..2219648 Candidatus Protochlamydia amoebophila UWE25 2779946 YP_008858.1 CDS pc1859 NC_005861.1 2219638 2220234 D hypothetical protein 2219638..2220234 Candidatus Protochlamydia amoebophila UWE25 2780514 YP_008859.1 CDS pc1860 NC_005861.1 2220564 2221541 D hypothetical protein 2220564..2221541 Candidatus Protochlamydia amoebophila UWE25 2780515 YP_008860.1 CDS pc1861 NC_005861.1 2221636 2222838 R hypothetical protein complement(2221636..2222838) Candidatus Protochlamydia amoebophila UWE25 2780516 YP_008861.1 CDS pc1862 NC_005861.1 2223109 2223603 D hypothetical protein 2223109..2223603 Candidatus Protochlamydia amoebophila UWE25 2780176 YP_008862.1 CDS pc1863 NC_005861.1 2223637 2224077 D hypothetical protein 2223637..2224077 Candidatus Protochlamydia amoebophila UWE25 2780177 YP_008863.1 CDS pc1864 NC_005861.1 2224106 2224738 D hypothetical protein 2224106..2224738 Candidatus Protochlamydia amoebophila UWE25 2780178 YP_008864.1 CDS pc1865 NC_005861.1 2224854 2225714 D hypothetical protein 2224854..2225714 Candidatus Protochlamydia amoebophila UWE25 2780179 YP_008865.1 CDS pc1866 NC_005861.1 2225721 2226617 D hypothetical protein 2225721..2226617 Candidatus Protochlamydia amoebophila UWE25 2780850 YP_008866.1 CDS pc1867 NC_005861.1 2226625 2227272 R hypothetical protein complement(2226625..2227272) Candidatus Protochlamydia amoebophila UWE25 2780851 YP_008867.1 CDS pc1868 NC_005861.1 2227444 2228214 D hypothetical protein 2227444..2228214 Candidatus Protochlamydia amoebophila UWE25 2780852 YP_008868.1 CDS pc1869 NC_005861.1 2228252 2228899 D similar to phosphoglycerate mutase; phosphoglycerate mutase 2228252..2228899 Candidatus Protochlamydia amoebophila UWE25 2780300 YP_008869.1 CDS pc1870 NC_005861.1 2229760 2231310 D hypothetical protein 2229760..2231310 Candidatus Protochlamydia amoebophila UWE25 2780301 YP_008870.1 CDS pc1871 NC_005861.1 2231394 2231885 D hypothetical protein 2231394..2231885 Candidatus Protochlamydia amoebophila UWE25 2780302 YP_008871.1 CDS pc1872 NC_005861.1 2232454 2232693 D hypothetical protein 2232454..2232693 Candidatus Protochlamydia amoebophila UWE25 2780303 YP_008872.1 CDS pc1873 NC_005861.1 2233042 2234136 R hypothetical protein complement(2233042..2234136) Candidatus Protochlamydia amoebophila UWE25 2780119 YP_008873.1 CDS pc1874 NC_005861.1 2234147 2235136 R similar to arginine kinase; ATP:guanido phosphotransferase complement(2234147..2235136) Candidatus Protochlamydia amoebophila UWE25 2780120 YP_008874.1 CDS pc1875 NC_005861.1 2235207 2235785 R hypothetical protein complement(2235207..2235785) Candidatus Protochlamydia amoebophila UWE25 2780121 YP_008875.1 CDS rrf NC_005861.1 2236436 2236987 R similar to ribosome recycling factor (ribosome releasing factor); ribosome recycling factor (ribosome releasing factor) complement(2236436..2236987) Candidatus Protochlamydia amoebophila UWE25 2781135 YP_008876.1 CDS pyrH NC_005861.1 2236999 2237754 R strongly similar to uridylate kinase; uridylate kinase complement(2236999..2237754) Candidatus Protochlamydia amoebophila UWE25 2781391 YP_008877.1 CDS pc1878 NC_005861.1 2238592 2239479 R similar to procollagen-lysine 5-dioxygenase; procollagen-lysine 5-dioxygenase complement(2238592..2239479) Candidatus Protochlamydia amoebophila UWE25 2780211 YP_008878.1 CDS pc1879 NC_005861.1 2239542 2240627 R hypothetical protein complement(2239542..2240627) Candidatus Protochlamydia amoebophila UWE25 2780212 YP_008879.1 CDS pc1880 NC_005861.1 2240785 2241783 D similar to X-Pro dipeptidase; X-Pro dipeptidase 2240785..2241783 Candidatus Protochlamydia amoebophila UWE25 2780213 YP_008880.1 CDS phoR NC_005861.1 2241946 2243715 D similar to two-component sensor histidine kinase phoR; two-component sensor histidine kinase phoR 2241946..2243715 Candidatus Protochlamydia amoebophila UWE25 2779837 YP_008881.1 CDS pc1882 NC_005861.1 2243779 2244774 D hypothetical protein 2243779..2244774 Candidatus Protochlamydia amoebophila UWE25 2780245 YP_008882.1 CDS pc1883 NC_005861.1 2244771 2245649 D hypothetical protein 2244771..2245649 Candidatus Protochlamydia amoebophila UWE25 2780246 YP_008883.1 CDS pc1884 NC_005861.1 2245646 2246740 D hypothetical protein 2245646..2246740 Candidatus Protochlamydia amoebophila UWE25 2780247 YP_008884.1 CDS pc1885 NC_005861.1 2246988 2247641 R hypothetical protein complement(2246988..2247641) Candidatus Protochlamydia amoebophila UWE25 2780248 YP_008885.1 CDS pc1886 NC_005861.1 2247817 2248926 R hypothetical protein complement(2247817..2248926) Candidatus Protochlamydia amoebophila UWE25 2780223 YP_008886.1 CDS pc1887 NC_005861.1 2248936 2250063 R hypothetical protein complement(2248936..2250063) Candidatus Protochlamydia amoebophila UWE25 2780224 YP_008887.1 CDS pc1888 NC_005861.1 2250060 2251790 R hypothetical protein complement(2250060..2251790) Candidatus Protochlamydia amoebophila UWE25 2780225 YP_008888.1 CDS pc1889 NC_005861.1 2251787 2252635 R hypothetical protein complement(2251787..2252635) Candidatus Protochlamydia amoebophila UWE25 2779844 YP_008889.1 CDS pc1890 NC_005861.1 2252757 2253728 R hypothetical protein complement(2252757..2253728) Candidatus Protochlamydia amoebophila UWE25 2779845 YP_008890.1 CDS pc1891 NC_005861.1 2253784 2254668 R hypothetical protein complement(2253784..2254668) Candidatus Protochlamydia amoebophila UWE25 2779846 YP_008891.1 CDS pc1892 NC_005861.1 2254613 2255410 R hypothetical protein complement(2254613..2255410) Candidatus Protochlamydia amoebophila UWE25 2779847 YP_008892.1 CDS pc1893 NC_005861.1 2255379 2255945 R hypothetical protein complement(2255379..2255945) Candidatus Protochlamydia amoebophila UWE25 2781447 YP_008893.1 CDS pc1894 NC_005861.1 2255905 2256492 R hypothetical protein complement(2255905..2256492) Candidatus Protochlamydia amoebophila UWE25 2781448 YP_008894.1 CDS pc1895 NC_005861.1 2256493 2256897 R hypothetical protein complement(2256493..2256897) Candidatus Protochlamydia amoebophila UWE25 2781449 YP_008895.1 CDS gspF NC_005861.1 2256916 2258103 R similar to protein of the general secretion pathway; protein of the general secretion pathway complement(2256916..2258103) Candidatus Protochlamydia amoebophila UWE25 2779914 YP_008896.1 CDS gspE NC_005861.1 2258106 2259737 R strongly similar to protein of the general secretion pathway; general secretion pathway protein complement(2258106..2259737) Candidatus Protochlamydia amoebophila UWE25 2779913 YP_008897.1 CDS gspD NC_005861.1 2259724 2262213 R similar to protein of the general secretion pathway; protein of the general secretion pathway complement(2259724..2262213) Candidatus Protochlamydia amoebophila UWE25 2779611 YP_008898.1 CDS pc1899 NC_005861.1 2262376 2263794 R hypothetical protein complement(2262376..2263794) Candidatus Protochlamydia amoebophila UWE25 2781279 YP_008899.1 CDS pc1900 NC_005861.1 2264109 2264633 D hypothetical protein 2264109..2264633 Candidatus Protochlamydia amoebophila UWE25 2781280 YP_008900.1 CDS rpoN NC_005861.1 2264714 2266192 R similar to RNA polymerase sigma-54 factor (sigma-N); RNA polymerase sigma-54 factor (sigma-N) complement(2264714..2266192) Candidatus Protochlamydia amoebophila UWE25 2780142 YP_008901.1 CDS pc1902 NC_005861.1 2267094 2267333 R hypothetical protein complement(2267094..2267333) Candidatus Protochlamydia amoebophila UWE25 2781281 YP_008902.1 CDS pc1903 NC_005861.1 2267377 2267805 R hypothetical protein complement(2267377..2267805) Candidatus Protochlamydia amoebophila UWE25 2780880 YP_008903.1 CDS pc1904 NC_005861.1 2267806 2268066 R hypothetical protein complement(2267806..2268066) Candidatus Protochlamydia amoebophila UWE25 2780881 YP_008904.1 CDS pc1905 NC_005861.1 2268054 2268260 D hypothetical protein 2268054..2268260 Candidatus Protochlamydia amoebophila UWE25 2780882 YP_008905.1 CDS pc1906 NC_005861.1 2268698 2269183 R hypothetical protein complement(2268698..2269183) Candidatus Protochlamydia amoebophila UWE25 2780883 YP_008906.1 CDS pc1907 NC_005861.1 2269528 2269797 D hypothetical protein 2269528..2269797 Candidatus Protochlamydia amoebophila UWE25 2780415 YP_008907.1 CDS pc1908 NC_005861.1 2269804 2269995 D hypothetical protein 2269804..2269995 Candidatus Protochlamydia amoebophila UWE25 2780416 YP_008908.1 CDS pc1909 NC_005861.1 2270490 2271284 D hypothetical protein 2270490..2271284 Candidatus Protochlamydia amoebophila UWE25 2780417 YP_008909.1 CDS pc1910 NC_005861.1 2271281 2272237 D hypothetical protein 2271281..2272237 Candidatus Protochlamydia amoebophila UWE25 2780889 YP_008910.1 CDS pc1911 NC_005861.1 2272463 2272684 D hypothetical protein 2272463..2272684 Candidatus Protochlamydia amoebophila UWE25 2780890 YP_008911.1 CDS pc1912 NC_005861.1 2273476 2273742 R hypothetical protein complement(2273476..2273742) Candidatus Protochlamydia amoebophila UWE25 2780891 YP_008912.1 CDS pc1913 NC_005861.1 2273735 2274001 R hypothetical protein complement(2273735..2274001) Candidatus Protochlamydia amoebophila UWE25 2780892 YP_008913.1 CDS pc1914 NC_005861.1 2274539 2276125 D hypothetical protein 2274539..2276125 Candidatus Protochlamydia amoebophila UWE25 2779923 YP_008914.1 CDS pc1915 NC_005861.1 2276615 2278666 D hypothetical protein 2276615..2278666 Candidatus Protochlamydia amoebophila UWE25 2779924 YP_008915.1 CDS pc1916 NC_005861.1 2279612 2280544 D hypothetical protein 2279612..2280544 Candidatus Protochlamydia amoebophila UWE25 2779925 YP_008916.1 CDS pc1917 NC_005861.1 2280713 2280961 R hypothetical protein complement(2280713..2280961) Candidatus Protochlamydia amoebophila UWE25 2780320 YP_008917.1 CDS pc1918 NC_005861.1 2281953 2283611 R hypothetical protein complement(2281953..2283611) Candidatus Protochlamydia amoebophila UWE25 2780321 YP_008918.1 CDS pc1919 NC_005861.1 2284437 2284730 R hypothetical protein complement(2284437..2284730) Candidatus Protochlamydia amoebophila UWE25 2780322 YP_008919.1 CDS pc1920 NC_005861.1 2284703 2286256 R hypothetical protein complement(2284703..2286256) Candidatus Protochlamydia amoebophila UWE25 2780323 YP_008920.1 CDS pc1921 NC_005861.1 2286661 2286951 R hypothetical protein complement(2286661..2286951) Candidatus Protochlamydia amoebophila UWE25 2781347 YP_008921.1 CDS pc1922 NC_005861.1 2287548 2287862 D hypothetical protein 2287548..2287862 Candidatus Protochlamydia amoebophila UWE25 2781348 YP_008922.1 CDS pc1923 NC_005861.1 2287831 2288109 D hypothetical protein 2287831..2288109 Candidatus Protochlamydia amoebophila UWE25 2781349 YP_008923.1 CDS pc1924 NC_005861.1 2289623 2291149 D hypothetical protein 2289623..2291149 Candidatus Protochlamydia amoebophila UWE25 2780122 YP_008924.1 CDS pc1925 NC_005861.1 2291729 2292181 D strongly similar to endonuclease G, mitochondrial precursor; endonuclease G, mitochondrial 2291729..2292181 Candidatus Protochlamydia amoebophila UWE25 2780123 YP_008925.1 CDS pc1926 NC_005861.1 2292758 2295043 D hypothetical protein 2292758..2295043 Candidatus Protochlamydia amoebophila UWE25 2780124 YP_008926.1 CDS pc1927 NC_005861.1 2295124 2295453 D hypothetical protein 2295124..2295453 Candidatus Protochlamydia amoebophila UWE25 2780125 YP_008927.1 CDS pc1928 NC_005861.1 2296169 2297755 D hypothetical protein 2296169..2297755 Candidatus Protochlamydia amoebophila UWE25 2781007 YP_008928.1 CDS pc1929 NC_005861.1 2297918 2298277 R hypothetical protein complement(2297918..2298277) Candidatus Protochlamydia amoebophila UWE25 2781008 YP_008929.1 CDS pc1930 NC_005861.1 2298379 2298708 R hypothetical protein complement(2298379..2298708) Candidatus Protochlamydia amoebophila UWE25 2781009 YP_008930.1 CDS pc1931 NC_005861.1 2298766 2299356 R hypothetical protein complement(2298766..2299356) Candidatus Protochlamydia amoebophila UWE25 2780959 YP_008931.1 CDS pc1932 NC_005861.1 2299360 2299608 R hypothetical protein complement(2299360..2299608) Candidatus Protochlamydia amoebophila UWE25 2780960 YP_008932.1 CDS pc1933 NC_005861.1 2299768 2300016 D hypothetical protein 2299768..2300016 Candidatus Protochlamydia amoebophila UWE25 2780961 YP_008933.1 CDS pc1934 NC_005861.1 2300856 2301641 R hypothetical protein complement(2300856..2301641) Candidatus Protochlamydia amoebophila UWE25 2780962 YP_008934.1 CDS pc1935 NC_005861.1 2301641 2303155 R hypothetical protein complement(2301641..2303155) Candidatus Protochlamydia amoebophila UWE25 2781044 YP_008935.1 CDS pc1936 NC_005861.1 2303617 2304747 R hypothetical protein complement(2303617..2304747) Candidatus Protochlamydia amoebophila UWE25 2781045 YP_008936.1 CDS pc1937 NC_005861.1 2305622 2306311 D hypothetical protein 2305622..2306311 Candidatus Protochlamydia amoebophila UWE25 2781046 YP_008937.1 CDS pc1938 NC_005861.1 2306583 2306882 R hypothetical protein complement(2306583..2306882) Candidatus Protochlamydia amoebophila UWE25 2779403 YP_008938.1 CDS pc1939 NC_005861.1 2306869 2307153 R hypothetical protein complement(2306869..2307153) Candidatus Protochlamydia amoebophila UWE25 2779404 YP_008939.1 CDS pc1940 NC_005861.1 2307234 2307437 D hypothetical protein 2307234..2307437 Candidatus Protochlamydia amoebophila UWE25 2779405 YP_008940.1 CDS pc1941 NC_005861.1 2307421 2307618 D hypothetical protein 2307421..2307618 Candidatus Protochlamydia amoebophila UWE25 2779406 YP_008941.1 CDS pc1942 NC_005861.1 2307592 2307801 R hypothetical protein complement(2307592..2307801) Candidatus Protochlamydia amoebophila UWE25 2781168 YP_008942.1 CDS pc1943 NC_005861.1 2308010 2308225 R hypothetical protein complement(2308010..2308225) Candidatus Protochlamydia amoebophila UWE25 2781169 YP_008943.1 CDS pc1944 NC_005861.1 2308479 2311487 R hypothetical protein complement(2308479..2311487) Candidatus Protochlamydia amoebophila UWE25 2781170 YP_008944.1 CDS pc1945 NC_005861.1 2311956 2312249 D hypothetical protein 2311956..2312249 Candidatus Protochlamydia amoebophila UWE25 2780963 YP_008945.1 CDS pc1946 NC_005861.1 2312588 2313976 D hypothetical protein 2312588..2313976 Candidatus Protochlamydia amoebophila UWE25 2780964 YP_008946.1 CDS pc1947 NC_005861.1 2313992 2316535 R hypothetical protein complement(2313992..2316535) Candidatus Protochlamydia amoebophila UWE25 2780965 YP_008947.1 CDS pc1948 NC_005861.1 2317349 2317600 D hypothetical protein 2317349..2317600 Candidatus Protochlamydia amoebophila UWE25 2780966 YP_008948.1 CDS pc1949 NC_005861.1 2317694 2317912 R hypothetical protein complement(2317694..2317912) Candidatus Protochlamydia amoebophila UWE25 2781041 YP_008949.1 CDS pc1950 NC_005861.1 2318137 2318319 R hypothetical protein complement(2318137..2318319) Candidatus Protochlamydia amoebophila UWE25 2781042 YP_008950.1 CDS pc1951 NC_005861.1 2318749 2319084 D strongly similar to metalloproteinase; metalloproteinase 2318749..2319084 Candidatus Protochlamydia amoebophila UWE25 2781043 YP_008951.1 CDS pc1952 NC_005861.1 2319305 2320414 D hypothetical protein 2319305..2320414 Candidatus Protochlamydia amoebophila UWE25 2780550 YP_008952.1 CDS pc1953 NC_005861.1 2320619 2321038 R hypothetical protein complement(2320619..2321038) Candidatus Protochlamydia amoebophila UWE25 2780551 YP_008953.1 CDS pc1954 NC_005861.1 2321877 2323991 R hypothetical protein complement(2321877..2323991) Candidatus Protochlamydia amoebophila UWE25 2780552 YP_008954.1 CDS pc1955 NC_005861.1 2324633 2325997 R hypothetical protein complement(2324633..2325997) Candidatus Protochlamydia amoebophila UWE25 2780553 YP_008955.1 CDS pc1956 NC_005861.1 2326645 2328624 R hypothetical protein complement(2326645..2328624) Candidatus Protochlamydia amoebophila UWE25 2781066 YP_008956.1 CDS pc1957 NC_005861.1 2329502 2332936 D hypothetical protein 2329502..2332936 Candidatus Protochlamydia amoebophila UWE25 2781067 YP_008957.1 CDS pc1958 NC_005861.1 2333167 2334627 R similar to metalloproteinase; metalloproteinase complement(2333167..2334627) Candidatus Protochlamydia amoebophila UWE25 2781068 YP_008958.1 CDS pc1959 NC_005861.1 2335054 2335311 R hypothetical protein complement(2335054..2335311) Candidatus Protochlamydia amoebophila UWE25 2780259 YP_008959.1 CDS pc1960 NC_005861.1 2336067 2337143 D hypothetical protein 2336067..2337143 Candidatus Protochlamydia amoebophila UWE25 2780260 YP_008960.1 CDS pc1961 NC_005861.1 2337716 2338819 R hypothetical protein complement(2337716..2338819) Candidatus Protochlamydia amoebophila UWE25 2780261 YP_008961.1 CDS pc1962 NC_005861.1 2338950 2339327 D hypothetical protein 2338950..2339327 Candidatus Protochlamydia amoebophila UWE25 2780262 YP_008962.1 CDS pc1963 NC_005861.1 2339342 2340154 D hypothetical protein 2339342..2340154 Candidatus Protochlamydia amoebophila UWE25 2780562 YP_008963.1 CDS pc1964 NC_005861.1 2340151 2340372 R hypothetical protein complement(2340151..2340372) Candidatus Protochlamydia amoebophila UWE25 2780563 YP_008964.1 CDS pc1965 NC_005861.1 2340693 2341673 R similar to metalloproteinase; metalloproteinase complement(2340693..2341673) Candidatus Protochlamydia amoebophila UWE25 2780564 YP_008965.1 CDS pc1966 NC_005861.1 2342123 2345971 R hypothetical protein complement(2342123..2345971) Candidatus Protochlamydia amoebophila UWE25 2780992 YP_008966.1 CDS pc1967 NC_005861.1 2346042 2346227 D hypothetical protein 2346042..2346227 Candidatus Protochlamydia amoebophila UWE25 2780993 YP_008967.1 CDS pc1968 NC_005861.1 2346419 2347696 D hypothetical protein 2346419..2347696 Candidatus Protochlamydia amoebophila UWE25 2780994 YP_008968.1 CDS pc1969 NC_005861.1 2348254 2348481 D hypothetical protein 2348254..2348481 Candidatus Protochlamydia amoebophila UWE25 2780995 YP_008969.1 CDS pc1970 NC_005861.1 2348785 2350086 D hypothetical protein 2348785..2350086 Candidatus Protochlamydia amoebophila UWE25 2780989 YP_008970.1 CDS pc1971 NC_005861.1 2350735 2351406 R hypothetical protein complement(2350735..2351406) Candidatus Protochlamydia amoebophila UWE25 2780990 YP_008971.1 CDS pc1972 NC_005861.1 2351635 2353578 D hypothetical protein 2351635..2353578 Candidatus Protochlamydia amoebophila UWE25 2780991 YP_008972.1 CDS pc1973 NC_005861.1 2353687 2353902 D hypothetical protein 2353687..2353902 Candidatus Protochlamydia amoebophila UWE25 2780996 YP_008973.1 CDS pc1974 NC_005861.1 2353914 2354600 R hypothetical protein complement(2353914..2354600) Candidatus Protochlamydia amoebophila UWE25 2780997 YP_008974.1 CDS hemF NC_005861.1 2354640 2355440 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(2354640..2355440) Candidatus Protochlamydia amoebophila UWE25 2781262 YP_008975.1 CDS pc1976 NC_005861.1 2356218 2356511 R hypothetical protein complement(2356218..2356511) Candidatus Protochlamydia amoebophila UWE25 2780998 YP_008976.1 CDS fixO NC_005861.1 2356704 2357951 R similar to cytochrome-c oxidase fixO chain; cytochrome-c oxidase fixO chain complement(2356704..2357951) Candidatus Protochlamydia amoebophila UWE25 2780496 YP_008977.1 CDS fixN NC_005861.1 2358011 2359426 R similar to cytochrome-c oxidase fixN chain; cytochrome-c oxidase fixN chain complement(2358011..2359426) Candidatus Protochlamydia amoebophila UWE25 2780495 YP_008978.1 CDS pc1979 NC_005861.1 2359632 2359865 R hypothetical protein complement(2359632..2359865) Candidatus Protochlamydia amoebophila UWE25 2780999 YP_008979.1 CDS pc1980 NC_005861.1 2360301 2360522 D hypothetical protein 2360301..2360522 Candidatus Protochlamydia amoebophila UWE25 2780689 YP_008980.1 CDS pc1981 NC_005861.1 2360965 2361525 D hypothetical protein 2360965..2361525 Candidatus Protochlamydia amoebophila UWE25 2780690 YP_008981.1 CDS pc1982 NC_005861.1 2361598 2362713 R hypothetical protein complement(2361598..2362713) Candidatus Protochlamydia amoebophila UWE25 2780691 YP_008982.1 CDS talB NC_005861.1 2362779 2363438 R similar to transaldolase; transaldolase complement(2362779..2363438) Candidatus Protochlamydia amoebophila UWE25 2781400 YP_008983.1 CDS pc1984 NC_005861.1 2363677 2366031 R hypothetical protein complement(2363677..2366031) Candidatus Protochlamydia amoebophila UWE25 2780030 YP_008984.1 CDS pc1985 NC_005861.1 2366306 2367910 R hypothetical protein complement(2366306..2367910) Candidatus Protochlamydia amoebophila UWE25 2780031 YP_008985.1 CDS pc1986 NC_005861.1 2368068 2368730 R hypothetical protein complement(2368068..2368730) Candidatus Protochlamydia amoebophila UWE25 2780032 YP_008986.1 CDS pc1987 NC_005861.1 2368949 2369842 R hypothetical protein complement(2368949..2369842) Candidatus Protochlamydia amoebophila UWE25 2780033 YP_008987.1 CDS pc1988 NC_005861.1 2369983 2370258 R hypothetical protein complement(2369983..2370258) Candidatus Protochlamydia amoebophila UWE25 2779655 YP_008988.1 CDS pc1989 NC_005861.1 2370469 2372046 D hypothetical protein 2370469..2372046 Candidatus Protochlamydia amoebophila UWE25 2779656 YP_008989.1 CDS pc1990 NC_005861.1 2372049 2372672 D hypothetical protein 2372049..2372672 Candidatus Protochlamydia amoebophila UWE25 2779657 YP_008990.1 CDS pc1991 NC_005861.1 2372696 2373970 D hypothetical protein 2372696..2373970 Candidatus Protochlamydia amoebophila UWE25 2779584 YP_008991.1 CDS pc1992 NC_005861.1 2373951 2375564 D hypothetical protein 2373951..2375564 Candidatus Protochlamydia amoebophila UWE25 2779585 YP_008992.1 CDS pc1993 NC_005861.1 2375570 2375959 D hypothetical protein 2375570..2375959 Candidatus Protochlamydia amoebophila UWE25 2779586 YP_008993.1 CDS pc1994 NC_005861.1 2376295 2376597 D hypothetical protein 2376295..2376597 Candidatus Protochlamydia amoebophila UWE25 2779587 YP_008994.1 CDS recA NC_005861.1 2376732 2377817 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2376732..2377817 Candidatus Protochlamydia amoebophila UWE25 2779801 YP_008995.1 CDS ispA NC_005861.1 2377971 2378780 R similar to geranyltranstransferase; geranyltranstransferase complement(2377971..2378780) Candidatus Protochlamydia amoebophila UWE25 2780540 YP_008996.1 CDS glmU NC_005861.1 2379041 2379721 R similar to UDP-N-acetylglucosamine diphosphorylase; UDP-N-acetylglucosamine diphosphorylase complement(2379041..2379721) Candidatus Protochlamydia amoebophila UWE25 2780379 YP_008997.1 CDS rumA NC_005861.1 2380126 2381277 D similar to 23S rRNA (Uracil-5-)-methyltransferase; 23S rRNA (Uracil-5-)-methyltransferase 2380126..2381277 Candidatus Protochlamydia amoebophila UWE25 2779575 YP_008998.1 CDS mgtC NC_005861.1 2381396 2382085 D strongly similar to mgtC protein; mgtC protein 2381396..2382085 Candidatus Protochlamydia amoebophila UWE25 2780598 YP_008999.1 CDS pc2000 NC_005861.1 2382875 2383123 R hypothetical protein complement(2382875..2383123) Candidatus Protochlamydia amoebophila UWE25 2779465 YP_009000.1 CDS pc2001 NC_005861.1 2383335 2384204 R hypothetical protein complement(2383335..2384204) Candidatus Protochlamydia amoebophila UWE25 2779466 YP_009001.1 CDS pc2002 NC_005861.1 2384192 2384785 R hypothetical protein complement(2384192..2384785) Candidatus Protochlamydia amoebophila UWE25 2779467 YP_009002.1 CDS pc2003 NC_005861.1 2384841 2385404 R hypothetical protein complement(2384841..2385404) Candidatus Protochlamydia amoebophila UWE25 2780717 YP_009003.1 CDS cbbY NC_005861.1 2385436 2386221 R hypothetical protein complement(2385436..2386221) Candidatus Protochlamydia amoebophila UWE25 2780414 YP_009004.1 CDS pc2005 NC_005861.1 2386243 2386434 D hypothetical protein 2386243..2386434 Candidatus Protochlamydia amoebophila UWE25 2780718 YP_009005.1 CDS pc2006 NC_005861.1 2386438 2386965 R hypothetical protein complement(2386438..2386965) Candidatus Protochlamydia amoebophila UWE25 2780719 YP_009006.1 CDS pc2007 NC_005861.1 2387049 2387351 R hypothetical protein complement(2387049..2387351) Candidatus Protochlamydia amoebophila UWE25 2780720 YP_009007.1 CDS pc2008 NC_005861.1 2387591 2387839 R hypothetical protein complement(2387591..2387839) Candidatus Protochlamydia amoebophila UWE25 2779501 YP_009008.1 CDS pc2009 NC_005861.1 2387889 2388488 R hypothetical protein complement(2387889..2388488) Candidatus Protochlamydia amoebophila UWE25 2779502 YP_009009.1 CDS pc2010 NC_005861.1 2389663 2390037 R hypothetical protein complement(2389663..2390037) Candidatus Protochlamydia amoebophila UWE25 2779503 YP_009010.1 CDS pc2011 NC_005861.1 2390316 2390648 R hypothetical protein complement(2390316..2390648) Candidatus Protochlamydia amoebophila UWE25 2780724 YP_009011.1 CDS ung NC_005861.1 2390751 2391461 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(2390751..2391461) Candidatus Protochlamydia amoebophila UWE25 2781456 YP_009012.1 CDS pc2013 NC_005861.1 2391461 2392198 R hypothetical protein complement(2391461..2392198) Candidatus Protochlamydia amoebophila UWE25 2780725 YP_009013.1 CDS parA NC_005861.1 2392264 2393016 R similar to partition protein; partition protein complement(2392264..2393016) Candidatus Protochlamydia amoebophila UWE25 2780862 YP_009014.1 CDS thrS NC_005861.1 2393020 2394972 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2393020..2394972) Candidatus Protochlamydia amoebophila UWE25 2779714 YP_009015.1 CDS pc2016 NC_005861.1 2395680 2395880 D hypothetical protein 2395680..2395880 Candidatus Protochlamydia amoebophila UWE25 2780726 YP_009016.1 CDS pc2017 NC_005861.1 2396073 2397290 R hypothetical protein complement(2396073..2397290) Candidatus Protochlamydia amoebophila UWE25 2780727 YP_009017.1 CDS pc2018 NC_005861.1 2397920 2398120 R hypothetical protein complement(2397920..2398120) Candidatus Protochlamydia amoebophila UWE25 2780547 YP_009018.1 CDS pc2019 NC_005861.1 2398864 2401743 D hypothetical protein 2398864..2401743 Candidatus Protochlamydia amoebophila UWE25 2780548 YP_009019.1 CDS pc2020 NC_005861.1 2402185 2402502 D hypothetical protein 2402185..2402502 Candidatus Protochlamydia amoebophila UWE25 2780549 YP_009020.1 CDS pc2021 NC_005861.1 2402535 2402726 D hypothetical protein 2402535..2402726 Candidatus Protochlamydia amoebophila UWE25 2780915 YP_009021.1 CDS pc2022 NC_005861.1 2403395 2404831 R hypothetical protein complement(2403395..2404831) Candidatus Protochlamydia amoebophila UWE25 2780916 YP_009022.1 CDS pc2023 NC_005861.1 2404926 2406377 R hypothetical protein complement(2404926..2406377) Candidatus Protochlamydia amoebophila UWE25 2780917 YP_009023.1 CDS pc2024 NC_005861.1 2407806 2408645 D hypothetical protein 2407806..2408645 Candidatus Protochlamydia amoebophila UWE25 2780918 YP_009024.1 CDS pc2025 NC_005861.1 2408632 2408991 D hypothetical protein 2408632..2408991 Candidatus Protochlamydia amoebophila UWE25 2779877 YP_009025.1 CDS pc2026 NC_005861.1 2410101 2410292 D hypothetical protein 2410101..2410292 Candidatus Protochlamydia amoebophila UWE25 2779878 YP_009026.1 CDS pc2027 NC_005861.1 2410591 2411871 R hypothetical protein complement(2410591..2411871) Candidatus Protochlamydia amoebophila UWE25 2779879 YP_009027.1 CDS pc2028 NC_005861.1 2412042 2412704 D hypothetical protein 2412042..2412704 Candidatus Protochlamydia amoebophila UWE25 2780249 YP_009028.1 CDS pc2029 NC_005861.1 2413078 2413377 R hypothetical protein complement(2413078..2413377) Candidatus Protochlamydia amoebophila UWE25 2780250 YP_009029.1 CDS pc2030 NC_005861.1 2413729 2413986 R hypothetical protein complement(2413729..2413986) Candidatus Protochlamydia amoebophila UWE25 2780251 YP_009030.1 CDS pc2031 NC_005861.1 2414174 2414392 D hypothetical protein 2414174..2414392 Candidatus Protochlamydia amoebophila UWE25 2780252 pct01 tRNA pct01 NC_005861.1 37322 37395 R tRNA-Arg complement(37322..37395) Candidatus Protochlamydia amoebophila UWE25 2780614 pct02 tRNA pct02 NC_005861.1 128380 128452 D tRNA-Ala 128380..128452 Candidatus Protochlamydia amoebophila UWE25 2780613 pct03 tRNA pct03 NC_005861.1 208862 208932 D tRNA-Gly 208862..208932 Candidatus Protochlamydia amoebophila UWE25 2779509 pct04 tRNA pct04 NC_005861.1 310157 310229 D tRNA-Phe 310157..310229 Candidatus Protochlamydia amoebophila UWE25 2780187 pct05 tRNA pct05 NC_005861.1 435123 435196 R tRNA-Arg complement(435123..435196) Candidatus Protochlamydia amoebophila UWE25 2780615 pct06 tRNA pct06 NC_005861.1 442137 442220 R tRNA-Leu complement(442137..442220) Candidatus Protochlamydia amoebophila UWE25 2781224 pct07 tRNA pct07 NC_005861.1 450594 450676 D tRNA-Leu 450594..450676 Candidatus Protochlamydia amoebophila UWE25 2779911 pct08 tRNA pct08 NC_005861.1 463504 463576 R tRNA-Arg complement(463504..463576) Candidatus Protochlamydia amoebophila UWE25 2780616 pct09 tRNA pct09 NC_005861.1 464404 464487 D tRNA-Leu 464404..464487 Candidatus Protochlamydia amoebophila UWE25 2779912 pct10 tRNA pct10 NC_005861.1 486773 486845 R tRNA-Arg complement(486773..486845) Candidatus Protochlamydia amoebophila UWE25 2779750 pct11 tRNA pct11 NC_005861.1 566025 566108 D tRNA-Leu 566025..566108 Candidatus Protochlamydia amoebophila UWE25 2781222 pct12 tRNA pct12 NC_005861.1 606996 607069 R tRNA-His complement(606996..607069) Candidatus Protochlamydia amoebophila UWE25 2779910 pct13 tRNA pct13 NC_005861.1 641151 641223 D tRNA-Met 641151..641223 Candidatus Protochlamydia amoebophila UWE25 2781226 pct14 tRNA pct14 NC_005861.1 732847 732918 D tRNA-Thr 732847..732918 Candidatus Protochlamydia amoebophila UWE25 2780884 pct15 tRNA pct15 NC_005861.1 734222 734294 D tRNA-Trp 734222..734294 Candidatus Protochlamydia amoebophila UWE25 2780886 pct16 tRNA pct16 NC_005861.1 768930 769017 R tRNA-Ser complement(768930..769017) Candidatus Protochlamydia amoebophila UWE25 2779532 pct17 tRNA pct17 NC_005861.1 853577 853650 D tRNA-Val 853577..853650 Candidatus Protochlamydia amoebophila UWE25 2780470 pct18 tRNA pct18 NC_005861.1 878495 878576 D tRNA-Leu 878495..878576 Candidatus Protochlamydia amoebophila UWE25 2781223 pct19 tRNA pct19 NC_005861.1 958032 958105 R tRNA-Asp complement(958032..958105) Candidatus Protochlamydia amoebophila UWE25 2779752 pct20 tRNA pct20 NC_005861.1 958118 958190 R tRNA-Val complement(958118..958190) Candidatus Protochlamydia amoebophila UWE25 2780471 pct21 tRNA pct21 NC_005861.1 1013700 1013772 D tRNA-Met 1013700..1013772 Candidatus Protochlamydia amoebophila UWE25 2780185 pct22 tRNA pct22 NC_005861.1 1013785 1013857 D tRNA-Met 1013785..1013857 Candidatus Protochlamydia amoebophila UWE25 2780186 pct23 tRNA pct23 NC_005861.1 1039856 1039937 R tRNA-Tyr complement(1039856..1039937) Candidatus Protochlamydia amoebophila UWE25 2780887 pct24 tRNA pct24 NC_005861.1 1039951 1040023 R tRNA-Thr complement(1039951..1040023) Candidatus Protochlamydia amoebophila UWE25 2780885 pct25 tRNA pct25 NC_005861.1 1296930 1297004 D tRNA-Pro 1296930..1297004 Candidatus Protochlamydia amoebophila UWE25 2780188 pct26 tRNA pct26 NC_005861.1 1408186 1408257 D tRNA-Asn 1408186..1408257 Candidatus Protochlamydia amoebophila UWE25 2779751 pct27 tRNA pct27 NC_005861.1 1499806 1499877 D tRNA-Cys 1499806..1499877 Candidatus Protochlamydia amoebophila UWE25 2779753 pct28 tRNA pct28 NC_005861.1 1648172 1648243 D tRNA-Gly 1648172..1648243 Candidatus Protochlamydia amoebophila UWE25 2779510 pct29 tRNA pct29 NC_005861.1 1648332 1648403 D tRNA-Gly 1648332..1648403 Candidatus Protochlamydia amoebophila UWE25 2779909 pct30 tRNA pct30 NC_005861.1 1910152 1910223 R tRNA-Gln complement(1910152..1910223) Candidatus Protochlamydia amoebophila UWE25 2779507 pct31 tRNA pct31 NC_005861.1 2160172 2160259 R tRNA-Ser complement(2160172..2160259) Candidatus Protochlamydia amoebophila UWE25 2779533 pct32 tRNA tRNA-Ser NC_005861.1 2164508 2164595 D tRNA-Ser 2164508..2164595 Candidatus Protochlamydia amoebophila UWE25 2779531 pct33 tRNA pct33 NC_005861.1 2236176 2236249 R tRNA-Lys complement(2236176..2236249) Candidatus Protochlamydia amoebophila UWE25 2781225 pct34 tRNA pct34 NC_005861.1 2236254 2236328 R tRNA-Glu complement(2236254..2236328) Candidatus Protochlamydia amoebophila UWE25 2779508 pct35 tRNA pct35 NC_005861.1 2387508 2387582 R tRNA-Pro complement(2387508..2387582) Candidatus Protochlamydia amoebophila UWE25 2779530 pcr01 rRNA pcr01 NC_005861.1 1227275 1227391 R 5S ribosomal RNA complement(1227275..1227391) Candidatus Protochlamydia amoebophila UWE25 2779415 pcr02 rRNA pcr02 NC_005861.1 1227524 1230471 R 23S ribosomal RNA complement(1227524..1230471) Candidatus Protochlamydia amoebophila UWE25 2779412 pcr03 rRNA pcr03 NC_005861.1 1230812 1232292 R 16S ribosomal RNA complement(1230812..1232292) Candidatus Protochlamydia amoebophila UWE25 2780403 pcr04 rRNA pcr04 NC_005861.1 1857631 1857747 R 5S ribosomal RNA complement(1857631..1857747) Candidatus Protochlamydia amoebophila UWE25 2779534 pcr05 rRNA pcr05 NC_005861.1 1857880 >1858685 R 23S ribosomal RNA complement(1857880..>1858685) Candidatus Protochlamydia amoebophila UWE25 2779413 pcr06 rRNA pcr06 NC_005861.1 <1858686 1859583 R 16S ribosomal RNA complement(<1858686..1859583) Candidatus Protochlamydia amoebophila UWE25 2780404 pcr07 rRNA pcr07 NC_005861.1 2127797 2127913 R 5S ribosomal RNA complement(2127797..2127913) Candidatus Protochlamydia amoebophila UWE25 2779535 pcr08 rRNA pcr08 NC_005861.1 2128046 2130993 R 23S ribosomal RNA complement(2128046..2130993) Candidatus Protochlamydia amoebophila UWE25 2779414 pcr09 rRNA pcr09 NC_005861.1 2131334 2132814 R 16S ribosomal RNA complement(2131334..2132814) Candidatus Protochlamydia amoebophila UWE25 2780405