-- dump date 20140619_024837 -- class Genbank::CDS -- table cds_note -- id note YP_007007.1 similar to exodeoxyribonuclease V gamma chain YP_007008.1 similar to exodeoxyribonuclease V beta chain YP_007009.1 similar to exodeoxyribonuclease V alpha chain recD YP_007012.1 similar to substrate-binding protein of aliphatic sulfonate ABC transporter YP_007013.1 strongly similar to ATP-binding component of ABC transporters YP_007014.1 similar to integral membrane components of the ABC transporters YP_007015.1 similar to bifunctional protein UDP-N-acetylglucosamine pyrophosphorylases, Glucosamine-1-phosphate N-acetyltransferase YP_007016.1 similar to ADP-heptose--lipopolysaccharide heptosyltransferase II YP_007018.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_007019.1 strongly similar to Holliday junction DNA helicase YP_007020.1 strongly similar to endonuclease III (UV endonuclease) YP_007021.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_007022.1 similar to phosphatidylserine decarboxylase proenzyme YP_007023.1 strongly similar to proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA) YP_007026.1 similar to ribosomal protein L11 methyltransferase YP_007029.1 strongly similar to 60 kDa chaperonin (GroEL) YP_007030.1 strongly similar to chaperonin groES YP_007032.1 similar to bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase) YP_007033.1 strongly similar to ATP-dependent DNA helicase YP_007036.1 similar to metalloprotease YP_007059.1 similar to extracellular metalloproteinase YP_007066.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_007068.2 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_007070.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_007071.1 similar to protein required for chromosomal DNA transformation YP_007072.1 similar to 3-dehydroquinate synthase YP_007076.1 similar to chromosome partitioning protein YP_007077.1 similar to copper-transporting ATPase YP_007078.1 strongly similar to UDP-glucuronat epimerase YP_007082.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_007084.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_007085.1 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation YP_007088.1 similar to A/G-specific adenine glycosylase, mutY YP_007090.1 similar to bacterioferritin comigratory protein (BCP) YP_007091.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_007093.1 similar to Na(+)/H(+) antiporter YP_007094.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_007095.1 strongly similar to ATP binding protein, component of oligopeptide permease, oppF YP_007096.1 strongly similar to ATP binding protein, component of oligopeptide permease, oppD YP_007100.1 similar to oligopeptide transport system permease, oppC YP_007101.1 similar to dipeptide transport system permease, dppB YP_007102.1 similar to substrate binding proteins, component of oligopeptide permease, oppA YP_007105.1 strongly similar to glycogen phosphorylase YP_007107.1 similar to amino acid ABC transporter, periplasmic amino acid-binding protein YP_007108.1 strongly similar to glucose-1-phosphate adenylyltransferase YP_007110.1 similar to ribonucleoside triphosphate reductase YP_007113.1 similar to batE protein YP_007118.1 similar to batA protein YP_007119.1 similar to protein involved in cell wall biosynthesis, morphogenesis and cell division YP_007122.1 strongly similar to glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase), rfbA YP_007123.1 strongly similar to dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC YP_007124.1 similar to dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD YP_007125.1 strongly similar to dTDP-glucose 4,6-dehydratase, rfbB YP_007126.1 similar to multidrug resistance membrane translocase, emrB YP_007127.1 strongly similar to multidrug resistance protein, emrA YP_007130.1 similar to ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA YP_007131.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_007132.1 similar to acylase and diesterase YP_007135.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_007136.2 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_007138.1 similar to methyl-directed mismatch repair (MMR) protein, mutL YP_007139.1 similar to poly A polymerase YP_007142.1 strongly similar to phosphopyruvate hydratase (enolase) YP_007145.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_007147.1 similar to aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase) YP_007148.1 similar to arsenical pump membrane protein YP_007150.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_007151.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_007159.1 similar to ribosomal large chain pseudouridine synthase B YP_007160.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_007161.1 similar to iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS YP_007162.1 similar to iron-sulfur cluster assembly protein nifU YP_007164.1 similar to biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional) YP_007165.1 strongly similar to cell shape (rod)-determining protein YP_007167.1 similar to tyrosine/tryptophan transport protein YP_007168.1 similar to tyrosine/tryptophan transport protein YP_007169.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_007170.1 similar to O-linked N-acetylglucosamine transferase YP_007171.1 similar to O-linked N-acetylglucosamine transferase YP_007172.1 similar to O-linked N-acetylglucosamine transferase YP_007173.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_007175.1 similar to ATP-dependent DNA helicase dinG YP_007176.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released YP_007180.1 strongly similar to ABC transporter ATP-binding protein wzt YP_007181.1 strongly similar to ABC transporter protein wzm YP_007185.1 similar to polysaccharide export protein wza YP_007186.1 similar to Tyrosine-protein kinase YP_007188.1 with SufCD activates cysteine desulfurase SufS YP_007189.1 strongly similar to ABC transporter ATP-binding protein sufC YP_007190.1 similar to sufD YP_007191.1 strongly similar to SufS L-cysteine desulfurase/L-selenocysteine lyase YP_007194.1 similar to metalloendopeptidase YP_007195.1 similar to glycerophosphoryl diester phosphodiesterase YP_007197.1 similar to F-box protein YP_007198.1 similar to F-box protein YP_007199.1 similar to type III secretion inner membrane protein SctT YP_007200.1 strongly similar to type III secretion inner membrane protein SctS YP_007201.1 similar to type III secretion inner membrane protein SctR YP_007202.1 similar to type III secretion protein SctL YP_007204.1 similar to type III secretion protein SctJ YP_007205.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_007206.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_007207.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_007208.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_007213.1 similar to carboxy-terminal (= tail-specific) proteinase YP_007216.1 strongly similar to 50S ribosomal protein L21 YP_007217.1 involved in the peptidyltransferase reaction during translation YP_007218.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_007220.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_007221.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_007222.1 strongly similar to DNA polymerase I YP_007223.1 similar to proteinase IV YP_007225.1 similar to sulfite reductase (NADPH) flavoprotein YP_007226.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_007228.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_007230.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_007231.1 similar to endopeptidase Clp ATP-binding chain B (heat shock protein) YP_007235.1 3'-5' exonuclease of DNA polymerase III YP_007236.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_007237.1 similar to glutamine amidotransferase YP_007238.1 strongly similar to 3-phosphoglycerate kinase YP_007239.1 strongly similar to ADP/ATP translocase YP_007240.1 strongly similar to ADP/ATP translocase YP_007241.1 similar to Phosphatidylglycerophosphate synthase (= CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase ) YP_007243.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_007245.1 similar to carboxy-terminal (= tail-specific) proteinase YP_007246.1 strongly similar to lysine-rich histone-specific protease YP_007247.1 similar to RNA methyl transferase YP_007248.1 similar to ssDNA-specific exonuclease YP_007249.1 strongly similar to ADP/ATP translocase YP_007250.1 similar to fusion protein export proteins SecD/SecF YP_007255.1 similar to ABC transporter periplasmic substrate-binding protein ytgA YP_007256.1 similar to ABC transporter ATP-binding protein ytgB YP_007257.1 similar to ABC transporter permease ytgC YP_007258.1 similar to ABC transporter permease ytgD YP_007259.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_007265.1 similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) YP_007266.1 similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) YP_007267.1 strongly similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase YP_007268.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_007269.1 strongly similar to superoxide dismutase (Mn) precursor YP_007270.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_007271.1 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_007272.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_007273.1 similar to Ribonuclease III YP_007280.1 strongly similar to glycine cleavage system T protein YP_007281.1 strongly similar to glycine cleavage system H protein YP_007282.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_007283.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_007285.1 strongly similar to alkylated DNA repair protein YP_007286.1 similar to cadmium-transporting ATPase YP_007287.1 strongly similar to cation efflux system membrane protein A YP_007288.1 similar to cation efflux system membrane protein B YP_007289.1 similar to cation efflux system membrane protein C YP_007297.1 strongly similar to sodium-translocating NADH dehydrogenase (ubiquinone) chain E YP_007298.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm YP_007299.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_007300.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_007304.1 similar to competence-related protein comF YP_007305.1 similar to divalent cation transport protein YP_007306.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_007310.1 strongly similar to S-adenosyl-methyltransferase YP_007312.1 similar to penicillin-binding protein 2 (transglycolase/transpeptidase) YP_007313.1 similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase YP_007314.1 similar to N-acetylmuramoyl-L-alanine amidase YP_007316.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_007317.1 similar to 1-acylglycerol-3-phosphate O-acyltransferase YP_007318.1 strongly similar to cytidylate kinase YP_007319.1 similar to phosphatidate cytidylyltransferase YP_007320.1 strongly similar to undecaprenyl pyrophosphate synthetase YP_007321.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_007326.1 similar to 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_007327.1 similar to tRNA pseudouridylate synthase I YP_007339.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_007344.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_007345.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_007346.1 similar to glutamyl tRNA reductase YP_007349.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_007350.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_007354.1 strongly similar to 23S RNA-specific pseudouridine synthase D YP_007355.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_007360.1 similar to multifunctional folic acid synthesis protein YP_007361.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_007365.1 strongly similar to nucleoside-diphosphate kinase YP_007366.1 strongly similar to p-aminobenzoate synthase YP_007367.1 strongly similar to nucleoside-diphosphate kinase YP_007368.1 similar to phenylalanine-tRNA ligase beta chain YP_007370.1 similar to ferredoxin [2Fe-2S] IV YP_007374.1 similar to rapA, a bacterial member of the swi/snf helicase YP_007378.1 strongly similar to thioredoxin YP_007380.1 similar to glutathione-regulated potassium-efflux system protein YP_007382.1 similar to mip (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase) YP_007383.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_007384.1 strongly similar to histidine-tRNA ligase YP_007386.1 strongly similar to regulatory protein uhpC YP_007388.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_007391.1 similar to rsbW, negative regulator of sigma-B activity (switch protein/serine kinase) YP_007393.1 similar to serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) YP_007394.2 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_007396.1 similar to 16S rRNA m5C967 SAM-dependent methyltransferase YP_007397.1 similar to D-alanine--D-alanine ligase YP_007398.1 similar to eucaryotic myosin heavy chain YP_007399.1 transfers the fatty acyl group on membrane lipoproteins YP_007400.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_007401.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_007402.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_007403.1 strongly similar to methionyl-tRNA formyltransferase YP_007411.2 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_007412.2 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_007413.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_007414.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_007415.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_007416.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_007417.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_007418.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_007419.1 similar to 50S ribosomal protein L29 YP_007420.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_007421.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_007422.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_007423.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_007424.1 strongly similar to 30S ribosomal protein S8 YP_007425.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_007426.1 binds 5S rRNA along with protein L5 and L25 YP_007427.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_007428.1 strongly similar to 50S ribosomal protein L15 YP_007429.2 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_007430.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_007431.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_007432.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_007433.1 is a component of the macrolide binding site in the peptidyl transferase center YP_007434.1 strongly similar to Glyceraldehyde 3-P dehydrogenase A YP_007441.1 similar to diaminopimelate epimerase YP_007442.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_007443.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_007448.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_007449.1 similar to tRNA (Guanosine-2'-O-)-methyltransferase YP_007452.1 similar to ABC transporter substrate binding protein yaeC YP_007453.1 strongly similar to ABC transporter permease yaeE YP_007454.1 strongly similar to ABC transporter ATP-binding protein abc YP_007457.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_007458.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_007459.1 similar to glpG protein YP_007460.1 strongly similar to ADP-heptose synthase YP_007461.1 similar to endopeptidase (ATP-dependent serine protease) La YP_007464.1 similar to deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ) YP_007466.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_007467.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_007469.1 similar to multifunctional cell division protein ftsK YP_007470.1 similar to bacitracin resistance protein (probable undecaprenol kinase) YP_007473.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_007474.1 similar to phosphocarrier protein hpr (histidine-containing phosphocarrier protein of the PTS) YP_007475.1 similar to phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I) YP_007477.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_007483.1 similar to phosphate starvation-inducible protein (phoH) YP_007484.1 similar to ATP/ADP translocase (AATP1) precursor (Arabidopsis thaliana) YP_007486.1 similar to mutT protein YP_007493.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_007495.1 similar to signal peptidase I YP_007502.1 similar to DNA-3-methyladenine glycosylase II YP_007511.1 similar to antibiotic resistance protein YP_007517.1 strongly similar to DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase YP_007518.1 strongly similar to streptogramin A acetyltransferase YP_007530.1 similar to chloramphenicol 3-O phosphotransferase YP_007537.1 similar to RTX-toxin, partial length YP_007540.1 similar to Peptide deformylase YP_007542.1 strongly similar to oxidoreductase MocA family YP_007543.1 similar to nasA protein YP_007545.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_007547.1 similar to peptide chain release factor 2 YP_007549.1 similar to multidrug-efflux transport protein acrA YP_007550.1 strongly similar to multidrug-efflux transport protein, acrB YP_007551.1 similar to outer membrane protein, componenet of multidrug efflux systems YP_007554.1 similar to dTDP-glucose 4,6-dehydratase, rfbB YP_007558.1 similar to NADH-ubiquinone oxidoreductase chain A YP_007559.1 strongly similar to NADH-ubiquinone oxidoreductase chain B YP_007560.1 similar to NADH-ubiquinone oxidoreductase chain C/D YP_007561.1 similar to NADH-ubiquinone oxidoreductase chain C/D YP_007562.1 similar to NADH-ubiquinone oxidoreductase chain E YP_007563.1 strongly similar to NADH-ubiquinone oxidoreductase chain F YP_007564.1 similar to NADH-ubiquinone oxidoreductase chain G YP_007565.1 strongly similar to NADH-ubiquinone oxidoreductase chain H YP_007566.1 strongly similar to NADH-ubiquinone oxidoreductase chain I YP_007567.1 similar to NADH-ubiquinone oxidoreductase chain J YP_007568.1 similar to NADH-ubiquinone oxidoreductase chain K YP_007569.1 similar to NADH-ubiquinone oxidoreductase chain L YP_007570.1 similar to NADH-ubiquinone oxidoreductase chain M YP_007571.1 similar to NADH-ubiquinone oxidoreductase chain N YP_007582.1 similar to protein kinase C inhibitor 1 YP_007587.1 similar to ATP-binding cassette protein, nasD YP_007588.1 similar to aromatic amino acid-specific transport protein YP_007590.1 similar to heat shock protein 70 (chaperone protein dnaK) YP_007593.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_007594.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_007596.1 similar to preprotein translocase SecE YP_007597.1 similar to transcription antitermination factor NusG YP_007598.1 Modulates Rho-dependent transcription termination YP_007599.1 strongly similar to 50S ribosomal protein L11 YP_007600.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_007601.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_007602.1 strongly similar to 50S ribosomal protein L7/L12 YP_007603.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_007604.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_007605.1 strongly similar to peptidoglycan-associated lipoprotein precursor (pal) YP_007609.1 strongly similar to septum formation protein YP_007615.1 similar to 60 kDa cysteine-rich outer membrane protein YP_007616.1 similar to 9 kDa cysteine-rich outer membrane protein YP_007618.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_007619.1 similar to exodeoxyribonuclease VII, small chain YP_007620.1 similar to exodeoxyribonuclease VII, large chain YP_007621.1 similar to D-alanine/glycine transport protein, sodium-dependent YP_007622.1 strongly similar to endonuclease V (deoxyinosine 3'endonuclease) YP_007629.1 similar to Thermostable carboxypeptidase 1 YP_007630.1 similar to alanine racemase YP_007632.1 similar to acriflavin resistance protein D YP_007634.1 similar to outer membrane protein TolC YP_007639.1 strongly similar to cell division protein FtsH YP_007641.1 similar to beta-1,4-galactosyltransferase YP_007642.1 strongly similar to polyribonucleotide nucleotidyltransferase YP_007643.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_007650.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_007651.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_007652.1 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains YP_007653.1 strongly similar to signal recognition particle chain ffh YP_007654.1 similar to 30S ribosomal protein S16 YP_007655.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_007656.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_007657.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_007661.1 similar to guanylate kinase YP_007664.1 similar to methionine-tRNA ligase YP_007665.1 required for 70S ribosome assembly YP_007668.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_007669.1 strongly similar to glutamyl-tRNA(Gln) amidotransferase chain A YP_007670.1 similar to glutamyl-tRNA(Gln) amidotransferase chain C YP_007671.1 similar to photolyase YP_007676.1 similar to DNA repair protein RecN YP_007678.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_007681.1 similar to tRNA-pseudouridine synthase I YP_007684.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis YP_007685.1 similar to dihydrodipicolinate synthase YP_007686.1 similar to dihydrodipicolinate reductase YP_007688.1 similar to exodeoxyribonuclease V YP_007689.1 synthesizes RNA primers at the replication forks YP_007692.1 strongly similar to glycyl-tRNA synthetase YP_007696.1 similar to Excinuclease ABC subunit C YP_007700.1 similar to threonine-tRNA ligase YP_007701.1 strongly similar to translation initiation factor IF-3 YP_007702.1 strongly similar to 50S ribosomal protein L35 YP_007703.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_007704.1 strongly similar to phenylalanine-tRNA ligase alpha chain YP_007706.1 similar to heptosyltransferase I YP_007714.1 strongly similar to sugE protein YP_007718.1 similar to serine protease YP_007719.1 similar to serine/threonine phosphoprotein phosphatase YP_007720.1 similar to cysteine sulfinate desulfinase YP_007724.1 catalyzes the conversion of NADPH to NADH YP_007727.1 strongly similar to endopeptidase Clp ATP-binding chain YP_007738.1 similar to rhs core protein with extension YP_007739.1 strongly similar to gcpE protein YP_007744.1 amylomaltase; acts to release glucose from maltodextrins YP_007745.1 strongly similar to type III secretion chaperone sycE YP_007748.1 strongly similar to type III secretion pathway protein SctV YP_007749.1 similar to type III secretion pathway protein sctU YP_007751.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_007757.1 similar to riboflavin kinase/FMN adenylyltransferase YP_007758.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_007759.1 similar to ribosome binding factor A YP_007760.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_007761.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_007763.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_007764.1 strongly similar to aspartate kinase II precursor YP_007766.1 similar to branched-chain amino acid transport system II carrier protein YP_007767.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_007768.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_007770.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_007771.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_007777.1 similar to exopolysaccharide synthesis protein YP_007779.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides YP_007780.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_007782.1 strongly similar to XerD protein YP_007786.1 similar to regulatory protein, involved in type III secretion lcrH, sycD YP_007788.1 similar to alcohol dehydrogenase class III YP_007792.1 similar to mechanosensitive channel of large conductance YP_007793.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine) YP_007795.1 similar to tonoplast intrinsic protein (Aquaporin) YP_007800.1 strongly similar to triose-phosphate isomerase YP_007801.1 similar to integral membrane component of the sec protein-translocation machinery, secG YP_007802.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_007808.1 similar to copper-transporting ATPase YP_007809.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_007810.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_007814.1 strongly similar to lipoprotein releasing system ATP-binding protein YP_007816.1 strongly similar to 50S ribosomal protein L33 YP_007817.1 strongly similar to O-sialoglycoprotein endopeptidase YP_007818.1 similar to 6-phosphogluconolactonase (6PGL). YP_007820.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_007821.1 similar to bumetanide-sensitive Na-K-Cl cotransporter YP_007823.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_007824.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_007826.1 similar to 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO transferase) YP_007855.1 strongly similar to L-isoaspartyl protein carboxyl methyltransferase YP_007863.1 similar to acid phosphatase YP_007864.1 Catalyzes the conversion of citrate to isocitrate YP_007870.1 strongly similar to spermidin/putrescin transport ATP-binding protein, component of ATP-transporter system YP_007871.1 strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system YP_007872.1 strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system YP_007873.1 similar to spermidine/putrescine-binding protein precursor, component of ABC transporter system YP_007876.1 similar to Mg2+ transporter YP_007877.1 strongly similar to L-serine ammonia-lyase YP_007879.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate YP_007881.1 similar to 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase) YP_007882.1 similar to shikimate kinase precursor YP_007883.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_007888.1 strongly similar to riboflavin synthase beta chain YP_007889.1 strongly similar to 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II YP_007890.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_007891.1 similar to formamidopyrimidine-DNA glycosidase YP_007892.1 strongly similar to nucleic acid-binding protein YP_007894.1 similar to outer membrane protein YP_007897.1 similar to RNase BN, tRNA processing enzyme YP_007903.1 strongly similar to rhamnosyltransferase YP_007913.1 similar to cation efflux system protein YP_007914.1 similar to glutathione-regulated potassium-efflux system protein YP_007915.1 similar to CPAF (chlamydia protease-like activity factor) YP_007926.1 similar to cationic amino acid transport protein YP_007927.1 similar to anthranilate synthase component II YP_007929.1 similar to carbonic anhydrase YP_007932.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_007934.1 similar to glucokinase YP_007942.1 similar to outer membrane lipoprotein YP_007946.1 similar to thioredoxin YP_007949.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA YP_007951.1 strongly similar to oxidoreductases YP_007952.1 strongly similar to yciF protein YP_007954.1 strongly similar to ferritin YP_007957.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_007963.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_007974.1 similar to SOS mutagenesis and repair protein UmuC YP_007975.1 strongly similar to SOS mutagenesis and repair protein UmuD YP_008020.1 similar to death on curing protein YP_008034.1 similar to sporulation initiation inhibitor protein YP_008040.1 strongly similar to adenylate kinase (EC 2.7.4.3) YP_008041.1 strongly similar to diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_008046.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_008047.1 similar to ribonuclease R YP_008057.1 similar to carbonate dehydratase, cynT YP_008059.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_008061.1 similar to o-succinylbenzoate-CoA ligase, menE YP_008062.1 similar to 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA YP_008063.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_008067.1 similar to menaquinone biosynthesis protein, menD YP_008068.1 similar to menaquinone-specific isochorismate synthase, menF YP_008071.1 similar to DNA polymerase III, delta' subunit, holB YP_008072.1 similar to thymidylate kinase, tmk YP_008073.1 negatively supercoils closed circular double-stranded DNA YP_008074.1 negatively supercoils closed circular double-stranded DNA YP_008077.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_008078.1 similar to low molecular weight protein-tyrosine-phosphatase YP_008080.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_008081.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_008082.1 similar to prolipoprotein diacylglycerol transferase YP_008083.1 similar to ferredoxin [2Fe-2S] 4 YP_008087.1 strongly similar to dihydrolipoamide dehydrogenase precursor (E3 component of pyruvate dehydrogenase multi-enzyme complex) YP_008088.1 strongly similar to dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB YP_008089.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_008092.1 similar to carboxymethylenebutenolidase YP_008095.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_008101.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate YP_008102.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_008103.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_008105.1 strongly similar to isoamylase YP_008107.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_008109.1 similar to low calcium response protein lcrH YP_008114.1 similar to Mg2+ transporter YP_008115.1 similar to Elongation factor G (EF-G), fusA YP_008120.1 similar to 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) YP_008123.1 similar to calcium-dependent protein kinase 9 YP_008124.1 strongly similar to hemolysin III YP_008131.1 similar to pyrroline-5-carboxylate reductase, proC YP_008132.1 strongly similar to peptidylprolyl isomerase II (cyclophilin A) YP_008151.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_008155.1 similar to 3-ketoacyl-acyl carrier protein reductase, fabG YP_008156.1 similar to dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein) YP_008160.1 3'-5' exonuclease of DNA polymerase III YP_008162.1 similar to transport ATP binding protein YP_008163.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_008167.1 similar to integration host factor YP_008168.1 strongly similar to tyrosine-tRNA ligase YP_008170.1 similar to hyperosmotically inducible periplasmic protein YP_008174.1 similar to ribose 5-phosphate isomerase A YP_008176.1 strongly similar to PTS phosphocarrier protein HPr YP_008177.1 similar to oligoendopeptidase F YP_008178.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_008179.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_008181.1 similar to DNA topoisomerase I YP_008182.1 similar to mannosyltransferase YP_008187.1 similar to outer membrane protein tspO YP_008188.1 strongly similar to cytochrome o ubiquinol oxidase chain II cyoA YP_008189.1 strongly similar to cytochrome o ubiquinol oxidase chain I cyoB YP_008190.1 strongly similar to cytochrome o ubiquinol oxidase chain III cyoC YP_008191.1 similar to cytochrome O ubiquinol oxidase chain IV cyoD YP_008192.1 strongly similar to heme O synthase (=protoheme IX farnesyltransferase ) cyoE YP_008210.1 similar to metalloprotease YP_008216.1 similar to ABC transporter, ATP-binding protein YP_008218.1 similar to outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump YP_008219.1 similar to 7-dehydrocholesterol reductase YP_008220.1 This protein performs the mismatch recognition step during the DNA repair process YP_008224.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_008227.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_008234.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_008235.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein YP_008236.1 similar to dGTP pyrophosphohydrolase, mutT YP_008237.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP. YP_008239.1 similar to glutamate-ammonia ligase (=glutamine synthetase) type III YP_008242.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_008243.1 similar to sigma regulatory factor YP_008244.1 similar to excinuclease ABC chain A YP_008246.1 similar to UDP-N-acetylmuramate-alanine ligase murC YP_008247.1 similar to UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG YP_008248.1 similar to cell division protein ftsW YP_008249.1 similar to muropeptidase (autolysin) YP_008250.1 similar to UDP-N-acetylmuramoylalanine-D-glutamate ligase murD YP_008251.1 similar to phospho-N-acetylmuramoyl-pentapeptide-transferase mraY YP_008252.1 similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate -D-alanyl-D-alanine-ligase murF YP_008254.1 similar to eucaryotic stearoyl-CoA 9-desaturase YP_008255.1 similar to virulence protein ipgD (Shigella flexneri plasmid pINV) YP_008258.1 strongly similar to heat shock protein GroEL YP_008261.1 similar to phosphoglucomutase/phosphomannomutase YP_008263.1 similar to sialic acid synthase YP_008264.1 similar to ATP-dependent RNA helicase YP_008268.1 similar to SOS response regulator lexA YP_008269.1 similar to CDPdiacylglycerol-serine O-phosphatidyltransferase YP_008284.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_008290.1 similar to serine proteinase YP_008296.1 strongly similar to succinate-CoA ligase (ADP-forming) alpha chain YP_008297.1 strongly similar to succinate-CoA ligase (ADP-forming) beta chain YP_008298.1 strongly similar to signal recognition particle YP_008301.1 similar to UDP-glucose 4-epimerase YP_008304.1 similar to tyrosine-specific transport protein YP_008305.1 strongly similar to glutamine-fructose-6-phosphate transaminase (isomerizing) YP_008306.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_008307.1 similar to Poly(A) polymerase YP_008309.1 similar to dolichol-phosphate mannosyltransferase YP_008311.2 similar to lipid A-disaccharide synthase YP_008313.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_008314.2 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_008316.1 similar to ribonuclease G (axial filament protein) YP_008317.1 similar to glycerol-3-phosphate acyltransferase YP_008323.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_008324.1 similar to 4-amino-4-deoxychorismate lyase YP_008326.1 similar to para-aminobenzoate synthase component I YP_008330.1 strongly similar to peptide chain release factor RF-2 YP_008332.1 similar to ABC transporter ATP-binding protein YP_008333.1 similar to thioredoxin peroxidase YP_008335.1 similar to aminoglycoside N6'-acetyltransferase YP_008337.1 strongly similar to 3-methyladenine-DNA glycosylase I YP_008342.1 similar to ADP/ATP translocase YP_008343.1 similar to arsenate reductase YP_008347.1 strongly similar to ribonucleoside-diphosphate reductase large chain YP_008348.1 strongly similar to ribonucleoside-diphosphate reductase small chain YP_008361.1 strongly similar to acetate kinase YP_008363.1 strongly similar to two-component response regulator YP_008364.1 similar to two-component sensor histidine kinase YP_008366.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_008368.1 similar to glycosyltransferase YP_008370.1 GTP; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_008371.1 strongly similar to rod shape-determining protein mreB YP_008374.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_008375.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_008376.1 binds and unfolds substrates as part of the ClpXP protease YP_008383.1 similar to low calcium response protein H YP_008385.1 similar to low calcium response protein H YP_008393.1 similar to UDPgalactose-glucose galactosyltransferase YP_008396.1 strongly similar to type III secretion pathway protein sctN YP_008399.1 similar to flagellar motor switch protein (= type III secretion translocase SctQ) YP_008400.1 similar to serine/threonine protein kinase YP_008422.1 similar to F pilus assembly protein traE YP_008424.1 similar to F pilus assembly protein traB YP_008429.1 similar to inner-membrane protein traC YP_008430.1 similar to F pilus assembly protein traF YP_008431.1 similar to F pilus assembly protein traW YP_008432.1 similar to F pilus assembly protein trbC YP_008433.1 similar to F pilus assembly protein traU YP_008436.1 similar to conjugative transfer protein traN precursor YP_008437.1 similar to F pilus assembly protein traF YP_008438.1 similar to F pilus assembly protein traH YP_008439.1 similar to conjugative transfer protein traG YP_008440.1 similar to conjugative transfer protein traD YP_008455.1 strongly similar to doc (death on cure) protein of bacteriophage P1 YP_008468.1 strongly similar to resolvase YP_008469.1 strongly similar to transposase, partial length YP_008470.1 strongly similar to transposase, partial length YP_008472.1 strongly similar to doc (death on cure) protein of bacteriophage P1 YP_008474.1 similar to component D of type II secretion pathway YP_008477.1 similar to sulfate transport protein YP_008484.1 similar to heat shock protein 70, dnaK YP_008485.1 strongly similar to alanine dehydrogenase YP_008486.1 similar to chromosome segregation SMC protein YP_008487.2 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_008489.1 catalyzes the removal of amino acids from the N termini of peptides YP_008495.1 similar to eucaryotic NAD-specific glutamate dehydrogenase YP_008496.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_008497.1 strongly similar to heat shock protein GrpE YP_008498.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_008501.1 strongly similar to oligo/dipeptide-binding protein oppA YP_008502.1 strongly similar to oligo/dipeptide ABC transporter (permease) oppB YP_008503.1 strongly similar to oligo/dipeptide ABC transporter (permease) oppC YP_008504.1 strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppD YP_008505.1 strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppF YP_008510.1 strongly similar to endopeptidase ATP-binding chain clpC YP_008511.1 similar to protoporphyrinogen oxidase YP_008512.1 strongly similar to uroporphyrinogen decarboxylase YP_008513.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_008518.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_008519.1 similar to periplasmic immunogenic protein YP_008520.1 strongly similar to transcription-repair coupling factor mfd YP_008524.1 similar to regulatory protein lcrH and chaperone sycD YP_008526.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_008528.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_008529.1 similar to lysyl-tRNA synthetase YP_008532.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_008533.1 strongly similar to yabJ YP_008534.1 molecular chaperone YP_008542.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_008543.1 similar to rRNA methyltransferse YP_008544.1 strongly similar to histone H1-like protein YP_008546.1 similar to biopolymer transport protein exbB YP_008547.1 similar to biopolymer transport protein exbD YP_008556.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_008557.1 similar to heat shock protein ClpB YP_008558.1 similar to ATP-dependent RNA helicase YP_008568.1 similar to ribosomal-protein-serine acetyltransferase YP_008570.1 similar to ribonuclease R YP_008571.1 similar to tylosin resistance protein YP_008572.1 strongly similar to peptide chain release factor 3 YP_008575.1 similar to inositol-1(or 4)-monophosphatase YP_008577.1 similar to blue fluorescent protein YP_008578.1 similar to protein involved in tRNA-dihydrouridine synthesis YP_008586.1 similar to bifunctional protein involved in LPS core biosynthesis, hdlE YP_008587.1 similar to ADP-D-beta-D-heptose epimerase, hldD YP_008588.1 strongly similar to isopentenyl monophosphate kinase (IPK) YP_008589.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_008590.1 strongly similar to ribosomal protein S18 YP_008591.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_008592.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_008593.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_008594.1 strongly similar to phosphoribosyl pyrophosphate synthetase (PRPP) YP_008595.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_008596.1 similar to phosphatidylglycerophosphate synthase (PGP synthase) YP_008597.1 similar to D-alanine/glycine transport protein, sodium-dependent YP_008600.1 strongly similar to ATP-dependent DNA helicase, mutU YP_008603.1 strongly similar to 50S ribosomal protein L34 YP_008604.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_008605.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_008622.1 similar to transcription termination factor, nusB YP_008623.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_008625.1 similar to folylpolyglutamate synthase YP_008628.1 similar to cytochrome bd-I oxidase subunit II YP_008629.1 similar to cytochrome bd-I oxidase subunit I YP_008631.1 similar to dihydropteroate synthase YP_008635.1 strongly similar to pyruvate kinase YP_008640.1 strongly similar to excinuclease ABC subunit A, uvrA YP_008645.1 similar to mutT protein YP_008653.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_008655.1 similar to D-alanine/glycine transport protein, sodium-dependent YP_008656.1 similar to D-alanine/glycine transport protein, sodium-dependent YP_008657.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_008659.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_008662.1 similar to o-succinylbenzoate synthase II, menC YP_008666.1 similar to H+-transporting two-sector ATPase (epsilon chain, atpC) YP_008667.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_008668.1 similar to H+-transporting two-sector ATPase (gamma chain, atpG) YP_008669.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_008670.1 similar to H+-transporting two-sector ATPase (delta chain, atpH) YP_008671.1 similar to H+-transporting two-sector ATPase (chain b, atpF) YP_008672.1 strongly similar to H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE) YP_008673.1 similar to H+-transporting two-sector ATPase (chain a, atpB) YP_008675.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_008676.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel. YP_008677.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex YP_008678.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_008679.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex YP_008681.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex YP_008690.1 Maintains the balance of metabolites in the pentose-phosphate pathway YP_008694.1 strongly similar to UDPglucose 6-dehydrogenase YP_008695.1 strongly similar to farnesyltranstransferase YP_008696.1 strongly similar to exopolysaccharide production protein YP_008700.1 strongly similar to bifunctional protein folD YP_008701.1 similar to Thiamine biosynthesis lipoprotein apbE precursor YP_008704.1 binds the polymerase to DNA and acts as a sliding clamp YP_008705.1 similar to DNA replication and repair protein recF YP_008706.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_008710.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_008712.1 strongly similar to thioredoxin-disulfide reductase 2 YP_008714.1 strongly similar to sodium/proline symporter YP_008716.1 carries the fatty acid chain in fatty acid biosynthesis YP_008717.1 strongly similar to 3-oxoacyl-[acyl-carrier protein] reductase, fabG YP_008718.1 similar to malonyl CoA-acyl carrier protein transacylase, fabD YP_008719.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_008723.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_008725.1 similar to outer membrane protein Omp85 YP_008727.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_008728.1 similar to phosphoprotein phosphatase YP_008730.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA YP_008731.1 strongly similar to pyruvate dehydrogenase (lipoamide), E1 component, beta chain YP_008732.1 similar to pyruvate dehydrogenase (lipoamide), E1 component, alpha chain YP_008733.1 similar to neutral amino acid (glutamate) transporter YP_008747.1 strongly similar to glutamate-1-semialdehyde 2,1-aminomutase YP_008755.1 forms a direct contact with the tRNA during translation YP_008756.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_008757.1 strongly similar to 2-methylthioadenine synthetase YP_008758.1 similar to Superoxide dismutase (Cu-Zn) YP_008759.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_008760.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_008762.1 similar to 2-methylthioadenine synthetase YP_008764.1 similar to DNA repair protein radC YP_008766.1 similar to phnP protein YP_008770.1 similar to citrate (si)-synthase YP_008771.1 catalyzes the oxidation of malate to oxaloacetate YP_008781.1 similar to Gut Q protein YP_008782.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_008784.1 similar to proton/sodium-glutamate symporter YP_008785.1 similar to tetraacyldisaccharide (lipid A) 4'-kinase YP_008786.1 strongly similar to phosphoheptose isomerase YP_008790.1 similar to 23S rRNA pseudouridine synthase YP_008791.1 similar to rRNA methylase YP_008793.1 similar to exopolyphosphatase YP_008796.1 similar to signal peptidase II (prolipoprotein signal peptidase) YP_008797.1 similar to dnaK suppressor YP_008799.1 strongly similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ Antisuppressor YP_008800.1 similar to ferric uptake regulator protein YP_008803.1 similar to small heat shock protein YP_008804.1 similar to zinc ABC transporter membrane protein YP_008805.1 strongly similar to zinc ABC transporter ATP-binding protein YP_008806.1 similar to zinc ABC transporter membrane protein YP_008808.1 similar to NADH2 dehydrogenase YP_008809.1 unwinds double stranded DNA YP_008814.1 similar to fibronectin/fibrinogen binding protein YP_008819.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_008821.1 similar to sodium/pantothenate symporter (pantothenate permease) YP_008824.1 similar to beta-N-acetylglucosaminidase YP_008833.1 similar to DNA-3-methyladenine glycosidase II YP_008834.1 similar to methylated-DNA-[protein]-cysteine S-methyltransferase YP_008835.1 similar to histone H1-like protein YP_008837.1 similar to lipoate-protein ligase YP_008838.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_008840.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_008841.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_008842.1 similar to succinate dehydrogenase cytochrome b558 YP_008843.1 similar to deoxyribonuclease TatD YP_008844.1 similar to thiol-disulfide interchange protein YP_008846.1 similar to TolQ protein YP_008847.1 similar to TolR protein YP_008848.1 similar to tolA protein of Tol-Pal system YP_008849.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_008850.1 strongly similar to peptidoglycan-associated lipoprotein precursor (pal) YP_008852.1 strongly similar to glutamate racemase YP_008854.1 similar to two-component response regulator phoP YP_008868.1 similar to phosphoglycerate mutase YP_008873.1 similar to arginine kinase YP_008875.1 similar to ribosome recycling factor (ribosome releasing factor) YP_008876.1 strongly similar to uridylate kinase YP_008877.1 similar to procollagen-lysine 5-dioxygenase YP_008879.1 similar to X-Pro dipeptidase YP_008880.1 similar to two-component sensor histidine kinase phoR YP_008895.1 similar to protein of the general secretion pathway YP_008896.1 strongly similar to protein of the general secretion pathway YP_008897.1 similar to protein of the general secretion pathway YP_008900.1 similar to RNA polymerase sigma-54 factor (sigma-N) YP_008924.1 strongly similar to endonuclease G, mitochondrial precursor YP_008950.1 strongly similar to metalloproteinase YP_008957.1 similar to metalloproteinase YP_008964.1 similar to metalloproteinase YP_008974.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_008976.1 similar to cytochrome-c oxidase fixO chain YP_008977.1 similar to cytochrome-c oxidase fixN chain YP_008982.1 similar to transaldolase YP_008994.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_008995.1 similar to geranyltranstransferase YP_008996.1 similar to UDP-N-acetylglucosamine diphosphorylase YP_008997.1 similar to 23S rRNA (Uracil-5-)-methyltransferase YP_008998.1 strongly similar to mgtC protein YP_009011.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_009013.1 similar to partition protein YP_009014.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)