-- dump date 20140619_024837 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_007000.1 46445635 2780984 complement(123..338) 1 NC_005861.1 hypothetical protein 338 2780984 pc0001 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007000.1 123 R 264201 CDS YP_007001.1 46445636 2780985 462..746 1 NC_005861.1 hypothetical protein 746 2780985 pc0002 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007001.1 462 D 264201 CDS YP_007002.1 46445637 2780986 1055..4024 1 NC_005861.1 hypothetical protein 4024 2780986 pc0003 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007002.1 1055 D 264201 CDS YP_007003.1 46445638 2779763 4428..5840 1 NC_005861.1 hypothetical protein 5840 2779763 pc0004 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007003.1 4428 D 264201 CDS YP_007004.1 46445639 2779841 complement(5907..8303) 1 NC_005861.1 phosphoketolase 8303 2779841 pc0005 Candidatus Protochlamydia amoebophila UWE25 phosphoketolase YP_007004.1 5907 R 264201 CDS YP_007005.1 46445640 2779842 complement(9037..9249) 1 NC_005861.1 hypothetical protein 9249 2779842 pc0006 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007005.1 9037 R 264201 CDS YP_007006.1 46445641 2779488 complement(9395..11098) 1 NC_005861.1 hypothetical protein 11098 2779488 pc0007 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007006.1 9395 R 264201 CDS YP_007007.1 46445642 2779803 11759..15346 1 NC_005861.1 similar to exodeoxyribonuclease V gamma chain; exodeoxyribonuclease V gamma chain 15346 recC 2779803 recC Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease V gamma chain YP_007007.1 11759 D 264201 CDS YP_007008.1 46445643 2779802 15358..18858 1 NC_005861.1 similar to exodeoxyribonuclease V beta chain; exodeoxyribonuclease V beta chain 18858 recB 2779802 recB Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease V beta chain YP_007008.1 15358 D 264201 CDS YP_007009.1 46445644 2781074 18855..20723 1 NC_005861.1 similar to exodeoxyribonuclease V alpha chain recD; exodeoxyribonuclease V alpha chain recD 20723 recD 2781074 recD Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease V alpha chain recD YP_007009.1 18855 D 264201 CDS YP_007010.1 46445645 2779489 21414..21608 1 NC_005861.1 hypothetical protein 21608 2779489 pc0011 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007010.1 21414 D 264201 CDS YP_007011.1 46445646 2780919 complement(21646..23628) 1 NC_005861.1 hypothetical protein 23628 2780919 pc0012 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007011.1 21646 R 264201 CDS YP_007012.1 46445647 2780365 23912..25006 1 NC_005861.1 similar to substrate-binding protein of aliphatic sulfonate ABC transporter; substrate-binding protein of aliphatic sulfonate ABC transporter 25006 ssuA 2780365 ssuA Candidatus Protochlamydia amoebophila UWE25 substrate-binding protein of aliphatic sulfonate ABC transporter YP_007012.1 23912 D 264201 CDS YP_007013.1 46445648 2780366 24993..25784 1 NC_005861.1 strongly similar to ATP-binding component of ABC transporters; ABC transporter ATP-binding protein 25784 ssuB 2780366 ssuB Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_007013.1 24993 D 264201 CDS YP_007014.1 46445649 2780367 25781..26557 1 NC_005861.1 similar to integral membrane components of the ABC transporters; integral membrane components of the ABC transporters 26557 ssuC 2780367 ssuC Candidatus Protochlamydia amoebophila UWE25 integral membrane components of the ABC transporters YP_007014.1 25781 D 264201 CDS YP_007015.1 46445650 2780378 complement(26732..28063) 1 NC_005861.1 similar to bifunctional protein UDP-N-acetylglucosamine pyrophosphorylases, Glucosamine-1-phosphate N-acetyltransferase; bifunctional protein UDP-N-acetylglucosamine pyrophosphorylase, glucosamine-1-phosphate N-acetyltransferase 28063 glmU 2780378 glmU Candidatus Protochlamydia amoebophila UWE25 bifunctional protein UDP-N-acetylglucosamine pyrophosphorylase, glucosamine-1-phosphate N-acetyltransferase YP_007015.1 26732 R 264201 CDS YP_007016.1 46445651 2780529 complement(28522..29571) 1 NC_005861.1 similar to ADP-heptose--lipopolysaccharide heptosyltransferase II; ADP-heptose--lipopolysaccharide heptosyltransferase II 29571 rfaF 2780529 rfaF Candidatus Protochlamydia amoebophila UWE25 ADP-heptose--lipopolysaccharide heptosyltransferase II YP_007016.1 28522 R 264201 CDS YP_007017.1 46445652 2780920 29961..31583 1 NC_005861.1 hypothetical protein 31583 2780920 pc0018 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007017.1 29961 D 264201 CDS YP_007018.1 46445653 2779417 31580..32086 1 NC_005861.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 32086 ruvC 2779417 ruvC Candidatus Protochlamydia amoebophila UWE25 Holliday junction resolvase YP_007018.1 31580 D 264201 CDS YP_007019.1 46445654 2779576 32105..32710 1 NC_005861.1 strongly similar to Holliday junction DNA helicase; Holliday junction DNA helicase 32710 ruvA 2779576 ruvA Candidatus Protochlamydia amoebophila UWE25 Holliday junction DNA helicase YP_007019.1 32105 D 264201 CDS YP_007020.1 46445655 2780893 complement(32733..33374) 1 NC_005861.1 strongly similar to endonuclease III (UV endonuclease); endonuclease III (UV endonuclease) 33374 nth 2780893 nth Candidatus Protochlamydia amoebophila UWE25 endonuclease III (UV endonuclease) YP_007020.1 32733 R 264201 CDS YP_007021.1 46445656 2779712 complement(33359..34735) 1 NC_005861.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 34735 trmE 2779712 trmE Candidatus Protochlamydia amoebophila UWE25 tRNA modification GTPase TrmE YP_007021.1 33359 R 264201 CDS YP_007022.1 46445657 2779791 34867..35784 1 NC_005861.1 similar to phosphatidylserine decarboxylase proenzyme; phosphatidylserine decarboxylase proenzyme 35784 psdD 2779791 psdD Candidatus Protochlamydia amoebophila UWE25 phosphatidylserine decarboxylase proenzyme YP_007022.1 34867 D 264201 CDS YP_007023.1 46445658 2781141 complement(35903..36460) 1 NC_005861.1 strongly similar to proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA); proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA) 36460 ahpC 2781141 ahpC Candidatus Protochlamydia amoebophila UWE25 proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA) YP_007023.1 35903 R 264201 CDS YP_007024.1 46445659 2779986 complement(36689..37321) 1 NC_005861.1 hypothetical protein 37321 2779986 pc0025 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007024.1 36689 R 264201 CDS YP_007025.1 46445660 2781317 complement(37531..42066) 1 NC_005861.1 hypothetical protein 42066 2781317 pc0026 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007025.1 37531 R 264201 CDS YP_007026.1 46445661 2779498 42300..43094 1 NC_005861.1 similar to ribosomal protein L11 methyltransferase; ribosomal protein L11 methyltransferase 43094 prmA 2779498 prmA Candidatus Protochlamydia amoebophila UWE25 ribosomal protein L11 methyltransferase YP_007026.1 42300 D 264201 CDS YP_007027.1 46445662 2781318 43555..43917 1 NC_005861.1 hypothetical protein 43917 2781318 pc0028 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007027.1 43555 D 264201 CDS YP_007028.1 46445663 2781319 complement(44228..44479) 1 NC_005861.1 hypothetical protein 44479 2781319 pc0029 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007028.1 44228 R 264201 CDS YP_007029.1 46445664 2780418 complement(44688..46361) 1 NC_005861.1 strongly similar to 60 kDa chaperonin (GroEL); molecular chaperone GroEL 46361 groEl 2780418 groEl Candidatus Protochlamydia amoebophila UWE25 molecular chaperone GroEL YP_007029.1 44688 R 264201 CDS YP_007030.1 46445665 2780419 complement(46386..46733) 1 NC_005861.1 strongly similar to chaperonin groES; molecular chaperone GroES 46733 groEs 2780419 groEs Candidatus Protochlamydia amoebophila UWE25 molecular chaperone GroES YP_007030.1 46386 R 264201 CDS YP_007031.1 46445666 2779767 complement(46824..48059) 1 NC_005861.1 hypothetical protein 48059 2779767 pc0032 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007031.1 46824 R 264201 CDS YP_007032.1 46445667 2780235 48362..52009 1 NC_005861.1 similar to bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase); bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase) 52009 putA 2780235 putA Candidatus Protochlamydia amoebophila UWE25 bifunctional protein (proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase) YP_007032.1 48362 D 264201 CDS YP_007033.1 46445668 2779597 51894..54179 1 NC_005861.1 strongly similar to ATP-dependent DNA helicase; ATP-dependent DNA helicase 54179 mutD 2779597 mutD Candidatus Protochlamydia amoebophila UWE25 ATP-dependent DNA helicase YP_007033.1 51894 D 264201 CDS YP_007034.1 46445669 2780678 54446..54745 1 NC_005861.1 hypothetical protein 54745 2780678 pc0035 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007034.1 54446 D 264201 CDS YP_007035.1 46445670 2780679 complement(54770..55351) 1 NC_005861.1 hypothetical protein 55351 2780679 pc0036 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007035.1 54770 R 264201 CDS YP_007036.1 46445671 2780757 56119..57060 1 NC_005861.1 similar to metalloprotease; metalloprotease 57060 2780757 pc0037 Candidatus Protochlamydia amoebophila UWE25 metalloprotease YP_007036.1 56119 D 264201 CDS YP_007037.1 46445672 2780758 complement(57233..60094) 1 NC_005861.1 hypothetical protein 60094 2780758 pc0038 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007037.1 57233 R 264201 CDS YP_007038.1 46445673 2780759 60861..61208 1 NC_005861.1 hypothetical protein 61208 2780759 pc0039 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007038.1 60861 D 264201 CDS YP_007039.1 46445674 2781346 complement(61805..65227) 1 NC_005861.1 hypothetical protein 65227 2781346 pc0040 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007039.1 61805 R 264201 CDS YP_007040.1 46445675 2780754 complement(65317..68748) 1 NC_005861.1 hypothetical protein 68748 2780754 pc0041 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007040.1 65317 R 264201 CDS YP_007041.1 46445676 2780755 complement(68835..72272) 1 NC_005861.1 hypothetical protein 72272 2780755 pc0042 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007041.1 68835 R 264201 CDS YP_007042.1 46445677 2780756 complement(72654..73982) 1 NC_005861.1 hypothetical protein 73982 2780756 pc0043 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007042.1 72654 R 264201 CDS YP_007043.1 46445678 2781112 complement(74061..77489) 1 NC_005861.1 hypothetical protein 77489 2781112 pc0044 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007043.1 74061 R 264201 CDS YP_007044.1 46445679 2780441 complement(77584..81045) 1 NC_005861.1 hypothetical protein 81045 2780441 pc0045 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007044.1 77584 R 264201 CDS YP_007045.1 46445680 2780442 complement(81362..84643) 1 NC_005861.1 hypothetical protein 84643 2780442 pc0046 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007045.1 81362 R 264201 CDS YP_007046.1 46445681 2780298 85064..85369 1 NC_005861.1 hypothetical protein 85369 2780298 pc0047 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007046.1 85064 D 264201 CDS YP_007047.1 46445682 2780299 complement(85501..87096) 1 NC_005861.1 hypothetical protein 87096 2780299 pc0048 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007047.1 85501 R 264201 CDS YP_007048.1 46445683 2781458 complement(88089..88946) 1 NC_005861.1 hypothetical protein 88946 2781458 pc0049 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007048.1 88089 R 264201 CDS YP_007049.1 46445684 2781459 complement(89737..90789) 1 NC_005861.1 hypothetical protein 90789 2781459 pc0050 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007049.1 89737 R 264201 CDS YP_007050.1 46445685 2781435 complement(91605..95060) 1 NC_005861.1 hypothetical protein 95060 2781435 pc0051 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007050.1 91605 R 264201 CDS YP_007051.1 46445686 2779430 complement(95214..96353) 1 NC_005861.1 hypothetical protein 96353 2779430 pc0052 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007051.1 95214 R 264201 CDS YP_007052.1 46445687 2779431 complement(96456..98582) 1 NC_005861.1 hypothetical protein 98582 2779431 pc0053 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007052.1 96456 R 264201 CDS YP_007053.1 46445688 2779432 complement(98629..101544) 1 NC_005861.1 hypothetical protein 101544 2779432 pc0054 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007053.1 98629 R 264201 CDS YP_007054.1 46445689 2779915 complement(101504..102013) 1 NC_005861.1 hypothetical protein 102013 2779915 pc0055 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007054.1 101504 R 264201 CDS YP_007055.1 46445690 2781186 complement(102365..103714) 1 NC_005861.1 hypothetical protein 103714 2781186 pc0056 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007055.1 102365 R 264201 CDS YP_007056.1 46445691 2781187 complement(103747..107181) 1 NC_005861.1 hypothetical protein 107181 2781187 pc0057 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007056.1 103747 R 264201 CDS YP_007057.1 46445692 2780090 complement(107456..110497) 1 NC_005861.1 hypothetical protein 110497 2780090 pc0058 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007057.1 107456 R 264201 CDS YP_007058.1 46445693 2780091 complement(110545..113988) 1 NC_005861.1 hypothetical protein 113988 2780091 pc0059 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007058.1 110545 R 264201 CDS YP_007059.1 46445694 2780092 complement(114884..115738) 1 NC_005861.1 similar to extracellular metalloproteinase; extracellular metalloproteinase 115738 2780092 pc0060 Candidatus Protochlamydia amoebophila UWE25 extracellular metalloproteinase YP_007059.1 114884 R 264201 CDS YP_007060.1 46445695 2780396 complement(116938..117600) 1 NC_005861.1 hypothetical protein 117600 2780396 pc0061 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007060.1 116938 R 264201 CDS YP_007061.1 46445696 2779625 complement(117922..118632) 1 NC_005861.1 hypothetical protein 118632 2779625 pc0062 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007061.1 117922 R 264201 CDS YP_007062.1 46445697 2779626 complement(119309..120196) 1 NC_005861.1 hypothetical protein 120196 2779626 pc0063 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007062.1 119309 R 264201 CDS YP_007063.1 46445698 2781030 complement(121198..122781) 1 NC_005861.1 hypothetical protein 122781 2781030 pc0064 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007063.1 121198 R 264201 CDS YP_007064.1 46445699 2781031 complement(123045..123593) 1 NC_005861.1 hypothetical protein 123593 2781031 pc0065 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007064.1 123045 R 264201 CDS YP_007065.1 46445700 2781176 complement(123545..124453) 1 NC_005861.1 hypothetical protein 124453 2781176 pc0066 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007065.1 123545 R 264201 CDS YP_007066.1 46445701 2781177 complement(124467..125639) 1 NC_005861.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 125639 2781177 pc0067 Candidatus Protochlamydia amoebophila UWE25 rod shape-determining protein MreC YP_007066.1 124467 R 264201 CDS YP_007067.1 46445702 2781050 complement(125921..126103) 1 NC_005861.1 hypothetical protein 126103 2781050 pc0068 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007067.1 125921 R 264201 CDS YP_007068.2 161611311 2779794 complement(126400..127596) 1 NC_005861.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 127596 aspC 2779794 aspC Candidatus Protochlamydia amoebophila UWE25 aromatic amino acid aminotransferase YP_007068.2 126400 R 264201 CDS YP_007069.1 46445704 2779760 complement(127768..128007) 1 NC_005861.1 hypothetical protein 128007 2779760 pc0070 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007069.1 127768 R 264201 CDS YP_007070.1 46445705 2780467 complement(128482..131085) 1 NC_005861.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I/SWI domain fusion protein 131085 topA 2780467 topA Candidatus Protochlamydia amoebophila UWE25 DNA topoisomerase I/SWI domain fusion protein YP_007070.1 128482 R 264201 CDS YP_007071.1 46445706 2780695 complement(131167..132258) 1 NC_005861.1 similar to protein required for chromosomal DNA transformation; protein required for chromosomal DNA transformation 132258 dprA 2780695 dprA Candidatus Protochlamydia amoebophila UWE25 protein required for chromosomal DNA transformation YP_007071.1 131167 R 264201 CDS YP_007072.1 46445707 2779772 complement(132397..133455) 1 NC_005861.1 similar to 3-dehydroquinate synthase; 3-dehydroquinate synthase 133455 aroB 2779772 aroB Candidatus Protochlamydia amoebophila UWE25 3-dehydroquinate synthase YP_007072.1 132397 R 264201 CDS YP_007073.1 46445708 2779761 complement(133606..133851) 1 NC_005861.1 hypothetical protein 133851 2779761 pc0074 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007073.1 133606 R 264201 CDS YP_007074.1 46445709 2779762 133845..134090 1 NC_005861.1 hypothetical protein 134090 2779762 pc0075 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007074.1 133845 D 264201 CDS YP_007075.1 46445710 2781457 complement(134284..135036) 1 NC_005861.1 hypothetical protein 135036 2781457 pc0076 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007075.1 134284 R 264201 CDS YP_007076.1 46445711 2780863 135333..136115 1 NC_005861.1 similar to chromosome partitioning protein; chromosome partitioning protein 136115 parB 2780863 parB Candidatus Protochlamydia amoebophila UWE25 chromosome partitioning protein YP_007076.1 135333 D 264201 CDS YP_007077.1 46445712 2779825 136133..138322 1 NC_005861.1 similar to copper-transporting ATPase; copper-transporting ATPase 138322 copA 2779825 copA Candidatus Protochlamydia amoebophila UWE25 copper-transporting ATPase YP_007077.1 136133 D 264201 CDS YP_007078.1 46445713 2779554 138297..139280 1 NC_005861.1 strongly similar to UDP-glucuronat epimerase; UDP-glucuronat epimerase 139280 2779554 pc0079 Candidatus Protochlamydia amoebophila UWE25 UDP-glucuronat epimerase YP_007078.1 138297 D 264201 CDS YP_007079.1 46445714 2779555 139323..139547 1 NC_005861.1 hypothetical protein 139547 2779555 pc0080 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007079.1 139323 D 264201 CDS YP_007080.1 46445715 2780760 139592..140242 1 NC_005861.1 hypothetical protein 140242 2780760 pc0081 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007080.1 139592 D 264201 CDS YP_007081.1 46445716 2780761 complement(140790..142289) 1 NC_005861.1 hypothetical protein 142289 2780761 pc0082 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007081.1 140790 R 264201 CDS YP_007082.1 46445717 2780166 complement(142294..143295) 1 NC_005861.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 143295 gpsA 2780166 gpsA Candidatus Protochlamydia amoebophila UWE25 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_007082.1 142294 R 264201 CDS YP_007083.1 46445718 2780762 complement(143526..144194) 1 NC_005861.1 hypothetical protein 144194 2780762 pc0084 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007083.1 143526 R 264201 CDS YP_007084.1 46445719 2780888 complement(144259..144858) 1 NC_005861.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 144858 2780888 pc0085 Candidatus Protochlamydia amoebophila UWE25 deoxyribonucleotide triphosphate pyrophosphatase YP_007084.1 144259 R 264201 CDS YP_007085.1 46445720 2780253 complement(145079..147250) 1 NC_005861.1 contains N-terminal domain of unknown function fused to transcription elongation factor; GreA is necessary for efficient RNA polymerization through arresting sites; cleaves the nascent transcript and allows resumption of transcription elongation; transcript cleavage factor/unknown domain fusion protein 147250 2780253 pc0086 Candidatus Protochlamydia amoebophila UWE25 transcript cleavage factor/unknown domain fusion protein YP_007085.1 145079 R 264201 CDS YP_007086.1 46445721 2780254 147770..148210 1 NC_005861.1 hypothetical protein 148210 2780254 pc0087 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007086.1 147770 D 264201 CDS YP_007087.1 46445722 2779653 148548..149741 1 NC_005861.1 hypothetical protein 149741 2779653 pc0088 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007087.1 148548 D 264201 CDS YP_007088.1 46445723 2779540 149879..150937 1 NC_005861.1 similar to A/G-specific adenine glycosylase, mutY; A/G-specific adenine glycosylase 150937 mutY 2779540 mutY Candidatus Protochlamydia amoebophila UWE25 A/G-specific adenine glycosylase YP_007088.1 149879 D 264201 CDS YP_007089.1 46445724 2779654 151176..151373 1 NC_005861.1 hypothetical protein 151373 2779654 pc0090 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007089.1 151176 D 264201 CDS YP_007090.1 46445725 2780734 complement(151673..152161) 1 NC_005861.1 similar to bacterioferritin comigratory protein (BCP); bacterioferritin comigratory protein (BCP) 152161 bcp 2780734 bcp Candidatus Protochlamydia amoebophila UWE25 bacterioferritin comigratory protein (BCP) YP_007090.1 151673 R 264201 CDS YP_007091.1 46445726 2779719 152383..153417 1 NC_005861.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 153417 hemB 2779719 hemB Candidatus Protochlamydia amoebophila UWE25 delta-aminolevulinic acid dehydratase YP_007091.1 152383 D 264201 CDS YP_007092.1 46445727 2781380 complement(153464..155626) 1 NC_005861.1 hypothetical protein 155626 2781380 pc0093 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007092.1 153464 R 264201 CDS YP_007093.1 46445728 2779542 155866..157098 1 NC_005861.1 similar to Na(+)/H(+) antiporter; Na(+)/H(+) antiporter 157098 napA 2779542 napA Candidatus Protochlamydia amoebophila UWE25 Na(+)/H(+) antiporter YP_007093.1 155866 D 264201 CDS YP_007094.1 46445729 2780503 157177..158577 1 NC_005861.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 158577 nqrA 2780503 nqrA Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit A YP_007094.1 157177 D 264201 CDS YP_007095.1 46445730 2779618 complement(158570..159394) 1 NC_005861.1 strongly similar to ATP binding protein, component of oligopeptide permease, oppF; ATP binding protein, component of oligopeptide permease, oppF 159394 oppF 2779618 oppF Candidatus Protochlamydia amoebophila UWE25 ATP binding protein, component of oligopeptide permease, oppF YP_007095.1 158570 R 264201 CDS YP_007096.1 46445731 2779748 complement(159391..160416) 1 NC_005861.1 strongly similar to ATP binding protein, component of oligopeptide permease, oppD; ATP binding protein, component of oligopeptide permease, oppD 160416 oppD 2779748 oppD Candidatus Protochlamydia amoebophila UWE25 ATP binding protein, component of oligopeptide permease, oppD YP_007096.1 159391 R 264201 CDS YP_007097.1 46445732 2781381 160575..161306 1 NC_005861.1 hypothetical protein 161306 2781381 pc0098 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007097.1 160575 D 264201 CDS YP_007098.1 46445733 2780421 161360..162775 1 NC_005861.1 hypothetical protein 162775 2780421 pc0099 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007098.1 161360 D 264201 CDS YP_007099.1 46445734 2781109 162813..163391 1 NC_005861.1 hypothetical protein 163391 2781109 pc0100 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007099.1 162813 D 264201 CDS YP_007100.1 46445735 2779959 complement(163541..165304) 1 NC_005861.1 similar to oligopeptide transport system permease, oppC; oligopeptide transport system permease, oppC 165304 oppC 2779959 oppC Candidatus Protochlamydia amoebophila UWE25 oligopeptide transport system permease, oppC YP_007100.1 163541 R 264201 CDS YP_007101.1 46445736 2780922 complement(165274..166770) 1 NC_005861.1 similar to dipeptide transport system permease, dppB; dipeptide transport system permease, dppB 166770 dppB 2780922 dppB Candidatus Protochlamydia amoebophila UWE25 dipeptide transport system permease, dppB YP_007101.1 165274 R 264201 CDS YP_007102.1 46445737 2779867 complement(166774..168921) 1 NC_005861.1 similar to substrate binding proteins, component of oligopeptide permease, oppA; substrate binding proteins, component of oligopeptide permease, oppA 168921 oppA 2779867 oppA Candidatus Protochlamydia amoebophila UWE25 substrate binding proteins, component of oligopeptide permease, oppA YP_007102.1 166774 R 264201 CDS YP_007103.1 46445738 2781110 complement(168921..169613) 1 NC_005861.1 hypothetical protein 169613 2781110 pc0104 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007103.1 168921 R 264201 CDS YP_007104.1 46445739 2781111 complement(169613..169822) 1 NC_005861.1 hypothetical protein 169822 2781111 pc0105 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007104.1 169613 R 264201 CDS YP_007105.1 46445740 2781228 169878..172481 1 NC_005861.1 strongly similar to glycogen phosphorylase; glycogen phosphorylase 172481 glgP 2781228 glgP Candidatus Protochlamydia amoebophila UWE25 glycogen phosphorylase YP_007105.1 169878 D 264201 CDS YP_007106.1 46445741 2781434 complement(172510..174561) 1 NC_005861.1 hypothetical protein 174561 2781434 pc0107 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007106.1 172510 R 264201 CDS YP_007107.1 46445742 2780497 complement(174928..175764) 1 NC_005861.1 similar to amino acid ABC transporter, periplasmic amino acid-binding protein; amino acid ABC transporter substrate-binding protein 175764 fliY 2780497 fliY Candidatus Protochlamydia amoebophila UWE25 amino acid ABC transporter substrate-binding protein YP_007107.1 174928 R 264201 CDS YP_007108.1 46445743 2781227 175951..177369 1 NC_005861.1 strongly similar to glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 177369 glgC 2781227 glgC Candidatus Protochlamydia amoebophila UWE25 glucose-1-phosphate adenylyltransferase YP_007108.1 175951 D 264201 CDS YP_007109.1 46445744 2780656 177439..178206 1 NC_005861.1 hypothetical protein 178206 2780656 pc0110 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007109.1 177439 D 264201 CDS YP_007110.1 46445745 2779703 complement(178729..180741) 1 NC_005861.1 similar to ribonucleoside triphosphate reductase; ribonucleoside triphosphate reductase 180741 nrdD 2779703 nrdD Candidatus Protochlamydia amoebophila UWE25 ribonucleoside triphosphate reductase YP_007110.1 178729 R 264201 CDS YP_007111.1 46445746 2780657 complement(180908..181120) 1 NC_005861.1 hypothetical protein 181120 2780657 pc0112 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007111.1 180908 R 264201 CDS YP_007112.1 46445747 2779693 complement(181113..182096) 1 NC_005861.1 hypothetical protein 182096 2779693 pc0113 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007112.1 181113 R 264201 CDS YP_007113.1 46445748 2780733 complement(182335..183090) 1 NC_005861.1 similar to batE protein; batE protein 183090 batE 2780733 batE Candidatus Protochlamydia amoebophila UWE25 batE protein YP_007113.1 182335 R 264201 CDS YP_007114.1 46445749 2779694 complement(183087..183464) 1 NC_005861.1 hypothetical protein 183464 2779694 pc0115 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007114.1 183087 R 264201 CDS YP_007115.1 46445750 2779695 complement(183508..185280) 1 NC_005861.1 hypothetical protein 185280 2779695 pc0116 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007115.1 183508 R 264201 CDS YP_007116.1 46445751 2780846 complement(185231..186907) 1 NC_005861.1 hypothetical protein 186907 2780846 pc0117 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007116.1 185231 R 264201 CDS YP_007117.1 46445752 2781077 complement(186931..188001) 1 NC_005861.1 hypothetical protein 188001 2781077 pc0118 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007117.1 186931 R 264201 CDS YP_007118.1 46445753 2780732 complement(188164..189252) 1 NC_005861.1 similar to batA protein; batA protein 189252 batA 2780732 batA Candidatus Protochlamydia amoebophila UWE25 batA protein YP_007118.1 188164 R 264201 CDS YP_007119.1 46445754 2781156 189477..190094 1 NC_005861.1 similar to protein involved in cell wall biosynthesis, morphogenesis and cell division; protein involved in cell wall biosynthesis, morphogenesis and cell division 190094 cicA 2781156 cicA Candidatus Protochlamydia amoebophila UWE25 protein involved in cell wall biosynthesis, morphogenesis and cell division YP_007119.1 189477 D 264201 CDS YP_007120.1 46445755 2781078 complement(190212..192869) 1 NC_005861.1 hypothetical protein 192869 2781078 pc0121 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007120.1 190212 R 264201 CDS YP_007121.1 46445756 2780076 193247..193447 1 NC_005861.1 hypothetical protein 193447 2780076 pc0122 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007121.1 193247 D 264201 CDS YP_007122.1 46445757 2780530 193531..194418 1 NC_005861.1 strongly similar to glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase), rfbA; glucose-1-phosphate thymidylyltransferase 194418 rfbA 2780530 rfbA Candidatus Protochlamydia amoebophila UWE25 glucose-1-phosphate thymidylyltransferase YP_007122.1 193531 D 264201 CDS YP_007123.1 46445758 2780818 194405..194959 1 NC_005861.1 strongly similar to dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC 194959 rfbC 2780818 rfbC Candidatus Protochlamydia amoebophila UWE25 dTDP-4-dehydrorhamnose 3,5-epimerase, rfbC YP_007123.1 194405 D 264201 CDS YP_007124.1 46445759 2780819 194956..195840 1 NC_005861.1 similar to dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD; dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD 195840 rfbD 2780819 rfbD Candidatus Protochlamydia amoebophila UWE25 dTDP-4-keto-L-rhamnose reductase, (TDP-rhamnose synthetase), rfbD YP_007124.1 194956 D 264201 CDS YP_007125.1 46445760 2780531 195843..196901 1 NC_005861.1 strongly similar to dTDP-glucose 4,6-dehydratase, rfbB; dTDP-glucose 4,6-dehydratase, rfbB 196901 rfbB 2780531 rfbB Candidatus Protochlamydia amoebophila UWE25 dTDP-glucose 4,6-dehydratase, rfbB YP_007125.1 195843 D 264201 CDS YP_007126.1 46445761 2779980 complement(196933..198474) 1 NC_005861.1 similar to multidrug resistance membrane translocase, emrB; multidrug resistance membrane translocase, emrB 198474 emrB 2779980 emrB Candidatus Protochlamydia amoebophila UWE25 multidrug resistance membrane translocase, emrB YP_007126.1 196933 R 264201 CDS YP_007127.1 46445762 2781180 complement(198476..199675) 1 NC_005861.1 strongly similar to multidrug resistance protein, emrA; multidrug resistance protein, emrA 199675 emrA 2781180 emrA Candidatus Protochlamydia amoebophila UWE25 multidrug resistance protein, emrA YP_007127.1 198476 R 264201 CDS YP_007128.1 46445763 2780077 complement(199698..200579) 1 NC_005861.1 hypothetical protein 200579 2780077 pc0129 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007128.1 199698 R 264201 CDS YP_007129.1 46445764 2780243 complement(200655..201104) 1 NC_005861.1 hypothetical protein 201104 2780243 pc0130 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007129.1 200655 R 264201 CDS YP_007130.1 46445765 2780182 complement(201101..201832) 1 NC_005861.1 similar to ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA; ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA 201832 rluA 2780182 rluA Candidatus Protochlamydia amoebophila UWE25 ribosomal large subunit pseudouridine synthase (pseudouridylate synthase), rluA YP_007130.1 201101 R 264201 CDS YP_007131.1 46445766 2780858 202481..202771 1 NC_005861.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 202771 rpsT 2780858 rpsT Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S20 YP_007131.1 202481 D 264201 CDS YP_007132.1 46445767 2780244 202912..204597 1 NC_005861.1 similar to acylase and diesterase; acylase and diesterase 204597 2780244 pc0133 Candidatus Protochlamydia amoebophila UWE25 acylase and diesterase YP_007132.1 202912 D 264201 CDS YP_007133.1 46445768 2780750 204546..205289 1 NC_005861.1 hypothetical protein 205289 2780750 pc0134 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007133.1 204546 D 264201 CDS YP_007134.1 46445769 2781188 205319..208783 1 NC_005861.1 hypothetical protein 208783 2781188 pc0135 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007134.1 205319 D 264201 CDS YP_007135.1 46445770 2779568 209069..209887 1 NC_005861.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 209887 rpsB 2779568 rpsB Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S2 YP_007135.1 209069 D 264201 CDS YP_007136.2 161611310 2781312 209889..210737 1 NC_005861.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 210737 tsf 2781312 tsf Candidatus Protochlamydia amoebophila UWE25 elongation factor Ts YP_007136.2 209889 D 264201 CDS YP_007137.1 46445772 2781189 211196..212272 1 NC_005861.1 hypothetical protein 212272 2781189 pc0138 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007137.1 211196 D 264201 CDS YP_007138.1 46445773 2779598 complement(212429..214387) 1 NC_005861.1 similar to methyl-directed mismatch repair (MMR) protein, mutL; methyl-directed mismatch repair (MMR) protein, mutL 214387 mutL 2779598 mutL Candidatus Protochlamydia amoebophila UWE25 methyl-directed mismatch repair (MMR) protein, mutL YP_007138.1 212429 R 264201 CDS YP_007139.1 46445774 2779822 214667..215905 1 NC_005861.1 similar to poly A polymerase; poly A polymerase 215905 pcnB 2779822 pcnB Candidatus Protochlamydia amoebophila UWE25 poly A polymerase YP_007139.1 214667 D 264201 CDS YP_007140.1 46445775 2781190 215902..216651 1 NC_005861.1 hypothetical protein 216651 2781190 pc0141 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007140.1 215902 D 264201 CDS YP_007141.1 46445776 2781320 216786..217850 1 NC_005861.1 hypothetical protein 217850 2781320 pc0142 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007141.1 216786 D 264201 CDS YP_007142.1 46445777 2779981 217864..219168 1 NC_005861.1 strongly similar to phosphopyruvate hydratase (enolase); phosphopyruvate hydratase 219168 eno 2779981 eno Candidatus Protochlamydia amoebophila UWE25 phosphopyruvate hydratase YP_007142.1 217864 D 264201 CDS YP_007143.1 46445778 2779407 219175..219570 1 NC_005861.1 hypothetical protein 219570 2779407 pc0144 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007143.1 219175 D 264201 CDS YP_007144.1 46445779 2779408 complement(219609..220355) 1 NC_005861.1 hypothetical protein 220355 2779408 pc0145 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007144.1 219609 R 264201 CDS YP_007145.1 46445780 2780020 220752..223814 1 NC_005861.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 223814 secA 2780020 secA Candidatus Protochlamydia amoebophila UWE25 preprotein translocase subunit SecA YP_007145.1 220752 D 264201 CDS YP_007146.1 46445781 2781301 complement(224003..224227) 1 NC_005861.1 hypothetical protein 224227 2781301 pc0147 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007146.1 224003 R 264201 CDS YP_007147.1 46445782 2779804 complement(224284..224895) 1 NC_005861.1 similar to aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase); aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase) 224895 aspH 2779804 aspH Candidatus Protochlamydia amoebophila UWE25 aspartyl/asparaginyl beta-hydroxylase (= peptide-aspartate beta-dioxygenase) YP_007147.1 224284 R 264201 CDS YP_007148.1 46445783 2779768 225018..226277 1 NC_005861.1 similar to arsenical pump membrane protein; arsenical pump membrane protein 226277 arsAb 2779768 arsAb Candidatus Protochlamydia amoebophila UWE25 arsenical pump membrane protein YP_007148.1 225018 D 264201 CDS YP_007149.1 46445784 2781302 complement(226364..226837) 1 NC_005861.1 hypothetical protein 226837 2781302 pc0150 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007149.1 226364 R 264201 CDS YP_007150.1 46445785 2780672 227479..228888 1 NC_005861.1 E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 228888 lpdA 2780672 lpdA Candidatus Protochlamydia amoebophila UWE25 dihydrolipoamide dehydrogenase YP_007150.1 227479 D 264201 CDS YP_007151.1 46445786 2780836 228912..229883 1 NC_005861.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 229883 lipA 2780836 lipA Candidatus Protochlamydia amoebophila UWE25 lipoyl synthase YP_007151.1 228912 D 264201 CDS YP_007152.1 46445787 2781303 229898..230818 1 NC_005861.1 hypothetical protein 230818 2781303 pc0153 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007152.1 229898 D 264201 CDS YP_007153.1 46445788 2781368 231569..232468 1 NC_005861.1 hypothetical protein 232468 2781368 pc0154 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007153.1 231569 D 264201 CDS YP_007154.1 46445789 2781256 complement(233044..234690) 1 NC_005861.1 hypothetical protein 234690 2781256 pc0155 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007154.1 233044 R 264201 CDS YP_007155.1 46445790 2781257 234900..235802 1 NC_005861.1 hypothetical protein 235802 2781257 pc0156 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007155.1 234900 D 264201 CDS YP_007156.1 46445791 2781026 235914..236117 1 NC_005861.1 hypothetical protein 236117 2781026 pc0157 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007156.1 235914 D 264201 CDS YP_007157.1 46445792 2781027 complement(236401..238191) 1 NC_005861.1 hypothetical protein 238191 2781027 pc0158 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007157.1 236401 R 264201 CDS YP_007158.1 46445793 2780538 complement(238321..239499) 1 NC_005861.1 hypothetical protein 239499 2780538 pc0159 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007158.1 238321 R 264201 CDS YP_007159.1 46445794 2779579 complement(239506..240210) 1 NC_005861.1 similar to ribosomal large chain pseudouridine synthase B; ribosomal large chain pseudouridine synthase B 240210 yjbC 2779579 yjbC Candidatus Protochlamydia amoebophila UWE25 ribosomal large chain pseudouridine synthase B YP_007159.1 239506 R 264201 CDS YP_007160.1 46445795 2780459 240480..241160 1 NC_005861.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 241160 pgmA 2780459 pgmA Candidatus Protochlamydia amoebophila UWE25 phosphoglyceromutase YP_007160.1 240480 D 264201 CDS YP_007161.1 46445796 2780456 241167..242348 1 NC_005861.1 similar to iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS; iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS 242348 nifS 2780456 nifS Candidatus Protochlamydia amoebophila UWE25 iron-sulfur cofactor synthesis protein/cysteine desulfurase nifS YP_007161.1 241167 D 264201 CDS YP_007162.1 46445797 2780539 242350..243141 1 NC_005861.1 similar to iron-sulfur cluster assembly protein nifU; iron-sulfur cluster assembly protein nifU 243141 2780539 pc0163 Candidatus Protochlamydia amoebophila UWE25 iron-sulfur cluster assembly protein nifU YP_007162.1 242350 D 264201 CDS YP_007163.1 46445798 2780577 complement(243195..243659) 1 NC_005861.1 hypothetical protein 243659 2780577 pc0164 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007163.1 243195 R 264201 CDS YP_007164.1 46445799 2781334 complement(244095..244775) 1 NC_005861.1 similar to biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional); biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional) 244775 birA 2781334 birA Candidatus Protochlamydia amoebophila UWE25 biotin-[acetyl-CoA-carboxylase] ligase/biotin repressor (bifunctional) YP_007164.1 244095 R 264201 CDS YP_007165.1 46445800 2780517 245054..246190 1 NC_005861.1 strongly similar to cell shape (rod)-determining protein; cell shape (rod)-determining protein 246190 rodA 2780517 rodA Candidatus Protochlamydia amoebophila UWE25 cell shape (rod)-determining protein YP_007165.1 245054 D 264201 CDS YP_007166.1 46445801 2779704 246205..246690 1 NC_005861.1 hypothetical protein 246690 2779704 pc0167 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007166.1 246205 D 264201 CDS YP_007167.1 46445802 2780306 246909..248099 1 NC_005861.1 similar to tyrosine/tryptophan transport protein; tyrosine/tryptophan transport protein 248099 tyrP_1 2780306 tyrP_1 Candidatus Protochlamydia amoebophila UWE25 tyrosine/tryptophan transport protein YP_007167.1 246909 D 264201 CDS YP_007168.1 46445803 2780307 248122..249321 1 NC_005861.1 similar to tyrosine/tryptophan transport protein; tyrosine/tryptophan transport protein 249321 tyrP_2 2780307 tyrP_2 Candidatus Protochlamydia amoebophila UWE25 tyrosine/tryptophan transport protein YP_007168.1 248122 D 264201 CDS YP_007169.1 46445804 2780473 249341..250402 1 NC_005861.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 250402 trpS 2780473 trpS Candidatus Protochlamydia amoebophila UWE25 tryptophanyl-tRNA synthetase YP_007169.1 249341 D 264201 CDS YP_007170.1 46445805 2779705 250492..252972 1 NC_005861.1 similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 252972 2779705 pc0171 Candidatus Protochlamydia amoebophila UWE25 O-linked N-acetylglucosamine transferase YP_007170.1 250492 D 264201 CDS YP_007171.1 46445806 2779706 253342..256755 1 NC_005861.1 similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 256755 2779706 pc0172 Candidatus Protochlamydia amoebophila UWE25 O-linked N-acetylglucosamine transferase YP_007171.1 253342 D 264201 CDS YP_007172.1 46445807 2781425 257123..260713 1 NC_005861.1 similar to O-linked N-acetylglucosamine transferase; O-linked N-acetylglucosamine transferase 260713 2781425 pc0173 Candidatus Protochlamydia amoebophila UWE25 O-linked N-acetylglucosamine transferase YP_007172.1 257123 D 264201 CDS YP_007173.1 46445808 2780840 260950..262971 1 NC_005861.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 262971 uvrB 2780840 uvrB Candidatus Protochlamydia amoebophila UWE25 excinuclease ABC subunit B YP_007173.1 260950 D 264201 CDS YP_007174.1 46445809 2780304 complement(262984..264057) 1 NC_005861.1 hypothetical protein 264057 2780304 pc0175 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007174.1 262984 R 264201 CDS YP_007175.1 46445810 2780084 complement(264440..266701) 1 NC_005861.1 similar to ATP-dependent DNA helicase dinG; ATP-dependent DNA helicase dinG 266701 dinG 2780084 dinG Candidatus Protochlamydia amoebophila UWE25 ATP-dependent DNA helicase dinG YP_007175.1 264440 R 264201 CDS YP_007176.1 46445811 2780037 complement(266766..268430) 1 NC_005861.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase sigma factor 268430 sigA 2780037 sigA Candidatus Protochlamydia amoebophila UWE25 RNA polymerase sigma factor YP_007176.1 266766 R 264201 CDS YP_007177.1 46445812 2780305 268823..269689 1 NC_005861.1 hypothetical protein 269689 2780305 pc0178 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007177.1 268823 D 264201 CDS YP_007178.1 46445813 2779896 269784..270650 1 NC_005861.1 hypothetical protein 270650 2779896 pc0179 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007178.1 269784 D 264201 CDS YP_007179.1 46445814 2779897 complement(270611..271741) 1 NC_005861.1 hypothetical protein 271741 2779897 pc0180 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007179.1 270611 R 264201 CDS YP_007180.1 46445815 2779630 complement(271746..273002) 1 NC_005861.1 strongly similar to ABC transporter ATP-binding protein wzt; ABC transporter ATP-binding protein 273002 wzt 2779630 wzt Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_007180.1 271746 R 264201 CDS YP_007181.1 46445816 2780128 complement(273010..273843) 1 NC_005861.1 strongly similar to ABC transporter protein wzm; ABC transporter 273843 wzm 2780128 wzm Candidatus Protochlamydia amoebophila UWE25 ABC transporter YP_007181.1 273010 R 264201 CDS YP_007182.1 46445817 2779898 complement(273960..274145) 1 NC_005861.1 hypothetical protein 274145 2779898 pc0183 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007182.1 273960 R 264201 CDS YP_007183.1 46445818 2780373 274184..275491 1 NC_005861.1 hypothetical protein 275491 2780373 pc0184 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007183.1 274184 D 264201 CDS YP_007184.1 46445819 2781214 complement(275537..276901) 1 NC_005861.1 hypothetical protein 276901 2781214 pc0185 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007184.1 275537 R 264201 CDS YP_007185.1 46445820 2780790 277152..278201 1 NC_005861.1 similar to polysaccharide export protein wza; polysaccharide export protein wza 278201 wza 2780790 wza Candidatus Protochlamydia amoebophila UWE25 polysaccharide export protein wza YP_007185.1 277152 D 264201 CDS YP_007186.1 46445821 2780127 278269..281214 1 NC_005861.1 similar to Tyrosine-protein kinase; tyrosine-protein kinase 281214 wzc 2780127 wzc Candidatus Protochlamydia amoebophila UWE25 tyrosine-protein kinase YP_007186.1 278269 D 264201 CDS YP_007187.1 46445822 2781215 281247..282095 1 NC_005861.1 hypothetical protein 282095 2781215 pc0188 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007187.1 281247 D 264201 CDS YP_007188.1 46445823 2779906 282385..283830 1 NC_005861.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 283830 sufB 2779906 sufB Candidatus Protochlamydia amoebophila UWE25 cysteine desulfurase YP_007188.1 282385 D 264201 CDS YP_007189.1 46445824 2779907 283938..284702 1 NC_005861.1 strongly similar to ABC transporter ATP-binding protein sufC; ABC transporter ATP-binding protein 284702 sufC 2779907 sufC Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_007189.1 283938 D 264201 CDS YP_007190.1 46445825 2779908 284663..286015 1 NC_005861.1 similar to sufD; sufD 286015 sufD 2779908 sufD Candidatus Protochlamydia amoebophila UWE25 sufD YP_007190.1 284663 D 264201 CDS YP_007191.1 46445826 2779427 286018..287250 1 NC_005861.1 strongly similar to SufS L-cysteine desulfurase/L-selenocysteine lyase; SufS L-cysteine desulfurase/L-selenocysteine lyase 287250 sufS 2779427 sufS Candidatus Protochlamydia amoebophila UWE25 SufS L-cysteine desulfurase/L-selenocysteine lyase YP_007191.1 286018 D 264201 CDS YP_007192.1 46445827 2781362 287256..288191 1 NC_005861.1 hypothetical protein 288191 2781362 pc0193 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007192.1 287256 D 264201 CDS YP_007193.1 46445828 2781363 complement(288554..289759) 1 NC_005861.1 hypothetical protein 289759 2781363 pc0194 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007193.1 288554 R 264201 CDS YP_007194.1 46445829 2780502 complement(290379..291191) 1 NC_005861.1 similar to metalloendopeptidase; metalloendopeptidase 291191 npr 2780502 npr Candidatus Protochlamydia amoebophila UWE25 metalloendopeptidase YP_007194.1 290379 R 264201 CDS YP_007195.1 46445830 2779856 complement(291426..292316) 1 NC_005861.1 similar to glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 292316 glpQ 2779856 glpQ Candidatus Protochlamydia amoebophila UWE25 glycerophosphoryl diester phosphodiesterase YP_007195.1 291426 R 264201 CDS YP_007196.1 46445831 2779439 complement(292513..292728) 1 NC_005861.1 hypothetical protein 292728 2779439 pc0197 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007196.1 292513 R 264201 CDS YP_007197.1 46445832 2779435 293086..294075 1 NC_005861.1 similar to F-box protein; F-box protein 294075 ppaB 2779435 ppaB Candidatus Protochlamydia amoebophila UWE25 F-box protein YP_007197.1 293086 D 264201 CDS YP_007198.1 46445833 2780079 294072..295085 1 NC_005861.1 similar to F-box protein; F-box protein 295085 ppaA 2780079 ppaA Candidatus Protochlamydia amoebophila UWE25 F-box protein YP_007198.1 294072 D 264201 CDS YP_007199.1 46445834 2780466 complement(295765..296607) 1 NC_005861.1 similar to type III secretion inner membrane protein SctT; type III secretion inner membrane protein SctT 296607 yscT 2780466 yscT Candidatus Protochlamydia amoebophila UWE25 type III secretion inner membrane protein SctT YP_007199.1 295765 R 264201 CDS YP_007200.1 46445835 2780667 complement(296692..296928) 1 NC_005861.1 strongly similar to type III secretion inner membrane protein SctS; type III secretion inner membrane protein SctS 296928 sctS 2780667 sctS Candidatus Protochlamydia amoebophila UWE25 type III secretion inner membrane protein SctS YP_007200.1 296692 R 264201 CDS YP_007201.1 46445836 2780465 complement(296943..297914) 1 NC_005861.1 similar to type III secretion inner membrane protein SctR; type III secretion system protein 297914 yscR 2780465 yscR Candidatus Protochlamydia amoebophila UWE25 type III secretion system protein YP_007201.1 296943 R 264201 CDS YP_007202.1 46445837 2780464 complement(297925..298596) 1 NC_005861.1 similar to type III secretion protein SctL; type III secretion system protein 298596 yscL 2780464 yscL Candidatus Protochlamydia amoebophila UWE25 type III secretion system protein YP_007202.1 297925 R 264201 CDS YP_007203.1 46445838 2779440 complement(298593..299438) 1 NC_005861.1 hypothetical protein 299438 2779440 pc0204 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007203.1 298593 R 264201 CDS YP_007204.1 46445839 2779888 complement(299465..300478) 1 NC_005861.1 similar to type III secretion protein SctJ; type III secretion protein SctJ 300478 yscJ 2779888 yscJ Candidatus Protochlamydia amoebophila UWE25 type III secretion protein SctJ YP_007204.1 299465 R 264201 CDS YP_007205.1 46445840 2781136 complement(300758..301093) 1 NC_005861.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 301093 rpsJ 2781136 rpsJ Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S10 YP_007205.1 300758 R 264201 CDS YP_007206.1 46445841 2780446 complement(301111..303198) 1 NC_005861.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 303198 fusA 2780446 fusA Candidatus Protochlamydia amoebophila UWE25 elongation factor G YP_007206.1 301111 R 264201 CDS YP_007207.1 46445842 2780383 complement(303211..303684) 1 NC_005861.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 303684 rpsG 2780383 rpsG Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S7 YP_007207.1 303211 R 264201 CDS YP_007208.1 46445843 2779588 complement(303851..304231) 1 NC_005861.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 304231 rpsL 2779588 rpsL Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S12 YP_007208.1 303851 R 264201 CDS YP_007209.1 46445844 2779709 complement(304867..305571) 1 NC_005861.1 hypothetical protein 305571 2779709 pc0210 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007209.1 304867 R 264201 CDS YP_007210.1 46445845 2781131 complement(305568..306299) 1 NC_005861.1 hypothetical protein 306299 2781131 pc0211 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007210.1 305568 R 264201 CDS YP_007211.1 46445846 2781132 complement(306447..306632) 1 NC_005861.1 hypothetical protein 306632 2781132 pc0212 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007211.1 306447 R 264201 CDS YP_007212.1 46445847 2781133 306676..306891 1 NC_005861.1 hypothetical protein 306891 2781133 pc0213 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007212.1 306676 D 264201 CDS YP_007213.1 46445848 2781313 308026..310041 1 NC_005861.1 similar to carboxy-terminal (= tail-specific) proteinase; carboxy-terminal (= tail-specific) proteinase 310041 tsp 2781313 tsp Candidatus Protochlamydia amoebophila UWE25 carboxy-terminal (= tail-specific) proteinase YP_007213.1 308026 D 264201 CDS YP_007214.1 46445849 2781240 complement(310067..310249) 1 NC_005861.1 hypothetical protein 310249 2781240 pc0215 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007214.1 310067 R 264201 CDS YP_007215.1 46445850 2781116 complement(310378..310560) 1 NC_005861.1 hypothetical protein 310560 2781116 pc0216 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007215.1 310378 R 264201 CDS YP_007216.1 46445851 2780930 310596..310940 1 NC_005861.1 strongly similar to 50S ribosomal protein L21; 50S ribosomal protein L21 310940 rplU 2780930 rplU Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L21 YP_007216.1 310596 D 264201 CDS YP_007217.1 46445852 2781392 310930..311181 1 NC_005861.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 311181 rpmA 2781392 rpmA Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L27 YP_007217.1 310930 D 264201 CDS YP_007218.1 46445853 2779577 311300..312313 1 NC_005861.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 312313 obgE 2779577 obgE Candidatus Protochlamydia amoebophila UWE25 GTPase ObgE YP_007218.1 311300 D 264201 CDS YP_007219.1 46445854 2781117 complement(312519..313268) 1 NC_005861.1 hypothetical protein 313268 2781117 pc0220 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007219.1 312519 R 264201 CDS YP_007220.1 46445855 2779863 complement(313572..314957) 1 NC_005861.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 314957 rho 2779863 rho Candidatus Protochlamydia amoebophila UWE25 transcription termination factor Rho YP_007220.1 313572 R 264201 CDS YP_007221.1 46445856 2780268 complement(314991..315602) 1 NC_005861.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 315602 coaE 2780268 coaE Candidatus Protochlamydia amoebophila UWE25 dephospho-CoA kinase YP_007221.1 314991 R 264201 CDS YP_007222.1 46445857 2779811 complement(315596..318271) 1 NC_005861.1 strongly similar to DNA polymerase I; DNA polymerase I 318271 polA 2779811 polA Candidatus Protochlamydia amoebophila UWE25 DNA polymerase I YP_007222.1 315596 R 264201 CDS YP_007223.1 46445858 2780106 complement(318295..319332) 1 NC_005861.1 similar to proteinase IV; proteinase IV 319332 sohB 2780106 sohB Candidatus Protochlamydia amoebophila UWE25 proteinase IV YP_007223.1 318295 R 264201 CDS YP_007224.1 46445859 2780582 319680..321629 1 NC_005861.1 hypothetical protein 321629 2780582 pc0225 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007224.1 319680 D 264201 CDS YP_007225.1 46445860 2780444 321638..322792 1 NC_005861.1 similar to sulfite reductase (NADPH) flavoprotein; sulfite reductase (NADPH) flavoprotein 322792 yvgR 2780444 yvgR Candidatus Protochlamydia amoebophila UWE25 sulfite reductase (NADPH) flavoprotein YP_007225.1 321638 D 264201 CDS YP_007226.1 46445861 2780546 complement(323095..323574) 1 NC_005861.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 323574 ispF 2780546 ispF Candidatus Protochlamydia amoebophila UWE25 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_007226.1 323095 R 264201 CDS YP_007227.1 46445862 2780583 323752..324840 1 NC_005861.1 hypothetical protein 324840 2780583 pc0228 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007227.1 323752 D 264201 CDS YP_007228.1 46445863 2781162 325018..326415 1 NC_005861.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 326415 murA 2781162 murA Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_007228.1 325018 D 264201 CDS YP_007229.1 46445864 2779629 326571..327614 1 NC_005861.1 L-lysine 2,3-aminomutase 327614 yodO 2779629 yodO Candidatus Protochlamydia amoebophila UWE25 L-lysine 2,3-aminomutase YP_007229.1 326571 D 264201 CDS YP_007230.1 46445865 2779797 complement(327625..329379) 1 NC_005861.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 329379 argS 2779797 argS Candidatus Protochlamydia amoebophila UWE25 arginyl-tRNA synthetase YP_007230.1 327625 R 264201 CDS YP_007231.1 46445866 2781157 329603..330727 1 NC_005861.1 similar to endopeptidase Clp ATP-binding chain B (heat shock protein); endopeptidase Clp ATP-binding chain B (heat shock protein) 330727 clpB 2781157 clpB Candidatus Protochlamydia amoebophila UWE25 endopeptidase Clp ATP-binding chain B (heat shock protein) YP_007231.1 329603 D 264201 CDS YP_007232.1 46445867 2780584 331122..331856 1 NC_005861.1 hypothetical protein 331856 2780584 pc0233 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007232.1 331122 D 264201 CDS YP_007233.1 46445868 2779627 331896..332336 1 NC_005861.1 hypothetical protein 332336 yjeE 2779627 yjeE Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007233.1 331896 D 264201 CDS YP_007234.1 46445869 2780071 332333..332953 1 NC_005861.1 hypothetical protein 332953 2780071 pc0235 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007234.1 332333 D 264201 CDS YP_007235.1 46445870 2779559 332959..333708 1 NC_005861.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 333708 dnaQ_2 2779559 dnaQ_2 Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III subunit epsilon YP_007235.1 332959 D 264201 CDS YP_007236.1 46445871 2780617 333724..334623 1 NC_005861.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 334623 2780617 pc0237 Candidatus Protochlamydia amoebophila UWE25 pyridoxal biosynthesis lyase PdxS YP_007236.1 333724 D 264201 CDS YP_007237.1 46445872 2780709 334627..335220 1 NC_005861.1 similar to glutamine amidotransferase; glutamine amidotransferase 335220 hisH 2780709 hisH Candidatus Protochlamydia amoebophila UWE25 glutamine amidotransferase YP_007237.1 334627 D 264201 CDS YP_007238.1 46445873 2779785 335314..336522 1 NC_005861.1 strongly similar to 3-phosphoglycerate kinase; 3-phosphoglycerate kinase 336522 pgk 2779785 pgk Candidatus Protochlamydia amoebophila UWE25 3-phosphoglycerate kinase YP_007238.1 335314 D 264201 CDS YP_007239.1 46445874 2780097 337044..338654 1 NC_005861.1 strongly similar to ADP/ATP translocase; ADP/ATP translocase 338654 ntt_3 2780097 ntt_3 Candidatus Protochlamydia amoebophila UWE25 ADP/ATP translocase YP_007239.1 337044 D 264201 CDS YP_007240.1 46445875 2780096 338779..340329 1 NC_005861.1 strongly similar to ADP/ATP translocase; ADP/ATP translocase 340329 ntt_2 2780096 ntt_2 Candidatus Protochlamydia amoebophila UWE25 ADP/ATP translocase YP_007240.1 338779 D 264201 CDS YP_007241.1 46445876 2780460 complement(340593..341018) 1 NC_005861.1 similar to Phosphatidylglycerophosphate synthase (= CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase ); phosphatidylglycerophosphate synthase (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) 341018 pgsA 2780460 pgsA Candidatus Protochlamydia amoebophila UWE25 phosphatidylglycerophosphate synthase (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) YP_007241.1 340593 R 264201 CDS YP_007242.1 46445877 2780618 complement(341231..342376) 1 NC_005861.1 hypothetical protein 342376 2780618 pc0243 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007242.1 341231 R 264201 CDS YP_007243.1 46445878 2781428 complement(342450..343958) 1 NC_005861.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 343958 gltX 2781428 gltX Candidatus Protochlamydia amoebophila UWE25 glutamyl-tRNA synthetase YP_007243.1 342450 R 264201 CDS YP_007244.1 46445879 2780238 complement(344266..344631) 1 NC_005861.1 hypothetical protein 344631 2780238 pc0245 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007244.1 344266 R 264201 CDS YP_007245.1 46445880 2780751 complement(344722..346683) 1 NC_005861.1 similar to carboxy-terminal (= tail-specific) proteinase; carboxy-terminal (= tail-specific) proteinase 346683 tsp 2780751 tsp Candidatus Protochlamydia amoebophila UWE25 carboxy-terminal (= tail-specific) proteinase YP_007245.1 344722 R 264201 CDS YP_007246.1 46445881 2779938 347183..347602 1 NC_005861.1 strongly similar to lysine-rich histone-specific protease; lysine-rich histone-specific protease 347602 euo 2779938 euo Candidatus Protochlamydia amoebophila UWE25 lysine-rich histone-specific protease YP_007246.1 347183 D 264201 CDS YP_007247.1 46445882 2780239 complement(347735..349039) 1 NC_005861.1 similar to RNA methyl transferase; RNA methyl transferase 349039 2780239 pc0248 Candidatus Protochlamydia amoebophila UWE25 RNA methyl transferase YP_007247.1 347735 R 264201 CDS YP_007248.1 46445883 2779493 complement(349036..350820) 1 NC_005861.1 similar to ssDNA-specific exonuclease; ssDNA-specific exonuclease 350820 recJ 2779493 recJ Candidatus Protochlamydia amoebophila UWE25 ssDNA-specific exonuclease YP_007248.1 349036 R 264201 CDS YP_007249.1 46445884 2780095 351721..353262 1 NC_005861.1 strongly similar to ADP/ATP translocase; ADP/ATP translocase 353262 ntt_1 2780095 ntt_1 Candidatus Protochlamydia amoebophila UWE25 ADP/ATP translocase YP_007249.1 351721 D 264201 CDS YP_007250.1 46445885 2781196 353704..358236 1 NC_005861.1 similar to fusion protein export proteins SecD/SecF; fusion protein export proteins SecD/SecF 358236 secDf 2781196 secDf Candidatus Protochlamydia amoebophila UWE25 fusion protein export proteins SecD/SecF YP_007250.1 353704 D 264201 CDS YP_007251.1 46445886 2781418 complement(358326..358769) 1 NC_005861.1 hypothetical protein 358769 2781418 pc0252 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007251.1 358326 R 264201 CDS YP_007252.1 46445887 2781419 complement(359175..359672) 1 NC_005861.1 hypothetical protein 359672 2781419 pc0253 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007252.1 359175 R 264201 CDS YP_007253.1 46445888 2779899 360520..361380 1 NC_005861.1 hypothetical protein 361380 2779899 pc0254 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007253.1 360520 D 264201 CDS YP_007254.1 46445889 2781284 361356..361679 1 NC_005861.1 hypothetical protein 361679 2781284 pc0255 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007254.1 361356 D 264201 CDS YP_007255.1 46445890 2781322 361676..362686 1 NC_005861.1 similar to ABC transporter periplasmic substrate-binding protein ytgA; ABC transporter periplasmic substrate-binding protein ytgA 362686 ytgA 2781322 ytgA Candidatus Protochlamydia amoebophila UWE25 ABC transporter periplasmic substrate-binding protein ytgA YP_007255.1 361676 D 264201 CDS YP_007256.1 46445891 2781323 362661..363503 1 NC_005861.1 similar to ABC transporter ATP-binding protein ytgB; ABC transporter ATP-binding protein ytgB 363503 ytgB 2781323 ytgB Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein ytgB YP_007256.1 362661 D 264201 CDS YP_007257.1 46445892 2781324 363505..364857 1 NC_005861.1 similar to ABC transporter permease ytgC; ABC transporter permease ytgC 364857 ytgC 2781324 ytgC Candidatus Protochlamydia amoebophila UWE25 ABC transporter permease ytgC YP_007257.1 363505 D 264201 CDS YP_007258.1 46445893 2780443 364847..365857 1 NC_005861.1 similar to ABC transporter permease ytgD; ABC transporter permease ytgD 365857 ytgD 2780443 ytgD Candidatus Protochlamydia amoebophila UWE25 ABC transporter permease ytgD YP_007258.1 364847 D 264201 CDS YP_007259.1 46445894 2779453 365941..367095 1 NC_005861.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 367095 dxr 2779453 dxr Candidatus Protochlamydia amoebophila UWE25 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_007259.1 365941 D 264201 CDS YP_007260.1 46445895 2781285 367144..369105 1 NC_005861.1 hypothetical protein 369105 2781285 pc0261 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007260.1 367144 D 264201 CDS YP_007261.1 46445896 2781286 369607..371316 1 NC_005861.1 hypothetical protein 371316 2781286 pc0262 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007261.1 369607 D 264201 CDS YP_007262.1 46445897 2781287 371875..372159 1 NC_005861.1 hypothetical protein 372159 2781287 pc0263 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007262.1 371875 D 264201 CDS YP_007263.1 46445898 2780486 complement(372491..377908) 1 NC_005861.1 hypothetical protein 377908 2780486 pc0264 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007263.1 372491 R 264201 CDS YP_007264.1 46445899 2780487 378091..378417 1 NC_005861.1 hypothetical protein 378417 2780487 pc0265 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007264.1 378091 D 264201 CDS YP_007265.1 46445900 2780233 complement(379001..379720) 1 NC_005861.1 similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component); nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) 379720 ptsN 2780233 ptsN Candidatus Protochlamydia amoebophila UWE25 nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) YP_007265.1 379001 R 264201 CDS YP_007266.1 46445901 2780234 complement(380039..380377) 1 NC_005861.1 similar to nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component); nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) 380377 ptsN 2780234 ptsN Candidatus Protochlamydia amoebophila UWE25 nitrogen regulatory IIA protein (enzyme IIA-ntr) (phosphotransferase enzyme II, A component) YP_007266.1 380039 R 264201 CDS YP_007267.1 46445902 2779452 complement(380512..380964) 1 NC_005861.1 strongly similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase; deoxyuridine 5'-triphosphate nucleotidohydrolase 380964 dut 2779452 dut Candidatus Protochlamydia amoebophila UWE25 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_007267.1 380512 R 264201 CDS YP_007268.1 46445903 2781314 complement(380973..381890) 1 NC_005861.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 381890 accD 2781314 accD Candidatus Protochlamydia amoebophila UWE25 acetyl-CoA carboxylase subunit beta YP_007268.1 380973 R 264201 CDS YP_007269.1 46445904 2780105 complement(382103..382729) 1 NC_005861.1 strongly similar to superoxide dismutase (Mn) precursor; superoxide dismutase (Mn) 382729 sodM 2780105 sodM Candidatus Protochlamydia amoebophila UWE25 superoxide dismutase (Mn) YP_007269.1 382103 R 264201 CDS YP_007270.1 46445905 2781219 complement(382941..383594) 1 NC_005861.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 383594 hemD 2781219 hemD Candidatus Protochlamydia amoebophila UWE25 uroporphyrinogen-III synthase YP_007270.1 382941 R 264201 CDS YP_007271.1 46445906 2779720 complement(383591..384292) 1 NC_005861.1 transformation of prophobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 384292 hemC 2779720 hemC Candidatus Protochlamydia amoebophila UWE25 porphobilinogen deaminase YP_007271.1 383591 R 264201 CDS YP_007272.1 46445907 2781209 complement(384258..385628) 1 NC_005861.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 385628 sms 2781209 sms Candidatus Protochlamydia amoebophila UWE25 DNA repair protein RadA YP_007272.1 384258 R 264201 CDS YP_007273.1 46445908 2780184 complement(385653..386381) 1 NC_005861.1 similar to Ribonuclease III; ribonuclease III 386381 rnc 2780184 rnc Candidatus Protochlamydia amoebophila UWE25 ribonuclease III YP_007273.1 385653 R 264201 CDS YP_007274.1 46445909 2781220 386518..387192 1 NC_005861.1 hypothetical protein 387192 2781220 pc0275 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007274.1 386518 D 264201 CDS YP_007275.1 46445910 2781221 387252..387917 1 NC_005861.1 hypothetical protein 387917 2781221 pc0276 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007275.1 387252 D 264201 CDS YP_007276.1 46445911 2779487 complement(387890..389107) 1 NC_005861.1 hypothetical protein 389107 2779487 pc0277 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007276.1 387890 R 264201 CDS YP_007277.1 46445912 2780422 389470..390507 1 NC_005861.1 hypothetical protein 390507 2780422 pc0278 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007277.1 389470 D 264201 CDS YP_007278.1 46445913 2780423 390366..391883 1 NC_005861.1 hypothetical protein 391883 2780423 pc0279 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007278.1 390366 D 264201 CDS YP_007279.1 46445914 2781403 391958..392596 1 NC_005861.1 hypothetical protein 392596 2781403 pc0280 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007279.1 391958 D 264201 CDS YP_007280.1 46445915 2780943 392664..393698 1 NC_005861.1 strongly similar to glycine cleavage system T protein; glycine cleavage system T protein 393698 gcvT 2780943 gcvT Candidatus Protochlamydia amoebophila UWE25 glycine cleavage system T protein YP_007280.1 392664 D 264201 CDS YP_007281.1 46445916 2780948 393695..394063 1 NC_005861.1 strongly similar to glycine cleavage system H protein; glycine cleavage system H protein 394063 gcvH 2780948 gcvH Candidatus Protochlamydia amoebophila UWE25 glycine cleavage system H protein YP_007281.1 393695 D 264201 CDS YP_007282.1 46445917 2780941 394064..395404 1 NC_005861.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 395404 gcvP1 2780941 gcvP1 Candidatus Protochlamydia amoebophila UWE25 glycine dehydrogenase subunit 1 YP_007282.1 394064 D 264201 CDS YP_007283.1 46445918 2780942 395427..396869 1 NC_005861.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 396869 gcvP2 2780942 gcvP2 Candidatus Protochlamydia amoebophila UWE25 glycine dehydrogenase subunit 2 YP_007283.1 395427 D 264201 CDS YP_007284.1 46445919 2781404 complement(396871..397257) 1 NC_005861.1 hypothetical protein 397257 2781404 pc0285 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007284.1 396871 R 264201 CDS YP_007285.1 46445920 2779961 397258..397926 1 NC_005861.1 strongly similar to alkylated DNA repair protein; alkylated DNA repair protein 397926 alkB 2779961 alkB Candidatus Protochlamydia amoebophila UWE25 alkylated DNA repair protein YP_007285.1 397258 D 264201 CDS YP_007286.1 46445921 2780412 complement(398281..400206) 1 NC_005861.1 similar to cadmium-transporting ATPase; cadmium-transporting ATPase 400206 cadA 2780412 cadA Candidatus Protochlamydia amoebophila UWE25 cadmium-transporting ATPase YP_007286.1 398281 R 264201 CDS YP_007287.1 46445922 2781444 complement(400163..403378) 1 NC_005861.1 strongly similar to cation efflux system membrane protein A; cation efflux system membrane protein A 403378 czcA 2781444 czcA Candidatus Protochlamydia amoebophila UWE25 cation efflux system membrane protein A YP_007287.1 400163 R 264201 CDS YP_007288.1 46445923 2781445 complement(403381..404523) 1 NC_005861.1 similar to cation efflux system membrane protein B; cation efflux system membrane protein B 404523 czcB 2781445 czcB Candidatus Protochlamydia amoebophila UWE25 cation efflux system membrane protein B YP_007288.1 403381 R 264201 CDS YP_007289.1 46445924 2781446 complement(404528..405682) 1 NC_005861.1 similar to cation efflux system membrane protein C; cation efflux system membrane protein C 405682 czcC 2781446 czcC Candidatus Protochlamydia amoebophila UWE25 cation efflux system membrane protein C YP_007289.1 404528 R 264201 CDS YP_007290.1 46445925 2781103 405690..405875 1 NC_005861.1 hypothetical protein 405875 2781103 pc0291 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007290.1 405690 D 264201 CDS YP_007291.1 46445926 2781104 complement(406333..406533) 1 NC_005861.1 hypothetical protein 406533 2781104 pc0292 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007291.1 406333 R 264201 CDS YP_007292.1 46445927 2779679 complement(406880..407311) 1 NC_005861.1 hypothetical protein 407311 2779679 pc0293 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007292.1 406880 R 264201 CDS YP_007293.1 46445928 2780899 complement(407289..408092) 1 NC_005861.1 hypothetical protein 408092 2780899 pc0294 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007293.1 407289 R 264201 CDS YP_007294.1 46445929 2780900 complement(408856..409203) 1 NC_005861.1 hypothetical protein 409203 2780900 pc0295 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007294.1 408856 R 264201 CDS YP_007295.1 46445930 2780901 complement(409556..409942) 1 NC_005861.1 hypothetical protein 409942 2780901 pc0296 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007295.1 409556 R 264201 CDS YP_007296.1 46445931 2779671 complement(409939..410700) 1 NC_005861.1 hypothetical protein 410700 2779671 pc0297 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007296.1 409939 R 264201 CDS YP_007297.1 46445932 2780484 complement(411269..412012) 1 NC_005861.1 strongly similar to sodium-translocating NADH dehydrogenase (ubiquinone) chain E; Na(+)-translocating NADH-quinone reductase subunit E 412012 nqrE 2780484 nqrE Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit E YP_007297.1 411269 R 264201 CDS YP_007298.1 46445933 2780483 complement(412043..412678) 1 NC_005861.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 412678 nqrD 2780483 nqrD Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit D YP_007298.1 412043 R 264201 CDS YP_007299.1 46445934 2780482 complement(412688..413620) 1 NC_005861.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 413620 nqrC 2780482 nqrC Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit C YP_007299.1 412688 R 264201 CDS YP_007300.1 46445935 2780504 complement(413607..415136) 1 NC_005861.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 415136 nqrB 2780504 nqrB Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit B YP_007300.1 413607 R 264201 CDS YP_007301.1 46445936 2780841 complement(415400..415876) 1 NC_005861.1 hypothetical protein 415876 2780841 pc0302 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007301.1 415400 R 264201 CDS YP_007302.1 46445937 2780842 416091..421205 1 NC_005861.1 hypothetical protein 421205 2780842 pc0303 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007302.1 416091 D 264201 CDS YP_007303.1 46445938 2779781 421278..422255 1 NC_005861.1 hypothetical protein 422255 2779781 pc0304 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007303.1 421278 D 264201 CDS YP_007304.1 46445939 2779824 422258..422983 1 NC_005861.1 similar to competence-related protein comF; competence-related protein comF 422983 comF 2779824 comF Candidatus Protochlamydia amoebophila UWE25 competence-related protein comF YP_007304.1 422258 D 264201 CDS YP_007305.1 46445940 2780662 complement(422980..424113) 1 NC_005861.1 similar to divalent cation transport protein; divalent cation transport protein 424113 corA 2780662 corA Candidatus Protochlamydia amoebophila UWE25 divalent cation transport protein YP_007305.1 422980 R 264201 CDS YP_007306.1 46445941 2780075 complement(424280..425665) 1 NC_005861.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 425665 dnaA 2780075 dnaA Candidatus Protochlamydia amoebophila UWE25 chromosome replication initiator DnaA YP_007306.1 424280 R 264201 CDS YP_007307.1 46445942 2779782 426070..427242 1 NC_005861.1 hypothetical protein 427242 2779782 pc0308 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007307.1 426070 D 264201 CDS YP_007308.1 46445943 2779783 complement(427377..427772) 1 NC_005861.1 hypothetical protein 427772 2779783 pc0309 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007308.1 427377 R 264201 CDS YP_007309.1 46445944 2780451 complement(427775..428224) 1 NC_005861.1 hypothetical protein 428224 2780451 pc0310 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007309.1 427775 R 264201 CDS YP_007310.1 46445945 2780206 428439..429389 1 NC_005861.1 strongly similar to S-adenosyl-methyltransferase; S-adenosyl-methyltransferase 429389 mraW 2780206 mraW Candidatus Protochlamydia amoebophila UWE25 S-adenosyl-methyltransferase YP_007310.1 428439 D 264201 CDS YP_007311.1 46445946 2779409 429398..429691 1 NC_005861.1 hypothetical protein 429691 2779409 pc0312 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007311.1 429398 D 264201 CDS YP_007312.1 46445947 2780864 429696..431726 1 NC_005861.1 similar to penicillin-binding protein 2 (transglycolase/transpeptidase); penicillin-binding protein 2 431726 pbp2 2780864 pbp2 Candidatus Protochlamydia amoebophila UWE25 penicillin-binding protein 2 YP_007312.1 429696 D 264201 CDS YP_007313.1 46445948 2780008 431742..433220 1 NC_005861.1 similar to UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase; UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase 433220 murE 2780008 murE Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase YP_007313.1 431742 D 264201 CDS YP_007314.1 46445949 2780974 433249..434091 1 NC_005861.1 similar to N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 434091 amiA 2780974 amiA Candidatus Protochlamydia amoebophila UWE25 N-acetylmuramoyl-L-alanine amidase YP_007314.1 433249 D 264201 CDS YP_007315.1 46445950 2779410 434217..435107 1 NC_005861.1 hypothetical protein 435107 2779410 pc0316 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007315.1 434217 D 264201 CDS YP_007316.1 46445951 2779789 435659..437113 1 NC_005861.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 437113 pgd 2779789 pgd Candidatus Protochlamydia amoebophila UWE25 6-phosphogluconate dehydrogenase YP_007316.1 435659 D 264201 CDS YP_007317.1 46445952 2780534 complement(437125..437757) 1 NC_005861.1 similar to 1-acylglycerol-3-phosphate O-acyltransferase; 1-acylglycerol-3-phosphate O-acyltransferase 437757 plsC 2780534 plsC Candidatus Protochlamydia amoebophila UWE25 1-acylglycerol-3-phosphate O-acyltransferase YP_007317.1 437125 R 264201 CDS YP_007318.1 46445953 2779717 complement(437772..438458) 1 NC_005861.1 strongly similar to cytidylate kinase; cytidylate kinase 438458 cmk 2779717 cmk Candidatus Protochlamydia amoebophila UWE25 cytidylate kinase YP_007318.1 437772 R 264201 CDS YP_007319.1 46445954 2781155 complement(438511..439449) 1 NC_005861.1 similar to phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 439449 cdsA 2781155 cdsA Candidatus Protochlamydia amoebophila UWE25 phosphatidate cytidylyltransferase YP_007319.1 438511 R 264201 CDS YP_007320.1 46445955 2780837 complement(439355..440131) 1 NC_005861.1 strongly similar to undecaprenyl pyrophosphate synthetase; undecaprenyl pyrophosphate synthetase 440131 uppS 2780837 uppS Candidatus Protochlamydia amoebophila UWE25 undecaprenyl pyrophosphate synthetase YP_007320.1 439355 R 264201 CDS YP_007321.1 46445956 2780784 complement(440213..442021) 1 NC_005861.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 442021 lepA 2780784 lepA Candidatus Protochlamydia amoebophila UWE25 GTP-binding protein LepA YP_007321.1 440213 R 264201 CDS YP_007322.1 46445957 2780226 442388..443443 1 NC_005861.1 hypothetical protein 443443 2780226 pc0323 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007322.1 442388 D 264201 CDS YP_007323.1 46445958 2780227 complement(443448..445643) 1 NC_005861.1 hypothetical protein 445643 2780227 pc0324 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007323.1 443448 R 264201 CDS YP_007324.1 46445959 2779496 446001..446297 1 NC_005861.1 hypothetical protein 446297 2779496 pc0325 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007324.1 446001 D 264201 CDS YP_007325.1 46445960 2779628 446484..447449 1 NC_005861.1 hypothetical protein 447449 ykuE 2779628 ykuE Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007325.1 446484 D 264201 CDS YP_007326.1 46445961 2780541 447451..448143 1 NC_005861.1 similar to 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 448143 ispD 2780541 ispD Candidatus Protochlamydia amoebophila UWE25 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_007326.1 447451 D 264201 CDS YP_007327.1 46445962 2780741 448130..448900 1 NC_005861.1 similar to tRNA pseudouridylate synthase I; tRNA pseudouridylate synthase I 448900 truA 2780741 truA Candidatus Protochlamydia amoebophila UWE25 tRNA pseudouridylate synthase I YP_007327.1 448130 D 264201 CDS YP_007328.1 46445963 2779497 complement(448912..449595) 1 NC_005861.1 hypothetical protein 449595 2779497 pc0329 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007328.1 448912 R 264201 CDS YP_007329.1 46445964 2779385 449618..450544 1 NC_005861.1 hypothetical protein 450544 2779385 pc0330 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007329.1 449618 D 264201 CDS YP_007330.1 46445965 2780745 450747..451115 1 NC_005861.1 hypothetical protein 451115 2780745 pc0331 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007330.1 450747 D 264201 CDS YP_007331.1 46445966 2780746 451857..452843 1 NC_005861.1 hypothetical protein 452843 2780746 pc0332 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007331.1 451857 D 264201 CDS YP_007332.1 46445967 2780747 complement(453112..453372) 1 NC_005861.1 hypothetical protein 453372 2780747 pc0333 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007332.1 453112 R 264201 CDS YP_007333.1 46445968 2780080 complement(453695..455545) 1 NC_005861.1 hypothetical protein 455545 ppaA 2780080 ppaA Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007333.1 453695 R 264201 CDS YP_007334.1 46445969 2779434 complement(456154..458082) 1 NC_005861.1 hypothetical protein 458082 ppaA 2779434 ppaA Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007334.1 456154 R 264201 CDS YP_007335.1 46445970 2780078 complement(458803..460611) 1 NC_005861.1 hypothetical protein 460611 ppa 2780078 ppa Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007335.1 458803 R 264201 CDS YP_007336.1 46445971 2779411 complement(461015..461458) 1 NC_005861.1 hypothetical protein 461458 2779411 pc0337 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007336.1 461015 R 264201 CDS YP_007337.1 46445972 2780129 complement(461539..462174) 1 NC_005861.1 hypothetical protein 462174 2780129 pc0338 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007337.1 461539 R 264201 CDS YP_007338.1 46445973 2780130 complement(462413..463489) 1 NC_005861.1 hypothetical protein 463489 2780130 pc0339 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007338.1 462413 R 264201 CDS YP_007339.1 46445974 2779470 463657..464352 1 NC_005861.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 464352 recO 2779470 recO Candidatus Protochlamydia amoebophila UWE25 DNA repair protein RecO YP_007339.1 463657 D 264201 CDS YP_007340.1 46445975 2779471 464614..465414 1 NC_005861.1 hypothetical protein 465414 2779471 pc0341 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007340.1 464614 D 264201 CDS YP_007341.1 46445976 2779472 complement(465740..465925) 1 NC_005861.1 hypothetical protein 465925 2779472 pc0342 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007341.1 465740 R 264201 CDS YP_007342.1 46445977 2780342 complement(466255..467232) 1 NC_005861.1 hypothetical protein 467232 2780342 pc0343 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007342.1 466255 R 264201 CDS YP_007343.1 46445978 2780449 complement(467371..468978) 1 NC_005861.1 hypothetical protein 468978 2780449 pc0344 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007343.1 467371 R 264201 CDS YP_007344.1 46445979 2780455 469268..470116 1 NC_005861.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 470116 nfo 2780455 nfo Candidatus Protochlamydia amoebophila UWE25 endonuclease IV YP_007344.1 469268 D 264201 CDS YP_007345.1 46445980 2779793 470251..471654 1 NC_005861.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 471654 asnC 2779793 asnC Candidatus Protochlamydia amoebophila UWE25 asparaginyl-tRNA synthetase YP_007345.1 470251 D 264201 CDS YP_007346.1 46445981 2779718 complement(471768..472790) 1 NC_005861.1 similar to glutamyl tRNA reductase; glutamyl tRNA reductase 472790 hemA 2779718 hemA Candidatus Protochlamydia amoebophila UWE25 glutamyl tRNA reductase YP_007346.1 471768 R 264201 CDS YP_007347.1 46445982 2780450 473214..475064 1 NC_005861.1 hypothetical protein 475064 2780450 pc0348 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007347.1 473214 D 264201 CDS YP_007348.1 46445983 2779473 complement(475156..476184) 1 NC_005861.1 hypothetical protein 476184 2779473 pc0349 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007348.1 475156 R 264201 CDS YP_007349.1 46445984 2780175 476407..478227 1 NC_005861.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 478227 gyrB 2780175 gyrB Candidatus Protochlamydia amoebophila UWE25 DNA topoisomerase IV subunit B YP_007349.1 476407 D 264201 CDS YP_007350.1 46445985 2780173 478308..480209 1 NC_005861.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 480209 gyrA 2780173 gyrA Candidatus Protochlamydia amoebophila UWE25 DNA topoisomerase IV subunit A YP_007350.1 478308 D 264201 CDS YP_007351.1 46445986 2779474 480323..480946 1 NC_005861.1 hypothetical protein 480946 2779474 pc0352 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007351.1 480323 D 264201 CDS YP_007352.1 46445987 2780426 481054..481320 1 NC_005861.1 hypothetical protein 481320 2780426 pc0353 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007352.1 481054 D 264201 CDS YP_007353.1 46445988 2780427 481578..481883 1 NC_005861.1 hypothetical protein 481883 2780427 pc0354 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007353.1 481578 D 264201 CDS YP_007354.1 46445989 2780183 481899..482855 1 NC_005861.1 strongly similar to 23S RNA-specific pseudouridine synthase D; 23S RNA-specific pseudouridylate synthase 482855 rluD 2780183 rluD Candidatus Protochlamydia amoebophila UWE25 23S RNA-specific pseudouridylate synthase YP_007354.1 481899 D 264201 CDS YP_007355.1 46445990 2780697 482872..483327 1 NC_005861.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 483327 dtd 2780697 dtd Candidatus Protochlamydia amoebophila UWE25 D-tyrosyl-tRNA(Tyr) deacylase YP_007355.1 482872 D 264201 CDS YP_007356.1 46445991 2779771 483551..483799 1 NC_005861.1 hypothetical protein 483799 2779771 pc0357 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007356.1 483551 D 264201 CDS YP_007357.1 46445992 2780686 complement(484092..486749) 1 NC_005861.1 hypothetical protein 486749 2780686 pc0358 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007357.1 484092 R 264201 CDS YP_007358.1 46445993 2780687 complement(486980..487384) 1 NC_005861.1 hypothetical protein 487384 2780687 pc0359 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007358.1 486980 R 264201 CDS YP_007359.1 46445994 2780688 complement(487378..487611) 1 NC_005861.1 hypothetical protein 487611 2780688 pc0360 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007359.1 487378 R 264201 CDS YP_007360.1 46445995 2781375 487833..488348 1 NC_005861.1 similar to multifunctional folic acid synthesis protein; multifunctional folic acid synthesis protein 488348 folK 2781375 folK Candidatus Protochlamydia amoebophila UWE25 multifunctional folic acid synthesis protein YP_007360.1 487833 D 264201 CDS YP_007361.1 46445996 2780542 488378..489205 1 NC_005861.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 489205 kdsA 2780542 kdsA Candidatus Protochlamydia amoebophila UWE25 2-dehydro-3-deoxyphosphooctonate aldolase YP_007361.1 488378 D 264201 CDS YP_007362.1 46445997 2780827 489215..489847 1 NC_005861.1 hypothetical protein 489847 2780827 pc0363 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007362.1 489215 D 264201 CDS YP_007363.1 46445998 2780715 489844..491367 1 NC_005861.1 hypothetical protein 491367 2780715 pc0364 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007363.1 489844 D 264201 CDS YP_007364.1 46445999 2780716 491367..492107 1 NC_005861.1 hypothetical protein 492107 2780716 pc0365 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007364.1 491367 D 264201 CDS YP_007365.1 46446000 2780635 complement(492179..492907) 1 NC_005861.1 strongly similar to nucleoside-diphosphate kinase; nucleoside-diphosphate kinase 492907 ndk 2780635 ndk Candidatus Protochlamydia amoebophila UWE25 nucleoside-diphosphate kinase YP_007365.1 492179 R 264201 CDS YP_007366.1 46446001 2779658 complement(492937..493515) 1 NC_005861.1 strongly similar to p-aminobenzoate synthase; p-aminobenzoate synthase 493515 pabA 2779658 pabA Candidatus Protochlamydia amoebophila UWE25 p-aminobenzoate synthase YP_007366.1 492937 R 264201 CDS YP_007367.1 46446002 2780636 complement(493528..493959) 1 NC_005861.1 strongly similar to nucleoside-diphosphate kinase; nucleoside-diphosphate kinase 493959 ndk 2780636 ndk Candidatus Protochlamydia amoebophila UWE25 nucleoside-diphosphate kinase YP_007367.1 493528 R 264201 CDS YP_007368.1 46446003 2779549 494708..497116 1 NC_005861.1 similar to phenylalanine-tRNA ligase beta chain; phenylalanine-tRNA ligase subunit beta 497116 pheT 2779549 pheT Candidatus Protochlamydia amoebophila UWE25 phenylalanine-tRNA ligase subunit beta YP_007368.1 494708 D 264201 CDS YP_007369.1 46446004 2780081 497138..498103 1 NC_005861.1 hypothetical protein 498103 2780081 pc0370 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007369.1 497138 D 264201 CDS YP_007370.1 46446005 2780798 complement(498124..498399) 1 NC_005861.1 similar to ferredoxin [2Fe-2S] IV; ferredoxin [2Fe-2S] IV 498399 fdxC 2780798 fdxC Candidatus Protochlamydia amoebophila UWE25 ferredoxin [2Fe-2S] IV YP_007370.1 498124 R 264201 CDS YP_007371.1 46446006 2780082 complement(498412..498963) 1 NC_005861.1 hypothetical protein 498963 2780082 pc0372 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007371.1 498412 R 264201 CDS YP_007372.1 46446007 2780083 499192..499419 1 NC_005861.1 hypothetical protein 499419 2780083 pc0373 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007372.1 499192 D 264201 CDS YP_007373.1 46446008 2781272 500007..500219 1 NC_005861.1 hypothetical protein 500219 2781272 pc0374 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007373.1 500007 D 264201 CDS YP_007374.1 46446009 2779676 complement(500248..502929) 1 NC_005861.1 similar to rapA, a bacterial member of the swi/snf helicase; swi/snf helicase 502929 rapA 2779676 rapA Candidatus Protochlamydia amoebophila UWE25 swi/snf helicase YP_007374.1 500248 R 264201 CDS YP_007375.1 46446010 2779528 503085..503903 1 NC_005861.1 hypothetical protein 503903 2779528 pc0376 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007375.1 503085 D 264201 CDS YP_007376.1 46446011 2779529 503909..504166 1 NC_005861.1 hypothetical protein 504166 2779529 pc0377 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007376.1 503909 D 264201 CDS YP_007377.1 46446012 2780428 complement(504335..505297) 1 NC_005861.1 hypothetical protein 505297 2780428 pc0378 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007377.1 504335 R 264201 CDS YP_007378.1 46446013 2780744 505623..505943 1 NC_005861.1 strongly similar to thioredoxin; thioredoxin 505943 trxA 2780744 trxA Candidatus Protochlamydia amoebophila UWE25 thioredoxin YP_007378.1 505623 D 264201 CDS YP_007379.1 46446014 2780429 complement(506091..506312) 1 NC_005861.1 hypothetical protein 506312 2780429 pc0380 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007379.1 506091 R 264201 CDS YP_007380.1 46446015 2780434 506404..508083 1 NC_005861.1 similar to glutathione-regulated potassium-efflux system protein; glutathione-regulated potassium-efflux system protein 508083 kefC 2780434 kefC Candidatus Protochlamydia amoebophila UWE25 glutathione-regulated potassium-efflux system protein YP_007380.1 506404 D 264201 CDS YP_007381.1 46446016 2779686 complement(508114..508560) 1 NC_005861.1 hypothetical protein 508560 2779686 pc0382 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007381.1 508114 R 264201 CDS YP_007382.1 46446017 2780204 complement(508641..509513) 1 NC_005861.1 similar to mip (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase); MIP (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase) 509513 mip 2780204 mip Candidatus Protochlamydia amoebophila UWE25 MIP (macrophage infectivity potentiator, fkbp-type peptidyl-prolyl cis-trans isomerase) YP_007382.1 508641 R 264201 CDS YP_007383.1 46446018 2779805 complement(509561..511360) 1 NC_005861.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 511360 aspS 2779805 aspS Candidatus Protochlamydia amoebophila UWE25 aspartyl-tRNA synthetase YP_007383.1 509561 R 264201 CDS YP_007384.1 46446019 2780710 complement(511526..512800) 1 NC_005861.1 strongly similar to histidine-tRNA ligase; histidine-tRNA ligase 512800 hisS 2780710 hisS Candidatus Protochlamydia amoebophila UWE25 histidine-tRNA ligase YP_007384.1 511526 R 264201 CDS YP_007385.1 46446020 2779687 complement(513059..515530) 1 NC_005861.1 hypothetical protein 515530 2779687 pc0386 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007385.1 513059 R 264201 CDS YP_007386.1 46446021 2779724 516386..517768 1 NC_005861.1 strongly similar to regulatory protein uhpC; regulatory protein uhpC 517768 uhpC 2779724 uhpC Candidatus Protochlamydia amoebophila UWE25 regulatory protein uhpC YP_007386.1 516386 D 264201 CDS YP_007387.1 46446022 2781211 518988..519470 1 NC_005861.1 hypothetical protein 519470 2781211 pc0388 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007387.1 518988 D 264201 CDS YP_007388.1 46446023 2780110 519804..523562 1 NC_005861.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 523562 dnaE 2780110 dnaE Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III subunit alpha YP_007388.1 519804 D 264201 CDS YP_007389.1 46446024 2779968 523661..525067 1 NC_005861.1 hypothetical protein 525067 2779968 pc0390 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007389.1 523661 D 264201 CDS YP_007390.1 46446025 2779969 525073..525630 1 NC_005861.1 hypothetical protein 525630 2779969 pc0391 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007390.1 525073 D 264201 CDS YP_007391.1 46446026 2779589 525646..526068 1 NC_005861.1 similar to rsbW, negative regulator of sigma-B activity (switch protein/serine kinase); rsbW, negative regulator of sigma-B activity (switch protein/serine kinase) 526068 rsbW 2779589 rsbW Candidatus Protochlamydia amoebophila UWE25 rsbW, negative regulator of sigma-B activity (switch protein/serine kinase) YP_007391.1 525646 D 264201 CDS YP_007392.1 46446027 2779970 complement(526096..526593) 1 NC_005861.1 hypothetical protein 526593 2779970 pc0393 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007392.1 526096 R 264201 CDS YP_007393.1 46446028 2780875 526665..528035 1 NC_005861.1 similar to serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein); serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) 528035 dac 2780875 dac Candidatus Protochlamydia amoebophila UWE25 serine-type D-Ala-D-Ala carboxypeptidase (penicillin binding protein) YP_007393.1 526665 D 264201 CDS YP_007394.2 161611309 2780585 complement(528658..529512) 1 NC_005861.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 529512 ksgA 2780585 ksgA Candidatus Protochlamydia amoebophila UWE25 dimethyladenosine transferase YP_007394.2 528658 R 264201 CDS YP_007395.1 46446030 2779743 complement(529521..530648) 1 NC_005861.1 hypothetical protein 530648 2779743 pc0396 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007395.1 529521 R 264201 CDS YP_007396.1 46446031 2779590 complement(530661..531794) 1 NC_005861.1 similar to 16S rRNA m5C967 SAM-dependent methyltransferase; 16S rRNA m5C967 SAM-dependent methyltransferase 531794 rsmB 2779590 rsmB Candidatus Protochlamydia amoebophila UWE25 16S rRNA m5C967 SAM-dependent methyltransferase YP_007396.1 530661 R 264201 CDS YP_007397.1 46446032 2779738 532019..534415 1 NC_005861.1 similar to D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 534415 ddlA 2779738 ddlA Candidatus Protochlamydia amoebophila UWE25 D-alanine--D-alanine ligase YP_007397.1 532019 D 264201 CDS YP_007398.1 46446033 2780445 534541..537063 1 NC_005861.1 similar to eucaryotic myosin heavy chain; eucaryotic myosin heavy chain 537063 zip 2780445 zip Candidatus Protochlamydia amoebophila UWE25 eucaryotic myosin heavy chain YP_007398.1 534541 D 264201 CDS YP_007399.1 46446034 2779648 537373..538962 1 NC_005861.1 transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 538962 cutE 2779648 cutE Candidatus Protochlamydia amoebophila UWE25 apolipoprotein N-acyltransferase YP_007399.1 537373 D 264201 CDS YP_007400.1 46446035 2779982 539098..539976 1 NC_005861.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 539976 lpxC 2779982 lpxC Candidatus Protochlamydia amoebophila UWE25 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_007400.1 539098 D 264201 CDS YP_007401.1 46446036 2780878 539976..540440 1 NC_005861.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 540440 fabZ 2780878 fabZ Candidatus Protochlamydia amoebophila UWE25 (3R)-hydroxymyristoyl-ACP dehydratase YP_007401.1 539976 D 264201 CDS YP_007402.1 46446037 2781441 540487..541335 1 NC_005861.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 541335 lpxA 2781441 lpxA Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylglucosamine acyltransferase YP_007402.1 540487 D 264201 CDS YP_007403.1 46446038 2780498 541335..542291 1 NC_005861.1 strongly similar to methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 542291 fmt 2780498 fmt Candidatus Protochlamydia amoebophila UWE25 methionyl-tRNA formyltransferase YP_007403.1 541335 D 264201 CDS YP_007404.1 46446039 2780255 complement(542366..543193) 1 NC_005861.1 hypothetical protein 543193 2780255 pc0405 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007404.1 542366 R 264201 CDS YP_007405.1 46446040 2780256 complement(543349..543534) 1 NC_005861.1 hypothetical protein 543534 2780256 pc0406 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007405.1 543349 R 264201 CDS YP_007406.1 46446041 2780735 complement(543579..543764) 1 NC_005861.1 hypothetical protein 543764 2780735 pc0407 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007406.1 543579 R 264201 CDS YP_007407.1 46446042 2780736 544280..545284 1 NC_005861.1 hypothetical protein 545284 2780736 pc0408 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007407.1 544280 D 264201 CDS YP_007408.1 46446043 2780737 545325..546221 1 NC_005861.1 hypothetical protein 546221 2780737 pc0409 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007408.1 545325 D 264201 CDS YP_007409.1 46446044 2781181 546262..547344 1 NC_005861.1 hypothetical protein 547344 2781181 pc0410 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007409.1 546262 D 264201 CDS YP_007410.1 46446045 2781182 547458..548015 1 NC_005861.1 hypothetical protein 548015 2781182 pc0411 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007410.1 547458 D 264201 CDS YP_007411.2 161611308 2780870 548994..549659 1 NC_005861.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 549659 rplC 2780870 rplC Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L3 YP_007411.2 548994 D 264201 CDS YP_007412.2 161611307 2780871 549686..550369 1 NC_005861.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 550369 rplD 2780871 rplD Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L4 YP_007412.2 549686 D 264201 CDS YP_007413.1 46446048 2780810 550384..550719 1 NC_005861.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 550719 rplW 2780810 rplW Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L23 YP_007413.1 550384 D 264201 CDS YP_007414.1 46446049 2780869 550737..551582 1 NC_005861.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 551582 rplB 2780869 rplB Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L2 YP_007414.1 550737 D 264201 CDS YP_007415.1 46446050 2780857 551585..551848 1 NC_005861.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 551848 rpsS 2780857 rpsS Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S19 YP_007415.1 551585 D 264201 CDS YP_007416.1 46446051 2780809 551860..552195 1 NC_005861.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 552195 rplV 2780809 rplV Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L22 YP_007416.1 551860 D 264201 CDS YP_007417.1 46446052 2779569 552207..552851 1 NC_005861.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 552851 rpsC 2779569 rpsC Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S3 YP_007417.1 552207 D 264201 CDS YP_007418.1 46446053 2779460 552854..553273 1 NC_005861.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 553273 rplP 2779460 rplP Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L16 YP_007418.1 552854 D 264201 CDS YP_007419.1 46446054 2780821 553280..553501 1 NC_005861.1 similar to 50S ribosomal protein L29; 50S ribosomal protein L29 553501 rpmC 2780821 rpmC Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L29 YP_007419.1 553280 D 264201 CDS YP_007420.1 46446055 2779884 553504..553749 1 NC_005861.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 553749 rpsQ 2779884 rpsQ Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S17 YP_007420.1 553504 D 264201 CDS YP_007421.1 46446056 2781037 553940..554308 1 NC_005861.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 554308 rplN 2781037 rplN Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L14 YP_007421.1 553940 D 264201 CDS YP_007422.1 46446057 2780811 554329..554679 1 NC_005861.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 554679 rplX 2780811 rplX Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L24 YP_007422.1 554329 D 264201 CDS YP_007423.1 46446058 2779537 554693..555250 1 NC_005861.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 555250 rplE 2779537 rplE Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L5 YP_007423.1 554693 D 264201 CDS YP_007424.1 46446059 2781246 555265..555666 1 NC_005861.1 strongly similar to 30S ribosomal protein S8; 30S ribosomal protein S8 555666 rpsH 2781246 rpsH Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S8 YP_007424.1 555265 D 264201 CDS YP_007425.1 46446060 2779538 555682..556230 1 NC_005861.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 556230 rplF 2779538 rplF Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L6 YP_007425.1 555682 D 264201 CDS YP_007426.1 46446061 2780927 556247..556618 1 NC_005861.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 556618 rplR 2780927 rplR Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L18 YP_007426.1 556247 D 264201 CDS YP_007427.1 46446062 2780381 556654..557157 1 NC_005861.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 557157 rpsE 2780381 rpsE Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S5 YP_007427.1 556654 D 264201 CDS YP_007428.1 46446063 2779459 557166..557618 1 NC_005861.1 strongly similar to 50S ribosomal protein L15; 50S ribosomal protein L15 557618 rplO 2779459 rplO Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L15 YP_007428.1 557166 D 264201 CDS YP_007429.2 161611306 2780034 557858..559228 1 NC_005861.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 559228 secY 2780034 secY Candidatus Protochlamydia amoebophila UWE25 preprotein translocase subunit SecY YP_007429.2 557858 D 264201 CDS YP_007430.1 46446065 2781249 559348..559716 1 NC_005861.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 559716 rpsM 2781249 rpsM Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S13 YP_007430.1 559348 D 264201 CDS YP_007431.1 46446066 2781248 559735..560142 1 NC_005861.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 560142 rpsK 2781248 rpsK Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S11 YP_007431.1 559735 D 264201 CDS YP_007432.1 46446067 2781452 560293..561408 1 NC_005861.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 561408 rpoA 2781452 rpoA Candidatus Protochlamydia amoebophila UWE25 DNA-directed RNA polymerase subunit alpha YP_007432.1 560293 D 264201 CDS YP_007433.1 46446068 2779461 561419..561847 1 NC_005861.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 561847 rplQ 2779461 rplQ Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L17 YP_007433.1 561419 D 264201 CDS YP_007434.1 46446069 2780574 562779..563798 1 NC_005861.1 strongly similar to Glyceraldehyde 3-P dehydrogenase A; glyceraldehyde 3-P dehydrogenase A 563798 gapA 2780574 gapA Candidatus Protochlamydia amoebophila UWE25 glyceraldehyde 3-P dehydrogenase A YP_007434.1 562779 D 264201 CDS YP_007435.1 46446070 2779904 complement(564296..564646) 1 NC_005861.1 hypothetical protein 564646 2779904 pc0436 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007435.1 564296 R 264201 CDS YP_007436.1 46446071 2780644 564773..565903 1 NC_005861.1 hypothetical protein 565903 2780644 pc0437 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007436.1 564773 D 264201 CDS YP_007437.1 46446072 2780645 complement(566155..568146) 1 NC_005861.1 hypothetical protein 568146 2780645 pc0438 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007437.1 566155 R 264201 CDS YP_007438.1 46446073 2780072 568603..568797 1 NC_005861.1 hypothetical protein 568797 2780072 pc0439 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007438.1 568603 D 264201 CDS YP_007439.1 46446074 2780073 568827..569585 1 NC_005861.1 hypothetical protein 569585 2780073 pc0440 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007439.1 568827 D 264201 CDS YP_007440.1 46446075 2781369 complement(569837..571003) 1 NC_005861.1 hypothetical protein 571003 2781369 pc0441 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007440.1 569837 R 264201 CDS YP_007441.1 46446076 2780463 complement(571137..571946) 1 NC_005861.1 similar to diaminopimelate epimerase; diaminopimelate epimerase 571946 dapF 2780463 dapF Candidatus Protochlamydia amoebophila UWE25 diaminopimelate epimerase YP_007441.1 571137 R 264201 CDS YP_007442.1 46446077 2780284 complement(571955..572575) 1 NC_005861.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 572575 clpP 2780284 clpP Candidatus Protochlamydia amoebophila UWE25 ATP-dependent Clp protease proteolytic subunit YP_007442.1 571955 R 264201 CDS YP_007443.1 46446078 2781422 complement(572695..574170) 1 NC_005861.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 574170 glyA 2781422 glyA Candidatus Protochlamydia amoebophila UWE25 serine hydroxymethyltransferase YP_007443.1 572695 R 264201 CDS YP_007444.1 46446079 2781370 complement(574560..575000) 1 NC_005861.1 hypothetical protein 575000 2781370 pc0445 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007444.1 574560 R 264201 CDS YP_007445.1 46446080 2779396 575537..576307 1 NC_005861.1 hypothetical protein 576307 2779396 pc0446 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007445.1 575537 D 264201 CDS YP_007446.1 46446081 2780024 complement(576348..576632) 1 NC_005861.1 hypothetical protein 576632 2780024 pc0447 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007446.1 576348 R 264201 CDS YP_007447.1 46446082 2780025 complement(576786..577460) 1 NC_005861.1 hypothetical protein 577460 2780025 pc0448 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007447.1 576786 R 264201 CDS YP_007448.1 46446083 2781374 complement(577540..578214) 1 NC_005861.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 578214 folE 2781374 folE Candidatus Protochlamydia amoebophila UWE25 GTP cyclohydrolase I YP_007448.1 577540 R 264201 CDS YP_007449.1 46446084 2780210 complement(578222..578962) 1 NC_005861.1 similar to tRNA (Guanosine-2'-O-)-methyltransferase; tRNA (guanosine-2'-O-)-methyltransferase 578962 trmH 2780210 trmH Candidatus Protochlamydia amoebophila UWE25 tRNA (guanosine-2'-O-)-methyltransferase YP_007449.1 578222 R 264201 CDS YP_007450.1 46446085 2780026 complement(579011..580597) 1 NC_005861.1 hypothetical protein 580597 2780026 pc0451 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007450.1 579011 R 264201 CDS YP_007451.1 46446086 2780766 complement(580876..582192) 1 NC_005861.1 hypothetical protein 582192 2780766 pc0452 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007451.1 580876 R 264201 CDS YP_007452.1 46446087 2781411 complement(582419..583225) 1 NC_005861.1 similar to ABC transporter substrate binding protein yaeC; ABC transporter substrate binding protein yaeC 583225 yaeC 2781411 yaeC Candidatus Protochlamydia amoebophila UWE25 ABC transporter substrate binding protein yaeC YP_007452.1 582419 R 264201 CDS YP_007453.1 46446088 2781412 complement(583222..583842) 1 NC_005861.1 strongly similar to ABC transporter permease yaeE; ABC transporter permease 583842 yaeE 2781412 yaeE Candidatus Protochlamydia amoebophila UWE25 ABC transporter permease YP_007453.1 583222 R 264201 CDS YP_007454.1 46446089 2780136 complement(583905..584930) 1 NC_005861.1 strongly similar to ABC transporter ATP-binding protein abc; ABC transporter ATP-binding protein 584930 abc 2780136 abc Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_007454.1 583905 R 264201 CDS YP_007455.1 46446090 2780439 complement(585047..586531) 1 NC_005861.1 hypothetical protein 586531 2780439 pc0456 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007455.1 585047 R 264201 CDS YP_007456.1 46446091 2780440 complement(586642..586839) 1 NC_005861.1 hypothetical protein 586839 2780440 pc0457 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007456.1 586642 R 264201 CDS YP_007457.1 46446092 2779631 complement(587087..588076) 1 NC_005861.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 588076 xerC 2779631 xerC Candidatus Protochlamydia amoebophila UWE25 site-specific tyrosine recombinase XerC YP_007457.1 587087 R 264201 CDS YP_007458.1 46446093 2781179 complement(588113..589033) 1 NC_005861.1 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 589033 elaC 2781179 elaC Candidatus Protochlamydia amoebophila UWE25 ribonuclease Z YP_007458.1 588113 R 264201 CDS YP_007459.1 46446094 2779855 complement(589035..590210) 1 NC_005861.1 similar to glpG protein; glpG protein 590210 glpG 2779855 glpG Candidatus Protochlamydia amoebophila UWE25 glpG protein YP_007459.1 589035 R 264201 CDS YP_007460.1 46446095 2779593 complement(590214..590726) 1 NC_005861.1 strongly similar to ADP-heptose synthase; ADP-heptose synthase 590726 rfaE 2779593 rfaE Candidatus Protochlamydia amoebophila UWE25 ADP-heptose synthase YP_007460.1 590214 R 264201 CDS YP_007461.1 46446096 2780671 complement(590741..593248) 1 NC_005861.1 similar to endopeptidase (ATP-dependent serine protease) La; endopeptidase (ATP-dependent serine protease) La 593248 lon 2780671 lon Candidatus Protochlamydia amoebophila UWE25 endopeptidase (ATP-dependent serine protease) La YP_007461.1 590741 R 264201 CDS YP_007462.1 46446097 2779556 594026..596164 1 NC_005861.1 hypothetical protein 596164 2779556 pc0463 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007462.1 594026 D 264201 CDS YP_007463.1 46446098 2779557 596223..598451 1 NC_005861.1 hypothetical protein 598451 2779557 pc0464 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007463.1 596223 D 264201 CDS YP_007464.1 46446099 2780935 598661..599809 1 NC_005861.1 similar to deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ); deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ) 599809 dgt 2780935 dgt Candidatus Protochlamydia amoebophila UWE25 deoxyguanosinetriphosphate triphosphohydrolase (dGTPase ) YP_007464.1 598661 D 264201 CDS YP_007465.1 46446100 2779558 599821..600489 1 NC_005861.1 hypothetical protein 600489 2779558 pc0466 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007465.1 599821 D 264201 CDS YP_007466.1 46446101 2781134 600695..600874 1 NC_005861.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 600874 rpsU 2781134 rpsU Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S21 YP_007466.1 600695 D 264201 CDS YP_007467.1 46446102 2780430 601060..602220 1 NC_005861.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 602220 dnaJ 2780430 dnaJ Candidatus Protochlamydia amoebophila UWE25 molecular chaperone DnaJ YP_007467.1 601060 D 264201 CDS YP_007468.1 46446103 2780945 complement(602355..603134) 1 NC_005861.1 hypothetical protein 603134 2780945 pc0469 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007468.1 602355 R 264201 CDS YP_007469.1 46446104 2779492 complement(603521..606148) 1 NC_005861.1 similar to multifunctional cell division protein ftsK; DNA translocase FtsK 606148 ftsK 2779492 ftsK Candidatus Protochlamydia amoebophila UWE25 DNA translocase FtsK YP_007469.1 603521 R 264201 CDS YP_007470.1 46446105 2780731 complement(606082..606855) 1 NC_005861.1 similar to bacitracin resistance protein (probable undecaprenol kinase); bacitracin resistance protein ( undecaprenol kinase) 606855 bacA 2780731 bacA Candidatus Protochlamydia amoebophila UWE25 bacitracin resistance protein ( undecaprenol kinase) YP_007470.1 606082 R 264201 CDS YP_007471.1 46446106 2780474 complement(607191..608744) 1 NC_005861.1 hypothetical protein 608744 2780474 pc0472 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007471.1 607191 R 264201 CDS YP_007472.1 46446107 2780475 608972..609778 1 NC_005861.1 hypothetical protein 609778 2780475 pc0473 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007472.1 608972 D 264201 CDS YP_007473.1 46446108 2780651 609787..610734 1 NC_005861.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 610734 hprK 2780651 hprK Candidatus Protochlamydia amoebophila UWE25 HPr kinase/phosphorylase YP_007473.1 609787 D 264201 CDS YP_007474.1 46446109 2779665 610770..611036 1 NC_005861.1 similar to phosphocarrier protein hpr (histidine-containing phosphocarrier protein of the PTS); phosphocarrier protein HPr (histidine-containing phosphocarrier protein of the PTS) 611036 ptsH 2779665 ptsH Candidatus Protochlamydia amoebophila UWE25 phosphocarrier protein HPr (histidine-containing phosphocarrier protein of the PTS) YP_007474.1 610770 D 264201 CDS YP_007475.1 46446110 2779667 611040..612818 1 NC_005861.1 similar to phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I); phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I) 612818 ptsI 2779667 ptsI Candidatus Protochlamydia amoebophila UWE25 phosphoenolpyruvate-protein phosphotransferase (PTS enzyme I) YP_007475.1 611040 D 264201 CDS YP_007476.1 46446111 2780493 complement(612933..613229) 1 NC_005861.1 hypothetical protein 613229 2780493 pc0477 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007476.1 612933 R 264201 CDS YP_007477.1 46446112 2779560 complement(614128..615696) 1 NC_005861.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 615696 dnaX 2779560 dnaX Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III subunits gamma and tau YP_007477.1 614128 R 264201 CDS YP_007478.1 46446113 2780494 615896..617305 1 NC_005861.1 hypothetical protein 617305 2780494 pc0479 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007478.1 615896 D 264201 CDS YP_007479.1 46446114 2780346 complement(617479..618996) 1 NC_005861.1 hypothetical protein 618996 2780346 pc0480 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007479.1 617479 R 264201 CDS YP_007480.1 46446115 2780347 complement(619084..619767) 1 NC_005861.1 hypothetical protein 619767 2780347 pc0481 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007480.1 619084 R 264201 CDS YP_007481.1 46446116 2781371 complement(619866..621161) 1 NC_005861.1 hypothetical protein 621161 2781371 pc0482 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007481.1 619866 R 264201 CDS YP_007482.1 46446117 2780508 complement(621413..622114) 1 NC_005861.1 hypothetical protein 622114 2780508 pc0483 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007482.1 621413 R 264201 CDS YP_007483.1 46446118 2779836 622393..623694 1 NC_005861.1 similar to phosphate starvation-inducible protein (phoH); phosphate starvation-inducible 623694 phoH 2779836 phoH Candidatus Protochlamydia amoebophila UWE25 phosphate starvation-inducible YP_007483.1 622393 D 264201 CDS YP_007484.1 46446119 2780098 623880..625175 1 NC_005861.1 similar to ATP/ADP translocase (AATP1) precursor (Arabidopsis thaliana); ATP/ADP translocase 625175 ntt_4 2780098 ntt_4 Candidatus Protochlamydia amoebophila UWE25 ATP/ADP translocase YP_007484.1 623880 D 264201 CDS YP_007485.1 46446120 2780509 625318..625818 1 NC_005861.1 hypothetical protein 625818 2780509 pc0486 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007485.1 625318 D 264201 CDS YP_007486.1 46446121 2779581 626253..626711 1 NC_005861.1 similar to mutT protein; mutT protein 626711 mutT 2779581 mutT Candidatus Protochlamydia amoebophila UWE25 mutT protein YP_007486.1 626253 D 264201 CDS YP_007487.1 46446122 2780510 complement(626793..627113) 1 NC_005861.1 hypothetical protein 627113 2780510 pc0488 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007487.1 626793 R 264201 CDS YP_007488.1 46446123 2780826 complement(627151..628173) 1 NC_005861.1 hypothetical protein 628173 2780826 pc0489 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007488.1 627151 R 264201 CDS YP_007489.1 46446124 2780424 complement(628170..628799) 1 NC_005861.1 hypothetical protein 628799 2780424 pc0490 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007489.1 628170 R 264201 CDS YP_007490.1 46446125 2780425 628909..629184 1 NC_005861.1 hypothetical protein 629184 2780425 pc0491 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007490.1 628909 D 264201 CDS YP_007491.1 46446126 2780801 complement(629289..629633) 1 NC_005861.1 hypothetical protein 629633 2780801 pc0492 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007491.1 629289 R 264201 CDS YP_007492.1 46446127 2780802 630251..630454 1 NC_005861.1 hypothetical protein 630454 2780802 pc0493 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007492.1 630251 D 264201 CDS YP_007493.1 46446128 2779943 631063..634179 1 NC_005861.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 634179 ileS 2779943 ileS Candidatus Protochlamydia amoebophila UWE25 isoleucyl-tRNA synthetase YP_007493.1 631063 D 264201 CDS YP_007494.1 46446129 2780803 634306..634530 1 NC_005861.1 hypothetical protein 634530 2780803 pc0495 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007494.1 634306 D 264201 CDS YP_007495.1 46446130 2780785 complement(634712..636676) 1 NC_005861.1 similar to signal peptidase I; signal peptidase I 636676 lepB 2780785 lepB Candidatus Protochlamydia amoebophila UWE25 signal peptidase I YP_007495.1 634712 R 264201 CDS YP_007496.1 46446131 2780046 complement(637095..637832) 1 NC_005861.1 hypothetical protein 637832 2780046 pc0497 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007496.1 637095 R 264201 CDS YP_007497.1 46446132 2779880 638378..638704 1 NC_005861.1 hypothetical protein 638704 2779880 pc0498 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007497.1 638378 D 264201 CDS YP_007498.1 46446133 2779881 complement(638785..639114) 1 NC_005861.1 hypothetical protein 639114 2779881 pc0499 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007498.1 638785 R 264201 CDS YP_007499.1 46446134 2780044 639171..639449 1 NC_005861.1 hypothetical protein 639449 2780044 pc0500 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007499.1 639171 D 264201 CDS YP_007500.1 46446135 2780045 639535..641094 1 NC_005861.1 hypothetical protein 641094 2780045 pc0501 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007500.1 639535 D 264201 CDS YP_007501.1 46446136 2779696 complement(641690..641923) 1 NC_005861.1 hypothetical protein 641923 2779696 pc0502 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007501.1 641690 R 264201 CDS YP_007502.1 46446137 2781144 641984..642397 1 NC_005861.1 similar to DNA-3-methyladenine glycosylase II; DNA-3-methyladenine glycosylase II 642397 alkA 2781144 alkA Candidatus Protochlamydia amoebophila UWE25 DNA-3-methyladenine glycosylase II YP_007502.1 641984 D 264201 CDS YP_007503.1 46446138 2779697 642551..642751 1 NC_005861.1 hypothetical protein 642751 2779697 pc0504 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007503.1 642551 D 264201 CDS YP_007504.1 46446139 2780578 642783..643139 1 NC_005861.1 hypothetical protein 643139 2780578 pc0505 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007504.1 642783 D 264201 CDS YP_007505.1 46446140 2780476 643466..643714 1 NC_005861.1 hypothetical protein 643714 2780476 pc0506 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007505.1 643466 D 264201 CDS YP_007506.1 46446141 2780477 643702..644052 1 NC_005861.1 hypothetical protein 644052 2780477 pc0507 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007506.1 643702 D 264201 CDS YP_007507.1 46446142 2780478 644064..644441 1 NC_005861.1 hypothetical protein 644441 2780478 pc0508 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007507.1 644064 D 264201 CDS YP_007508.1 46446143 2781268 644886..645074 1 NC_005861.1 hypothetical protein 645074 2781268 pc0509 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007508.1 644886 D 264201 CDS YP_007509.1 46446144 2779707 645148..645771 1 NC_005861.1 hypothetical protein 645771 2779707 pc0510 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007509.1 645148 D 264201 CDS YP_007510.1 46446145 2779708 complement(645781..645978) 1 NC_005861.1 hypothetical protein 645978 2779708 pc0511 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007510.1 645781 R 264201 CDS YP_007511.1 46446146 2780499 complement(646109..646447) 1 NC_005861.1 similar to antibiotic resistance protein; antibiotic resistance protein 646447 2780499 pc0512 Candidatus Protochlamydia amoebophila UWE25 antibiotic resistance protein YP_007511.1 646109 R 264201 CDS YP_007512.1 46446147 2780500 646473..646742 1 NC_005861.1 hypothetical protein 646742 2780500 pc0513 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007512.1 646473 D 264201 CDS YP_007513.1 46446148 2780501 646870..648495 1 NC_005861.1 hypothetical protein 648495 2780501 pc0514 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007513.1 646870 D 264201 CDS YP_007514.1 46446149 2779602 648764..648976 1 NC_005861.1 hypothetical protein 648976 2779602 pc0515 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007514.1 648764 D 264201 CDS YP_007515.1 46446150 2780348 649576..650175 1 NC_005861.1 hypothetical protein 650175 2780348 pc0516 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007515.1 649576 D 264201 CDS YP_007516.1 46446151 2780349 650172..651020 1 NC_005861.1 hypothetical protein 651020 2780349 pc0517 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007516.1 650172 D 264201 CDS YP_007517.1 46446152 2780723 651379..651753 1 NC_005861.1 strongly similar to DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase; DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase 651753 ada 2780723 ada Candidatus Protochlamydia amoebophila UWE25 DNA-6-O-methylguanine[protein]-L-cysteine S-methyltransferase YP_007517.1 651379 D 264201 CDS YP_007518.1 46446153 2780787 652552..653190 1 NC_005861.1 strongly similar to streptogramin A acetyltransferase; streptogramin A acetyltransferase 653190 vatB 2780787 vatB Candidatus Protochlamydia amoebophila UWE25 streptogramin A acetyltransferase YP_007518.1 652552 D 264201 CDS YP_007519.1 46446154 2780828 653457..653675 1 NC_005861.1 hypothetical protein 653675 2780828 pc0520 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007519.1 653457 D 264201 CDS YP_007520.1 46446155 2780829 654734..654958 1 NC_005861.1 hypothetical protein 654958 2780829 pc0521 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007520.1 654734 D 264201 CDS YP_007521.1 46446156 2779710 657339..658319 1 NC_005861.1 hypothetical protein 658319 2779710 pc0522 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007521.1 657339 D 264201 CDS YP_007522.1 46446157 2779711 658749..658964 1 NC_005861.1 hypothetical protein 658964 2779711 pc0523 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007522.1 658749 D 264201 CDS YP_007523.1 46446158 2779843 659467..659661 1 NC_005861.1 hypothetical protein 659661 2779843 pc0524 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007523.1 659467 D 264201 CDS YP_007524.1 46446159 2780214 complement(659716..659901) 1 NC_005861.1 hypothetical protein 659901 2780214 pc0525 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007524.1 659716 R 264201 CDS YP_007525.1 46446160 2780215 complement(660248..660538) 1 NC_005861.1 hypothetical protein 660538 2780215 pc0526 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007525.1 660248 R 264201 CDS YP_007526.1 46446161 2780216 660518..660730 1 NC_005861.1 hypothetical protein 660730 2780216 pc0527 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007526.1 660518 D 264201 CDS YP_007527.1 46446162 2780485 660745..661467 1 NC_005861.1 hypothetical protein 661467 2780485 pc0528 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007527.1 660745 D 264201 CDS YP_007528.1 46446163 2779600 661631..661867 1 NC_005861.1 hypothetical protein 661867 2779600 pc0529 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007528.1 661631 D 264201 CDS YP_007529.1 46446164 2779601 complement(662487..663242) 1 NC_005861.1 hypothetical protein 663242 2779601 pc0530 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007529.1 662487 R 264201 CDS YP_007530.1 46446165 2779645 663716..663994 1 NC_005861.1 similar to chloramphenicol 3-O phosphotransferase; chloramphenicol 3-O phosphotransferase 663994 cpt 2779645 cpt Candidatus Protochlamydia amoebophila UWE25 chloramphenicol 3-O phosphotransferase YP_007530.1 663716 D 264201 CDS YP_007531.1 46446166 2780099 complement(664721..665398) 1 NC_005861.1 hypothetical protein 665398 2780099 pc0532 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007531.1 664721 R 264201 CDS YP_007532.1 46446167 2780100 complement(665760..665960) 1 NC_005861.1 hypothetical protein 665960 2780100 pc0533 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007532.1 665760 R 264201 CDS YP_007533.1 46446168 2780101 666633..667100 1 NC_005861.1 hypothetical protein 667100 2780101 pc0534 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007533.1 666633 D 264201 CDS YP_007534.1 46446169 2780748 667571..667804 1 NC_005861.1 hypothetical protein 667804 2780748 pc0535 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007534.1 667571 D 264201 CDS YP_007535.1 46446170 2779514 668299..669543 1 NC_005861.1 hypothetical protein 669543 2779514 pc0536 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007535.1 668299 D 264201 CDS YP_007536.1 46446171 2779515 669743..671335 1 NC_005861.1 hypothetical protein 671335 2779515 pc0537 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007536.1 669743 D 264201 CDS YP_007537.1 46446172 2779574 671495..672583 1 NC_005861.1 similar to RTX-toxin, partial length; RTX-toxin, partial length 672583 rtxA 2779574 rtxA Candidatus Protochlamydia amoebophila UWE25 RTX-toxin, partial length YP_007537.1 671495 D 264201 CDS YP_007538.1 46446173 2779900 complement(672733..672972) 1 NC_005861.1 hypothetical protein 672972 2779900 pc0539 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007538.1 672733 R 264201 CDS YP_007539.1 46446174 2779901 complement(673318..673626) 1 NC_005861.1 hypothetical protein 673626 2779901 pc0540 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007539.1 673318 R 264201 CDS YP_007540.1 46446175 2780318 complement(673720..674190) 1 NC_005861.1 similar to Peptide deformylase; peptide deformylase 674190 def 2780318 def Candidatus Protochlamydia amoebophila UWE25 peptide deformylase YP_007540.1 673720 R 264201 CDS YP_007541.1 46446176 2779857 674366..674797 1 NC_005861.1 hypothetical protein 674797 2779857 pc0542 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007541.1 674366 D 264201 CDS YP_007542.1 46446177 2780205 675386..676417 1 NC_005861.1 strongly similar to oxidoreductase MocA family; MocA family oxidoreductase 676417 mocA 2780205 mocA Candidatus Protochlamydia amoebophila UWE25 MocA family oxidoreductase YP_007542.1 675386 D 264201 CDS YP_007543.1 46446178 2780675 complement(676516..677739) 1 NC_005861.1 similar to nasA protein; to nasA protein 677739 nasA 2780675 nasA Candidatus Protochlamydia amoebophila UWE25 to nasA protein YP_007543.1 676516 R 264201 CDS YP_007544.1 46446179 2779858 678519..679436 1 NC_005861.1 hypothetical protein 679436 2779858 pc0545 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007544.1 678519 D 264201 CDS YP_007545.1 46446180 2779851 679625..680521 1 NC_005861.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 680521 map 2779851 map Candidatus Protochlamydia amoebophila UWE25 methionine aminopeptidase YP_007545.1 679625 D 264201 CDS YP_007546.1 46446181 2781382 complement(680505..680702) 1 NC_005861.1 hypothetical protein 680702 2781382 pc0547 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007546.1 680505 R 264201 CDS YP_007547.1 46446182 2779591 complement(680787..681143) 1 NC_005861.1 similar to peptide chain release factor 2; peptide chain release factor 2 681143 rf-2 2779591 rf-2 Candidatus Protochlamydia amoebophila UWE25 peptide chain release factor 2 YP_007547.1 680787 R 264201 CDS YP_007548.1 46446183 2780728 681224..681979 1 NC_005861.1 hypothetical protein 681979 2780728 pc0549 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007548.1 681224 D 264201 CDS YP_007549.1 46446184 2781018 682304..683491 1 NC_005861.1 similar to multidrug-efflux transport protein acrA; multidrug-efflux transport protein acrA 683491 acrA 2781018 acrA Candidatus Protochlamydia amoebophila UWE25 multidrug-efflux transport protein acrA YP_007549.1 682304 D 264201 CDS YP_007550.1 46446185 2780721 683488..686601 1 NC_005861.1 strongly similar to multidrug-efflux transport protein, acrB; multidrug ABC transporter 686601 acrB 2780721 acrB Candidatus Protochlamydia amoebophila UWE25 multidrug ABC transporter YP_007550.1 683488 D 264201 CDS YP_007551.1 46446186 2779619 686609..688078 1 NC_005861.1 similar to outer membrane protein, componenet of multidrug efflux systems; outer membrane protein, componenet of multidrug efflux systems 688078 oprK 2779619 oprK Candidatus Protochlamydia amoebophila UWE25 outer membrane protein, componenet of multidrug efflux systems YP_007551.1 686609 D 264201 CDS YP_007552.1 46446187 2780729 complement(688120..688857) 1 NC_005861.1 hypothetical protein 688857 2780729 pc0553 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007552.1 688120 R 264201 CDS YP_007553.1 46446188 2780730 complement(688976..691048) 1 NC_005861.1 hypothetical protein 691048 2780730 pc0554 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007553.1 688976 R 264201 CDS YP_007554.1 46446189 2780817 complement(691066..691983) 1 NC_005861.1 similar to dTDP-glucose 4,6-dehydratase, rfbB; dTDP-glucose 4,6-dehydratase, rfbB 691983 rfbB 2780817 rfbB Candidatus Protochlamydia amoebophila UWE25 dTDP-glucose 4,6-dehydratase, rfbB YP_007554.1 691066 R 264201 CDS YP_007555.1 46446190 2781140 complement(692337..692519) 1 NC_005861.1 hypothetical protein 692519 2781140 pc0556 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007555.1 692337 R 264201 CDS YP_007556.1 46446191 2780872 692797..693012 1 NC_005861.1 hypothetical protein 693012 2780872 pc0557 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007556.1 692797 D 264201 CDS YP_007557.1 46446192 2780873 complement(693457..693726) 1 NC_005861.1 hypothetical protein 693726 2780873 pc0558 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007557.1 693457 R 264201 CDS YP_007558.1 46446193 2780693 693778..694140 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain A; NADH-ubiquinone oxidoreductase chain A 694140 nuoA 2780693 nuoA Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain A YP_007558.1 693778 D 264201 CDS YP_007559.1 46446194 2780694 694131..694625 1 NC_005861.1 strongly similar to NADH-ubiquinone oxidoreductase chain B; NADH-ubiquinone oxidoreductase subunit B 694625 nuoB 2780694 nuoB Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase subunit B YP_007559.1 694131 D 264201 CDS YP_007560.1 46446195 2779447 694622..695146 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain C/D; NADH-ubiquinone oxidoreductase chain C/D 695146 nuoC 2779447 nuoC Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain C/D YP_007560.1 694622 D 264201 CDS YP_007561.1 46446196 2779448 695130..696338 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain C/D; NADH-ubiquinone oxidoreductase chain C/D 696338 nuoD 2779448 nuoD Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain C/D YP_007561.1 695130 D 264201 CDS YP_007562.1 46446197 2779622 696374..696853 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain E; NADH-ubiquinone oxidoreductase chain E 696853 nuoE 2779622 nuoE Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain E YP_007562.1 696374 D 264201 CDS YP_007563.1 46446198 2779623 696846..698144 1 NC_005861.1 strongly similar to NADH-ubiquinone oxidoreductase chain F; NADH-ubiquinone oxidoreductase subunit F 698144 nuoF 2779623 nuoF Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase subunit F YP_007563.1 696846 D 264201 CDS YP_007564.1 46446199 2779624 698148..700469 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain G; NADH-ubiquinone oxidoreductase chain G 700469 nuoG 2779624 nuoG Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain G YP_007564.1 698148 D 264201 CDS YP_007565.1 46446200 2781137 700466..701443 1 NC_005861.1 strongly similar to NADH-ubiquinone oxidoreductase chain H; NADH-ubiquinone oxidoreductase subunit H 701443 nuoH 2781137 nuoH Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase subunit H YP_007565.1 700466 D 264201 CDS YP_007566.1 46446201 2781138 701487..701918 1 NC_005861.1 strongly similar to NADH-ubiquinone oxidoreductase chain I; NADH-ubiquinone oxidoreductase subunit I 701918 nuoI 2781138 nuoI Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase subunit I YP_007566.1 701487 D 264201 CDS YP_007567.1 46446202 2781139 701922..702434 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain J; NADH-ubiquinone oxidoreductase chain J 702434 nuoJ 2781139 nuoJ Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain J YP_007567.1 701922 D 264201 CDS YP_007568.1 46446203 2781230 702434..702733 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain K; NADH-ubiquinone oxidoreductase chain K 702733 nuoK 2781230 nuoK Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain K YP_007568.1 702434 D 264201 CDS YP_007569.1 46446204 2781231 702735..704621 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain L; NADH-ubiquinone oxidoreductase chain L 704621 nuoL 2781231 nuoL Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain L YP_007569.1 702735 D 264201 CDS YP_007570.1 46446205 2781232 704614..706059 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain M; NADH-ubiquinone oxidoreductase chain M 706059 nuoM 2781232 nuoM Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain M YP_007570.1 704614 D 264201 CDS YP_007571.1 46446206 2781353 706056..707498 1 NC_005861.1 similar to NADH-ubiquinone oxidoreductase chain N; NADH-ubiquinone oxidoreductase chain N 707498 nuoN 2781353 nuoN Candidatus Protochlamydia amoebophila UWE25 NADH-ubiquinone oxidoreductase chain N YP_007571.1 706056 D 264201 CDS YP_007572.1 46446207 2780641 complement(707544..708398) 1 NC_005861.1 hypothetical protein 708398 2780641 pc0573 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007572.1 707544 R 264201 CDS YP_007573.1 46446208 2780642 708523..708729 1 NC_005861.1 hypothetical protein 708729 2780642 pc0574 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007573.1 708523 D 264201 CDS YP_007574.1 46446209 2780643 708990..710018 1 NC_005861.1 hypothetical protein 710018 2780643 pc0575 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007574.1 708990 D 264201 CDS YP_007575.1 46446210 2780669 710022..710984 1 NC_005861.1 hypothetical protein 710984 2780669 pc0576 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007575.1 710022 D 264201 CDS YP_007576.1 46446211 2780911 complement(711124..711729) 1 NC_005861.1 hypothetical protein 711729 2780911 pc0577 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007576.1 711124 R 264201 CDS YP_007577.1 46446212 2780912 711978..713006 1 NC_005861.1 hypothetical protein 713006 2780912 pc0578 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007577.1 711978 D 264201 CDS YP_007578.1 46446213 2780609 complement(713169..713774) 1 NC_005861.1 hypothetical protein 713774 2780609 pc0579 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007578.1 713169 R 264201 CDS YP_007579.1 46446214 2780610 714021..715025 1 NC_005861.1 hypothetical protein 715025 2780610 pc0580 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007579.1 714021 D 264201 CDS YP_007580.1 46446215 2780607 complement(715059..717281) 1 NC_005861.1 hypothetical protein 717281 2780607 pc0581 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007580.1 715059 R 264201 CDS YP_007581.1 46446216 2780608 717759..718631 1 NC_005861.1 hypothetical protein 718631 2780608 pc0582 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007581.1 717759 D 264201 CDS YP_007582.1 46446217 2779820 718642..718980 1 NC_005861.1 similar to protein kinase C inhibitor 1; protein kinase C inhibitor 1 718980 pckI 2779820 pckI Candidatus Protochlamydia amoebophila UWE25 protein kinase C inhibitor 1 YP_007582.1 718642 D 264201 CDS YP_007583.1 46446218 2781399 719062..719631 1 NC_005861.1 hypothetical protein 719631 2781399 pc0584 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007583.1 719062 D 264201 CDS YP_007584.1 46446219 2779615 719625..721367 1 NC_005861.1 hypothetical protein 721367 2779615 pc0585 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007584.1 719625 D 264201 CDS YP_007585.1 46446220 2779616 721591..723264 1 NC_005861.1 hypothetical protein 723264 2779616 pc0586 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007585.1 721591 D 264201 CDS YP_007586.1 46446221 2779617 723285..724478 1 NC_005861.1 hypothetical protein 724478 2779617 pc0587 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007586.1 723285 D 264201 CDS YP_007587.1 46446222 2780676 complement(724720..725460) 1 NC_005861.1 similar to ATP-binding cassette protein, nasD; ATP-binding cassette protein, nasD 725460 nasD 2780676 nasD Candidatus Protochlamydia amoebophila UWE25 ATP-binding cassette protein, nasD YP_007587.1 724720 R 264201 CDS YP_007588.1 46446223 2780308 725868..727151 1 NC_005861.1 similar to aromatic amino acid-specific transport protein; aromatic amino acid-specific transport protein 727151 tyrP_3 2780308 tyrP_3 Candidatus Protochlamydia amoebophila UWE25 aromatic amino acid-specific transport protein YP_007588.1 725868 D 264201 CDS YP_007589.1 46446224 2780783 727168..727647 1 NC_005861.1 hypothetical protein 727647 2780783 pc0590 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007589.1 727168 D 264201 CDS YP_007590.1 46446225 2780432 727667..729502 1 NC_005861.1 similar to heat shock protein 70 (chaperone protein dnaK); molecular chaperone DnaK 729502 dnaK 2780432 dnaK Candidatus Protochlamydia amoebophila UWE25 molecular chaperone DnaK YP_007590.1 727667 D 264201 CDS YP_007591.1 46446226 2780330 complement(730009..730449) 1 NC_005861.1 hypothetical protein 730449 2780330 pc0592 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007591.1 730009 R 264201 CDS YP_007592.1 46446227 2780331 complement(730554..732146) 1 NC_005861.1 hypothetical protein 732146 2780331 pc0593 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007592.1 730554 R 264201 CDS YP_007593.1 46446228 2780543 732478..732747 1 NC_005861.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 732747 infA 2780543 infA Candidatus Protochlamydia amoebophila UWE25 translation initiation factor IF-1 YP_007593.1 732478 D 264201 CDS YP_007594.1 46446229 2780753 732977..734161 1 NC_005861.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 734161 tuf 2780753 tuf Candidatus Protochlamydia amoebophila UWE25 elongation factor Tu YP_007594.1 732977 D 264201 CDS YP_007595.1 46446230 2780406 734326..734517 1 NC_005861.1 hypothetical protein 734517 2780406 pc0596 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007595.1 734326 D 264201 CDS YP_007596.1 46446231 2781197 734520..734807 1 NC_005861.1 similar to preprotein translocase SecE; preprotein translocase SecE 734807 secE 2781197 secE Candidatus Protochlamydia amoebophila UWE25 preprotein translocase SecE YP_007596.1 734520 D 264201 CDS YP_007597.1 46446232 2779947 734868..735071 1 NC_005861.1 similar to transcription antitermination factor NusG; transcription antitermination factor NusG 735071 nusG 2779947 nusG Candidatus Protochlamydia amoebophila UWE25 transcription antitermination factor NusG YP_007597.1 734868 D 264201 CDS YP_007598.1 46446233 2779948 735041..735415 1 NC_005861.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 735415 nusG 2779948 nusG Candidatus Protochlamydia amoebophila UWE25 transcription antitermination protein NusG YP_007598.1 735041 D 264201 CDS YP_007599.1 46446234 2781035 735642..736070 1 NC_005861.1 strongly similar to 50S ribosomal protein L11; 50S ribosomal protein L11 736070 rplK 2781035 rplK Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L11 YP_007599.1 735642 D 264201 CDS YP_007600.1 46446235 2780868 736081..736791 1 NC_005861.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 736791 rplA 2780868 rplA Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L1 YP_007600.1 736081 D 264201 CDS YP_007601.1 46446236 2779539 736796..737341 1 NC_005861.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 737341 rplJ 2779539 rplJ Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L10 YP_007601.1 736796 D 264201 CDS YP_007602.1 46446237 2781036 737402..737791 1 NC_005861.1 strongly similar to 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 737791 rplL 2781036 rplL Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L7/L12 YP_007602.1 737402 D 264201 CDS YP_007603.1 46446238 2781453 738287..742051 1 NC_005861.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 742051 rpoB 2781453 rpoB Candidatus Protochlamydia amoebophila UWE25 DNA-directed RNA polymerase subunit beta YP_007603.1 738287 D 264201 CDS YP_007604.1 46446239 2780141 742175..746341 1 NC_005861.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 746341 rpoC 2780141 rpoC Candidatus Protochlamydia amoebophila UWE25 DNA-directed RNA polymerase subunit beta' YP_007604.1 742175 D 264201 CDS YP_007605.1 46446240 2780791 746750..747217 1 NC_005861.1 strongly similar to peptidoglycan-associated lipoprotein precursor (pal); peptidoglycan-associated lipoprotein (pal) 747217 pal 2780791 pal Candidatus Protochlamydia amoebophila UWE25 peptidoglycan-associated lipoprotein (pal) YP_007605.1 746750 D 264201 CDS YP_007606.1 46446241 2780407 complement(747716..749878) 1 NC_005861.1 hypothetical protein 749878 2780407 pc0607 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007606.1 747716 R 264201 CDS YP_007607.1 46446242 2780408 750367..750549 1 NC_005861.1 hypothetical protein 750549 2780408 pc0608 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007607.1 750367 D 264201 CDS YP_007608.1 46446243 2780603 complement(750698..752383) 1 NC_005861.1 hypothetical protein 752383 2780603 pc0609 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007608.1 750698 R 264201 CDS YP_007609.1 46446244 2779478 complement(752406..752990) 1 NC_005861.1 strongly similar to septum formation protein; septum formation protein 752990 maf 2779478 maf Candidatus Protochlamydia amoebophila UWE25 septum formation protein YP_007609.1 752406 R 264201 CDS YP_007610.1 46446245 2780221 complement(753002..753298) 1 NC_005861.1 hypothetical protein 753298 2780221 pc0611 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007610.1 753002 R 264201 CDS YP_007611.1 46446246 2780222 753393..753650 1 NC_005861.1 hypothetical protein 753650 2780222 pc0612 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007611.1 753393 D 264201 CDS YP_007612.1 46446247 2779956 753723..753923 1 NC_005861.1 hypothetical protein 753923 2779956 pc0613 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007612.1 753723 D 264201 CDS YP_007613.1 46446248 2779957 754039..754347 1 NC_005861.1 hypothetical protein 754347 2779957 pc0614 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007613.1 754039 D 264201 CDS YP_007614.1 46446249 2780279 complement(754386..755765) 1 NC_005861.1 hypothetical protein 755765 2780279 pc0615 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007614.1 754386 R 264201 CDS YP_007615.1 46446250 2779865 complement(756035..757711) 1 NC_005861.1 similar to 60 kDa cysteine-rich outer membrane protein; 60 kDa cysteine-rich outer membrane protein 757711 omcB 2779865 omcB Candidatus Protochlamydia amoebophila UWE25 60 kDa cysteine-rich outer membrane protein YP_007615.1 756035 R 264201 CDS YP_007616.1 46446251 2779949 complement(758054..758323) 1 NC_005861.1 similar to 9 kDa cysteine-rich outer membrane protein; 9 kDa cysteine-rich outer membrane protein 758323 omcA 2779949 omcA Candidatus Protochlamydia amoebophila UWE25 9 kDa cysteine-rich outer membrane protein YP_007616.1 758054 R 264201 CDS YP_007617.1 46446252 2780280 complement(758693..759532) 1 NC_005861.1 hypothetical protein 759532 2780280 pc0618 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007617.1 758693 R 264201 CDS YP_007618.1 46446253 2779454 complement(759582..761489) 1 NC_005861.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 761489 dxs 2779454 dxs Candidatus Protochlamydia amoebophila UWE25 1-deoxy-D-xylulose-5-phosphate synthase YP_007618.1 759582 R 264201 CDS YP_007619.1 46446254 2780266 complement(761582..761860) 1 NC_005861.1 similar to exodeoxyribonuclease VII, small chain; exodeoxyribonuclease VII, small chain 761860 xseB 2780266 xseB Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease VII, small chain YP_007619.1 761582 R 264201 CDS YP_007620.1 46446255 2779633 complement(761853..763301) 1 NC_005861.1 similar to exodeoxyribonuclease VII, large chain; exodeoxyribonuclease VII, large chain 763301 xseA 2779633 xseA Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease VII, large chain YP_007620.1 761853 R 264201 CDS YP_007621.1 46446256 2780876 763580..764959 1 NC_005861.1 similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent 764959 dagA 2780876 dagA Candidatus Protochlamydia amoebophila UWE25 D-alanine/glycine transport protein, sodium-dependent YP_007621.1 763580 D 264201 CDS YP_007622.1 46446257 2780638 complement(764994..765701) 1 NC_005861.1 strongly similar to endonuclease V (deoxyinosine 3'endonuclease); endonuclease V 765701 nfi 2780638 nfi Candidatus Protochlamydia amoebophila UWE25 endonuclease V YP_007622.1 764994 R 264201 CDS YP_007623.1 46446258 2780685 complement(765737..765928) 1 NC_005861.1 hypothetical protein 765928 2780685 pc0624 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007623.1 765737 R 264201 CDS YP_007624.1 46446259 2780343 766207..766698 1 NC_005861.1 hypothetical protein 766698 2780343 pc0625 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007624.1 766207 D 264201 CDS YP_007625.1 46446260 2780344 766702..767376 1 NC_005861.1 hypothetical protein 767376 2780344 pc0626 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007625.1 766702 D 264201 CDS YP_007626.1 46446261 2780345 767409..767762 1 NC_005861.1 hypothetical protein 767762 2780345 pc0627 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007626.1 767409 D 264201 CDS YP_007627.1 46446262 2780711 complement(767989..768606) 1 NC_005861.1 hypothetical protein 768606 2780711 pc0628 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007627.1 767989 R 264201 CDS YP_007628.1 46446263 2780338 769143..769373 1 NC_005861.1 hypothetical protein 769373 2780338 pc0629 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007628.1 769143 D 264201 CDS YP_007629.1 46446264 2780339 complement(769488..771008) 1 NC_005861.1 similar to Thermostable carboxypeptidase 1; thermostable carboxypeptidase 1 771008 2780339 pc0630 Candidatus Protochlamydia amoebophila UWE25 thermostable carboxypeptidase 1 YP_007629.1 769488 R 264201 CDS YP_007630.1 46446265 2780973 complement(771053..773578) 1 NC_005861.1 similar to alanine racemase; bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase 773578 alr 2780973 alr Candidatus Protochlamydia amoebophila UWE25 bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase YP_007630.1 771053 R 264201 CDS YP_007631.1 46446266 2780272 774091..774291 1 NC_005861.1 hypothetical protein 774291 2780272 pc0632 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007631.1 774091 D 264201 CDS YP_007632.1 46446267 2780722 complement(774369..777446) 1 NC_005861.1 similar to acriflavin resistance protein D; acriflavin resistance protein D 777446 acrD 2780722 acrD Candidatus Protochlamydia amoebophila UWE25 acriflavin resistance protein D YP_007632.1 774369 R 264201 CDS YP_007633.1 46446268 2780273 complement(777443..778255) 1 NC_005861.1 hypothetical protein 778255 2780273 pc0634 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007633.1 777443 R 264201 CDS YP_007634.1 46446269 2781092 complement(778257..779525) 1 NC_005861.1 similar to outer membrane protein TolC; outer membrane protein TolC 779525 tolC 2781092 tolC Candidatus Protochlamydia amoebophila UWE25 outer membrane protein TolC YP_007634.1 778257 R 264201 CDS YP_007635.1 46446270 2780274 complement(779863..780945) 1 NC_005861.1 hypothetical protein 780945 2780274 pc0636 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007635.1 779863 R 264201 CDS YP_007636.1 46446271 2780287 complement(780945..782096) 1 NC_005861.1 hypothetical protein 782096 2780287 pc0637 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007636.1 780945 R 264201 CDS YP_007637.1 46446272 2780902 782311..782646 1 NC_005861.1 hypothetical protein 782646 2780902 pc0638 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007637.1 782311 D 264201 CDS YP_007638.1 46446273 2780903 782621..783997 1 NC_005861.1 hypothetical protein 783997 2780903 pc0639 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007638.1 782621 D 264201 CDS YP_007639.1 46446274 2779491 784324..787074 1 NC_005861.1 strongly similar to cell division protein FtsH; cell division protein FtsH 787074 ftsH 2779491 ftsH Candidatus Protochlamydia amoebophila UWE25 cell division protein FtsH YP_007639.1 784324 D 264201 CDS YP_007640.1 46446275 2781236 complement(787457..788203) 1 NC_005861.1 hypothetical protein 788203 2781236 pc0641 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007640.1 787457 R 264201 CDS YP_007641.1 46446276 2780663 complement(788213..789022) 1 NC_005861.1 similar to beta-1,4-galactosyltransferase; beta-1,4-galactosyltransferase 789022 cps 2780663 cps Candidatus Protochlamydia amoebophila UWE25 beta-1,4-galactosyltransferase YP_007641.1 788213 R 264201 CDS YP_007642.1 46446277 2779810 complement(789625..791733) 1 NC_005861.1 strongly similar to polyribonucleotide nucleotidyltransferase; polynucleotide phosphorylase 791733 pnp 2779810 pnp Candidatus Protochlamydia amoebophila UWE25 polynucleotide phosphorylase YP_007642.1 789625 R 264201 CDS YP_007643.1 46446278 2779882 complement(792333..792602) 1 NC_005861.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 792602 rpsO 2779882 rpsO Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S15 YP_007643.1 792333 R 264201 CDS YP_007644.1 46446279 2781237 complement(793583..793858) 1 NC_005861.1 hypothetical protein 793858 2781237 pc0645 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007644.1 793583 R 264201 CDS YP_007645.1 46446280 2780812 complement(794065..794433) 1 NC_005861.1 hypothetical protein 794433 2780812 pc0646 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007645.1 794065 R 264201 CDS YP_007646.1 46446281 2780813 795065..795748 1 NC_005861.1 hypothetical protein 795748 2780813 pc0647 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007646.1 795065 D 264201 CDS YP_007647.1 46446282 2780800 795748..796248 1 NC_005861.1 hypothetical protein 796248 2780800 pc0648 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007647.1 795748 D 264201 CDS YP_007648.1 46446283 2780658 796288..796545 1 NC_005861.1 hypothetical protein 796545 2780658 pc0649 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007648.1 796288 D 264201 CDS YP_007649.1 46446284 2780659 complement(796529..797716) 1 NC_005861.1 hypothetical protein 797716 2780659 pc0650 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007649.1 796529 R 264201 CDS YP_007650.1 46446285 2780822 797960..798313 1 NC_005861.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 798313 rpmE2 2780822 rpmE2 Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L31 YP_007650.1 797960 D 264201 CDS YP_007651.1 46446286 2779420 798538..799617 1 NC_005861.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 799617 prfA 2779420 prfA Candidatus Protochlamydia amoebophila UWE25 peptide chain release factor 1 YP_007651.1 798538 D 264201 CDS YP_007652.1 46446287 2781343 799626..800465 1 NC_005861.1 HemK; PrmC; transfers a methyl group from S-adenosyl-methionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB possibly stimulating release of completed polypeptide chains; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 800465 hemK 2781343 hemK Candidatus Protochlamydia amoebophila UWE25 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_007652.1 799626 D 264201 CDS YP_007653.1 46446288 2780799 800667..802031 1 NC_005861.1 strongly similar to signal recognition particle chain ffh; signal recognition particle protein 802031 ffh 2780799 ffh Candidatus Protochlamydia amoebophila UWE25 signal recognition particle protein YP_007653.1 800667 D 264201 CDS YP_007654.1 46446289 2779883 802022..802342 1 NC_005861.1 similar to 30S ribosomal protein S16; 30S ribosomal protein S16 802342 rpsP 2779883 rpsP Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S16 YP_007654.1 802022 D 264201 CDS YP_007655.1 46446290 2780209 802349..803017 1 NC_005861.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 803017 trmD 2780209 trmD Candidatus Protochlamydia amoebophila UWE25 tRNA (guanine-N(1)-)-methyltransferase YP_007655.1 802349 D 264201 CDS YP_007656.1 46446291 2780928 803109..803516 1 NC_005861.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 803516 rplS 2780928 rplS Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L19 YP_007656.1 803109 D 264201 CDS YP_007657.1 46446292 2780479 803632..804300 1 NC_005861.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 804300 rnhB 2780479 rnhB Candidatus Protochlamydia amoebophila UWE25 ribonuclease HII YP_007657.1 803632 D 264201 CDS YP_007658.1 46446293 2780660 804452..804976 1 NC_005861.1 hypothetical protein 804976 2780660 pc0659 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007658.1 804452 D 264201 CDS YP_007659.1 46446294 2779885 805188..806072 1 NC_005861.1 hypothetical protein 806072 2779885 pc0660 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007659.1 805188 D 264201 CDS YP_007660.1 46446295 2779468 complement(806676..806876) 1 NC_005861.1 hypothetical protein 806876 2779468 pc0661 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007660.1 806676 R 264201 CDS YP_007661.1 46446296 2780165 806950..807543 1 NC_005861.1 similar to guanylate kinase; guanylate kinase 807543 gmk 2780165 gmk Candidatus Protochlamydia amoebophila UWE25 guanylate kinase YP_007661.1 806950 D 264201 CDS YP_007662.1 46446297 2779469 807568..807891 1 NC_005861.1 hypothetical protein 807891 2779469 pc0663 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007662.1 807568 D 264201 CDS YP_007663.1 46446298 2780523 807906..808499 1 NC_005861.1 hypothetical protein 808499 2780523 pc0664 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007663.1 807906 D 264201 CDS YP_007664.1 46446299 2781150 808477..810573 1 NC_005861.1 similar to methionine-tRNA ligase; methionine-tRNA ligase 810573 metG 2781150 metG Candidatus Protochlamydia amoebophila UWE25 methionine-tRNA ligase YP_007664.1 808477 D 264201 CDS YP_007665.1 46446300 2780820 complement(810803..811078) 1 NC_005861.1 required for 70S ribosome assembly; 50S ribosomal protein L28 811078 rpmB 2780820 rpmB Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L28 YP_007665.1 810803 R 264201 CDS YP_007666.1 46446301 2780524 complement(811071..811286) 1 NC_005861.1 hypothetical protein 811286 2780524 pc0667 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007666.1 811071 R 264201 CDS YP_007667.1 46446302 2780525 complement(811268..811594) 1 NC_005861.1 hypothetical protein 811594 2780525 pc0668 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007667.1 811268 R 264201 CDS YP_007668.1 46446303 2780576 complement(811940..813424) 1 NC_005861.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 813424 gatB 2780576 gatB Candidatus Protochlamydia amoebophila UWE25 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_007668.1 811940 R 264201 CDS YP_007669.1 46446304 2780575 complement(813421..814890) 1 NC_005861.1 strongly similar to glutamyl-tRNA(Gln) amidotransferase chain A; glutamyl-tRNA(Gln) amidotransferase subunit A 814890 gatA 2780575 gatA Candidatus Protochlamydia amoebophila UWE25 glutamyl-tRNA(Gln) amidotransferase subunit A YP_007669.1 813421 R 264201 CDS YP_007670.1 46446305 2780946 complement(814907..815206) 1 NC_005861.1 similar to glutamyl-tRNA(Gln) amidotransferase chain C; glutamyl-tRNA(Gln) amidotransferase chain C 815206 gatC 2780946 gatC Candidatus Protochlamydia amoebophila UWE25 glutamyl-tRNA(Gln) amidotransferase chain C YP_007670.1 814907 R 264201 CDS YP_007671.1 46446306 2780532 816135..817550 1 NC_005861.1 similar to photolyase; photolyase 817550 phrB 2780532 phrB Candidatus Protochlamydia amoebophila UWE25 photolyase YP_007671.1 816135 D 264201 CDS YP_007672.1 46446307 2779438 817677..818528 1 NC_005861.1 hypothetical protein 818528 2779438 pc0673 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007672.1 817677 D 264201 CDS YP_007673.1 46446308 2779475 complement(818587..822051) 1 NC_005861.1 hypothetical protein 822051 2779475 pc0674 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007673.1 818587 R 264201 CDS YP_007674.1 46446309 2779476 complement(822370..823332) 1 NC_005861.1 hypothetical protein 823332 2779476 pc0675 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007674.1 822370 R 264201 CDS YP_007675.1 46446310 2780144 823703..825616 1 NC_005861.1 hypothetical protein 825616 2780144 pc0676 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007675.1 823703 D 264201 CDS YP_007676.1 46446311 2779494 complement(825630..827255) 1 NC_005861.1 similar to DNA repair protein RecN; DNA repair protein RecN 827255 recN 2779494 recN Candidatus Protochlamydia amoebophila UWE25 DNA repair protein RecN YP_007676.1 825630 R 264201 CDS YP_007677.1 46446312 2780145 complement(827261..827701) 1 NC_005861.1 hypothetical protein 827701 2780145 pc0678 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007677.1 827261 R 264201 CDS YP_007678.1 46446313 2780480 complement(827796..828701) 1 NC_005861.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 828701 rnhB 2780480 rnhB Candidatus Protochlamydia amoebophila UWE25 ribonuclease HIII YP_007678.1 827796 R 264201 CDS YP_007679.1 46446314 2780673 828892..829380 1 NC_005861.1 hypothetical protein 829380 2780673 pc0680 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007679.1 828892 D 264201 CDS YP_007680.1 46446315 2780674 829377..830546 1 NC_005861.1 hypothetical protein 830546 2780674 pc0681 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007680.1 829377 D 264201 CDS YP_007681.1 46446316 2780742 complement(830587..831375) 1 NC_005861.1 similar to tRNA-pseudouridine synthase I; tRNA-pseudouridine synthase I 831375 truA 2780742 truA Candidatus Protochlamydia amoebophila UWE25 tRNA-pseudouridine synthase I YP_007681.1 830587 R 264201 CDS YP_007682.1 46446317 2780701 complement(831348..831947) 1 NC_005861.1 hypothetical protein 831947 2780701 pc0683 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007682.1 831348 R 264201 CDS YP_007683.1 46446318 2780362 complement(831979..832575) 1 NC_005861.1 hypothetical protein 832575 2780362 pc0684 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007683.1 831979 R 264201 CDS YP_007684.1 46446319 2779795 complement(833564..834826) 1 NC_005861.1 catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis; L,L-diaminopimelate aminotransferase 834826 aspC 2779795 aspC Candidatus Protochlamydia amoebophila UWE25 L,L-diaminopimelate aminotransferase YP_007684.1 833564 R 264201 CDS YP_007685.1 46446320 2780461 complement(834792..835694) 1 NC_005861.1 similar to dihydrodipicolinate synthase; dihydrodipicolinate synthase 835694 dapA 2780461 dapA Candidatus Protochlamydia amoebophila UWE25 dihydrodipicolinate synthase YP_007685.1 834792 R 264201 CDS YP_007686.1 46446321 2780462 complement(835716..836372) 1 NC_005861.1 similar to dihydrodipicolinate reductase; dihydrodipicolinate reductase 836372 dapB 2780462 dapB Candidatus Protochlamydia amoebophila UWE25 dihydrodipicolinate reductase YP_007686.1 835716 R 264201 CDS YP_007687.1 46446322 2780363 complement(836384..837508) 1 NC_005861.1 hypothetical protein 837508 2780363 pc0688 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007687.1 836384 R 264201 CDS YP_007688.1 46446323 2781075 complement(837508..839673) 1 NC_005861.1 similar to exodeoxyribonuclease V; exodeoxyribonuclease V 839673 recD 2781075 recD Candidatus Protochlamydia amoebophila UWE25 exodeoxyribonuclease V YP_007688.1 837508 R 264201 CDS YP_007689.1 46446324 2780111 839989..841767 1 NC_005861.1 synthesizes RNA primers at the replication forks; DNA primase 841767 dnaG 2780111 dnaG Candidatus Protochlamydia amoebophila UWE25 DNA primase YP_007689.1 839989 D 264201 CDS YP_007690.1 46446325 2780364 841764..842180 1 NC_005861.1 hypothetical protein 842180 2780364 pc0691 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007690.1 841764 D 264201 CDS YP_007691.1 46446326 2779799 842384..842677 1 NC_005861.1 hypothetical protein 842677 2779799 pc0692 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007691.1 842384 D 264201 CDS YP_007692.1 46446327 2781423 complement(843019..846072) 1 NC_005861.1 strongly similar to glycyl-tRNA synthetase; glycyl-tRNA synthetase 846072 glyS 2781423 glyS Candidatus Protochlamydia amoebophila UWE25 glycyl-tRNA synthetase YP_007692.1 843019 R 264201 CDS YP_007693.1 46446328 2780388 complement(846359..846586) 1 NC_005861.1 hypothetical protein 846586 2780388 pc0694 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007693.1 846359 R 264201 CDS YP_007694.1 46446329 2780389 846915..847907 1 NC_005861.1 hypothetical protein 847907 2780389 pc0695 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007694.1 846915 D 264201 CDS YP_007695.1 46446330 2780397 848118..848510 1 NC_005861.1 hypothetical protein 848510 2780397 pc0696 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007695.1 848118 D 264201 CDS YP_007696.1 46446331 2781145 848522..850354 1 NC_005861.1 similar to Excinuclease ABC subunit C; excinuclease ABC subunit C 850354 uvrC 2781145 uvrC Candidatus Protochlamydia amoebophila UWE25 excinuclease ABC subunit C YP_007696.1 848522 D 264201 CDS YP_007697.1 46446332 2780398 complement(850791..851324) 1 NC_005861.1 hypothetical protein 851324 2780398 pc0698 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007697.1 850791 R 264201 CDS YP_007698.1 46446333 2780399 complement(851359..852702) 1 NC_005861.1 hypothetical protein 852702 2780399 pc0699 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007698.1 851359 R 264201 CDS YP_007699.1 46446334 2780180 complement(852774..853184) 1 NC_005861.1 hypothetical protein 853184 2780180 pc0700 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007699.1 852774 R 264201 CDS YP_007700.1 46446335 2779713 853772..855433 1 NC_005861.1 similar to threonine-tRNA ligase; threonine-tRNA ligase 855433 thrS 2779713 thrS Candidatus Protochlamydia amoebophila UWE25 threonine-tRNA ligase YP_007700.1 853772 D 264201 CDS YP_007701.1 46446336 2780544 855435..855989 1 NC_005861.1 strongly similar to translation initiation factor IF-3; translation initiation factor IF-3 855989 infC 2780544 infC Candidatus Protochlamydia amoebophila UWE25 translation initiation factor IF-3 YP_007701.1 855435 D 264201 CDS YP_007702.1 46446337 2781450 856040..856234 1 NC_005861.1 strongly similar to 50S ribosomal protein L35; 50S ribosomal protein L35 856234 rpmI 2781450 rpmI Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L35 YP_007702.1 856040 D 264201 CDS YP_007703.1 46446338 2780929 856404..856760 1 NC_005861.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 856760 rplT 2780929 rplT Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L20 YP_007703.1 856404 D 264201 CDS YP_007704.1 46446339 2779548 856903..857943 1 NC_005861.1 strongly similar to phenylalanine-tRNA ligase alpha chain; phenylalanine-tRNA ligase subunit alpha 857943 pheS 2779548 pheS Candidatus Protochlamydia amoebophila UWE25 phenylalanine-tRNA ligase subunit alpha YP_007704.1 856903 D 264201 CDS YP_007705.1 46446340 2781325 857963..858859 1 NC_005861.1 hypothetical protein 858859 2781325 pc0706 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007705.1 857963 D 264201 CDS YP_007706.1 46446341 2780788 858856..859944 1 NC_005861.1 similar to heptosyltransferase I; heptosyltransferase I 859944 waaC 2780788 waaC Candidatus Protochlamydia amoebophila UWE25 heptosyltransferase I YP_007706.1 858856 D 264201 CDS YP_007707.1 46446342 2781326 complement(860165..860641) 1 NC_005861.1 hypothetical protein 860641 2781326 pc0708 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007707.1 860165 R 264201 CDS YP_007708.1 46446343 2779872 complement(860930..861859) 1 NC_005861.1 hypothetical protein 861859 2779872 pc0709 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007708.1 860930 R 264201 CDS YP_007709.1 46446344 2779873 complement(862606..863745) 1 NC_005861.1 hypothetical protein 863745 2779873 pc0710 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007709.1 862606 R 264201 CDS YP_007710.1 46446345 2780627 complement(864174..865412) 1 NC_005861.1 hypothetical protein 865412 2780627 pc0711 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007710.1 864174 R 264201 CDS YP_007711.1 46446346 2780628 complement(865436..865654) 1 NC_005861.1 hypothetical protein 865654 2780628 pc0712 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007711.1 865436 R 264201 CDS YP_007712.1 46446347 2780749 complement(866318..867661) 1 NC_005861.1 hypothetical protein 867661 2780749 pc0713 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007712.1 866318 R 264201 CDS YP_007713.1 46446348 2780332 complement(867837..869174) 1 NC_005861.1 hypothetical protein 869174 2780332 pc0714 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007713.1 867837 R 264201 CDS YP_007714.1 46446349 2779428 complement(869993..870325) 1 NC_005861.1 strongly similar to sugE protein; sugE protein 870325 sugE 2779428 sugE Candidatus Protochlamydia amoebophila UWE25 sugE protein YP_007714.1 869993 R 264201 CDS YP_007715.1 46446350 2780333 complement(870666..871103) 1 NC_005861.1 hypothetical protein 871103 2780333 pc0716 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007715.1 870666 R 264201 CDS YP_007716.1 46446351 2780334 871260..871913 1 NC_005861.1 hypothetical protein 871913 2780334 pc0717 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007716.1 871260 D 264201 CDS YP_007717.1 46446352 2779934 873090..873965 1 NC_005861.1 hypothetical protein 873965 2779934 pc0718 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007717.1 873090 D 264201 CDS YP_007718.1 46446353 2780001 873977..875209 1 NC_005861.1 similar to serine protease; serine protease 875209 2780001 pc0719 Candidatus Protochlamydia amoebophila UWE25 serine protease YP_007718.1 873977 D 264201 CDS YP_007719.1 46446354 2780002 875458..876237 1 NC_005861.1 similar to serine/threonine phosphoprotein phosphatase; serine/threonine phosphoprotein phosphatase 876237 2780002 pc0720 Candidatus Protochlamydia amoebophila UWE25 serine/threonine phosphoprotein phosphatase YP_007719.1 875458 D 264201 CDS YP_007720.1 46446355 2780457 876188..877357 1 NC_005861.1 similar to cysteine sulfinate desulfinase; cysteine sulfinate desulfinase 877357 nifS 2780457 nifS Candidatus Protochlamydia amoebophila UWE25 cysteine sulfinate desulfinase YP_007720.1 876188 D 264201 CDS YP_007721.1 46446356 2780400 complement(877384..877707) 1 NC_005861.1 hypothetical protein 877707 2780400 pc0722 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007721.1 877384 R 264201 CDS YP_007722.1 46446357 2780401 complement(877783..878289) 1 NC_005861.1 hypothetical protein 878289 2780401 pc0723 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007722.1 877783 R 264201 CDS YP_007723.1 46446358 2780402 879059..879313 1 NC_005861.1 hypothetical protein 879313 2780402 pc0724 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007723.1 879059 D 264201 CDS YP_007724.1 46446359 2779723 879588..880985 1 NC_005861.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 880985 udhA 2779723 udhA Candidatus Protochlamydia amoebophila UWE25 soluble pyridine nucleotide transhydrogenase YP_007724.1 879588 D 264201 CDS YP_007725.1 46446360 2779433 881150..881644 1 NC_005861.1 hypothetical protein 881644 2779433 pc0726 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007725.1 881150 D 264201 CDS YP_007726.1 46446361 2780491 881955..883163 1 NC_005861.1 hypothetical protein 883163 2780491 pc0727 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007726.1 881955 D 264201 CDS YP_007727.1 46446362 2780281 complement(883222..885828) 1 NC_005861.1 strongly similar to endopeptidase Clp ATP-binding chain; endopeptidase Clp ATP-binding chain 885828 clpB 2780281 clpB Candidatus Protochlamydia amoebophila UWE25 endopeptidase Clp ATP-binding chain YP_007727.1 883222 R 264201 CDS YP_007728.1 46446363 2780492 complement(886649..889396) 1 NC_005861.1 hypothetical protein 889396 2780492 pc0729 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007728.1 886649 R 264201 CDS YP_007729.1 46446364 2780093 889520..889711 1 NC_005861.1 hypothetical protein 889711 2780093 pc0730 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007729.1 889520 D 264201 CDS YP_007730.1 46446365 2780094 890015..890257 1 NC_005861.1 hypothetical protein 890257 2780094 pc0731 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007730.1 890015 D 264201 CDS YP_007731.1 46446366 2780611 890559..890744 1 NC_005861.1 hypothetical protein 890744 2780611 pc0732 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007731.1 890559 D 264201 CDS YP_007732.1 46446367 2780612 complement(890973..893798) 1 NC_005861.1 hypothetical protein 893798 2780612 pc0733 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007732.1 890973 R 264201 CDS YP_007733.1 46446368 2779780 complement(894351..897197) 1 NC_005861.1 hypothetical protein 897197 2779780 pc0734 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007733.1 894351 R 264201 CDS YP_007734.1 46446369 2780908 897665..900892 1 NC_005861.1 hypothetical protein 900892 2780908 pc0735 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007734.1 897665 D 264201 CDS YP_007735.1 46446370 2780909 complement(901100..903697) 1 NC_005861.1 hypothetical protein 903697 2780909 pc0736 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007735.1 901100 R 264201 CDS YP_007736.1 46446371 2780910 904066..904944 1 NC_005861.1 hypothetical protein 904944 2780910 pc0737 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007736.1 904066 D 264201 CDS YP_007737.1 46446372 2781245 complement(905583..906056) 1 NC_005861.1 hypothetical protein 906056 2781245 pc0738 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007737.1 905583 R 264201 CDS YP_007738.1 46446373 2779864 complement(906109..911616) 1 NC_005861.1 similar to rhs core protein with extension; rhs core protein with extension 911616 rhs 2779864 rhs Candidatus Protochlamydia amoebophila UWE25 rhs core protein with extension YP_007738.1 906109 R 264201 CDS YP_007739.1 46446374 2780947 911982..913946 1 NC_005861.1 strongly similar to gcpE protein; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 913946 gcpE 2780947 gcpE Candidatus Protochlamydia amoebophila UWE25 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_007739.1 911982 D 264201 CDS YP_007740.1 46446375 2780163 complement(913962..914546) 1 NC_005861.1 hypothetical protein 914546 2780163 pc0741 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007740.1 913962 R 264201 CDS YP_007741.1 46446376 2780164 complement(914588..916123) 1 NC_005861.1 hypothetical protein 916123 2780164 pc0742 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007741.1 914588 R 264201 CDS YP_007742.1 46446377 2780773 917152..919449 1 NC_005861.1 hypothetical protein 919449 2780773 pc0743 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007742.1 917152 D 264201 CDS YP_007743.1 46446378 2780774 complement(920237..920452) 1 NC_005861.1 hypothetical protein 920452 2780774 pc0744 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007743.1 920237 R 264201 CDS YP_007744.1 46446379 2779479 complement(920708..922378) 1 NC_005861.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 922378 malQ 2779479 malQ Candidatus Protochlamydia amoebophila UWE25 4-alpha-glucanotransferase YP_007744.1 920708 R 264201 CDS YP_007745.1 46446380 2779418 complement(922288..922746) 1 NC_005861.1 strongly similar to type III secretion chaperone sycE; type III secretion chaperone sycE 922746 scc1 2779418 scc1 Candidatus Protochlamydia amoebophila UWE25 type III secretion chaperone sycE YP_007745.1 922288 R 264201 CDS YP_007746.1 46446381 2780775 complement(922760..923110) 1 NC_005861.1 hypothetical protein 923110 2780775 pc0747 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007746.1 922760 R 264201 CDS YP_007747.1 46446382 2781151 complement(923262..924347) 1 NC_005861.1 hypothetical protein 924347 2781151 pc0748 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007747.1 923262 R 264201 CDS YP_007748.1 46446383 2779740 complement(924380..926560) 1 NC_005861.1 strongly similar to type III secretion pathway protein SctV; type III secretion pathway protein SctV 926560 sctV 2779740 sctV Candidatus Protochlamydia amoebophila UWE25 type III secretion pathway protein SctV YP_007748.1 924380 R 264201 CDS YP_007749.1 46446384 2780668 complement(926592..927665) 1 NC_005861.1 similar to type III secretion pathway protein sctU; type III secretion system protein 927665 sctU 2780668 sctU Candidatus Protochlamydia amoebophila UWE25 type III secretion system protein YP_007749.1 926592 R 264201 CDS YP_007750.1 46446385 2781191 929017..930831 1 NC_005861.1 hypothetical protein 930831 2781191 pc0751 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007750.1 929017 D 264201 CDS YP_007751.1 46446386 2781192 930869..931966 1 NC_005861.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 931966 2781192 pc0752 Candidatus Protochlamydia amoebophila UWE25 GTP-dependent nucleic acid-binding protein EngD YP_007751.1 930869 D 264201 CDS YP_007752.1 46446387 2780052 931994..933136 1 NC_005861.1 hypothetical protein 933136 2780052 pc0753 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007752.1 931994 D 264201 CDS YP_007753.1 46446388 2780053 933232..934737 1 NC_005861.1 hypothetical protein 934737 2780053 pc0754 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007753.1 933232 D 264201 CDS YP_007754.1 46446389 2780236 complement(934935..935144) 1 NC_005861.1 hypothetical protein 935144 2780236 pc0755 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007754.1 934935 R 264201 CDS YP_007755.1 46446390 2780237 complement(935123..935308) 1 NC_005861.1 hypothetical protein 935308 2780237 pc0756 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007755.1 935123 R 264201 CDS YP_007756.1 46446391 2780782 complement(935523..935750) 1 NC_005861.1 hypothetical protein 935750 2780782 pc0757 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007756.1 935523 R 264201 CDS YP_007757.1 46446392 2780951 complement(935872..936813) 1 NC_005861.1 similar to riboflavin kinase/FMN adenylyltransferase; riboflavin kinase/FMN adenylyltransferase 936813 ribF 2780951 ribF Candidatus Protochlamydia amoebophila UWE25 riboflavin kinase/FMN adenylyltransferase YP_007757.1 935872 R 264201 CDS YP_007758.1 46446393 2780743 complement(936827..937615) 1 NC_005861.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 937615 truB 2780743 truB Candidatus Protochlamydia amoebophila UWE25 tRNA pseudouridine synthase B YP_007758.1 936827 R 264201 CDS YP_007759.1 46446394 2779677 complement(937515..937910) 1 NC_005861.1 similar to ribosome binding factor A; ribosome binding factor A 937910 rbfA 2779677 rbfA Candidatus Protochlamydia amoebophila UWE25 ribosome binding factor A YP_007759.1 937515 R 264201 CDS YP_007760.1 46446395 2781082 complement(937916..940678) 1 NC_005861.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 940678 infB 2781082 infB Candidatus Protochlamydia amoebophila UWE25 translation initiation factor IF-2 YP_007760.1 937916 R 264201 CDS YP_007761.1 46446396 2781354 complement(940683..941957) 1 NC_005861.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 941957 nusA 2781354 nusA Candidatus Protochlamydia amoebophila UWE25 transcription elongation factor NusA YP_007761.1 940683 R 264201 CDS YP_007762.1 46446397 2781083 complement(942116..942298) 1 NC_005861.1 hypothetical protein 942298 2781083 pc0763 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007762.1 942116 R 264201 CDS YP_007763.1 46446398 2780143 complement(942321..944084) 1 NC_005861.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 944084 rpsA 2780143 rpsA Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S1 YP_007763.1 942321 R 264201 CDS YP_007764.1 46446399 2780646 944785..945585 1 NC_005861.1 strongly similar to aspartate kinase II precursor; aspartate kinase 945585 lysC 2780646 lysC Candidatus Protochlamydia amoebophila UWE25 aspartate kinase YP_007764.1 944785 D 264201 CDS YP_007765.1 46446400 2781084 945656..947563 1 NC_005861.1 hypothetical protein 947563 2781084 pc0766 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007765.1 945656 D 264201 CDS YP_007766.1 46446401 2781336 complement(948889..950070) 1 NC_005861.1 similar to branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 950070 braB 2781336 braB Candidatus Protochlamydia amoebophila UWE25 branched-chain amino acid transport system II carrier protein YP_007766.1 948889 R 264201 CDS YP_007767.1 46446402 2780518 950578..951309 1 NC_005861.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 951309 rpe 2780518 rpe Candidatus Protochlamydia amoebophila UWE25 ribulose-phosphate 3-epimerase YP_007767.1 950578 D 264201 CDS YP_007768.1 46446403 2779455 951347..951901 1 NC_005861.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 951901 efp 2779455 efp Candidatus Protochlamydia amoebophila UWE25 elongation factor P YP_007768.1 951347 D 264201 CDS YP_007769.1 46446404 2779776 951937..952278 1 NC_005861.1 hypothetical protein 952278 2779776 pc0770 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007769.1 951937 D 264201 CDS YP_007770.1 46446405 2779849 952292..952804 1 NC_005861.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 952804 accB 2779849 accB Candidatus Protochlamydia amoebophila UWE25 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_007770.1 952292 D 264201 CDS YP_007771.1 46446406 2779850 952814..954175 1 NC_005861.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 954175 accC 2779850 accC Candidatus Protochlamydia amoebophila UWE25 acetyl-CoA carboxylase biotin carboxylase subunit YP_007771.1 952814 D 264201 CDS YP_007772.1 46446407 2781436 954522..955232 1 NC_005861.1 hypothetical protein 955232 2781436 pc0773 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007772.1 954522 D 264201 CDS YP_007773.1 46446408 2781437 955262..955939 1 NC_005861.1 hypothetical protein 955939 2781437 pc0774 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007773.1 955262 D 264201 CDS YP_007774.1 46446409 2779594 complement(955999..956691) 1 NC_005861.1 hypothetical protein 956691 2779594 pc0775 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007774.1 955999 R 264201 CDS YP_007775.1 46446410 2779595 complement(956944..957900) 1 NC_005861.1 hypothetical protein 957900 2779595 pc0776 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007775.1 956944 R 264201 CDS YP_007776.1 46446411 2779596 958424..958834 1 NC_005861.1 hypothetical protein 958834 2779596 pc0777 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007776.1 958424 D 264201 CDS YP_007777.1 46446412 2780632 958852..959478 1 NC_005861.1 similar to exopolysaccharide synthesis protein; exopolysaccharide synthesis protein 959478 exoD 2780632 exoD Candidatus Protochlamydia amoebophila UWE25 exopolysaccharide synthesis protein YP_007777.1 958852 D 264201 CDS YP_007778.1 46446413 2781019 959785..961752 1 NC_005861.1 hypothetical protein 961752 2781019 pc0779 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007778.1 959785 D 264201 CDS YP_007779.1 46446414 2779852 complement(961910..962797) 1 NC_005861.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; methionine aminopeptidase 962797 map1 2779852 map1 Candidatus Protochlamydia amoebophila UWE25 methionine aminopeptidase YP_007779.1 961910 R 264201 CDS YP_007780.1 46446415 2779784 963049..964662 1 NC_005861.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 964662 pgi 2779784 pgi Candidatus Protochlamydia amoebophila UWE25 glucose-6-phosphate isomerase YP_007780.1 963049 D 264201 CDS YP_007781.1 46446416 2781291 964840..965292 1 NC_005861.1 hypothetical protein 965292 2781291 pc0782 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007781.1 964840 D 264201 CDS YP_007782.1 46446417 2779632 965289..966164 1 NC_005861.1 strongly similar to XerD protein; XerD protein 966164 xerD 2779632 xerD Candidatus Protochlamydia amoebophila UWE25 XerD protein YP_007782.1 965289 D 264201 CDS YP_007783.1 46446418 2781292 complement(966183..966614) 1 NC_005861.1 hypothetical protein 966614 2781292 pc0784 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007783.1 966183 R 264201 CDS YP_007784.1 46446419 2780913 complement(966701..966919) 1 NC_005861.1 hypothetical protein 966919 2780913 pc0785 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007784.1 966701 R 264201 CDS YP_007785.1 46446420 2780914 complement(966897..967214) 1 NC_005861.1 hypothetical protein 967214 2780914 pc0786 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007785.1 966897 R 264201 CDS YP_007786.1 46446421 2780586 967681..968181 1 NC_005861.1 similar to regulatory protein, involved in type III secretion lcrH, sycD; regulatory protein, involved in type III secretion lcrH, sycD 968181 lcrH 2780586 lcrH Candidatus Protochlamydia amoebophila UWE25 regulatory protein, involved in type III secretion lcrH, sycD YP_007786.1 967681 D 264201 CDS YP_007787.1 46446422 2781282 968600..968866 1 NC_005861.1 hypothetical protein 968866 2781282 pc0788 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007787.1 968600 D 264201 CDS YP_007788.1 46446423 2780453 968952..970079 1 NC_005861.1 similar to alcohol dehydrogenase class III; alcohol dehydrogenase class III 970079 adh3 2780453 adh3 Candidatus Protochlamydia amoebophila UWE25 alcohol dehydrogenase class III YP_007788.1 968952 D 264201 CDS YP_007789.1 46446424 2781283 complement(970131..970868) 1 NC_005861.1 hypothetical protein 970868 2781283 pc0790 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007789.1 970131 R 264201 CDS YP_007790.1 46446425 2779759 complement(970920..972371) 1 NC_005861.1 hypothetical protein 972371 2779759 pc0791 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007790.1 970920 R 264201 CDS YP_007791.1 46446426 2781408 complement(972368..973666) 1 NC_005861.1 hypothetical protein 973666 2781408 pc0792 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007791.1 972368 R 264201 CDS YP_007792.1 46446427 2780220 complement(973697..974098) 1 NC_005861.1 similar to mechanosensitive channel of large conductance; mechanosensitive channel of large conductance 974098 mscL 2780220 mscL Candidatus Protochlamydia amoebophila UWE25 mechanosensitive channel of large conductance YP_007792.1 973697 R 264201 CDS YP_007793.1 46446428 2781409 complement(974519..975682) 1 NC_005861.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4, 5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7- deazaguanosine); queuine tRNA-ribosyltransferase 975682 2781409 pc0794 Candidatus Protochlamydia amoebophila UWE25 queuine tRNA-ribosyltransferase YP_007793.1 974519 R 264201 CDS YP_007794.1 46446429 2781410 complement(975646..976299) 1 NC_005861.1 hypothetical protein 976299 2781410 pc0795 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007794.1 975646 R 264201 CDS YP_007795.1 46446430 2779919 976558..977256 1 NC_005861.1 similar to tonoplast intrinsic protein (Aquaporin); tonoplast intrinsic protein (Aquaporin) 977256 2779919 pc0796 Candidatus Protochlamydia amoebophila UWE25 tonoplast intrinsic protein (Aquaporin) YP_007795.1 976558 D 264201 CDS YP_007796.1 46446431 2780664 977463..978092 1 NC_005861.1 hypothetical protein 978092 2780664 pc0797 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007796.1 977463 D 264201 CDS YP_007797.1 46446432 2780665 978268..978489 1 NC_005861.1 hypothetical protein 978489 2780665 pc0798 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007797.1 978268 D 264201 CDS YP_007798.1 46446433 2780804 979088..979330 1 NC_005861.1 hypothetical protein 979330 2780804 pc0799 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007798.1 979088 D 264201 CDS YP_007799.1 46446434 2780805 complement(979526..980467) 1 NC_005861.1 hypothetical protein 980467 2780805 pc0800 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007799.1 979526 R 264201 CDS YP_007800.1 46446435 2780469 980629..981423 1 NC_005861.1 strongly similar to triose-phosphate isomerase; triose-phosphate isomerase 981423 tpiA 2780469 tpiA Candidatus Protochlamydia amoebophila UWE25 triose-phosphate isomerase YP_007800.1 980629 D 264201 CDS YP_007801.1 46446436 2781198 981420..981713 1 NC_005861.1 similar to integral membrane component of the sec protein-translocation machinery, secG; preprotein translocase subunit SecG 981713 secG 2781198 secG Candidatus Protochlamydia amoebophila UWE25 preprotein translocase subunit SecG YP_007801.1 981420 D 264201 CDS YP_007802.1 46446437 2780317 complement(982222..982752) 1 NC_005861.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 982752 def 2780317 def Candidatus Protochlamydia amoebophila UWE25 peptide deformylase YP_007802.1 982222 R 264201 CDS YP_007803.1 46446438 2781238 983824..984012 1 NC_005861.1 hypothetical protein 984012 2781238 pc0804 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007803.1 983824 D 264201 CDS YP_007804.1 46446439 2781239 984576..986432 1 NC_005861.1 hypothetical protein 986432 2781239 pc0805 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007804.1 984576 D 264201 CDS YP_007805.1 46446440 2780294 986478..986885 1 NC_005861.1 hypothetical protein 986885 2780294 pc0806 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007805.1 986478 D 264201 CDS YP_007806.1 46446441 2780295 complement(987161..987430) 1 NC_005861.1 hypothetical protein 987430 2780295 pc0807 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007806.1 987161 R 264201 CDS YP_007807.1 46446442 2780683 complement(987525..987890) 1 NC_005861.1 hypothetical protein 987890 2780683 pc0808 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007807.1 987525 R 264201 CDS YP_007808.1 46446443 2780661 988555..990849 1 NC_005861.1 similar to copper-transporting ATPase; copper-transporting ATPase 990849 copB 2780661 copB Candidatus Protochlamydia amoebophila UWE25 copper-transporting ATPase YP_007808.1 988555 D 264201 CDS YP_007809.1 46446444 2781402 complement(991301..992329) 1 NC_005861.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 992329 tdh 2781402 tdh Candidatus Protochlamydia amoebophila UWE25 L-threonine 3-dehydrogenase YP_007809.1 991301 R 264201 CDS YP_007810.1 46446445 2780684 complement(992567..993757) 1 NC_005861.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 993757 2780684 pc0811 Candidatus Protochlamydia amoebophila UWE25 2-amino-3-ketobutyrate CoA ligase YP_007810.1 992567 R 264201 CDS YP_007811.1 46446446 2780231 complement(993803..994885) 1 NC_005861.1 hypothetical protein 994885 2780231 pc0812 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007811.1 993803 R 264201 CDS YP_007812.1 46446447 2780232 995142..995972 1 NC_005861.1 hypothetical protein 995972 2780232 pc0813 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007812.1 995142 D 264201 CDS YP_007813.1 46446448 2781429 996151..996846 1 NC_005861.1 hypothetical protein 996846 2781429 pc0814 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007813.1 996151 D 264201 CDS YP_007814.1 46446449 2780670 complement(996832..997518) 1 NC_005861.1 strongly similar to lipoprotein releasing system ATP-binding protein; lipoprotein releasing system ATP-binding protein 997518 lolD 2780670 lolD Candidatus Protochlamydia amoebophila UWE25 lipoprotein releasing system ATP-binding protein YP_007814.1 996832 R 264201 CDS YP_007815.1 46446450 2781430 complement(997519..999651) 1 NC_005861.1 hypothetical protein 999651 2781430 pc0816 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007815.1 997519 R 264201 CDS YP_007816.1 46446451 2781055 complement(999677..999832) 1 NC_005861.1 strongly similar to 50S ribosomal protein L33; 50S ribosomal protein L33 999832 rpmG 2781055 rpmG Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L33 YP_007816.1 999677 R 264201 CDS YP_007817.1 46446452 2781206 complement(999951..1000982) 1 NC_005861.1 strongly similar to O-sialoglycoprotein endopeptidase; O-sialoglycoprotein 1000982 2781206 pc0818 Candidatus Protochlamydia amoebophila UWE25 O-sialoglycoprotein YP_007817.1 999951 R 264201 CDS YP_007818.1 46446453 2780319 complement(1001027..1001665) 1 NC_005861.1 similar to 6-phosphogluconolactonase (6PGL).; 6-phosphogluconolactonase (6PGL). 1001665 devB 2780319 devB Candidatus Protochlamydia amoebophila UWE25 6-phosphogluconolactonase (6PGL). YP_007818.1 1001027 R 264201 CDS YP_007819.1 46446454 2781207 complement(1001811..1002887) 1 NC_005861.1 hypothetical protein 1002887 2781207 pc0820 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007819.1 1001811 R 264201 CDS YP_007820.1 46446455 2781359 complement(1003120..1004670) 1 NC_005861.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1004670 zwf 2781359 zwf Candidatus Protochlamydia amoebophila UWE25 glucose-6-phosphate 1-dehydrogenase YP_007820.1 1003120 R 264201 CDS YP_007821.1 46446456 2781069 1005929..1008223 1 NC_005861.1 similar to bumetanide-sensitive Na-K-Cl cotransporter; bumetanide-sensitive Na-K-Cl 1008223 2781069 pc0822 Candidatus Protochlamydia amoebophila UWE25 bumetanide-sensitive Na-K-Cl YP_007821.1 1005929 D 264201 CDS YP_007822.1 46446457 2781070 complement(1008251..1008655) 1 NC_005861.1 hypothetical protein 1008655 2781070 pc0823 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007822.1 1008251 R 264201 CDS YP_007823.1 46446458 2780271 complement(1008693..1010327) 1 NC_005861.1 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1010327 pyrG 2780271 pyrG Candidatus Protochlamydia amoebophila UWE25 CTP synthetase YP_007823.1 1008693 R 264201 CDS YP_007824.1 46446459 2780433 complement(1010297..1011076) 1 NC_005861.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1011076 kdsB 2780433 kdsB Candidatus Protochlamydia amoebophila UWE25 3-deoxy-manno-octulosonate cytidylyltransferase YP_007824.1 1010297 R 264201 CDS YP_007825.1 46446460 2779902 1011302..1012252 1 NC_005861.1 hypothetical protein 1012252 2779902 pc0826 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007825.1 1011302 D 264201 CDS YP_007826.1 46446461 2779609 1012343..1013596 1 NC_005861.1 similar to 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO transferase); 3-deoxy-manno-octulosonate 1013596 gseA 2779609 gseA Candidatus Protochlamydia amoebophila UWE25 3-deoxy-manno-octulosonate YP_007826.1 1012343 D 264201 CDS YP_007827.1 46446462 2779903 1013800..1013988 1 NC_005861.1 hypothetical protein 1013988 2779903 pc0828 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007827.1 1013800 D 264201 CDS YP_007828.1 46446463 2781360 complement(1014121..1015431) 1 NC_005861.1 hypothetical protein 1015431 2781360 pc0829 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007828.1 1014121 R 264201 CDS YP_007829.1 46446464 2781361 1015945..1016640 1 NC_005861.1 hypothetical protein 1016640 2781361 pc0830 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007829.1 1015945 D 264201 CDS YP_007830.1 46446465 2781296 complement(1016676..1016876) 1 NC_005861.1 hypothetical protein 1016876 2781296 pc0831 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007830.1 1016676 R 264201 CDS YP_007831.1 46446466 2781297 complement(1016943..1017128) 1 NC_005861.1 hypothetical protein 1017128 2781297 pc0832 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007831.1 1016943 R 264201 CDS YP_007832.1 46446467 2781420 complement(1017139..1017504) 1 NC_005861.1 hypothetical protein 1017504 2781420 pc0833 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007832.1 1017139 R 264201 CDS YP_007833.1 46446468 2781421 1017926..1018177 1 NC_005861.1 hypothetical protein 1018177 2781421 pc0834 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007833.1 1017926 D 264201 CDS YP_007834.1 46446469 2779999 1018312..1019460 1 NC_005861.1 hypothetical protein 1019460 2779999 pc0835 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007834.1 1018312 D 264201 CDS YP_007835.1 46446470 2780000 1019516..1019782 1 NC_005861.1 hypothetical protein 1019782 2780000 pc0836 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007835.1 1019516 D 264201 CDS YP_007836.1 46446471 2781020 1019945..1020367 1 NC_005861.1 hypothetical protein 1020367 2781020 pc0837 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007836.1 1019945 D 264201 CDS YP_007837.1 46446472 2781021 1020923..1022161 1 NC_005861.1 hypothetical protein 1022161 2781021 pc0838 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007837.1 1020923 D 264201 CDS YP_007838.1 46446473 2779674 1022505..1023524 1 NC_005861.1 hypothetical protein 1023524 2779674 pc0839 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007838.1 1022505 D 264201 CDS YP_007839.1 46446474 2779675 1024058..1024816 1 NC_005861.1 hypothetical protein 1024816 2779675 pc0840 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007839.1 1024058 D 264201 CDS YP_007840.1 46446475 2779525 1025051..1025329 1 NC_005861.1 hypothetical protein 1025329 2779525 pc0841 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007840.1 1025051 D 264201 CDS YP_007841.1 46446476 2779526 1025830..1026273 1 NC_005861.1 hypothetical protein 1026273 2779526 pc0842 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007841.1 1025830 D 264201 CDS YP_007842.1 46446477 2779527 1027059..1028222 1 NC_005861.1 hypothetical protein 1028222 2779527 pc0843 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007842.1 1027059 D 264201 CDS YP_007843.1 46446478 2781304 1028259..1028549 1 NC_005861.1 hypothetical protein 1028549 2781304 pc0844 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007843.1 1028259 D 264201 CDS YP_007844.1 46446479 2781305 1029490..1029855 1 NC_005861.1 hypothetical protein 1029855 2781305 pc0845 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007844.1 1029490 D 264201 CDS YP_007845.1 46446480 2779807 1030508..1031125 1 NC_005861.1 hypothetical protein 1031125 2779807 pc0846 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007845.1 1030508 D 264201 CDS YP_007846.1 46446481 2779808 complement(1031367..1031585) 1 NC_005861.1 hypothetical protein 1031585 2779808 pc0847 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007846.1 1031367 R 264201 CDS YP_007847.1 46446482 2779971 complement(1031596..1032087) 1 NC_005861.1 hypothetical protein 1032087 2779971 pc0848 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007847.1 1031596 R 264201 CDS YP_007848.1 46446483 2779972 1032202..1032489 1 NC_005861.1 hypothetical protein 1032489 2779972 pc0849 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007848.1 1032202 D 264201 CDS YP_007849.1 46446484 2780554 complement(1032500..1033246) 1 NC_005861.1 hypothetical protein 1033246 2780554 pc0850 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007849.1 1032500 R 264201 CDS YP_007850.1 46446485 2780555 1033589..1034959 1 NC_005861.1 hypothetical protein 1034959 2780555 pc0851 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007850.1 1033589 D 264201 CDS YP_007851.1 46446486 2780139 1035458..1036141 1 NC_005861.1 hypothetical protein 1036141 2780139 pc0852 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007851.1 1035458 D 264201 CDS YP_007852.1 46446487 2780140 1036141..1036332 1 NC_005861.1 hypothetical protein 1036332 2780140 pc0853 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007852.1 1036141 D 264201 CDS YP_007853.1 46446488 2781298 complement(1036717..1036971) 1 NC_005861.1 hypothetical protein 1036971 2781298 pc0854 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007853.1 1036717 R 264201 CDS YP_007854.1 46446489 2781299 complement(1037210..1037641) 1 NC_005861.1 hypothetical protein 1037641 2781299 pc0855 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007854.1 1037210 R 264201 CDS YP_007855.1 46446490 2779821 1037781..1038413 1 NC_005861.1 strongly similar to L-isoaspartyl protein carboxyl methyltransferase; L-isoaspartyl protein carboxyl methyltransferase 1038413 pcm 2779821 pcm Candidatus Protochlamydia amoebophila UWE25 L-isoaspartyl protein carboxyl methyltransferase YP_007855.1 1037781 D 264201 CDS YP_007856.1 46446491 2781300 1038389..1038634 1 NC_005861.1 hypothetical protein 1038634 2781300 pc0857 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007856.1 1038389 D 264201 CDS YP_007857.1 46446492 2781028 1039402..1039812 1 NC_005861.1 hypothetical protein 1039812 2781028 pc0858 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007857.1 1039402 D 264201 CDS YP_007858.1 46446493 2781029 complement(1040126..1040458) 1 NC_005861.1 hypothetical protein 1040458 2781029 pc0859 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007858.1 1040126 R 264201 CDS YP_007859.1 46446494 2781438 1040634..1041374 1 NC_005861.1 hypothetical protein 1041374 2781438 pc0860 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007859.1 1040634 D 264201 CDS YP_007860.1 46446495 2781439 1041428..1042282 1 NC_005861.1 hypothetical protein 1042282 2781439 pc0861 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007860.1 1041428 D 264201 CDS YP_007861.1 46446496 2780987 1042290..1044116 1 NC_005861.1 hypothetical protein 1044116 2780987 pc0862 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007861.1 1042290 D 264201 CDS YP_007862.1 46446497 2780988 complement(1044121..1045134) 1 NC_005861.1 hypothetical protein 1045134 2780988 pc0863 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007862.1 1044121 R 264201 CDS YP_007863.1 46446498 2781128 1045342..1046127 1 NC_005861.1 similar to acid phosphatase; acid phosphatase 1046127 surE 2781128 surE Candidatus Protochlamydia amoebophila UWE25 acid phosphatase YP_007863.1 1045342 D 264201 CDS YP_007864.1 46446499 2781316 1046258..1049104 1 NC_005861.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1049104 acnB 2781316 acnB Candidatus Protochlamydia amoebophila UWE25 aconitate hydratase YP_007864.1 1046258 D 264201 CDS YP_007865.1 46446500 2780738 complement(1049131..1049316) 1 NC_005861.1 hypothetical protein 1049316 2780738 pc0866 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007865.1 1049131 R 264201 CDS YP_007866.1 46446501 2780739 complement(1049313..1050011) 1 NC_005861.1 hypothetical protein 1050011 2780739 pc0867 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007866.1 1049313 R 264201 CDS YP_007867.1 46446502 2780740 1050549..1050938 1 NC_005861.1 hypothetical protein 1050938 2780740 pc0868 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007867.1 1050549 D 264201 CDS YP_007868.1 46446503 2781212 1051410..1052369 1 NC_005861.1 hypothetical protein 1052369 2781212 pc0869 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007868.1 1051410 D 264201 CDS YP_007869.1 46446504 2781213 complement(1052384..1053274) 1 NC_005861.1 hypothetical protein 1053274 2781213 pc0870 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007869.1 1052384 R 264201 CDS YP_007870.1 46446505 2779812 1053647..1054768 1 NC_005861.1 strongly similar to spermidin/putrescin transport ATP-binding protein, component of ATP-transporter system; sperimidine/putrescine ABC transporter ATP-binding protein 1054768 potA 2779812 potA Candidatus Protochlamydia amoebophila UWE25 sperimidine/putrescine ABC transporter ATP-binding protein YP_007870.1 1053647 D 264201 CDS YP_007871.1 46446506 2780324 1054716..1055630 1 NC_005861.1 strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system; spermidine/putrescine ABC transporter permease 1055630 potB 2780324 potB Candidatus Protochlamydia amoebophila UWE25 spermidine/putrescine ABC transporter permease YP_007871.1 1054716 D 264201 CDS YP_007872.1 46446507 2780325 1055627..1056394 1 NC_005861.1 strongly similar to spermidine/putrescine transport system permease, component of ATP-transporter system; spermidine/putrescine ABC transporter permease 1056394 potC 2780325 potC Candidatus Protochlamydia amoebophila UWE25 spermidine/putrescine ABC transporter permease YP_007872.1 1055627 D 264201 CDS YP_007873.1 46446508 2780326 1056397..1057434 1 NC_005861.1 similar to spermidine/putrescine-binding protein precursor, component of ABC transporter system; spermidine/putrescine-binding protein , component of ABC transporter system 1057434 potD 2780326 potD Candidatus Protochlamydia amoebophila UWE25 spermidine/putrescine-binding protein , component of ABC transporter system YP_007873.1 1056397 D 264201 CDS YP_007874.1 46446509 2781005 complement(1057923..1058108) 1 NC_005861.1 hypothetical protein 1058108 2781005 pc0875 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007874.1 1057923 R 264201 CDS YP_007875.1 46446510 2781006 complement(1058333..1058533) 1 NC_005861.1 hypothetical protein 1058533 2781006 pc0876 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007875.1 1058333 R 264201 CDS YP_007876.1 46446511 2780599 1058669..1060033 1 NC_005861.1 similar to Mg2+ transporter; Mg2+ transporter 1060033 mgtE 2780599 mgtE Candidatus Protochlamydia amoebophila UWE25 Mg2+ transporter YP_007876.1 1058669 D 264201 CDS YP_007877.1 46446512 2779741 1060300..1061691 1 NC_005861.1 strongly similar to L-serine ammonia-lyase; L-serine ammonia-lyase 1061691 sdaB 2779741 sdaB Candidatus Protochlamydia amoebophila UWE25 L-serine ammonia-lyase YP_007877.1 1060300 D 264201 CDS YP_007878.1 46446513 2779990 1061787..1062578 1 NC_005861.1 hypothetical protein 1062578 2779990 pc0879 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007878.1 1061787 D 264201 CDS YP_007879.1 46446514 2779788 1062582..1064243 1 NC_005861.1 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 1064243 pfkA 2779788 pfkA Candidatus Protochlamydia amoebophila UWE25 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_007879.1 1062582 D 264201 CDS YP_007880.1 46446515 2779991 1064346..1064948 1 NC_005861.1 hypothetical protein 1064948 2779991 pc0881 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007880.1 1064346 D 264201 CDS YP_007881.1 46446516 2779798 1065071..1067890 1 NC_005861.1 similar to 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase); 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase) 1067890 aroA 2779798 aroA Candidatus Protochlamydia amoebophila UWE25 3-phosphoshikimate 1-carboxyvinyltransferase(5-enolpyruvylshikimate-3- phosphat e synthase, EPSP synthase) YP_007881.1 1065071 D 264201 CDS YP_007882.1 46446517 2779775 1067824..1068435 1 NC_005861.1 similar to shikimate kinase precursor; shikimate kinase 1068435 aroL 2779775 aroL Candidatus Protochlamydia amoebophila UWE25 shikimate kinase YP_007882.1 1067824 D 264201 CDS YP_007883.1 46446518 2779773 1068425..1069528 1 NC_005861.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1069528 aroC 2779773 aroC Candidatus Protochlamydia amoebophila UWE25 chorismate synthase YP_007883.1 1068425 D 264201 CDS YP_007884.1 46446519 2779992 1069844..1070581 1 NC_005861.1 hypothetical protein 1070581 2779992 pc0885 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007884.1 1069844 D 264201 CDS YP_007885.1 46446520 2780296 1070633..1071334 1 NC_005861.1 hypothetical protein 1071334 2780296 pc0886 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007885.1 1070633 D 264201 CDS YP_007886.1 46446521 2780297 1071450..1071836 1 NC_005861.1 hypothetical protein 1071836 2780297 pc0887 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007886.1 1071450 D 264201 CDS YP_007887.1 46446522 2779672 1072205..1074166 1 NC_005861.1 hypothetical protein 1074166 2779672 pc0888 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007887.1 1072205 D 264201 CDS YP_007888.1 46446523 2780952 complement(1074499..1075017) 1 NC_005861.1 strongly similar to riboflavin synthase beta chain; riboflavin synthase subunit beta 1075017 ribH 2780952 ribH Candidatus Protochlamydia amoebophila UWE25 riboflavin synthase subunit beta YP_007888.1 1074499 R 264201 CDS YP_007889.1 46446524 2780041 complement(1075048..1076286) 1 NC_005861.1 strongly similar to 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1076286 ribA 2780041 ribA Candidatus Protochlamydia amoebophila UWE25 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_007889.1 1075048 R 264201 CDS YP_007890.1 46446525 2780042 complement(1076294..1076899) 1 NC_005861.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1076899 ribC 2780042 ribC Candidatus Protochlamydia amoebophila UWE25 riboflavin synthase subunit alpha YP_007890.1 1076294 R 264201 CDS YP_007891.1 46446526 2779599 complement(1076920..1077750) 1 NC_005861.1 similar to formamidopyrimidine-DNA glycosidase; formamidopyrimidine-DNA glycosidase 1077750 mutM 2779599 mutM Candidatus Protochlamydia amoebophila UWE25 formamidopyrimidine-DNA glycosidase YP_007891.1 1076920 R 264201 CDS YP_007892.1 46446527 2779800 1078277..1078615 1 NC_005861.1 strongly similar to nucleic acid-binding protein; nucleic acid-binding protein 1078615 rbp 2779800 rbp Candidatus Protochlamydia amoebophila UWE25 nucleic acid-binding protein YP_007892.1 1078277 D 264201 CDS YP_007893.1 46446528 2779673 complement(1078839..1082885) 1 NC_005861.1 hypothetical protein 1082885 2779673 pc0894 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007893.1 1078839 R 264201 CDS YP_007894.1 46446529 2780954 complement(1083379..1084992) 1 NC_005861.1 similar to outer membrane protein; outer membrane protein 1084992 2780954 pc0895 Candidatus Protochlamydia amoebophila UWE25 outer membrane protein YP_007894.1 1083379 R 264201 CDS YP_007895.1 46446530 2780955 complement(1085168..1086589) 1 NC_005861.1 hypothetical protein 1086589 2780955 pc0896 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007895.1 1085168 R 264201 CDS YP_007896.1 46446531 2780956 1086598..1086780 1 NC_005861.1 hypothetical protein 1086780 2780956 pc0897 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007896.1 1086598 D 264201 CDS YP_007897.1 46446532 2779678 complement(1087367..1088536) 1 NC_005861.1 similar to RNase BN, tRNA processing enzyme; RNase BN, tRNA processing enzyme 1088536 rbn 2779678 rbn Candidatus Protochlamydia amoebophila UWE25 RNase BN, tRNA processing enzyme YP_007897.1 1087367 R 264201 CDS YP_007898.1 46446533 2780957 complement(1088807..1091212) 1 NC_005861.1 hypothetical protein 1091212 2780957 pc0899 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007898.1 1088807 R 264201 CDS YP_007899.1 46446534 2780958 1091483..1092088 1 NC_005861.1 hypothetical protein 1092088 2780958 pc0900 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007899.1 1091483 D 264201 CDS YP_007900.1 46446535 2781061 1092119..1093099 1 NC_005861.1 hypothetical protein 1093099 2781061 pc0901 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007900.1 1092119 D 264201 CDS YP_007901.1 46446536 2781062 complement(1093201..1093569) 1 NC_005861.1 hypothetical protein 1093569 2781062 pc0902 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007901.1 1093201 R 264201 CDS YP_007902.1 46446537 2780160 complement(1093491..1094006) 1 NC_005861.1 hypothetical protein 1094006 2780160 pc0903 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007902.1 1093491 R 264201 CDS YP_007903.1 46446538 2779862 1094443..1095381 1 NC_005861.1 strongly similar to rhamnosyltransferase; rhamnosyltransferase 1095381 rgpB 2779862 rgpB Candidatus Protochlamydia amoebophila UWE25 rhamnosyltransferase YP_007903.1 1094443 D 264201 CDS YP_007904.1 46446539 2780161 complement(1095457..1097106) 1 NC_005861.1 hypothetical protein 1097106 2780161 pc0905 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007904.1 1095457 R 264201 CDS YP_007905.1 46446540 2780162 1097384..1098700 1 NC_005861.1 hypothetical protein 1098700 2780162 pc0906 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007905.1 1097384 D 264201 CDS YP_007906.1 46446541 2780371 complement(1098715..1100529) 1 NC_005861.1 hypothetical protein 1100529 2780371 pc0907 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007906.1 1098715 R 264201 CDS YP_007907.1 46446542 2780372 complement(1101102..1101569) 1 NC_005861.1 hypothetical protein 1101569 2780372 pc0908 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007907.1 1101102 R 264201 CDS YP_007908.1 46446543 2780050 complement(1101584..1102312) 1 NC_005861.1 hypothetical protein 1102312 2780050 pc0909 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007908.1 1101584 R 264201 CDS YP_007909.1 46446544 2780051 1102710..1102901 1 NC_005861.1 hypothetical protein 1102901 2780051 pc0910 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007909.1 1102710 D 264201 CDS YP_007910.1 46446545 2780436 1103053..1105284 1 NC_005861.1 hypothetical protein 1105284 2780436 pc0911 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007910.1 1103053 D 264201 CDS YP_007911.1 46446546 2780437 complement(1105490..1106047) 1 NC_005861.1 hypothetical protein 1106047 2780437 pc0912 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007911.1 1105490 R 264201 CDS YP_007912.1 46446547 2780438 complement(1106016..1106609) 1 NC_005861.1 hypothetical protein 1106609 2780438 pc0913 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007912.1 1106016 R 264201 CDS YP_007913.1 46446548 2780874 complement(1106613..1107554) 1 NC_005861.1 similar to cation efflux system protein; cation efflux system protein 1107554 czcD 2780874 czcD Candidatus Protochlamydia amoebophila UWE25 cation efflux system protein YP_007913.1 1106613 R 264201 CDS YP_007914.1 46446549 2780435 complement(1107563..1109578) 1 NC_005861.1 similar to glutathione-regulated potassium-efflux system protein; glutathione-regulated potassium-efflux system protein 1109578 kefC 2780435 kefC Candidatus Protochlamydia amoebophila UWE25 glutathione-regulated potassium-efflux system protein YP_007914.1 1107563 R 264201 CDS YP_007915.1 46446550 2780588 complement(1109769..1111481) 1 NC_005861.1 similar to CPAF (chlamydia protease-like activity factor); protease-like activity factor) 1111481 2780588 pc0916 Candidatus Protochlamydia amoebophila UWE25 protease-like activity factor) YP_007915.1 1109769 R 264201 CDS YP_007916.1 46446551 2780589 complement(1111728..1111919) 1 NC_005861.1 hypothetical protein 1111919 2780589 pc0917 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007916.1 1111728 R 264201 CDS YP_007917.1 46446552 2780590 complement(1112066..1113019) 1 NC_005861.1 hypothetical protein 1113019 2780590 pc0918 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007917.1 1112066 R 264201 CDS YP_007918.1 46446553 2781364 complement(1113295..1114119) 1 NC_005861.1 hypothetical protein 1114119 2781364 pc0919 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007918.1 1113295 R 264201 CDS YP_007919.1 46446554 2779950 1114190..1114501 1 NC_005861.1 hypothetical protein 1114501 2779950 pc0920 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007919.1 1114190 D 264201 CDS YP_007920.1 46446555 2779951 1114636..1115076 1 NC_005861.1 hypothetical protein 1115076 2779951 pc0921 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007920.1 1114636 D 264201 CDS YP_007921.1 46446556 2779952 1115098..1116606 1 NC_005861.1 hypothetical protein 1116606 2779952 pc0922 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007921.1 1115098 D 264201 CDS YP_007922.1 46446557 2781397 1116610..1117467 1 NC_005861.1 hypothetical protein 1117467 2781397 pc0923 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007922.1 1116610 D 264201 CDS YP_007923.1 46446558 2781398 complement(1117542..1118012) 1 NC_005861.1 hypothetical protein 1118012 2781398 pc0924 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007923.1 1117542 R 264201 CDS YP_007924.1 46446559 2780003 complement(1118047..1118481) 1 NC_005861.1 hypothetical protein 1118481 2780003 pc0925 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007924.1 1118047 R 264201 CDS YP_007925.1 46446560 2780004 complement(1118484..1119158) 1 NC_005861.1 hypothetical protein 1119158 2780004 pc0926 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007925.1 1118484 R 264201 CDS YP_007926.1 46446561 2780005 complement(1119383..1120690) 1 NC_005861.1 similar to cationic amino acid transport protein; cationic amino acid transport protein 1120690 2780005 pc0927 Candidatus Protochlamydia amoebophila UWE25 cationic amino acid transport protein YP_007926.1 1119383 R 264201 CDS YP_007927.1 46446562 2780472 complement(1120701..1121504) 1 NC_005861.1 similar to anthranilate synthase component II; anthranilate synthase component II 1121504 trpD 2780472 trpD Candidatus Protochlamydia amoebophila UWE25 anthranilate synthase component II YP_007927.1 1120701 R 264201 CDS YP_007928.1 46446563 2779640 1121797..1122255 1 NC_005861.1 hypothetical protein 1122255 2779640 pc0929 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007928.1 1121797 D 264201 CDS YP_007929.1 46446564 2779524 complement(1122278..1122928) 1 NC_005861.1 similar to carbonic anhydrase; carbonic anhydrase 1122928 cynT 2779524 cynT Candidatus Protochlamydia amoebophila UWE25 carbonic anhydrase YP_007929.1 1122278 R 264201 CDS YP_007930.1 46446565 2779641 complement(1123011..1124024) 1 NC_005861.1 hypothetical protein 1124024 2779641 pc0931 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007930.1 1123011 R 264201 CDS YP_007931.1 46446566 2779838 complement(1124206..1124412) 1 NC_005861.1 hypothetical protein 1124412 2779838 pc0932 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007931.1 1124206 R 264201 CDS YP_007932.1 46446567 2780937 complement(1124555..1125610) 1 NC_005861.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 1125610 dhnA 2780937 dhnA Candidatus Protochlamydia amoebophila UWE25 fructose-bisphosphate aldolase YP_007932.1 1124555 R 264201 CDS YP_007933.1 46446568 2779839 complement(1125616..1126245) 1 NC_005861.1 hypothetical protein 1126245 2779839 pc0934 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007933.1 1125616 R 264201 CDS YP_007934.1 46446569 2781229 complement(1126238..1127221) 1 NC_005861.1 similar to glucokinase; glucokinase 1127221 glk 2781229 glk Candidatus Protochlamydia amoebophila UWE25 glucokinase YP_007934.1 1126238 R 264201 CDS YP_007935.1 46446570 2779840 complement(1127528..1127818) 1 NC_005861.1 hypothetical protein 1127818 2779840 pc0936 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007935.1 1127528 R 264201 CDS YP_007936.1 46446571 2780158 complement(1127815..1128186) 1 NC_005861.1 hypothetical protein 1128186 2780158 pc0937 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007936.1 1127815 R 264201 CDS YP_007937.1 46446572 2780159 complement(1128199..1137744) 1 NC_005861.1 hypothetical protein 1137744 2780159 pc0938 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007937.1 1128199 R 264201 CDS YP_007938.1 46446573 2781171 1138049..1138594 1 NC_005861.1 hypothetical protein 1138594 2781171 pc0939 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007938.1 1138049 D 264201 CDS YP_007939.1 46446574 2781172 complement(1138616..1138798) 1 NC_005861.1 hypothetical protein 1138798 2781172 pc0940 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007939.1 1138616 R 264201 CDS YP_007940.1 46446575 2780680 1138959..1139177 1 NC_005861.1 hypothetical protein 1139177 2780680 pc0941 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007940.1 1138959 D 264201 CDS YP_007941.1 46446576 2780681 complement(1139401..1140807) 1 NC_005861.1 hypothetical protein 1140807 2780681 pc0942 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007941.1 1139401 R 264201 CDS YP_007942.1 46446577 2781335 1140999..1141577 1 NC_005861.1 similar to outer membrane lipoprotein; outer membrane lipoprotein 1141577 blc 2781335 blc Candidatus Protochlamydia amoebophila UWE25 outer membrane lipoprotein YP_007942.1 1140999 D 264201 CDS YP_007943.1 46446578 2780682 complement(1141602..1142324) 1 NC_005861.1 hypothetical protein 1142324 2780682 pc0944 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007943.1 1141602 R 264201 CDS YP_007944.1 46446579 2780771 complement(1142358..1143143) 1 NC_005861.1 hypothetical protein 1143143 2780771 pc0945 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007944.1 1142358 R 264201 CDS YP_007945.1 46446580 2780772 complement(1143489..1144022) 1 NC_005861.1 hypothetical protein 1144022 2780772 pc0946 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007945.1 1143489 R 264201 CDS YP_007946.1 46446581 2781310 complement(1144309..1144743) 1 NC_005861.1 similar to thioredoxin; thioredoxin 1144743 trxA 2781310 trxA Candidatus Protochlamydia amoebophila UWE25 thioredoxin YP_007946.1 1144309 R 264201 CDS YP_007947.1 46446582 2780189 complement(1144892..1145539) 1 NC_005861.1 hypothetical protein 1145539 2780189 pc0948 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007947.1 1144892 R 264201 CDS YP_007948.1 46446583 2780190 complement(1145530..1147944) 1 NC_005861.1 hypothetical protein 1147944 2780190 pc0949 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007948.1 1145530 R 264201 CDS YP_007949.1 46446584 2780835 complement(1147931..1149523) 1 NC_005861.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 1149523 lig 2780835 lig Candidatus Protochlamydia amoebophila UWE25 ATP-dependent DNA ligase YP_007949.1 1147931 R 264201 CDS YP_007950.1 46446585 2780191 complement(1149520..1150524) 1 NC_005861.1 hypothetical protein 1150524 2780191 pc0951 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007950.1 1149520 R 264201 CDS YP_007951.1 46446586 2780619 complement(1150550..1151416) 1 NC_005861.1 strongly similar to oxidoreductases; oxidoreductase 1151416 2780619 pc0952 Candidatus Protochlamydia amoebophila UWE25 oxidoreductase YP_007951.1 1150550 R 264201 CDS YP_007952.1 46446587 2781038 complement(1151528..1152052) 1 NC_005861.1 strongly similar to yciF protein; hypothetical protein 1152052 yciF 2781038 yciF Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007952.1 1151528 R 264201 CDS YP_007953.1 46446588 2780620 complement(1152243..1152599) 1 NC_005861.1 hypothetical protein 1152599 2780620 pc0954 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007953.1 1152243 R 264201 CDS YP_007954.1 46446589 2779490 1153192..1153680 1 NC_005861.1 strongly similar to ferritin; ferritin 1153680 ftn 2779490 ftn Candidatus Protochlamydia amoebophila UWE25 ferritin YP_007954.1 1153192 D 264201 CDS YP_007955.1 46446590 2781032 1153758..1154375 1 NC_005861.1 hypothetical protein 1154375 2781032 pc0956 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007955.1 1153758 D 264201 CDS YP_007956.1 46446591 2781033 complement(1154509..1155510) 1 NC_005861.1 hypothetical protein 1155510 2781033 pc0957 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007956.1 1154509 R 264201 CDS YP_007957.1 46446592 2779737 complement(1155529..1156095) 1 NC_005861.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1156095 dcd 2779737 dcd Candidatus Protochlamydia amoebophila UWE25 deoxycytidine triphosphate deaminase YP_007957.1 1155529 R 264201 CDS YP_007958.1 46446593 2781034 1156232..1156507 1 NC_005861.1 hypothetical protein 1156507 2781034 pc0959 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007958.1 1156232 D 264201 CDS YP_007959.1 46446594 2779698 complement(1156504..1157508) 1 NC_005861.1 hypothetical protein 1157508 2779698 pc0960 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007959.1 1156504 R 264201 CDS YP_007960.1 46446595 2779699 1158123..1158317 1 NC_005861.1 hypothetical protein 1158317 2779699 pc0961 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007960.1 1158123 D 264201 CDS YP_007961.1 46446596 2781047 1158463..1158663 1 NC_005861.1 hypothetical protein 1158663 2781047 pc0962 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007961.1 1158463 D 264201 CDS YP_007962.1 46446597 2781048 complement(1158905..1159192) 1 NC_005861.1 hypothetical protein 1159192 2781048 pc0963 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007962.1 1158905 R 264201 CDS YP_007963.1 46446598 2781161 complement(1159552..1160406) 1 NC_005861.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1160406 msrA 2781161 msrA Candidatus Protochlamydia amoebophila UWE25 bifunctional methionine sulfoxide reductase B/A protein YP_007963.1 1159552 R 264201 CDS YP_007964.1 46446599 2781049 1160780..1161070 1 NC_005861.1 hypothetical protein 1161070 2781049 pc0965 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007964.1 1160780 D 264201 CDS YP_007965.1 46446600 2780228 complement(1161496..1161750) 1 NC_005861.1 hypothetical protein 1161750 2780228 pc0966 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007965.1 1161496 R 264201 CDS YP_007966.1 46446601 2780229 complement(1162594..1162959) 1 NC_005861.1 hypothetical protein 1162959 2780229 pc0967 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007966.1 1162594 R 264201 CDS YP_007967.1 46446602 2780230 complement(1162956..1163726) 1 NC_005861.1 hypothetical protein 1163726 2780230 pc0968 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007967.1 1162956 R 264201 CDS YP_007968.1 46446603 2781389 complement(1164315..1164512) 1 NC_005861.1 hypothetical protein 1164512 2781389 pc0969 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007968.1 1164315 R 264201 CDS YP_007969.1 46446604 2781390 complement(1164574..1169391) 1 NC_005861.1 hypothetical protein 1169391 2781390 pc0970 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007969.1 1164574 R 264201 CDS YP_007970.1 46446605 2780356 1170209..1170418 1 NC_005861.1 hypothetical protein 1170418 2780356 pc0971 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007970.1 1170209 D 264201 CDS YP_007971.1 46446606 2780357 complement(1170480..1170701) 1 NC_005861.1 hypothetical protein 1170701 2780357 pc0972 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007971.1 1170480 R 264201 CDS YP_007972.1 46446607 2780358 complement(1170728..1171324) 1 NC_005861.1 hypothetical protein 1171324 2780358 pc0973 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007972.1 1170728 R 264201 CDS YP_007973.1 46446608 2780712 complement(1171399..1173663) 1 NC_005861.1 hypothetical protein 1173663 2780712 pc0974 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007973.1 1171399 R 264201 CDS YP_007974.1 46446609 2781454 complement(1173751..1174932) 1 NC_005861.1 similar to SOS mutagenesis and repair protein UmuC; SOS mutagenesis and repair protein UmuC 1174932 umuC 2781454 umuC Candidatus Protochlamydia amoebophila UWE25 SOS mutagenesis and repair protein UmuC YP_007974.1 1173751 R 264201 CDS YP_007975.1 46446610 2781455 complement(1175042..1175473) 1 NC_005861.1 strongly similar to SOS mutagenesis and repair protein UmuD; SOS mutagenesis and repair protein UmuD 1175473 umuD 2781455 umuD Candidatus Protochlamydia amoebophila UWE25 SOS mutagenesis and repair protein UmuD YP_007975.1 1175042 R 264201 CDS YP_007976.1 46446611 2780713 complement(1175632..1176183) 1 NC_005861.1 hypothetical protein 1176183 2780713 pc0977 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007976.1 1175632 R 264201 CDS YP_007977.1 46446612 2780714 complement(1176289..1176732) 1 NC_005861.1 hypothetical protein 1176732 2780714 pc0978 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007977.1 1176289 R 264201 CDS YP_007978.1 46446613 2780639 complement(1177103..1177543) 1 NC_005861.1 hypothetical protein 1177543 2780639 pc0979 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007978.1 1177103 R 264201 CDS YP_007979.1 46446614 2780640 1177719..1178057 1 NC_005861.1 hypothetical protein 1178057 2780640 pc0980 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007979.1 1177719 D 264201 CDS YP_007980.1 46446615 2779400 complement(1178115..1179518) 1 NC_005861.1 hypothetical protein 1179518 2779400 pc0981 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007980.1 1178115 R 264201 CDS YP_007981.1 46446616 2779401 1180040..1180321 1 NC_005861.1 hypothetical protein 1180321 2779401 pc0982 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007981.1 1180040 D 264201 CDS YP_007982.1 46446617 2779402 1180462..1180704 1 NC_005861.1 hypothetical protein 1180704 2779402 pc0983 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007982.1 1180462 D 264201 CDS YP_007983.1 46446618 2780068 complement(1180889..1181266) 1 NC_005861.1 hypothetical protein 1181266 2780068 pc0984 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007983.1 1180889 R 264201 CDS YP_007984.1 46446619 2780069 1181470..1181733 1 NC_005861.1 hypothetical protein 1181733 2780069 pc0985 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007984.1 1181470 D 264201 CDS YP_007985.1 46446620 2780070 1181699..1181959 1 NC_005861.1 hypothetical protein 1181959 2780070 pc0986 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007985.1 1181699 D 264201 CDS YP_007986.1 46446621 2779684 1182166..1182501 1 NC_005861.1 hypothetical protein 1182501 2779684 pc0987 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007986.1 1182166 D 264201 CDS YP_007987.1 46446622 2779685 1182522..1182797 1 NC_005861.1 hypothetical protein 1182797 2779685 pc0988 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007987.1 1182522 D 264201 CDS YP_007988.1 46446623 2780556 1183287..1183535 1 NC_005861.1 hypothetical protein 1183535 2780556 pc0989 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007988.1 1183287 D 264201 CDS YP_007989.1 46446624 2780557 1183535..1183792 1 NC_005861.1 hypothetical protein 1183792 2780557 pc0990 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007989.1 1183535 D 264201 CDS YP_007990.1 46446625 2780558 1184113..1184298 1 NC_005861.1 hypothetical protein 1184298 2780558 pc0991 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007990.1 1184113 D 264201 CDS YP_007991.1 46446626 2779983 1184678..1186429 1 NC_005861.1 hypothetical protein 1186429 2779983 pc0992 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007991.1 1184678 D 264201 CDS YP_007992.1 46446627 2779984 1186926..1188362 1 NC_005861.1 hypothetical protein 1188362 2779984 pc0993 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007992.1 1186926 D 264201 CDS YP_007993.1 46446628 2779985 complement(1188880..1189185) 1 NC_005861.1 hypothetical protein 1189185 2779985 pc0994 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007993.1 1188880 R 264201 CDS YP_007994.1 46446629 2780982 complement(1189309..1189611) 1 NC_005861.1 hypothetical protein 1189611 2780982 pc0995 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007994.1 1189309 R 264201 CDS YP_007995.1 46446630 2780983 complement(1189601..1189942) 1 NC_005861.1 hypothetical protein 1189942 2780983 pc0996 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007995.1 1189601 R 264201 CDS YP_007996.1 46446631 2780291 complement(1190143..1190340) 1 NC_005861.1 hypothetical protein 1190340 2780291 pc0997 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007996.1 1190143 R 264201 CDS YP_007997.1 46446632 2780292 1190729..1190947 1 NC_005861.1 hypothetical protein 1190947 2780292 pc0998 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007997.1 1190729 D 264201 CDS YP_007998.1 46446633 2780293 complement(1191029..1191298) 1 NC_005861.1 hypothetical protein 1191298 2780293 pc0999 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007998.1 1191029 R 264201 CDS YP_007999.1 46446634 2780979 complement(1191462..1192274) 1 NC_005861.1 hypothetical protein 1192274 2780979 pc1000 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_007999.1 1191462 R 264201 CDS YP_008000.1 46446635 2780980 complement(1192289..1192666) 1 NC_005861.1 hypothetical protein 1192666 2780980 pc1001 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008000.1 1192289 R 264201 CDS YP_008001.1 46446636 2780981 1193254..1193970 1 NC_005861.1 hypothetical protein 1193970 2780981 pc1002 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008001.1 1193254 D 264201 CDS YP_008002.1 46446637 2780257 1194716..1195081 1 NC_005861.1 hypothetical protein 1195081 2780257 pc1003 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008002.1 1194716 D 264201 CDS YP_008003.1 46446638 2780258 1195109..1195372 1 NC_005861.1 hypothetical protein 1195372 2780258 pc1004 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008003.1 1195109 D 264201 CDS YP_008004.1 46446639 2780192 1195366..1196211 1 NC_005861.1 hypothetical protein 1196211 2780192 pc1005 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008004.1 1195366 D 264201 CDS YP_008005.1 46446640 2780193 complement(1196377..1199250) 1 NC_005861.1 hypothetical protein 1199250 2780193 pc1006 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008005.1 1196377 R 264201 CDS YP_008006.1 46446641 2780194 complement(1199428..1199691) 1 NC_005861.1 hypothetical protein 1199691 2780194 pc1007 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008006.1 1199428 R 264201 CDS YP_008007.1 46446642 2780409 complement(1200518..1200703) 1 NC_005861.1 hypothetical protein 1200703 2780409 pc1008 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008007.1 1200518 R 264201 CDS YP_008008.1 46446643 2780410 complement(1200784..1203594) 1 NC_005861.1 hypothetical protein 1203594 2780410 pc1009 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008008.1 1200784 R 264201 CDS YP_008009.1 46446644 2780411 complement(1204009..1205259) 1 NC_005861.1 hypothetical protein 1205259 2780411 pc1010 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008009.1 1204009 R 264201 CDS YP_008010.1 46446645 2779754 complement(1205240..1207180) 1 NC_005861.1 hypothetical protein 1207180 2779754 pc1011 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008010.1 1205240 R 264201 CDS YP_008011.1 46446646 2779755 complement(1207470..1207697) 1 NC_005861.1 hypothetical protein 1207697 2779755 pc1012 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008011.1 1207470 R 264201 CDS YP_008012.1 46446647 2779869 1207801..1208076 1 NC_005861.1 hypothetical protein 1208076 2779869 pc1013 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008012.1 1207801 D 264201 CDS YP_008013.1 46446648 2779870 1208060..1208398 1 NC_005861.1 hypothetical protein 1208398 2779870 pc1014 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008013.1 1208060 D 264201 CDS YP_008014.1 46446649 2779871 1208446..1208811 1 NC_005861.1 hypothetical protein 1208811 2779871 pc1015 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008014.1 1208446 D 264201 CDS YP_008015.1 46446650 2780201 1208815..1209030 1 NC_005861.1 hypothetical protein 1209030 2780201 pc1016 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008015.1 1208815 D 264201 CDS YP_008016.1 46446651 2780202 1209144..1209353 1 NC_005861.1 hypothetical protein 1209353 2780202 pc1017 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008016.1 1209144 D 264201 CDS YP_008017.1 46446652 2780203 1209346..1209702 1 NC_005861.1 hypothetical protein 1209702 2780203 pc1018 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008017.1 1209346 D 264201 CDS YP_008018.1 46446653 2780949 1209940..1210209 1 NC_005861.1 hypothetical protein 1210209 2780949 pc1019 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008018.1 1209940 D 264201 CDS YP_008019.1 46446654 2780950 1210328..1210609 1 NC_005861.1 hypothetical protein 1210609 2780950 pc1020 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008019.1 1210328 D 264201 CDS YP_008020.1 46446655 2781118 complement(1210578..1210955) 1 NC_005861.1 similar to death on curing protein; death on curing protein 1210955 doc 2781118 doc Candidatus Protochlamydia amoebophila UWE25 death on curing protein YP_008020.1 1210578 R 264201 CDS YP_008021.1 46446656 2780263 complement(1210952..1211182) 1 NC_005861.1 hypothetical protein 1211182 2780263 pc1022 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008021.1 1210952 R 264201 CDS YP_008022.1 46446657 2780264 complement(1211539..1211724) 1 NC_005861.1 hypothetical protein 1211724 2780264 pc1023 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008022.1 1211539 R 264201 CDS YP_008023.1 46446658 2780265 1211805..1211990 1 NC_005861.1 hypothetical protein 1211990 2780265 pc1024 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008023.1 1211805 D 264201 CDS YP_008024.1 46446659 2780047 1212370..1214457 1 NC_005861.1 hypothetical protein 1214457 2780047 pc1025 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008024.1 1212370 D 264201 CDS YP_008025.1 46446660 2780048 complement(1214535..1214783) 1 NC_005861.1 hypothetical protein 1214783 2780048 pc1026 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008025.1 1214535 R 264201 CDS YP_008026.1 46446661 2780049 1214905..1215108 1 NC_005861.1 hypothetical protein 1215108 2780049 pc1027 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008026.1 1214905 D 264201 CDS YP_008027.1 46446662 2780285 1215757..1216134 1 NC_005861.1 hypothetical protein 1216134 2780285 pc1028 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008027.1 1215757 D 264201 CDS YP_008028.1 46446663 2780286 1216149..1216961 1 NC_005861.1 hypothetical protein 1216961 2780286 pc1029 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008028.1 1216149 D 264201 CDS YP_008029.1 46446664 2781051 complement(1217058..1217267) 1 NC_005861.1 hypothetical protein 1217267 2781051 pc1030 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008029.1 1217058 R 264201 CDS YP_008030.1 46446665 2781052 complement(1217895..1219556) 1 NC_005861.1 hypothetical protein 1219556 2781052 pc1031 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008030.1 1217895 R 264201 CDS YP_008031.1 46446666 2781053 complement(1220127..1222331) 1 NC_005861.1 hypothetical protein 1222331 2781053 pc1032 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008031.1 1220127 R 264201 CDS YP_008032.1 46446667 2779444 complement(1222606..1224594) 1 NC_005861.1 hypothetical protein 1224594 2779444 pc1033 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008032.1 1222606 R 264201 CDS YP_008033.1 46446668 2779445 complement(1225106..1225537) 1 NC_005861.1 hypothetical protein 1225537 2779445 pc1034 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008033.1 1225106 R 264201 CDS YP_008034.1 46446669 2780107 complement(1225537..1226133) 1 NC_005861.1 similar to sporulation initiation inhibitor protein; sporulation initiation inhibitor protein 1226133 soj 2780107 soj Candidatus Protochlamydia amoebophila UWE25 sporulation initiation inhibitor protein YP_008034.1 1225537 R 264201 CDS YP_008035.1 46446670 2779446 1226446..1226646 1 NC_005861.1 hypothetical protein 1226646 2779446 pc1036 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008035.1 1226446 D 264201 CDS YP_008036.1 46446671 2780117 complement(1226703..1226987) 1 NC_005861.1 hypothetical protein 1226987 2780117 pc1037 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008036.1 1226703 R 264201 CDS YP_008037.1 46446672 2780118 complement(1233025..1235622) 1 NC_005861.1 hypothetical protein 1235622 2780118 pc1038 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008037.1 1233025 R 264201 CDS YP_008038.1 46446673 2779744 complement(1235690..1238296) 1 NC_005861.1 hypothetical protein 1238296 2779744 pc1039 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008038.1 1235690 R 264201 CDS YP_008039.1 46446674 2779745 1238914..1239144 1 NC_005861.1 hypothetical protein 1239144 2779745 pc1040 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008039.1 1238914 D 264201 CDS YP_008040.1 46446675 2780454 complement(1239407..1240102) 1 NC_005861.1 strongly similar to adenylate kinase (EC 2.7.4.3); adenylate kinase 1240102 adk 2780454 adk Candidatus Protochlamydia amoebophila UWE25 adenylate kinase YP_008040.1 1239407 R 264201 CDS YP_008041.1 46446676 2780043 1240454..1241560 1 NC_005861.1 strongly similar to diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1241560 ribD 2780043 ribD Candidatus Protochlamydia amoebophila UWE25 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_008041.1 1240454 D 264201 CDS YP_008042.1 46446677 2779746 complement(1241557..1242729) 1 NC_005861.1 hypothetical protein 1242729 2779746 pc1043 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008042.1 1241557 R 264201 CDS YP_008043.1 46446678 2779386 complement(1242751..1243191) 1 NC_005861.1 hypothetical protein 1243191 2779386 pc1044 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008043.1 1242751 R 264201 CDS YP_008044.1 46446679 2779387 complement(1243160..1243600) 1 NC_005861.1 hypothetical protein 1243600 2779387 pc1045 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008044.1 1243160 R 264201 CDS YP_008045.1 46446680 2779388 1243913..1244683 1 NC_005861.1 hypothetical protein 1244683 2779388 pc1046 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008045.1 1243913 D 264201 CDS YP_008046.1 46446681 2780786 complement(1244786..1247323) 1 NC_005861.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1247323 leuS 2780786 leuS Candidatus Protochlamydia amoebophila UWE25 leucyl-tRNA synthetase YP_008046.1 1244786 R 264201 CDS YP_008047.1 46446682 2781146 1247563..1249890 1 NC_005861.1 similar to ribonuclease R; ribonuclease R 1249890 vacB 2781146 vacB Candidatus Protochlamydia amoebophila UWE25 ribonuclease R YP_008047.1 1247563 D 264201 CDS YP_008048.1 46446683 2780115 1250012..1250719 1 NC_005861.1 hypothetical protein 1250719 2780115 pc1049 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008048.1 1250012 D 264201 CDS YP_008049.1 46446684 2780116 1250725..1251381 1 NC_005861.1 hypothetical protein 1251381 2780116 pc1050 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008049.1 1250725 D 264201 CDS YP_008050.1 46446685 2779962 1251338..1251790 1 NC_005861.1 hypothetical protein 1251790 2779962 pc1051 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008050.1 1251338 D 264201 CDS YP_008051.1 46446686 2779963 complement(1251800..1253305) 1 NC_005861.1 hypothetical protein 1253305 2779963 pc1052 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008051.1 1251800 R 264201 CDS YP_008052.1 46446687 2779964 1253754..1253912 1 NC_005861.1 hypothetical protein 1253912 2779964 pc1053 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008052.1 1253754 D 264201 CDS YP_008053.1 46446688 2779977 1254144..1254596 1 NC_005861.1 hypothetical protein 1254596 2779977 pc1054 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008053.1 1254144 D 264201 CDS YP_008054.1 46446689 2779978 1254970..1256343 1 NC_005861.1 hypothetical protein 1256343 2779978 pc1055 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008054.1 1254970 D 264201 CDS YP_008055.1 46446690 2779979 1256880..1258439 1 NC_005861.1 hypothetical protein 1258439 2779979 pc1056 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008055.1 1256880 D 264201 CDS YP_008056.1 46446691 2779688 1258575..1260572 1 NC_005861.1 hypothetical protein 1260572 2779688 pc1057 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008056.1 1258575 D 264201 CDS YP_008057.1 46446692 2781121 complement(1260664..1261449) 1 NC_005861.1 similar to carbonate dehydratase, cynT; carbonate dehydratase, cynT 1261449 cynT 2781121 cynT Candidatus Protochlamydia amoebophila UWE25 carbonate dehydratase, cynT YP_008057.1 1260664 R 264201 CDS YP_008058.1 46446693 2779689 1261811..1262080 1 NC_005861.1 hypothetical protein 1262080 2779689 pc1059 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008058.1 1261811 D 264201 CDS YP_008059.1 46446694 2779722 1262125..1262853 1 NC_005861.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1262853 ubiE 2779722 ubiE Candidatus Protochlamydia amoebophila UWE25 ubiquinone/menaquinone biosynthesis methyltransferase YP_008059.1 1262125 D 264201 CDS YP_008060.1 46446695 2781365 1262887..1263300 1 NC_005861.1 hypothetical protein 1263300 2781365 pc1061 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008060.1 1262887 D 264201 CDS YP_008061.1 46446696 2781148 complement(1263309..1264442) 1 NC_005861.1 similar to o-succinylbenzoate-CoA ligase, menE; o-succinylbenzoate-CoA ligase, menE 1264442 menE 2781148 menE Candidatus Protochlamydia amoebophila UWE25 o-succinylbenzoate-CoA ligase, menE YP_008061.1 1263309 R 264201 CDS YP_008062.1 46446697 2780904 complement(1264461..1265363) 1 NC_005861.1 similar to 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA 1265363 menA 2780904 menA Candidatus Protochlamydia amoebophila UWE25 1,4-dihydroxy-2-naphthoate octaprenyltransferase, menA YP_008062.1 1264461 R 264201 CDS YP_008063.1 46446698 2780905 complement(1265384..1266211) 1 NC_005861.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1266211 menB 2780905 menB Candidatus Protochlamydia amoebophila UWE25 naphthoate synthase YP_008063.1 1265384 R 264201 CDS YP_008064.1 46446699 2781366 1267648..1272165 1 NC_005861.1 hypothetical protein 1272165 2781366 pc1065 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008064.1 1267648 D 264201 CDS YP_008065.1 46446700 2781367 1272880..1273185 1 NC_005861.1 hypothetical protein 1273185 2781367 pc1066 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008065.1 1272880 D 264201 CDS YP_008066.1 46446701 2781003 complement(1273420..1274130) 1 NC_005861.1 hypothetical protein 1274130 2781003 pc1067 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008066.1 1273420 R 264201 CDS YP_008067.1 46446702 2780907 complement(1274130..1275692) 1 NC_005861.1 similar to menaquinone biosynthesis protein, menD; menaquinone biosynthesis protein, menD 1275692 menD 2780907 menD Candidatus Protochlamydia amoebophila UWE25 menaquinone biosynthesis protein, menD YP_008067.1 1274130 R 264201 CDS YP_008068.1 46446703 2781149 complement(1275689..1276744) 1 NC_005861.1 similar to menaquinone-specific isochorismate synthase, menF; menaquinone-specific isochorismate synthase, menF 1276744 menF 2781149 menF Candidatus Protochlamydia amoebophila UWE25 menaquinone-specific isochorismate synthase, menF YP_008068.1 1275689 R 264201 CDS YP_008069.1 46446704 2781004 complement(1276945..1278039) 1 NC_005861.1 hypothetical protein 1278039 2781004 pc1070 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008069.1 1276945 R 264201 CDS YP_008070.1 46446705 2780967 complement(1278131..1279558) 1 NC_005861.1 hypothetical protein 1279558 2780967 pc1071 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008070.1 1278131 R 264201 CDS YP_008071.1 46446706 2780650 complement(1280171..1281280) 1 NC_005861.1 similar to DNA polymerase III, delta' subunit, holB; DNA polymerase III, delta' subunit, holB 1281280 holB 2780650 holB Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III, delta' subunit, holB YP_008071.1 1280171 R 264201 CDS YP_008072.1 46446707 2780386 complement(1281277..1281954) 1 NC_005861.1 similar to thymidylate kinase, tmk; thymidylate kinase, tmk 1281954 tmk 2780386 tmk Candidatus Protochlamydia amoebophila UWE25 thymidylate kinase, tmk YP_008072.1 1281277 R 264201 CDS YP_008073.1 46446708 2780174 complement(1281957..1284527) 1 NC_005861.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1284527 gyrA 2780174 gyrA Candidatus Protochlamydia amoebophila UWE25 DNA gyrase subunit A YP_008073.1 1281957 R 264201 CDS YP_008074.1 46446709 2780806 complement(1284615..1287122) 1 NC_005861.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1287122 gyrB 2780806 gyrB Candidatus Protochlamydia amoebophila UWE25 DNA gyrase subunit B YP_008074.1 1284615 R 264201 CDS YP_008075.1 46446710 2780968 complement(1287158..1287496) 1 NC_005861.1 hypothetical protein 1287496 2780968 pc1076 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008075.1 1287158 R 264201 CDS YP_008076.1 46446711 2780969 complement(1287830..1288867) 1 NC_005861.1 hypothetical protein 1288867 2780969 pc1077 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008076.1 1287830 R 264201 CDS YP_008077.1 46446712 2780649 complement(1288939..1289880) 1 NC_005861.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1289880 ispH 2780649 ispH Candidatus Protochlamydia amoebophila UWE25 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_008077.1 1288939 R 264201 CDS YP_008078.1 46446713 2780126 complement(1289951..1290433) 1 NC_005861.1 similar to low molecular weight protein-tyrosine-phosphatase; low molecular weight protein-tyrosine-phosphatase 1290433 wzb 2780126 wzb Candidatus Protochlamydia amoebophila UWE25 low molecular weight protein-tyrosine-phosphatase YP_008078.1 1289951 R 264201 CDS YP_008079.1 46446714 2781063 complement(1290509..1292476) 1 NC_005861.1 hypothetical protein 1292476 2781063 pc1080 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008079.1 1290509 R 264201 CDS YP_008080.1 46446715 2779578 1292774..1295374 1 NC_005861.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1295374 yidC 2779578 yidC Candidatus Protochlamydia amoebophila UWE25 inner membrane protein translocase component YidC YP_008080.1 1292774 D 264201 CDS YP_008081.1 46446716 2780108 1295440..1296795 1 NC_005861.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1296795 dnaA 2780108 dnaA Candidatus Protochlamydia amoebophila UWE25 chromosome replication initiator DnaA YP_008081.1 1295440 D 264201 CDS YP_008082.1 46446717 2780834 1297070..1298194 1 NC_005861.1 similar to prolipoprotein diacylglycerol transferase; prolipoprotein diacylglycerol transferase 1298194 lgt 2780834 lgt Candidatus Protochlamydia amoebophila UWE25 prolipoprotein diacylglycerol transferase YP_008082.1 1297070 D 264201 CDS YP_008083.1 46446718 2780797 1298326..1298592 1 NC_005861.1 similar to ferredoxin [2Fe-2S] 4; ferredoxin [2Fe-2S] 4 1298592 fdiV 2780797 fdiV Candidatus Protochlamydia amoebophila UWE25 ferredoxin [2Fe-2S] 4 YP_008083.1 1298326 D 264201 CDS YP_008084.1 46446719 2781064 1298729..1299433 1 NC_005861.1 hypothetical protein 1299433 2781064 pc1085 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008084.1 1298729 D 264201 CDS YP_008085.1 46446720 2781065 1299939..1301036 1 NC_005861.1 hypothetical protein 1301036 2781065 pc1086 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008085.1 1299939 D 264201 CDS YP_008086.1 46446721 2781193 1301057..1302202 1 NC_005861.1 hypothetical protein 1302202 2781193 pc1087 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008086.1 1301057 D 264201 CDS YP_008087.1 46446722 2780074 complement(1302350..1303747) 1 NC_005861.1 strongly similar to dihydrolipoamide dehydrogenase precursor (E3 component of pyruvate dehydrogenase multi-enzyme complex); dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase multi-enzyme complex) 1303747 dld1 2780074 dld1 Candidatus Protochlamydia amoebophila UWE25 dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase multi-enzyme complex) YP_008087.1 1302350 R 264201 CDS YP_008088.1 46446723 2780241 complement(1303768..1304982) 1 NC_005861.1 strongly similar to dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB; dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB 1304982 sucB 2780241 sucB Candidatus Protochlamydia amoebophila UWE25 dihydrolipoamide S-succinyltransferase, (2-oxogluturate dehydrogenase complex E2 component), sucB YP_008088.1 1303768 R 264201 CDS YP_008089.1 46446724 2780240 complement(1304928..1307600) 1 NC_005861.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1307600 sucA 2780240 sucA Candidatus Protochlamydia amoebophila UWE25 2-oxoglutarate dehydrogenase E1 YP_008089.1 1304928 R 264201 CDS YP_008090.1 46446725 2781194 1307741..1308403 1 NC_005861.1 hypothetical protein 1308403 2781194 pc1091 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008090.1 1307741 D 264201 CDS YP_008091.1 46446726 2781195 1308400..1310775 1 NC_005861.1 hypothetical protein 1310775 2781195 pc1092 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008091.1 1308400 D 264201 CDS YP_008092.1 46446727 2781321 complement(1310772..1311503) 1 NC_005861.1 similar to carboxymethylenebutenolidase; carboxymethylenebutenolidase 1311503 ysgA 2781321 ysgA Candidatus Protochlamydia amoebophila UWE25 carboxymethylenebutenolidase YP_008092.1 1310772 R 264201 CDS YP_008093.1 46446728 2780843 1311764..1313668 1 NC_005861.1 hypothetical protein 1313668 2780843 pc1094 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008093.1 1311764 D 264201 CDS YP_008094.1 46446729 2780844 1313892..1314359 1 NC_005861.1 hypothetical protein 1314359 2780844 pc1095 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008094.1 1313892 D 264201 CDS YP_008095.1 46446730 2781345 1314343..1315500 1 NC_005861.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1315500 hemN 2781345 hemN Candidatus Protochlamydia amoebophila UWE25 coproporphyrinogen III oxidase YP_008095.1 1314343 D 264201 CDS YP_008096.1 46446731 2780845 1315713..1317803 1 NC_005861.1 hypothetical protein 1317803 2780845 pc1097 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008096.1 1315713 D 264201 CDS YP_008097.1 46446732 2780340 1317821..1318207 1 NC_005861.1 hypothetical protein 1318207 2780340 pc1098 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008097.1 1317821 D 264201 CDS YP_008098.1 46446733 2780341 complement(1318504..1319229) 1 NC_005861.1 hypothetical protein 1319229 2780341 pc1099 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008098.1 1318504 R 264201 CDS YP_008099.1 46446734 2780763 complement(1319229..1320260) 1 NC_005861.1 hypothetical protein 1320260 2780763 pc1100 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008099.1 1319229 R 264201 CDS YP_008100.1 46446735 2780764 complement(1320367..1320621) 1 NC_005861.1 hypothetical protein 1320621 2780764 pc1101 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008100.1 1320367 R 264201 CDS YP_008101.1 46446736 2779770 complement(1320902..1321969) 1 NC_005861.1 catalyzes the formation of aspartate semialdehyde from aspartyl phosphate; aspartate-semialdehyde dehydrogenase 1321969 asd 2779770 asd Candidatus Protochlamydia amoebophila UWE25 aspartate-semialdehyde dehydrogenase YP_008101.1 1320902 R 264201 CDS YP_008102.1 46446737 2780361 complement(1321975..1323474) 1 NC_005861.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1323474 pepA 2780361 pepA Candidatus Protochlamydia amoebophila UWE25 leucyl aminopeptidase YP_008102.1 1321975 R 264201 CDS YP_008103.1 46446738 2780133 complement(1323731..1324207) 1 NC_005861.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1324207 ssb 2780133 ssb Candidatus Protochlamydia amoebophila UWE25 single-stranded DNA-binding protein YP_008103.1 1323731 R 264201 CDS YP_008104.1 46446739 2780765 complement(1324524..1325027) 1 NC_005861.1 hypothetical protein 1325027 2780765 pc1105 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008104.1 1324524 R 264201 CDS YP_008105.1 46446740 2779603 1325660..1327672 1 NC_005861.1 strongly similar to isoamylase; isoamylase 1327672 2779603 pc1106 Candidatus Protochlamydia amoebophila UWE25 isoamylase YP_008105.1 1325660 D 264201 CDS YP_008106.1 46446741 2779604 complement(1327793..1328656) 1 NC_005861.1 hypothetical protein 1328656 2779604 pc1107 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008106.1 1327793 R 264201 CDS YP_008107.1 46446742 2779416 complement(1328687..1329685) 1 NC_005861.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1329685 ruvB 2779416 ruvB Candidatus Protochlamydia amoebophila UWE25 Holliday junction DNA helicase RuvB YP_008107.1 1328687 R 264201 CDS YP_008108.1 46446743 2779605 1330049..1330588 1 NC_005861.1 hypothetical protein 1330588 2779605 pc1109 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008108.1 1330049 D 264201 CDS YP_008109.1 46446744 2781278 1330638..1331024 1 NC_005861.1 similar to low calcium response protein lcrH; low calcium response protein lcrH 1331024 lcrH 2781278 lcrH Candidatus Protochlamydia amoebophila UWE25 low calcium response protein lcrH YP_008109.1 1330638 D 264201 CDS YP_008110.1 46446745 2781088 1331034..1331996 1 NC_005861.1 hypothetical protein 1331996 2781088 pc1111 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008110.1 1331034 D 264201 CDS YP_008111.1 46446746 2781089 1332028..1332606 1 NC_005861.1 hypothetical protein 1332606 2781089 pc1112 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008111.1 1332028 D 264201 CDS YP_008112.1 46446747 2781090 complement(1332648..1333280) 1 NC_005861.1 hypothetical protein 1333280 2781090 pc1113 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008112.1 1332648 R 264201 CDS YP_008113.1 46446748 2779634 1333489..1334451 1 NC_005861.1 hypothetical protein 1334451 2779634 pc1114 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008113.1 1333489 D 264201 CDS YP_008114.1 46446749 2781013 complement(1334543..1336015) 1 NC_005861.1 similar to Mg2+ transporter; Mg2+ transporter 1336015 mgtE 2781013 mgtE Candidatus Protochlamydia amoebophila UWE25 Mg2+ transporter YP_008114.1 1334543 R 264201 CDS YP_008115.1 46446750 2780447 1336275..1338095 1 NC_005861.1 similar to Elongation factor G (EF-G), fusA; elongation factor G (EF-G), fusA 1338095 fusA 2780447 fusA Candidatus Protochlamydia amoebophila UWE25 elongation factor G (EF-G), fusA YP_008115.1 1336275 D 264201 CDS YP_008116.1 46446751 2779635 complement(1338417..1340465) 1 NC_005861.1 hypothetical protein 1340465 2779635 pc1117 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008116.1 1338417 R 264201 CDS YP_008117.1 46446752 2779636 complement(1340628..1342784) 1 NC_005861.1 hypothetical protein 1342784 2779636 pc1118 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008117.1 1340628 R 264201 CDS YP_008118.1 46446753 2781095 complement(1343063..1344028) 1 NC_005861.1 hypothetical protein 1344028 2781095 pc1119 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008118.1 1343063 R 264201 CDS YP_008119.1 46446754 2781096 1344242..1345501 1 NC_005861.1 hypothetical protein 1345501 2781096 pc1120 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008119.1 1344242 D 264201 CDS YP_008120.1 46446755 2781039 1345515..1346522 1 NC_005861.1 similar to 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase); 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) 1346522 yedO 2781039 yedO Candidatus Protochlamydia amoebophila UWE25 1-aminocyclopropane-1-carboxylate deaminase (ACC deaminase) YP_008120.1 1345515 D 264201 CDS YP_008121.1 46446756 2781097 1346680..1346895 1 NC_005861.1 hypothetical protein 1346895 2781097 pc1122 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008121.1 1346680 D 264201 CDS YP_008122.1 46446757 2781098 complement(1347076..1347984) 1 NC_005861.1 hypothetical protein 1347984 2781098 pc1123 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008122.1 1347076 R 264201 CDS YP_008123.1 46446758 2781099 1348161..1349555 1 NC_005861.1 similar to calcium-dependent protein kinase 9; calcium-dependent protein kinase 9 1349555 2781099 pc1124 Candidatus Protochlamydia amoebophila UWE25 calcium-dependent protein kinase 9 YP_008123.1 1348161 D 264201 CDS YP_008124.1 46446759 2780171 complement(1349586..1350170) 1 NC_005861.1 strongly similar to hemolysin III; hemolysin III 1350170 hlyE 2780171 hlyE Candidatus Protochlamydia amoebophila UWE25 hemolysin III YP_008124.1 1349586 R 264201 CDS YP_008125.1 46446760 2781079 complement(1350529..1350819) 1 NC_005861.1 hypothetical protein 1350819 2781079 pc1126 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008125.1 1350529 R 264201 CDS YP_008126.1 46446761 2781080 complement(1351276..1351482) 1 NC_005861.1 hypothetical protein 1351482 2781080 pc1127 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008126.1 1351276 R 264201 CDS YP_008127.1 46446762 2781081 1351926..1354250 1 NC_005861.1 hypothetical protein 1354250 2781081 pc1128 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008127.1 1351926 D 264201 CDS YP_008128.1 46446763 2779551 complement(1354285..1357605) 1 NC_005861.1 hypothetical protein 1357605 2779551 pc1129 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008128.1 1354285 R 264201 CDS YP_008129.1 46446764 2779552 complement(1358617..1358799) 1 NC_005861.1 hypothetical protein 1358799 2779552 pc1130 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008129.1 1358617 R 264201 CDS YP_008130.1 46446765 2779553 1358842..1359810 1 NC_005861.1 hypothetical protein 1359810 2779553 pc1131 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008130.1 1358842 D 264201 CDS YP_008131.1 46446766 2779499 1360259..1361053 1 NC_005861.1 similar to pyrroline-5-carboxylate reductase, proC; pyrroline-5-carboxylate reductase 1361053 proC 2779499 proC Candidatus Protochlamydia amoebophila UWE25 pyrroline-5-carboxylate reductase YP_008131.1 1360259 D 264201 CDS YP_008132.1 46446767 2779436 1361163..1361642 1 NC_005861.1 strongly similar to peptidylprolyl isomerase II (cyclophilin A); peptidylprolyl isomerase II 1361642 ppiB 2779436 ppiB Candidatus Protochlamydia amoebophila UWE25 peptidylprolyl isomerase II YP_008132.1 1361163 D 264201 CDS YP_008133.1 46446768 2781183 1362082..1362756 1 NC_005861.1 hypothetical protein 1362756 2781183 pc1134 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008133.1 1362082 D 264201 CDS YP_008134.1 46446769 2781184 1363980..1366235 1 NC_005861.1 hypothetical protein 1366235 2781184 pc1135 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008134.1 1363980 D 264201 CDS YP_008135.1 46446770 2781185 1366304..1367545 1 NC_005861.1 hypothetical protein 1367545 2781185 pc1136 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008135.1 1366304 D 264201 CDS YP_008136.1 46446771 2779965 1367579..1368811 1 NC_005861.1 hypothetical protein 1368811 2779965 pc1137 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008136.1 1367579 D 264201 CDS YP_008137.1 46446772 2779966 complement(1369113..1370231) 1 NC_005861.1 hypothetical protein 1370231 2779966 pc1138 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008137.1 1369113 R 264201 CDS YP_008138.1 46446773 2779967 1370472..1370657 1 NC_005861.1 hypothetical protein 1370657 2779967 pc1139 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008138.1 1370472 D 264201 CDS YP_008139.1 46446774 2779756 1370917..1371102 1 NC_005861.1 hypothetical protein 1371102 2779756 pc1140 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008139.1 1370917 D 264201 CDS YP_008140.1 46446775 2779757 1371075..1371659 1 NC_005861.1 hypothetical protein 1371659 2779757 pc1141 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008140.1 1371075 D 264201 CDS YP_008141.1 46446776 2779758 1372384..1374156 1 NC_005861.1 hypothetical protein 1374156 2779758 pc1142 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008141.1 1372384 D 264201 CDS YP_008142.1 46446777 2780526 complement(1374334..1375344) 1 NC_005861.1 hypothetical protein 1375344 2780526 pc1143 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008142.1 1374334 R 264201 CDS YP_008143.1 46446778 2780527 1375609..1375827 1 NC_005861.1 hypothetical protein 1375827 2780527 pc1144 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008143.1 1375609 D 264201 CDS YP_008144.1 46446779 2780528 1376309..1376572 1 NC_005861.1 hypothetical protein 1376572 2780528 pc1145 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008144.1 1376309 D 264201 CDS YP_008145.1 46446780 2780579 1376736..1377008 1 NC_005861.1 hypothetical protein 1377008 2780579 pc1146 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008145.1 1376736 D 264201 CDS YP_008146.1 46446781 2780580 1377330..1377872 1 NC_005861.1 hypothetical protein 1377872 2780580 pc1147 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008146.1 1377330 D 264201 CDS YP_008147.1 46446782 2780581 1377919..1378458 1 NC_005861.1 hypothetical protein 1378458 2780581 pc1148 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008147.1 1377919 D 264201 CDS YP_008148.1 46446783 2780137 1378476..1378940 1 NC_005861.1 hypothetical protein 1378940 2780137 pc1149 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008148.1 1378476 D 264201 CDS YP_008149.1 46446784 2780138 1378969..1379208 1 NC_005861.1 hypothetical protein 1379208 2780138 pc1150 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008149.1 1378969 D 264201 CDS YP_008150.1 46446785 2779637 complement(1379613..1380548) 1 NC_005861.1 hypothetical protein 1380548 2779637 pc1151 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008150.1 1379613 R 264201 CDS YP_008151.1 46446786 2780877 1381433..1382344 1 NC_005861.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1382344 fabI 2780877 fabI Candidatus Protochlamydia amoebophila UWE25 enoyl-ACP reductase YP_008151.1 1381433 D 264201 CDS YP_008152.1 46446787 2779638 complement(1382535..1383407) 1 NC_005861.1 hypothetical protein 1383407 2779638 pc1153 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008152.1 1382535 R 264201 CDS YP_008153.1 46446788 2779639 complement(1383411..1384520) 1 NC_005861.1 hypothetical protein 1384520 2779639 pc1154 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008153.1 1383411 R 264201 CDS YP_008154.1 46446789 2779504 complement(1384641..1384916) 1 NC_005861.1 hypothetical protein 1384916 2779504 pc1155 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008154.1 1384641 R 264201 CDS YP_008155.1 46446790 2780155 complement(1384921..1385628) 1 NC_005861.1 similar to 3-ketoacyl-acyl carrier protein reductase, fabG; 3-ketoacyl-ACP reductase 1385628 fabG 2780155 fabG Candidatus Protochlamydia amoebophila UWE25 3-ketoacyl-ACP reductase YP_008155.1 1384921 R 264201 CDS YP_008156.1 46446791 2781340 complement(1385628..1386416) 1 NC_005861.1 similar to dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein); dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein) 1386416 folB 2781340 folB Candidatus Protochlamydia amoebophila UWE25 dGTP pyrophosphohydrolase/dihydroneopterin aldolase (mutT/folB, fusion protein) YP_008156.1 1385628 R 264201 CDS YP_008157.1 46446792 2779505 complement(1386409..1387287) 1 NC_005861.1 hypothetical protein 1387287 2779505 pc1158 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008157.1 1386409 R 264201 CDS YP_008158.1 46446793 2779506 1387312..1387884 1 NC_005861.1 hypothetical protein 1387884 2779506 pc1159 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008158.1 1387312 D 264201 CDS YP_008159.1 46446794 2779987 1388187..1388666 1 NC_005861.1 hypothetical protein 1388666 2779987 pc1160 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008159.1 1388187 D 264201 CDS YP_008160.1 46446795 2779831 1388733..1389383 1 NC_005861.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1389383 dnaQ 2779831 dnaQ Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III subunit epsilon YP_008160.1 1388733 D 264201 CDS YP_008161.1 46446796 2779988 1389380..1390189 1 NC_005861.1 hypothetical protein 1390189 2779988 pc1162 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008161.1 1389380 D 264201 CDS YP_008162.1 46446797 2780219 complement(1390216..1392156) 1 NC_005861.1 similar to transport ATP binding protein; transport ATP binding protein 1392156 msbA 2780219 msbA Candidatus Protochlamydia amoebophila UWE25 transport ATP binding protein YP_008162.1 1390216 R 264201 CDS YP_008163.1 46446798 2779848 complement(1392164..1393114) 1 NC_005861.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1393114 accA 2779848 accA Candidatus Protochlamydia amoebophila UWE25 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_008163.1 1392164 R 264201 CDS YP_008164.1 46446799 2779989 complement(1393174..1394151) 1 NC_005861.1 hypothetical protein 1394151 2779989 pc1165 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008164.1 1393174 R 264201 CDS YP_008165.1 46446800 2781100 1394316..1394612 1 NC_005861.1 hypothetical protein 1394612 2781100 pc1166 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008165.1 1394316 D 264201 CDS YP_008166.1 46446801 2781101 complement(1394602..1396098) 1 NC_005861.1 hypothetical protein 1396098 2781101 pc1167 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008166.1 1394602 R 264201 CDS YP_008167.1 46446802 2780708 complement(1396313..1396675) 1 NC_005861.1 similar to integration host factor; integration host factor 1396675 himD 2780708 himD Candidatus Protochlamydia amoebophila UWE25 integration host factor YP_008167.1 1396313 R 264201 CDS YP_008168.1 46446803 2779721 complement(1396901..1398178) 1 NC_005861.1 strongly similar to tyrosine-tRNA ligase; tyrosine-tRNA ligase 1398178 tyrS 2779721 tyrS Candidatus Protochlamydia amoebophila UWE25 tyrosine-tRNA ligase YP_008168.1 1396901 R 264201 CDS YP_008169.1 46446804 2781102 1398232..1398474 1 NC_005861.1 hypothetical protein 1398474 2781102 pc1170 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008169.1 1398232 D 264201 CDS YP_008170.1 46446805 2779621 1398711..1399103 1 NC_005861.1 similar to hyperosmotically inducible periplasmic protein; hypothetical protein 1399103 osmY 2779621 osmY Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008170.1 1398711 D 264201 CDS YP_008171.1 46446806 2780794 1399361..1399987 1 NC_005861.1 hypothetical protein 1399987 2780794 pc1172 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008171.1 1399361 D 264201 CDS YP_008172.1 46446807 2780795 complement(1400051..1400809) 1 NC_005861.1 hypothetical protein 1400809 2780795 pc1173 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008172.1 1400051 R 264201 CDS YP_008173.1 46446808 2780796 1401119..1401973 1 NC_005861.1 hypothetical protein 1401973 2780796 pc1174 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008173.1 1401119 D 264201 CDS YP_008174.1 46446809 2780519 1402002..1402700 1 NC_005861.1 similar to ribose 5-phosphate isomerase A; ribose 5-phosphate isomerase A 1402700 rpiA 2780519 rpiA Candidatus Protochlamydia amoebophila UWE25 ribose 5-phosphate isomerase A YP_008174.1 1402002 D 264201 CDS YP_008175.1 46446810 2780195 1402818..1403231 1 NC_005861.1 hypothetical protein 1403231 2780195 pc1176 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008175.1 1402818 D 264201 CDS YP_008176.1 46446811 2779666 complement(1403285..1403578) 1 NC_005861.1 strongly similar to PTS phosphocarrier protein HPr; PTS phosphocarrier protein HPr 1403578 ptsH 2779666 ptsH Candidatus Protochlamydia amoebophila UWE25 PTS phosphocarrier protein HPr YP_008176.1 1403285 R 264201 CDS YP_008177.1 46446812 2779787 1403990..1405834 1 NC_005861.1 similar to oligoendopeptidase F; oligoendopeptidase F 1405834 pepF 2779787 pepF Candidatus Protochlamydia amoebophila UWE25 oligoendopeptidase F YP_008177.1 1403990 D 264201 CDS YP_008178.1 46446813 2779941 1406041..1406361 1 NC_005861.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 1406361 groES 2779941 groES Candidatus Protochlamydia amoebophila UWE25 co-chaperonin GroES YP_008178.1 1406041 D 264201 CDS YP_008179.1 46446814 2780167 1406392..1408014 1 NC_005861.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 1408014 groEL 2780167 groEL Candidatus Protochlamydia amoebophila UWE25 molecular chaperone GroEL YP_008179.1 1406392 D 264201 CDS YP_008180.1 46446815 2780196 1408863..1409825 1 NC_005861.1 UV damage endonuclease 1409825 uvsE 2780196 uvsE Candidatus Protochlamydia amoebophila UWE25 UV damage endonuclease YP_008180.1 1408863 D 264201 CDS YP_008181.1 46446816 2780468 1410213..1411289 1 NC_005861.1 similar to DNA topoisomerase I; DNA topoisomerase I 1411289 topI 2780468 topI Candidatus Protochlamydia amoebophila UWE25 DNA topoisomerase I YP_008181.1 1410213 D 264201 CDS YP_008182.1 46446817 2780789 complement(1411656..1412741) 1 NC_005861.1 similar to mannosyltransferase; mannosyltransferase 1412741 wbdA 2780789 wbdA Candidatus Protochlamydia amoebophila UWE25 mannosyltransferase YP_008182.1 1411656 R 264201 CDS YP_008183.1 46446818 2780197 complement(1412895..1414538) 1 NC_005861.1 hypothetical protein 1414538 2780197 pc1184 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008183.1 1412895 R 264201 CDS YP_008184.1 46446819 2781431 1415353..1415568 1 NC_005861.1 hypothetical protein 1415568 2781431 pc1185 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008184.1 1415353 D 264201 CDS YP_008185.1 46446820 2781432 1415704..1416126 1 NC_005861.1 hypothetical protein 1416126 2781432 pc1186 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008185.1 1415704 D 264201 CDS YP_008186.1 46446821 2781433 1416324..1416743 1 NC_005861.1 hypothetical protein 1416743 2781433 pc1187 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008186.1 1416324 D 264201 CDS YP_008187.1 46446822 2780752 complement(1416865..1417329) 1 NC_005861.1 similar to outer membrane protein tspO; outer membrane protein tspO 1417329 tspO 2780752 tspO Candidatus Protochlamydia amoebophila UWE25 outer membrane protein tspO YP_008187.1 1416865 R 264201 CDS YP_008188.1 46446823 2781122 1417628..1418515 1 NC_005861.1 strongly similar to cytochrome o ubiquinol oxidase chain II cyoA; cytochrome o ubiquinol oxidase chain II cyoA 1418515 cyoA 2781122 cyoA Candidatus Protochlamydia amoebophila UWE25 cytochrome o ubiquinol oxidase chain II cyoA YP_008188.1 1417628 D 264201 CDS YP_008189.1 46446824 2781123 1418523..1420484 1 NC_005861.1 strongly similar to cytochrome o ubiquinol oxidase chain I cyoB; cytochrome o ubiquinol oxidase chain I cyoB 1420484 cyoB 2781123 cyoB Candidatus Protochlamydia amoebophila UWE25 cytochrome o ubiquinol oxidase chain I cyoB YP_008189.1 1418523 D 264201 CDS YP_008190.1 46446825 2781405 1420493..1421128 1 NC_005861.1 strongly similar to cytochrome o ubiquinol oxidase chain III cyoC; cytochrome o ubiquinol oxidase chain III cyoC 1421128 cyoC 2781405 cyoC Candidatus Protochlamydia amoebophila UWE25 cytochrome o ubiquinol oxidase chain III cyoC YP_008190.1 1420493 D 264201 CDS YP_008191.1 46446826 2781406 1421129..1421491 1 NC_005861.1 similar to cytochrome O ubiquinol oxidase chain IV cyoD; cytochrome O ubiquinol oxidase chain IV cyoD 1421491 cyoD 2781406 cyoD Candidatus Protochlamydia amoebophila UWE25 cytochrome O ubiquinol oxidase chain IV cyoD YP_008191.1 1421129 D 264201 CDS YP_008192.1 46446827 2781407 1421484..1422335 1 NC_005861.1 strongly similar to heme O synthase (=protoheme IX farnesyltransferase ) cyoE; heme O synthase CyoE 1422335 cyoE 2781407 cyoE Candidatus Protochlamydia amoebophila UWE25 heme O synthase CyoE YP_008192.1 1421484 D 264201 CDS YP_008193.1 46446828 2780624 1423076..1428121 1 NC_005861.1 hypothetical protein 1428121 2780624 pc1194 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008193.1 1423076 D 264201 CDS YP_008194.1 46446829 2780625 1428388..1428618 1 NC_005861.1 hypothetical protein 1428618 2780625 pc1195 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008194.1 1428388 D 264201 CDS YP_008195.1 46446830 2780626 1428881..1429189 1 NC_005861.1 hypothetical protein 1429189 2780626 pc1196 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008195.1 1428881 D 264201 CDS YP_008196.1 46446831 2779389 1429613..1431613 1 NC_005861.1 hypothetical protein 1431613 2779389 pc1197 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008196.1 1429613 D 264201 CDS YP_008197.1 46446832 2779390 complement(1431772..1432131) 1 NC_005861.1 hypothetical protein 1432131 2779390 pc1198 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008197.1 1431772 R 264201 CDS YP_008198.1 46446833 2779391 1432423..1432755 1 NC_005861.1 hypothetical protein 1432755 2779391 pc1199 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008198.1 1432423 D 264201 CDS YP_008199.1 46446834 2781288 1432859..1433215 1 NC_005861.1 hypothetical protein 1433215 2781288 pc1200 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008199.1 1432859 D 264201 CDS YP_008200.1 46446835 2781289 complement(1433201..1433911) 1 NC_005861.1 hypothetical protein 1433911 2781289 pc1201 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008200.1 1433201 R 264201 CDS YP_008201.1 46446836 2781290 complement(1434125..1434541) 1 NC_005861.1 hypothetical protein 1434541 2781290 pc1202 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008201.1 1434125 R 264201 CDS YP_008202.1 46446837 2780012 complement(1434620..1435102) 1 NC_005861.1 hypothetical protein 1435102 2780012 pc1203 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008202.1 1434620 R 264201 CDS YP_008203.1 46446838 2780013 complement(1435267..1436049) 1 NC_005861.1 hypothetical protein 1436049 2780013 pc1204 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008203.1 1435267 R 264201 CDS YP_008204.1 46446839 2780014 complement(1436052..1436777) 1 NC_005861.1 hypothetical protein 1436777 2780014 pc1205 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008204.1 1436052 R 264201 CDS YP_008205.1 46446840 2781071 1437066..1437299 1 NC_005861.1 hypothetical protein 1437299 2781071 pc1206 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008205.1 1437066 D 264201 CDS YP_008206.1 46446841 2781072 1437598..1439001 1 NC_005861.1 hypothetical protein 1439001 2781072 pc1207 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008206.1 1437598 D 264201 CDS YP_008207.1 46446842 2781073 complement(1439003..1441525) 1 NC_005861.1 hypothetical protein 1441525 2781073 pc1208 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008207.1 1439003 R 264201 CDS YP_008208.1 46446843 2780823 1441658..1441840 1 NC_005861.1 hypothetical protein 1441840 2780823 pc1209 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008208.1 1441658 D 264201 CDS YP_008209.1 46446844 2780824 complement(1442127..1442309) 1 NC_005861.1 hypothetical protein 1442309 2780824 pc1210 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008209.1 1442127 R 264201 CDS YP_008210.1 46446845 2779823 1442396..1443226 1 NC_005861.1 similar to metalloprotease; metalloprotease 1443226 cnp 2779823 cnp Candidatus Protochlamydia amoebophila UWE25 metalloprotease YP_008210.1 1442396 D 264201 CDS YP_008211.1 46446846 2780825 1443308..1444417 1 NC_005861.1 hypothetical protein 1444417 2780825 pc1212 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008211.1 1443308 D 264201 CDS YP_008212.1 46446847 2779764 1444898..1445164 1 NC_005861.1 hypothetical protein 1445164 2779764 pc1213 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008212.1 1444898 D 264201 CDS YP_008213.1 46446848 2779765 1445318..1445653 1 NC_005861.1 hypothetical protein 1445653 2779765 pc1214 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008213.1 1445318 D 264201 CDS YP_008214.1 46446849 2779766 1446294..1446674 1 NC_005861.1 hypothetical protein 1446674 2779766 pc1215 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008214.1 1446294 D 264201 CDS YP_008215.1 46446850 2780565 1446833..1447984 1 NC_005861.1 hypothetical protein 1447984 2780565 pc1216 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008215.1 1446833 D 264201 CDS YP_008216.1 46446851 2779854 1448054..1448743 1 NC_005861.1 similar to ABC transporter, ATP-binding protein; ABC transporter ATP-binding protein 1448743 glnQ 2779854 glnQ Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_008216.1 1448054 D 264201 CDS YP_008217.1 46446852 2780566 1448740..1449804 1 NC_005861.1 hypothetical protein 1449804 2780566 pc1218 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008217.1 1448740 D 264201 CDS YP_008218.1 46446853 2779620 1449808..1451268 1 NC_005861.1 similar to outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump; outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump 1451268 oprM 2779620 oprM Candidatus Protochlamydia amoebophila UWE25 outer membrane protein of AcrAB(MexAB)-OprM multidrug efflux pump YP_008218.1 1449808 D 264201 CDS YP_008219.1 46446854 2780936 1451379..1452686 1 NC_005861.1 similar to 7-dehydrocholesterol reductase; 7-dehydrocholesterol reductase 1452686 dhcR7 2780936 dhcR7 Candidatus Protochlamydia amoebophila UWE25 7-dehydrocholesterol reductase YP_008219.1 1451379 D 264201 CDS YP_008220.1 46446855 2779580 1452876..1455452 1 NC_005861.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1455452 mutS 2779580 mutS Candidatus Protochlamydia amoebophila UWE25 DNA mismatch repair protein MutS YP_008220.1 1452876 D 264201 CDS YP_008221.1 46446856 2780567 1455649..1455849 1 NC_005861.1 hypothetical protein 1455849 2780567 pc1222 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008221.1 1455649 D 264201 CDS YP_008222.1 46446857 2779562 1456080..1456802 1 NC_005861.1 hypothetical protein 1456802 2779562 pc1223 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008222.1 1456080 D 264201 CDS YP_008223.1 46446858 2779563 1456803..1457747 1 NC_005861.1 hypothetical protein 1457747 2779563 pc1224 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008223.1 1456803 D 264201 CDS YP_008224.1 46446859 2779422 1457750..1459987 1 NC_005861.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1459987 priA 2779422 priA Candidatus Protochlamydia amoebophila UWE25 primosome assembly protein PriA YP_008224.1 1457750 D 264201 CDS YP_008225.1 46446860 2779564 1460323..1461750 1 NC_005861.1 hypothetical protein 1461750 2779564 pc1226 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008225.1 1460323 D 264201 CDS YP_008226.1 46446861 2781415 1461806..1462048 1 NC_005861.1 hypothetical protein 1462048 2781415 pc1227 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008226.1 1461806 D 264201 CDS YP_008227.1 46446862 2780647 1462049..1463638 1 NC_005861.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1463638 lysS 2780647 lysS Candidatus Protochlamydia amoebophila UWE25 lysyl-tRNA synthetase YP_008227.1 1462049 D 264201 CDS YP_008228.1 46446863 2781416 1463679..1463954 1 NC_005861.1 hypothetical protein 1463954 2781416 pc1229 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008228.1 1463679 D 264201 CDS YP_008229.1 46446864 2781417 complement(1464063..1465328) 1 NC_005861.1 hypothetical protein 1465328 2781417 pc1230 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008229.1 1464063 R 264201 CDS YP_008230.1 46446865 2780027 1465793..1466857 1 NC_005861.1 hypothetical protein 1466857 2780027 pc1231 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008230.1 1465793 D 264201 CDS YP_008231.1 46446866 2780028 1466878..1467234 1 NC_005861.1 hypothetical protein 1467234 2780028 pc1232 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008231.1 1466878 D 264201 CDS YP_008232.1 46446867 2780029 complement(1467290..1468597) 1 NC_005861.1 hypothetical protein 1468597 2780029 pc1233 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008232.1 1467290 R 264201 CDS YP_008233.1 46446868 2780335 complement(1468920..1469171) 1 NC_005861.1 hypothetical protein 1469171 2780335 pc1234 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008233.1 1468920 R 264201 CDS YP_008234.1 46446869 2781443 complement(1469182..1470618) 1 NC_005861.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1470618 cysS 2781443 cysS Candidatus Protochlamydia amoebophila UWE25 cysteinyl-tRNA synthetase YP_008234.1 1469182 R 264201 CDS YP_008235.1 46446870 2780135 complement(1470823..1473540) 1 NC_005861.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 1473540 aas 2780135 aas Candidatus Protochlamydia amoebophila UWE25 acylglycerophosphoethanolamine acyltransferase YP_008235.1 1470823 R 264201 CDS YP_008236.1 46446871 2779582 complement(1473872..1474225) 1 NC_005861.1 similar to dGTP pyrophosphohydrolase, mutT; dGTP pyrophosphohydrolase, mutT 1474225 mutT 2779582 mutT Candidatus Protochlamydia amoebophila UWE25 dGTP pyrophosphohydrolase, mutT YP_008236.1 1473872 R 264201 CDS YP_008237.1 46446872 2780154 complement(1474303..1475559) 1 NC_005861.1 FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 1475559 fabF 2780154 fabF Candidatus Protochlamydia amoebophila UWE25 3-oxoacyl-ACP synthase YP_008237.1 1474303 R 264201 CDS YP_008238.1 46446873 2780336 complement(1475642..1476022) 1 NC_005861.1 hypothetical protein 1476022 2780336 pc1239 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008238.1 1475642 R 264201 CDS YP_008239.1 46446874 2780380 complement(1476326..1478503) 1 NC_005861.1 similar to glutamate-ammonia ligase (=glutamine synthetase) type III; glutamate-ammonia ligase (=glutamine synthetase) type III 1478503 glnA 2780380 glnA Candidatus Protochlamydia amoebophila UWE25 glutamate-ammonia ligase (=glutamine synthetase) type III YP_008239.1 1476326 R 264201 CDS YP_008240.1 46446875 2780337 complement(1478726..1479367) 1 NC_005861.1 hypothetical protein 1479367 2780337 pc1241 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008240.1 1478726 R 264201 CDS YP_008241.1 46446876 2780653 complement(1479460..1481181) 1 NC_005861.1 hypothetical protein 1481181 2780653 pc1242 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008241.1 1479460 R 264201 CDS YP_008242.1 46446877 2781014 complement(1481691..1482725) 1 NC_005861.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1482725 miaA 2781014 miaA Candidatus Protochlamydia amoebophila UWE25 tRNA delta(2)-isopentenylpyrophosphate transferase YP_008242.1 1481691 R 264201 CDS YP_008243.1 46446878 2780131 complement(1482874..1483227) 1 NC_005861.1 similar to sigma regulatory factor; sigma regulatory factor 1483227 spoIiaa 2780131 spoIiaa Candidatus Protochlamydia amoebophila UWE25 sigma regulatory factor YP_008243.1 1482874 R 264201 CDS YP_008244.1 46446879 2780838 1483362..1486175 1 NC_005861.1 similar to excinuclease ABC chain A; excinuclease ABC chain A 1486175 uvrA 2780838 uvrA Candidatus Protochlamydia amoebophila UWE25 excinuclease ABC chain A YP_008244.1 1483362 D 264201 CDS YP_008245.1 46446880 2780654 complement(1486626..1487396) 1 NC_005861.1 hypothetical protein 1487396 2780654 pc1246 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008245.1 1486626 R 264201 CDS YP_008246.1 46446881 2780006 complement(1487532..1488896) 1 NC_005861.1 similar to UDP-N-acetylmuramate-alanine ligase murC; UDP-N-acetylmuramate-alanine ligase murC 1488896 murC 2780006 murC Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylmuramate-alanine ligase murC YP_008246.1 1487532 R 264201 CDS YP_008247.1 46446882 2780521 complement(1488899..1490029) 1 NC_005861.1 similar to UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG 1490029 murG 2780521 murG Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase MurG YP_008247.1 1488899 R 264201 CDS YP_008248.1 46446883 2779423 complement(1490011..1491120) 1 NC_005861.1 similar to cell division protein ftsW; cell division protein ftsW 1491120 ftsW 2779423 ftsW Candidatus Protochlamydia amoebophila UWE25 cell division protein ftsW YP_008248.1 1490011 R 264201 CDS YP_008249.1 46446884 2779477 complement(1491127..1491861) 1 NC_005861.1 similar to muropeptidase (autolysin); muropeptidase (autolysin) 1491861 lytF 2779477 lytF Candidatus Protochlamydia amoebophila UWE25 muropeptidase (autolysin) YP_008249.1 1491127 R 264201 CDS YP_008250.1 46446885 2780007 complement(1491898..1493232) 1 NC_005861.1 similar to UDP-N-acetylmuramoylalanine-D-glutamate ligase murD; UDP-N-acetylmuramoylalanine-D-glutamate ligase murD 1493232 murD 2780007 murD Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylmuramoylalanine-D-glutamate ligase murD YP_008250.1 1491898 R 264201 CDS YP_008251.1 46446886 2780217 complement(1493247..1494479) 1 NC_005861.1 similar to phospho-N-acetylmuramoyl-pentapeptide-transferase mraY; phospho-N-acetylmuramoyl-pentapeptide- transferase mraY 1494479 mraY 2780217 mraY Candidatus Protochlamydia amoebophila UWE25 phospho-N-acetylmuramoyl-pentapeptide- transferase mraY YP_008251.1 1493247 R 264201 CDS YP_008252.1 46446887 2780520 complement(1494503..1495840) 1 NC_005861.1 similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate -D-alanyl-D-alanine-ligase murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate- D-alanyl-D-alanine-ligase murF 1495840 murF 2780520 murF Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate- D-alanyl-D-alanine-ligase murF YP_008252.1 1494503 R 264201 CDS YP_008253.1 46446888 2780655 complement(1495852..1496088) 1 NC_005861.1 hypothetical protein 1496088 2780655 pc1254 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008253.1 1495852 R 264201 CDS YP_008254.1 46446889 2780702 1496370..1497515 1 NC_005861.1 similar to eucaryotic stearoyl-CoA 9-desaturase; eucaryotic stearoyl-CoA 9-desaturase 1497515 2780702 pc1255 Candidatus Protochlamydia amoebophila UWE25 eucaryotic stearoyl-CoA 9-desaturase YP_008254.1 1496370 D 264201 CDS YP_008255.1 46446890 2780545 1497846..1499663 1 NC_005861.1 similar to virulence protein ipgD (Shigella flexneri plasmid pINV); virulence protein IpgD 1499663 ipgD 2780545 ipgD Candidatus Protochlamydia amoebophila UWE25 virulence protein IpgD YP_008255.1 1497846 D 264201 CDS YP_008256.1 46446891 2780703 1499957..1500772 1 NC_005861.1 hypothetical protein 1500772 2780703 pc1257 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008256.1 1499957 D 264201 CDS YP_008257.1 46446892 2780704 1501002..1501199 1 NC_005861.1 hypothetical protein 1501199 2780704 pc1258 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008257.1 1501002 D 264201 CDS YP_008258.1 46446893 2780168 1501351..1502955 1 NC_005861.1 strongly similar to heat shock protein GroEL; molecular chaperone GroEL 1502955 groEl 2780168 groEl Candidatus Protochlamydia amoebophila UWE25 molecular chaperone GroEL YP_008258.1 1501351 D 264201 CDS YP_008259.1 46446894 2780353 complement(1503486..1504886) 1 NC_005861.1 hypothetical protein 1504886 2780353 pc1260 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008259.1 1503486 R 264201 CDS YP_008260.1 46446895 2780354 1505354..1505800 1 NC_005861.1 hypothetical protein 1505800 2780354 pc1261 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008260.1 1505354 D 264201 CDS YP_008261.1 46446896 2779786 1506735..1508513 1 NC_005861.1 similar to phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase 1508513 pgm 2779786 pgm Candidatus Protochlamydia amoebophila UWE25 phosphoglucomutase/phosphomannomutase YP_008261.1 1506735 D 264201 CDS YP_008262.1 46446897 2780355 complement(1508629..1509456) 1 NC_005861.1 hypothetical protein 1509456 2780355 pc1263 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008262.1 1508629 R 264201 CDS YP_008263.1 46446898 2780637 complement(1509676..1510731) 1 NC_005861.1 similar to sialic acid synthase; sialic acid synthase 1510731 neuB 2780637 neuB Candidatus Protochlamydia amoebophila UWE25 sialic acid synthase YP_008263.1 1509676 R 264201 CDS YP_008264.1 46446899 2779739 complement(1510740..1511963) 1 NC_005861.1 similar to ATP-dependent RNA helicase; ATP-dependent RNA helicase 1511963 deaD 2779739 deaD Candidatus Protochlamydia amoebophila UWE25 ATP-dependent RNA helicase YP_008264.1 1510740 R 264201 CDS YP_008265.1 46446900 2779642 complement(1511948..1512781) 1 NC_005861.1 hypothetical protein 1512781 2779642 pc1266 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008265.1 1511948 R 264201 CDS YP_008266.1 46446901 2779643 complement(1512760..1514835) 1 NC_005861.1 hypothetical protein 1514835 2779643 pc1267 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008266.1 1512760 R 264201 CDS YP_008267.1 46446902 2779644 1515171..1515848 1 NC_005861.1 hypothetical protein 1515848 2779644 pc1268 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008267.1 1515171 D 264201 CDS YP_008268.1 46446903 2780833 1515854..1516465 1 NC_005861.1 similar to SOS response regulator lexA; SOS response regulator lexA 1516465 lexA 2780833 lexA Candidatus Protochlamydia amoebophila UWE25 SOS response regulator lexA YP_008268.1 1515854 D 264201 CDS YP_008269.1 46446904 2779792 complement(1516627..1517490) 1 NC_005861.1 similar to CDPdiacylglycerol-serine O-phosphatidyltransferase; cdpdiacylglycerol-serine O-phosphatidyltransferase 1517490 pssA 2779792 pssA Candidatus Protochlamydia amoebophila UWE25 cdpdiacylglycerol-serine O-phosphatidyltransferase YP_008269.1 1516627 R 264201 CDS YP_008270.1 46446905 2779441 1518275..1521250 1 NC_005861.1 hypothetical protein 1521250 2779441 pc1271 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008270.1 1518275 D 264201 CDS YP_008271.1 46446906 2779442 1522243..1524099 1 NC_005861.1 hypothetical protein 1524099 2779442 pc1272 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008271.1 1522243 D 264201 CDS YP_008272.1 46446907 2779443 complement(1524407..1525651) 1 NC_005861.1 hypothetical protein 1525651 2779443 pc1273 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008272.1 1524407 R 264201 CDS YP_008273.1 46446908 2779606 1526503..1526919 1 NC_005861.1 hypothetical protein 1526919 2779606 pc1274 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008273.1 1526503 D 264201 CDS YP_008274.1 46446909 2779607 1526928..1527149 1 NC_005861.1 hypothetical protein 1527149 2779607 pc1275 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008274.1 1526928 D 264201 CDS YP_008275.1 46446910 2779608 1527642..1529645 1 NC_005861.1 hypothetical protein 1529645 2779608 pc1276 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008275.1 1527642 D 264201 CDS YP_008276.1 46446911 2780621 complement(1529832..1530257) 1 NC_005861.1 hypothetical protein 1530257 2780621 pc1277 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008276.1 1529832 R 264201 CDS YP_008277.1 46446912 2780622 1531436..1533631 1 NC_005861.1 hypothetical protein 1533631 2780622 pc1278 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008277.1 1531436 D 264201 CDS YP_008278.1 46446913 2780623 complement(1533886..1534161) 1 NC_005861.1 hypothetical protein 1534161 2780623 pc1279 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008278.1 1533886 R 264201 CDS YP_008279.1 46446914 2781216 complement(1534434..1534736) 1 NC_005861.1 hypothetical protein 1534736 2781216 pc1280 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008279.1 1534434 R 264201 CDS YP_008280.1 46446915 2781217 1535447..1535668 1 NC_005861.1 hypothetical protein 1535668 2781217 pc1281 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008280.1 1535447 D 264201 CDS YP_008281.1 46446916 2781218 complement(1535907..1539155) 1 NC_005861.1 hypothetical protein 1539155 2781218 pc1282 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008281.1 1535907 R 264201 CDS YP_008282.1 46446917 2780393 1539939..1540220 1 NC_005861.1 hypothetical protein 1540220 2780393 pc1283 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008282.1 1539939 D 264201 CDS YP_008283.1 46446918 2780394 1540514..1540768 1 NC_005861.1 hypothetical protein 1540768 2780394 pc1284 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008283.1 1540514 D 264201 CDS YP_008284.1 46446919 2780395 1540860..1541537 1 NC_005861.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1541537 trmB 2780395 trmB Candidatus Protochlamydia amoebophila UWE25 tRNA (guanine-N(7)-)-methyltransferase YP_008284.1 1540860 D 264201 CDS YP_008285.1 46446920 2781265 1541670..1542728 1 NC_005861.1 hypothetical protein 1542728 2781265 pc1286 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008285.1 1541670 D 264201 CDS YP_008286.1 46446921 2781266 complement(1542735..1542932) 1 NC_005861.1 hypothetical protein 1542932 2781266 pc1287 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008286.1 1542735 R 264201 CDS YP_008287.1 46446922 2781267 complement(1542955..1543944) 1 NC_005861.1 hypothetical protein 1543944 2781267 pc1288 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008287.1 1542955 R 264201 CDS YP_008288.1 46446923 2781377 1544115..1545557 1 NC_005861.1 hypothetical protein 1545557 2781377 pc1289 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008288.1 1544115 D 264201 CDS YP_008289.1 46446924 2781378 complement(1545573..1546436) 1 NC_005861.1 hypothetical protein 1546436 2781378 pc1290 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008289.1 1545573 R 264201 CDS YP_008290.1 46446925 2779691 complement(1546640..1548094) 1 NC_005861.1 similar to serine proteinase; serine proteinase 1548094 htrA 2779691 htrA Candidatus Protochlamydia amoebophila UWE25 serine proteinase YP_008290.1 1546640 R 264201 CDS YP_008291.1 46446926 2781379 complement(1548229..1549863) 1 NC_005861.1 hypothetical protein 1549863 2781379 pc1292 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008291.1 1548229 R 264201 CDS YP_008292.1 46446927 2779935 complement(1550216..1551205) 1 NC_005861.1 hypothetical protein 1551205 2779935 pc1293 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008292.1 1550216 R 264201 CDS YP_008293.1 46446928 2779936 1551192..1551419 1 NC_005861.1 hypothetical protein 1551419 2779936 pc1294 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008293.1 1551192 D 264201 CDS YP_008294.1 46446929 2779937 1551588..1552187 1 NC_005861.1 hypothetical protein 1552187 2779937 pc1295 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008294.1 1551588 D 264201 CDS YP_008295.1 46446930 2781273 complement(1552198..1553343) 1 NC_005861.1 hypothetical protein 1553343 2781273 pc1296 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008295.1 1552198 R 264201 CDS YP_008296.1 46446931 2779905 complement(1553340..1554245) 1 NC_005861.1 strongly similar to succinate-CoA ligase (ADP-forming) alpha chain; succinate-CoA ligase (ADP-forming) alpha chain 1554245 sucD 2779905 sucD Candidatus Protochlamydia amoebophila UWE25 succinate-CoA ligase (ADP-forming) alpha chain YP_008296.1 1553340 R 264201 CDS YP_008297.1 46446932 2780242 complement(1554249..1555418) 1 NC_005861.1 strongly similar to succinate-CoA ligase (ADP-forming) beta chain; succinate-CoA ligase (ADP-forming) beta chain 1555418 sucC 2780242 sucC Candidatus Protochlamydia amoebophila UWE25 succinate-CoA ligase (ADP-forming) beta chain YP_008297.1 1554249 R 264201 CDS YP_008298.1 46446933 2779424 1555569..1556498 1 NC_005861.1 strongly similar to signal recognition particle; signal recognition particle protein 1556498 ftsY 2779424 ftsY Candidatus Protochlamydia amoebophila UWE25 signal recognition particle protein YP_008298.1 1555569 D 264201 CDS YP_008299.1 46446934 2781274 1556564..1557079 1 NC_005861.1 hypothetical protein 1557079 2781274 pc1300 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008299.1 1556564 D 264201 CDS YP_008300.1 46446935 2781275 complement(1557076..1557627) 1 NC_005861.1 hypothetical protein 1557627 2781275 pc1301 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008300.1 1557076 R 264201 CDS YP_008301.1 46446936 2780448 1557808..1558776 1 NC_005861.1 similar to UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1558776 galE 2780448 galE Candidatus Protochlamydia amoebophila UWE25 UDP-glucose 4-epimerase YP_008301.1 1557808 D 264201 CDS YP_008302.1 46446937 2781350 complement(1559070..1559261) 1 NC_005861.1 hypothetical protein 1559261 2781350 pc1303 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008302.1 1559070 R 264201 CDS YP_008303.1 46446938 2781351 1559316..1559720 1 NC_005861.1 hypothetical protein 1559720 2781351 pc1304 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008303.1 1559316 D 264201 CDS YP_008304.1 46446939 2780309 complement(1559888..1561102) 1 NC_005861.1 similar to tyrosine-specific transport protein; tyrosine-specific transport protein 1561102 tyrP_4 2780309 tyrP_4 Candidatus Protochlamydia amoebophila UWE25 tyrosine-specific transport protein YP_008304.1 1559888 R 264201 CDS YP_008305.1 46446940 2780377 complement(1561129..1562952) 1 NC_005861.1 strongly similar to glutamine-fructose-6-phosphate transaminase (isomerizing); glutamine-fructose-6-phosphate transaminase (isomerizing) 1562952 glmS 2780377 glmS Candidatus Protochlamydia amoebophila UWE25 glutamine-fructose-6-phosphate transaminase (isomerizing) YP_008305.1 1561129 R 264201 CDS YP_008306.1 46446941 2780458 complement(1562980..1564443) 1 NC_005861.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 1564443 glmM 2780458 glmM Candidatus Protochlamydia amoebophila UWE25 phosphoglucosamine mutase YP_008306.1 1562980 R 264201 CDS YP_008307.1 46446942 2779816 1565019..1566293 1 NC_005861.1 similar to Poly(A) polymerase; Poly(A) polymerase 1566293 pcnB 2779816 pcnB Candidatus Protochlamydia amoebophila UWE25 Poly(A) polymerase YP_008307.1 1565019 D 264201 CDS YP_008308.1 46446943 2781352 1566274..1567044 1 NC_005861.1 hypothetical protein 1567044 2781352 pc1309 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008308.1 1566274 D 264201 CDS YP_008309.1 46446944 2780921 1567142..1567783 1 NC_005861.1 similar to dolichol-phosphate mannosyltransferase; dolichol-phosphate mannosyltransferase 1567783 dpm1 2780921 dpm1 Candidatus Protochlamydia amoebophila UWE25 dolichol-phosphate mannosyltransferase YP_008309.1 1567142 D 264201 CDS YP_008310.1 46446945 2781250 1567795..1568478 1 NC_005861.1 hypothetical protein 1568478 2781250 pc1311 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008310.1 1567795 D 264201 CDS YP_008311.2 161611305 2781442 1568475..1569644 1 NC_005861.1 similar to lipid A-disaccharide synthase; lipid A-disaccharide synthase 1569644 lpxB 2781442 lpxB Candidatus Protochlamydia amoebophila UWE25 lipid A-disaccharide synthase YP_008311.2 1568475 D 264201 CDS YP_008312.1 46446947 2781251 1569628..1570281 1 NC_005861.1 hypothetical protein 1570281 2781251 pc1313 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008312.1 1569628 D 264201 CDS YP_008313.1 46446948 2779809 complement(1570339..1571358) 1 NC_005861.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1571358 plsX 2779809 plsX Candidatus Protochlamydia amoebophila UWE25 glycerol-3-phosphate acyltransferase PlsX YP_008313.1 1570339 R 264201 CDS YP_008314.2 161611304 2781054 complement(1571379..1571561) 1 NC_005861.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1571561 rpmF 2781054 rpmF Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L32 YP_008314.2 1571379 R 264201 CDS YP_008315.1 46446950 2781252 complement(1571588..1572064) 1 NC_005861.1 hypothetical protein 1572064 2781252 pc1316 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008315.1 1571588 R 264201 CDS YP_008316.1 46446951 2780413 1572846..1574384 1 NC_005861.1 similar to ribonuclease G (axial filament protein); ribonuclease G (axial filament protein) 1574384 cafA 2780413 cafA Candidatus Protochlamydia amoebophila UWE25 ribonuclease G (axial filament protein) YP_008316.1 1572846 D 264201 CDS YP_008317.1 46446952 2779815 1574385..1575383 1 NC_005861.1 similar to glycerol-3-phosphate acyltransferase; glycerol-3-phosphate acyltransferase 1575383 ats1 2779815 ats1 Candidatus Protochlamydia amoebophila UWE25 glycerol-3-phosphate acyltransferase YP_008317.1 1574385 D 264201 CDS YP_008318.1 46446953 2780505 1575597..1575932 1 NC_005861.1 hypothetical protein 1575932 2780505 pc1319 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008318.1 1575597 D 264201 CDS YP_008319.1 46446954 2780506 1576161..1576910 1 NC_005861.1 hypothetical protein 1576910 2780506 pc1320 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008319.1 1576161 D 264201 CDS YP_008320.1 46446955 2780507 1577036..1577854 1 NC_005861.1 hypothetical protein 1577854 2780507 pc1321 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008320.1 1577036 D 264201 CDS YP_008321.1 46446956 2780698 1578026..1578358 1 NC_005861.1 hypothetical protein 1578358 2780698 pc1322 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008321.1 1578026 D 264201 CDS YP_008322.1 46446957 2780699 1578709..1579587 1 NC_005861.1 hypothetical protein 1579587 2780699 pc1323 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008322.1 1578709 D 264201 CDS YP_008323.1 46446958 2779500 complement(1580274..1581797) 1 NC_005861.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1581797 proS 2779500 proS Candidatus Protochlamydia amoebophila UWE25 prolyl-tRNA synthetase YP_008323.1 1580274 R 264201 CDS YP_008324.1 46446959 2779660 complement(1581944..1582786) 1 NC_005861.1 similar to 4-amino-4-deoxychorismate lyase; 4-amino-4-deoxychorismate lyase 1582786 pabC 2779660 pabC Candidatus Protochlamydia amoebophila UWE25 4-amino-4-deoxychorismate lyase YP_008324.1 1581944 R 264201 CDS YP_008325.1 46446960 2780700 complement(1582764..1583255) 1 NC_005861.1 hypothetical protein 1583255 2780700 pc1326 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008325.1 1582764 R 264201 CDS YP_008326.1 46446961 2779659 complement(1583393..1584697) 1 NC_005861.1 similar to para-aminobenzoate synthase component I; para-aminobenzoate synthase component I 1584697 pabB 2779659 pabB Candidatus Protochlamydia amoebophila UWE25 para-aminobenzoate synthase component I YP_008326.1 1583393 R 264201 CDS YP_008327.1 46446962 2780087 complement(1584897..1585634) 1 NC_005861.1 hypothetical protein 1585634 2780087 pc1328 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008327.1 1584897 R 264201 CDS YP_008328.1 46446963 2780088 complement(1585674..1586381) 1 NC_005861.1 hypothetical protein 1586381 2780088 pc1329 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008328.1 1585674 R 264201 CDS YP_008329.1 46446964 2780089 complement(1586385..1586897) 1 NC_005861.1 hypothetical protein 1586897 2780089 pc1330 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008329.1 1586385 R 264201 CDS YP_008330.1 46446965 2779421 complement(1586897..1587877) 1 NC_005861.1 strongly similar to peptide chain release factor RF-2; peptide chain release factor 2 1587877 prfB 2779421 prfB Candidatus Protochlamydia amoebophila UWE25 peptide chain release factor 2 YP_008330.1 1586897 R 264201 CDS YP_008331.1 46446966 2781383 1588424..1589269 1 NC_005861.1 hypothetical protein 1589269 2781383 pc1332 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008331.1 1588424 D 264201 CDS YP_008332.1 46446967 2781384 1590153..1591976 1 NC_005861.1 similar to ABC transporter ATP-binding protein; ABC transporter ATP-binding protein 1591976 2781384 pc1333 Candidatus Protochlamydia amoebophila UWE25 ABC transporter ATP-binding protein YP_008332.1 1590153 D 264201 CDS YP_008333.1 46446968 2779680 1592469..1592756 1 NC_005861.1 similar to thioredoxin peroxidase; thioredoxin peroxidase 1592756 tpx 2779680 tpx Candidatus Protochlamydia amoebophila UWE25 thioredoxin peroxidase YP_008333.1 1592469 D 264201 CDS YP_008334.1 46446969 2781385 1592839..1593366 1 NC_005861.1 hypothetical protein 1593366 2781385 pc1335 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008334.1 1592839 D 264201 CDS YP_008335.1 46446970 2780134 1593412..1593912 1 NC_005861.1 similar to aminoglycoside N6'-acetyltransferase; aminoglycoside N6'-acetyltransferase 1593912 aac 2780134 aac Candidatus Protochlamydia amoebophila UWE25 aminoglycoside N6'-acetyltransferase YP_008335.1 1593412 D 264201 CDS YP_008336.1 46446971 2780310 complement(1593986..1594591) 1 NC_005861.1 hypothetical protein 1594591 2780310 pc1337 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008336.1 1593986 R 264201 CDS YP_008337.1 46446972 2781129 complement(1594745..1595311) 1 NC_005861.1 strongly similar to 3-methyladenine-DNA glycosylase I; 3-methyladenine DNA glycosylase 1595311 tag 2781129 tag Candidatus Protochlamydia amoebophila UWE25 3-methyladenine DNA glycosylase YP_008337.1 1594745 R 264201 CDS YP_008338.1 46446973 2780311 complement(1595596..1595787) 1 NC_005861.1 hypothetical protein 1595787 2780311 pc1339 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008338.1 1595596 R 264201 CDS YP_008339.1 46446974 2780312 complement(1596033..1596254) 1 NC_005861.1 hypothetical protein 1596254 2780312 pc1340 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008339.1 1596033 R 264201 CDS YP_008340.1 46446975 2780847 1596253..1601547 1 NC_005861.1 hypothetical protein 1601547 2780847 pc1341 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008340.1 1596253 D 264201 CDS YP_008341.1 46446976 2780848 1602165..1602368 1 NC_005861.1 hypothetical protein 1602368 2780848 pc1342 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008341.1 1602165 D 264201 CDS YP_008342.1 46446977 2780692 complement(1602411..1603880) 1 NC_005861.1 similar to ADP/ATP translocase; ADP/ATP translocase 1603880 ntt_5 2780692 ntt_5 Candidatus Protochlamydia amoebophila UWE25 ADP/ATP translocase YP_008342.1 1602411 R 264201 CDS YP_008343.1 46446978 2779769 complement(1604083..1604430) 1 NC_005861.1 similar to arsenate reductase; arsenate reductase 1604430 arsC 2779769 arsC Candidatus Protochlamydia amoebophila UWE25 arsenate reductase YP_008343.1 1604083 R 264201 CDS YP_008344.1 46446979 2780849 1605369..1606040 1 NC_005861.1 hypothetical protein 1606040 2780849 pc1345 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008344.1 1605369 D 264201 CDS YP_008345.1 46446980 2779996 1606054..1608501 1 NC_005861.1 hypothetical protein 1608501 2779996 pc1346 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008345.1 1606054 D 264201 CDS YP_008346.1 46446981 2779997 complement(1608662..1610029) 1 NC_005861.1 hypothetical protein 1610029 2779997 pc1347 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008346.1 1608662 R 264201 CDS YP_008347.1 46446982 2779701 complement(1610455..1612776) 1 NC_005861.1 strongly similar to ribonucleoside-diphosphate reductase large chain; ribonucleoside-diphosphate reductase large chain 1612776 nrdA 2779701 nrdA Candidatus Protochlamydia amoebophila UWE25 ribonucleoside-diphosphate reductase large chain YP_008347.1 1610455 R 264201 CDS YP_008348.1 46446983 2779702 complement(1612788..1613759) 1 NC_005861.1 strongly similar to ribonucleoside-diphosphate reductase small chain; ribonucleoside-diphosphate reductase small chain 1613759 nrdB 2779702 nrdB Candidatus Protochlamydia amoebophila UWE25 ribonucleoside-diphosphate reductase small chain YP_008348.1 1612788 R 264201 CDS YP_008349.1 46446984 2779998 complement(1613746..1613931) 1 NC_005861.1 hypothetical protein 1613931 2779998 pc1350 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008349.1 1613746 R 264201 CDS YP_008350.1 46446985 2780057 complement(1615208..1615456) 1 NC_005861.1 hypothetical protein 1615456 2780057 pc1351 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008350.1 1615208 R 264201 CDS YP_008351.1 46446986 2780058 complement(1615438..1615665) 1 NC_005861.1 hypothetical protein 1615665 2780058 pc1352 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008351.1 1615438 R 264201 CDS YP_008352.1 46446987 2780059 1615851..1616288 1 NC_005861.1 hypothetical protein 1616288 2780059 pc1353 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008352.1 1615851 D 264201 CDS YP_008353.1 46446988 2781293 1616669..1618078 1 NC_005861.1 hypothetical protein 1618078 2781293 pc1354 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008353.1 1616669 D 264201 CDS YP_008354.1 46446989 2781294 complement(1618094..1620697) 1 NC_005861.1 hypothetical protein 1620697 2781294 pc1355 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008354.1 1618094 R 264201 CDS YP_008355.1 46446990 2781295 complement(1620670..1620855) 1 NC_005861.1 hypothetical protein 1620855 2781295 pc1356 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008355.1 1620670 R 264201 CDS YP_008356.1 46446991 2781253 complement(1620860..1621054) 1 NC_005861.1 hypothetical protein 1621054 2781253 pc1357 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008356.1 1620860 R 264201 CDS YP_008357.1 46446992 2781254 1621290..1621724 1 NC_005861.1 hypothetical protein 1621724 2781254 pc1358 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008357.1 1621290 D 264201 CDS YP_008358.1 46446993 2781255 1621818..1623983 1 NC_005861.1 hypothetical protein 1623983 2781255 pc1359 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008358.1 1621818 D 264201 CDS YP_008359.1 46446994 2780568 1623980..1626811 1 NC_005861.1 hypothetical protein 1626811 2780568 pc1360 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008359.1 1623980 D 264201 CDS YP_008360.1 46446995 2780569 1626808..1628703 1 NC_005861.1 hypothetical protein 1628703 2780569 pc1361 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008360.1 1626808 D 264201 CDS YP_008361.1 46446996 2781315 complement(1628686..1629873) 1 NC_005861.1 strongly similar to acetate kinase; acetate kinase 1629873 ackA 2781315 ackA Candidatus Protochlamydia amoebophila UWE25 acetate kinase YP_008361.1 1628686 R 264201 CDS YP_008362.1 46446997 2780570 1630105..1633470 1 NC_005861.1 hypothetical protein 1633470 2780570 pc1363 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008362.1 1630105 D 264201 CDS YP_008363.1 46446998 2780060 complement(1633654..1634979) 1 NC_005861.1 strongly similar to two-component response regulator; two-component response regulator 1634979 2780060 pc1364 Candidatus Protochlamydia amoebophila UWE25 two-component response regulator YP_008363.1 1633654 R 264201 CDS YP_008364.1 46446999 2780061 complement(1635004..1636236) 1 NC_005861.1 similar to two-component sensor histidine kinase; two-component sensor histidine kinase 1636236 2780061 pc1365 Candidatus Protochlamydia amoebophila UWE25 two-component sensor histidine kinase YP_008364.1 1635004 R 264201 CDS YP_008365.1 46447000 2780062 1636644..1636862 1 NC_005861.1 hypothetical protein 1636862 2780062 pc1366 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008365.1 1636644 D 264201 CDS YP_008366.1 46447001 2779570 1637036..1637656 1 NC_005861.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1637656 rpsD 2779570 rpsD Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S4 YP_008366.1 1637036 D 264201 CDS YP_008367.1 46447002 2780063 1637747..1637995 1 NC_005861.1 hypothetical protein 1637995 2780063 pc1368 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008367.1 1637747 D 264201 CDS YP_008368.1 46447003 2779668 1638094..1639224 1 NC_005861.1 similar to glycosyltransferase; glycosyltransferase 1639224 2779668 pc1369 Candidatus Protochlamydia amoebophila UWE25 glycosyltransferase YP_008368.1 1638094 D 264201 CDS YP_008369.1 46447004 2779669 complement(1639466..1640914) 1 NC_005861.1 hypothetical protein 1640914 2779669 pc1370 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008369.1 1639466 R 264201 CDS YP_008370.1 46447005 2779819 complement(1640925..1642700) 1 NC_005861.1 GTP; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 1642700 pckG 2779819 pckG Candidatus Protochlamydia amoebophila UWE25 phosphoenolpyruvate carboxykinase YP_008370.1 1640925 R 264201 CDS YP_008371.1 46447006 2780218 complement(1642725..1643816) 1 NC_005861.1 strongly similar to rod shape-determining protein mreB; rod shape-determining protein MreB 1643816 mreB 2780218 mreB Candidatus Protochlamydia amoebophila UWE25 rod shape-determining protein MreB YP_008371.1 1642725 R 264201 CDS YP_008372.1 46447007 2779670 complement(1643890..1644075) 1 NC_005861.1 hypothetical protein 1644075 2779670 pc1373 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008372.1 1643890 R 264201 CDS YP_008373.1 46447008 2780350 complement(1644327..1647812) 1 NC_005861.1 hypothetical protein 1647812 2780350 pc1374 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008373.1 1644327 R 264201 CDS YP_008374.1 46447009 2780384 1648434..1649741 1 NC_005861.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1649741 tig 2780384 tig Candidatus Protochlamydia amoebophila UWE25 trigger factor YP_008374.1 1648434 D 264201 CDS YP_008375.1 46447010 2779715 1650179..1650802 1 NC_005861.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1650802 clpP 2779715 clpP Candidatus Protochlamydia amoebophila UWE25 ATP-dependent Clp protease proteolytic subunit YP_008375.1 1650179 D 264201 CDS YP_008376.1 46447011 2779716 1651041..1652282 1 NC_005861.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1652282 clpX 2779716 clpX Candidatus Protochlamydia amoebophila UWE25 ATP-dependent protease ATP-binding subunit ClpX YP_008376.1 1651041 D 264201 CDS YP_008377.1 46447012 2780351 1652477..1653226 1 NC_005861.1 hypothetical protein 1653226 2780351 pc1378 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008377.1 1652477 D 264201 CDS YP_008378.1 46447013 2780352 complement(1653231..1654154) 1 NC_005861.1 hypothetical protein 1654154 2780352 pc1379 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008378.1 1653231 R 264201 CDS YP_008379.1 46447014 2780591 1654345..1656954 1 NC_005861.1 hypothetical protein 1656954 2780591 pc1380 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008379.1 1654345 D 264201 CDS YP_008380.1 46447015 2780592 1657029..1658273 1 NC_005861.1 hypothetical protein 1658273 2780592 pc1381 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008380.1 1657029 D 264201 CDS YP_008381.1 46447016 2780593 1658367..1659815 1 NC_005861.1 hypothetical protein 1659815 2780593 pc1382 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008381.1 1658367 D 264201 CDS YP_008382.1 46447017 2781000 1659904..1661211 1 NC_005861.1 hypothetical protein 1661211 2781000 pc1383 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008382.1 1659904 D 264201 CDS YP_008383.1 46447018 2780587 1661342..1661914 1 NC_005861.1 similar to low calcium response protein H; low calcium response protein H 1661914 lcrH 2780587 lcrH Candidatus Protochlamydia amoebophila UWE25 low calcium response protein H YP_008383.1 1661342 D 264201 CDS YP_008384.1 46447019 2781001 1662033..1664282 1 NC_005861.1 hypothetical protein 1664282 2781001 pc1385 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008384.1 1662033 D 264201 CDS YP_008385.1 46447020 2781276 1664295..1664888 1 NC_005861.1 similar to low calcium response protein H; low calcium response protein H 1664888 lcrH 2781276 lcrH Candidatus Protochlamydia amoebophila UWE25 low calcium response protein H YP_008385.1 1664295 D 264201 CDS YP_008386.1 46447021 2781002 1664891..1665565 1 NC_005861.1 hypothetical protein 1665565 2781002 pc1387 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008386.1 1664891 D 264201 CDS YP_008387.1 46447022 2779832 1665596..1666546 1 NC_005861.1 hypothetical protein 1666546 2779832 pc1388 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008387.1 1665596 D 264201 CDS YP_008388.1 46447023 2779833 1666578..1667660 1 NC_005861.1 hypothetical protein 1667660 2779833 pc1389 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008388.1 1666578 D 264201 CDS YP_008389.1 46447024 2779834 1667910..1668296 1 NC_005861.1 hypothetical protein 1668296 2779834 pc1390 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008389.1 1667910 D 264201 CDS YP_008390.1 46447025 2781394 1668394..1670223 1 NC_005861.1 hypothetical protein 1670223 2781394 pc1391 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008390.1 1668394 D 264201 CDS YP_008391.1 46447026 2781395 1670270..1670512 1 NC_005861.1 hypothetical protein 1670512 2781395 pc1392 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008391.1 1670270 D 264201 CDS YP_008392.1 46447027 2781396 1670600..1671064 1 NC_005861.1 hypothetical protein 1671064 2781396 pc1393 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008392.1 1670600 D 264201 CDS YP_008393.1 46447028 2781164 1671073..1671756 1 NC_005861.1 similar to UDPgalactose-glucose galactosyltransferase; udpgalactose-glucose galactosyltransferase 1671756 2781164 pc1394 Candidatus Protochlamydia amoebophila UWE25 udpgalactose-glucose galactosyltransferase YP_008393.1 1671073 D 264201 CDS YP_008394.1 46447029 2781165 1672066..1672344 1 NC_005861.1 hypothetical protein 1672344 2781165 pc1395 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008394.1 1672066 D 264201 CDS YP_008395.1 46447030 2781166 1672490..1673341 1 NC_005861.1 hypothetical protein 1673341 2781166 pc1396 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008395.1 1672490 D 264201 CDS YP_008396.1 46447031 2779419 1673399..1674763 1 NC_005861.1 strongly similar to type III secretion pathway protein sctN; type III secretion system ATPase 1674763 sctN 2779419 sctN Candidatus Protochlamydia amoebophila UWE25 type III secretion system ATPase YP_008396.1 1673399 D 264201 CDS YP_008397.1 46447032 2781167 1674777..1675274 1 NC_005861.1 hypothetical protein 1675274 2781167 pc1398 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008397.1 1674777 D 264201 CDS YP_008398.1 46447033 2781113 1675345..1676337 1 NC_005861.1 hypothetical protein 1676337 2781113 pc1399 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008398.1 1675345 D 264201 CDS YP_008399.1 46447034 2780666 1676642..1677979 1 NC_005861.1 similar to flagellar motor switch protein (= type III secretion translocase SctQ); type III secretion system protein 1677979 sctQ 2780666 sctQ Candidatus Protochlamydia amoebophila UWE25 type III secretion system protein YP_008399.1 1676642 D 264201 CDS YP_008400.1 46447035 2780533 1678055..1679644 1 NC_005861.1 similar to serine/threonine protein kinase; serine/threonine protein kinase 1679644 pkn 2780533 pkn Candidatus Protochlamydia amoebophila UWE25 serine/threonine protein kinase YP_008400.1 1678055 D 264201 CDS YP_008401.1 46447036 2781114 1679924..1680400 1 NC_005861.1 hypothetical protein 1680400 2781114 pc1402 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008401.1 1679924 D 264201 CDS YP_008402.1 46447037 2781115 complement(1681162..1681563) 1 NC_005861.1 hypothetical protein 1681563 2781115 pc1403 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008402.1 1681162 R 264201 CDS YP_008403.1 46447038 2781233 complement(1681569..1682441) 1 NC_005861.1 hypothetical protein 1682441 2781233 pc1404 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008403.1 1681569 R 264201 CDS YP_008404.1 46447039 2781234 complement(1682779..1683099) 1 NC_005861.1 hypothetical protein 1683099 2781234 pc1405 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008404.1 1682779 R 264201 CDS YP_008405.1 46447040 2781235 1683529..1683825 1 NC_005861.1 hypothetical protein 1683825 2781235 pc1406 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008405.1 1683529 D 264201 CDS YP_008406.1 46447041 2781158 1683880..1684227 1 NC_005861.1 hypothetical protein 1684227 2781158 pc1407 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008406.1 1683880 D 264201 CDS YP_008407.1 46447042 2781159 1684227..1684778 1 NC_005861.1 hypothetical protein 1684778 2781159 pc1408 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008407.1 1684227 D 264201 CDS YP_008408.1 46447043 2781160 complement(1684827..1685087) 1 NC_005861.1 hypothetical protein 1685087 2781160 pc1409 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008408.1 1684827 R 264201 CDS YP_008409.1 46447044 2779874 complement(1685329..1686447) 1 NC_005861.1 hypothetical protein 1686447 2779874 pc1410 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008409.1 1685329 R 264201 CDS YP_008410.1 46447045 2779875 1686882..1687082 1 NC_005861.1 hypothetical protein 1687082 2779875 pc1411 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008410.1 1686882 D 264201 CDS YP_008411.1 46447046 2779876 1687470..1687673 1 NC_005861.1 hypothetical protein 1687673 2779876 pc1412 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008411.1 1687470 D 264201 CDS YP_008412.1 46447047 2779519 complement(1687923..1688222) 1 NC_005861.1 hypothetical protein 1688222 2779519 pc1413 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008412.1 1687923 R 264201 CDS YP_008413.1 46447048 2779520 complement(1688209..1688523) 1 NC_005861.1 hypothetical protein 1688523 2779520 pc1414 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008413.1 1688209 R 264201 CDS YP_008414.1 46447049 2779521 1689469..1690965 1 NC_005861.1 hypothetical protein 1690965 2779521 pc1415 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008414.1 1689469 D 264201 CDS YP_008415.1 46447050 2779892 1691344..1691529 1 NC_005861.1 hypothetical protein 1691529 2779892 pc1416 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008415.1 1691344 D 264201 CDS YP_008416.1 46447051 2779893 1691799..1693271 1 NC_005861.1 hypothetical protein 1693271 2779893 pc1417 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008416.1 1691799 D 264201 CDS YP_008417.1 46447052 2779894 1693840..1694943 1 NC_005861.1 hypothetical protein 1694943 2779894 pc1418 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008417.1 1693840 D 264201 CDS YP_008418.1 46447053 2779895 1695418..1696245 1 NC_005861.1 hypothetical protein 1696245 2779895 pc1419 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008418.1 1695418 D 264201 CDS YP_008419.1 46447054 2779612 complement(1696410..1696814) 1 NC_005861.1 hypothetical protein 1696814 2779612 pc1420 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008419.1 1696410 R 264201 CDS YP_008420.1 46447055 2779613 1697418..1697735 1 NC_005861.1 hypothetical protein 1697735 2779613 pc1421 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008420.1 1697418 D 264201 CDS YP_008421.1 46447056 2779614 1697757..1698062 1 NC_005861.1 hypothetical protein 1698062 2779614 pc1422 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008421.1 1697757 D 264201 CDS YP_008422.1 46447057 2780488 1698071..1698640 1 NC_005861.1 similar to F pilus assembly protein traE; F pilus assembly protein traE 1698640 traE 2780488 traE Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traE YP_008422.1 1698071 D 264201 CDS YP_008423.1 46447058 2780830 1698641..1699333 1 NC_005861.1 hypothetical protein 1699333 2780830 pc1424 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008423.1 1698641 D 264201 CDS YP_008424.1 46447059 2779681 1699404..1700630 1 NC_005861.1 similar to F pilus assembly protein traB; F pilus assembly protein traB 1700630 traB 2779681 traB Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traB YP_008424.1 1699404 D 264201 CDS YP_008425.1 46447060 2780831 complement(1700887..1701381) 1 NC_005861.1 hypothetical protein 1701381 2780831 pc1426 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008425.1 1700887 R 264201 CDS YP_008426.1 46447061 2780832 complement(1701456..1701896) 1 NC_005861.1 hypothetical protein 1701896 2780832 pc1427 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008426.1 1701456 R 264201 CDS YP_008427.1 46447062 2779456 1701958..1702431 1 NC_005861.1 hypothetical protein 1702431 2779456 pc1428 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008427.1 1701958 D 264201 CDS YP_008428.1 46447063 2779457 1702424..1702798 1 NC_005861.1 hypothetical protein 1702798 2779457 pc1429 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008428.1 1702424 D 264201 CDS YP_008429.1 46447064 2779682 1702800..1705286 1 NC_005861.1 similar to inner-membrane protein traC; inner-membrane protein traC 1705286 traC 2779682 traC Candidatus Protochlamydia amoebophila UWE25 inner-membrane protein traC YP_008429.1 1702800 D 264201 CDS YP_008430.1 46447065 2780489 1705274..1705756 1 NC_005861.1 similar to F pilus assembly protein traF; F pilus assembly protein traF 1705756 traF 2780489 traF Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traF YP_008430.1 1705274 D 264201 CDS YP_008431.1 46447066 2780207 1705741..1706373 1 NC_005861.1 similar to F pilus assembly protein traW; F pilus assembly protein traW 1706373 traW 2780207 traW Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traW YP_008431.1 1705741 D 264201 CDS YP_008432.1 46447067 2780208 1706382..1706978 1 NC_005861.1 similar to F pilus assembly protein trbC; F pilus assembly protein trbC 1706978 trbC 2780208 trbC Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein trbC YP_008432.1 1706382 D 264201 CDS YP_008433.1 46447068 2779976 1707047..1707982 1 NC_005861.1 similar to F pilus assembly protein traU; F pilus assembly protein traU 1707982 traU 2779976 traU Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traU YP_008433.1 1707047 D 264201 CDS YP_008434.1 46447069 2779458 1707925..1708692 1 NC_005861.1 hypothetical protein 1708692 2779458 pc1435 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008434.1 1707925 D 264201 CDS YP_008435.1 46447070 2779661 1708784..1708969 1 NC_005861.1 hypothetical protein 1708969 2779661 pc1436 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008435.1 1708784 D 264201 CDS YP_008436.1 46447071 2779975 1709083..1709637 1 NC_005861.1 similar to conjugative transfer protein traN precursor; conjugative transfer protein traN 1709637 traN 2779975 traN Candidatus Protochlamydia amoebophila UWE25 conjugative transfer protein traN YP_008436.1 1709083 D 264201 CDS YP_008437.1 46447072 2780490 1709634..1710425 1 NC_005861.1 similar to F pilus assembly protein traF; F pilus assembly protein traF 1710425 traF 2780490 traF Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traF YP_008437.1 1709634 D 264201 CDS YP_008438.1 46447073 2779974 1710422..1711780 1 NC_005861.1 similar to F pilus assembly protein traH; F pilus assembly protein traH 1711780 traH 2779974 traH Candidatus Protochlamydia amoebophila UWE25 F pilus assembly protein traH YP_008438.1 1710422 D 264201 CDS YP_008439.1 46447074 2779973 1711791..1714574 1 NC_005861.1 similar to conjugative transfer protein traG; conjugative transfer protein traG 1714574 traG 2779973 traG Candidatus Protochlamydia amoebophila UWE25 conjugative transfer protein traG YP_008439.1 1711791 D 264201 CDS YP_008440.1 46447075 2779683 1714571..1716241 1 NC_005861.1 similar to conjugative transfer protein traD; conjugative transfer protein traD 1716241 traD 2779683 traD Candidatus Protochlamydia amoebophila UWE25 conjugative transfer protein traD YP_008440.1 1714571 D 264201 CDS YP_008441.1 46447076 2779662 1716302..1716655 1 NC_005861.1 hypothetical protein 1716655 2779662 pc1442 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008441.1 1716302 D 264201 CDS YP_008442.1 46447077 2779663 1716648..1717004 1 NC_005861.1 hypothetical protein 1717004 2779663 pc1443 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008442.1 1716648 D 264201 CDS YP_008443.1 46447078 2780288 1717137..1717400 1 NC_005861.1 hypothetical protein 1717400 2780288 pc1444 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008443.1 1717137 D 264201 CDS YP_008444.1 46447079 2780289 1717579..1717860 1 NC_005861.1 hypothetical protein 1717860 2780289 pc1445 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008444.1 1717579 D 264201 CDS YP_008445.1 46447080 2780290 1718022..1718702 1 NC_005861.1 hypothetical protein 1718702 2780290 pc1446 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008445.1 1718022 D 264201 CDS YP_008446.1 46447081 2779930 1718994..1719326 1 NC_005861.1 hypothetical protein 1719326 2779930 pc1447 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008446.1 1718994 D 264201 CDS YP_008447.1 46447082 2779931 1719350..1720123 1 NC_005861.1 hypothetical protein 1720123 2779931 pc1448 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008447.1 1719350 D 264201 CDS YP_008448.1 46447083 2779932 complement(1720498..1722591) 1 NC_005861.1 hypothetical protein 1722591 2779932 pc1449 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008448.1 1720498 R 264201 CDS YP_008449.1 46447084 2779933 complement(1722785..1722979) 1 NC_005861.1 hypothetical protein 1722979 2779933 pc1450 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008449.1 1722785 R 264201 CDS YP_008450.1 46447085 2781386 complement(1723169..1723504) 1 NC_005861.1 hypothetical protein 1723504 2781386 pc1451 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008450.1 1723169 R 264201 CDS YP_008451.1 46447086 2781387 1723987..1725021 1 NC_005861.1 hypothetical protein 1725021 2781387 pc1452 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008451.1 1723987 D 264201 CDS YP_008452.1 46447087 2781388 1725568..1725891 1 NC_005861.1 hypothetical protein 1725891 2781388 pc1453 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008452.1 1725568 D 264201 CDS YP_008453.1 46447088 2780054 1726124..1726315 1 NC_005861.1 hypothetical protein 1726315 2780054 pc1454 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008453.1 1726124 D 264201 CDS YP_008454.1 46447089 2780055 complement(1726283..1731883) 1 NC_005861.1 hypothetical protein 1731883 2780055 pc1455 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008454.1 1726283 R 264201 CDS YP_008455.1 46447090 2781119 complement(1732622..1732999) 1 NC_005861.1 strongly similar to doc (death on cure) protein of bacteriophage P1; doc (death on cure) protein of bacteriophage P1 1732999 doc 2781119 doc Candidatus Protochlamydia amoebophila UWE25 doc (death on cure) protein of bacteriophage P1 YP_008455.1 1732622 R 264201 CDS YP_008456.1 46447091 2780056 complement(1732996..1733226) 1 NC_005861.1 hypothetical protein 1733226 2780056 pc1457 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008456.1 1732996 R 264201 CDS YP_008457.1 46447092 2781241 complement(1733583..1733768) 1 NC_005861.1 hypothetical protein 1733768 2781241 pc1458 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008457.1 1733583 R 264201 CDS YP_008458.1 46447093 2781242 complement(1734037..1734762) 1 NC_005861.1 hypothetical protein 1734762 2781242 pc1459 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008458.1 1734037 R 264201 CDS YP_008459.1 46447094 2781243 complement(1734915..1735115) 1 NC_005861.1 hypothetical protein 1735115 2781243 pc1460 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008459.1 1734915 R 264201 CDS YP_008460.1 46447095 2781244 complement(1735745..1736065) 1 NC_005861.1 hypothetical protein 1736065 2781244 pc1461 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008460.1 1735745 R 264201 CDS YP_008461.1 46447096 2781372 1736478..1739090 1 NC_005861.1 hypothetical protein 1739090 2781372 pc1462 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008461.1 1736478 D 264201 CDS YP_008462.1 46447097 2781373 complement(1739087..1739275) 1 NC_005861.1 hypothetical protein 1739275 2781373 pc1463 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008462.1 1739087 R 264201 CDS YP_008463.1 46447098 2779920 1739816..1740037 1 NC_005861.1 hypothetical protein 1740037 2779920 pc1464 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008463.1 1739816 D 264201 CDS YP_008464.1 46447099 2779921 complement(1740371..1741198) 1 NC_005861.1 hypothetical protein 1741198 2779921 pc1465 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008464.1 1740371 R 264201 CDS YP_008465.1 46447100 2779922 complement(1741400..1742194) 1 NC_005861.1 hypothetical protein 1742194 2779922 pc1466 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008465.1 1741400 R 264201 CDS YP_008466.1 46447101 2781202 complement(1742079..1744181) 1 NC_005861.1 hypothetical protein 1744181 2781202 pc1467 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008466.1 1742079 R 264201 CDS YP_008467.1 46447102 2781203 1744634..1745023 1 NC_005861.1 hypothetical protein 1745023 2781203 pc1468 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008467.1 1744634 D 264201 CDS YP_008468.1 46447103 2780328 1745398..1745955 1 NC_005861.1 strongly similar to resolvase; resolvase 1745955 tnpR 2780328 tnpR Candidatus Protochlamydia amoebophila UWE25 resolvase YP_008468.1 1745398 D 264201 CDS YP_008469.1 46447104 2780387 1745807..1746337 1 NC_005861.1 strongly similar to transposase, partial length; transposase, partial length 1746337 tnpA 2780387 tnpA Candidatus Protochlamydia amoebophila UWE25 transposase, partial length YP_008469.1 1745807 D 264201 CDS YP_008470.1 46447105 2780327 1746372..1746692 1 NC_005861.1 strongly similar to transposase, partial length; transposase, partial length 1746692 tnpA 2780327 tnpA Candidatus Protochlamydia amoebophila UWE25 transposase, partial length YP_008470.1 1746372 D 264201 CDS YP_008471.1 46447106 2781204 1746893..1747138 1 NC_005861.1 hypothetical protein 1747138 2781204 pc1472 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008471.1 1746893 D 264201 CDS YP_008472.1 46447107 2781120 1747135..1747512 1 NC_005861.1 strongly similar to doc (death on cure) protein of bacteriophage P1; doc (death on cure) protein of bacteriophage P1 1747512 doc 2781120 doc Candidatus Protochlamydia amoebophila UWE25 doc (death on cure) protein of bacteriophage P1 YP_008472.1 1747135 D 264201 CDS YP_008473.1 46447108 2781205 1747618..1747809 1 NC_005861.1 hypothetical protein 1747809 2781205 pc1474 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008473.1 1747618 D 264201 CDS YP_008474.1 46447109 2779610 1748552..1751413 1 NC_005861.1 similar to component D of type II secretion pathway; component D of type II secretion pathway 1751413 gspD 2779610 gspD Candidatus Protochlamydia amoebophila UWE25 component D of type II secretion pathway YP_008474.1 1748552 D 264201 CDS YP_008475.1 46447110 2781199 1751410..1752378 1 NC_005861.1 hypothetical protein 1752378 2781199 pc1476 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008475.1 1751410 D 264201 CDS YP_008476.1 46447111 2781200 1752380..1752760 1 NC_005861.1 hypothetical protein 1752760 2781200 pc1477 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008476.1 1752380 D 264201 CDS YP_008477.1 46447112 2779692 complement(1753302..1755224) 1 NC_005861.1 similar to sulfate transport protein; sulfate transport protein 1755224 hvsT1 2779692 hvsT1 Candidatus Protochlamydia amoebophila UWE25 sulfate transport protein YP_008477.1 1753302 R 264201 CDS YP_008478.1 46447113 2781201 1755396..1755593 1 NC_005861.1 hypothetical protein 1755593 2781201 pc1479 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008478.1 1755396 D 264201 CDS YP_008479.1 46447114 2780865 1755590..1757053 1 NC_005861.1 hypothetical protein 1757053 2780865 pc1480 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008479.1 1755590 D 264201 CDS YP_008480.1 46447115 2780866 1757066..1757980 1 NC_005861.1 hypothetical protein 1757980 2780866 pc1481 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008480.1 1757066 D 264201 CDS YP_008481.1 46447116 2780867 1757981..1758181 1 NC_005861.1 hypothetical protein 1758181 2780867 pc1482 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008481.1 1757981 D 264201 CDS YP_008482.1 46447117 2781337 1758163..1759191 1 NC_005861.1 hypothetical protein 1759191 2781337 pc1483 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008482.1 1758163 D 264201 CDS YP_008483.1 46447118 2781338 complement(1759218..1762988) 1 NC_005861.1 hypothetical protein 1762988 2781338 pc1484 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008483.1 1759218 R 264201 CDS YP_008484.1 46447119 2779829 complement(1763179..1766016) 1 NC_005861.1 similar to heat shock protein 70, dnaK; molecular chaperone DnaK 1766016 dnaK 2779829 dnaK Candidatus Protochlamydia amoebophila UWE25 molecular chaperone DnaK YP_008484.1 1763179 R 264201 CDS YP_008485.1 46447120 2781143 complement(1766062..1767174) 1 NC_005861.1 strongly similar to alanine dehydrogenase; alanine dehydrogenase 1767174 ald 2781143 ald Candidatus Protochlamydia amoebophila UWE25 alanine dehydrogenase YP_008485.1 1766062 R 264201 CDS YP_008486.1 46447121 2781208 complement(1767206..1770745) 1 NC_005861.1 similar to chromosome segregation SMC protein; chromosome segregation SMC protein 1770745 smc 2781208 smc Candidatus Protochlamydia amoebophila UWE25 chromosome segregation SMC protein YP_008486.1 1767206 R 264201 CDS YP_008487.2 161611303 2780035 1770921..1772201 1 NC_005861.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1772201 serS 2780035 serS Candidatus Protochlamydia amoebophila UWE25 seryl-tRNA synthetase YP_008487.2 1770921 D 264201 CDS YP_008488.1 46447123 2781339 1772902..1773855 1 NC_005861.1 hypothetical protein 1773855 2781339 pc1489 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008488.1 1772902 D 264201 CDS YP_008489.1 46447124 2781331 1773972..1775276 1 NC_005861.1 catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 1775276 2781331 pc1490 Candidatus Protochlamydia amoebophila UWE25 aminopeptidase 2 YP_008489.1 1773972 D 264201 CDS YP_008490.1 46447125 2781332 complement(1775335..1776555) 1 NC_005861.1 hypothetical protein 1776555 2781332 pc1491 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008490.1 1775335 R 264201 CDS YP_008491.1 46447126 2781333 1777019..1777897 1 NC_005861.1 hypothetical protein 1777897 2781333 pc1492 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008491.1 1777019 D 264201 CDS YP_008492.1 46447127 2781327 1778088..1778297 1 NC_005861.1 hypothetical protein 1778297 2781327 pc1493 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008492.1 1778088 D 264201 CDS YP_008493.1 46447128 2781328 1778322..1778507 1 NC_005861.1 hypothetical protein 1778507 2781328 pc1494 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008493.1 1778322 D 264201 CDS YP_008494.1 46447129 2781329 1778935..1780614 1 NC_005861.1 hypothetical protein 1780614 2781329 pc1495 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008494.1 1778935 D 264201 CDS YP_008495.1 46447130 2780944 1781194..1784268 1 NC_005861.1 similar to eucaryotic NAD-specific glutamate dehydrogenase; eucaryotic NAD-specific glutamate dehydrogenase 1784268 gdhB 2780944 gdhB Candidatus Protochlamydia amoebophila UWE25 eucaryotic NAD-specific glutamate dehydrogenase YP_008495.1 1781194 D 264201 CDS YP_008496.1 46447131 2780652 1784377..1785534 1 NC_005861.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 1785534 hrcA 2780652 hrcA Candidatus Protochlamydia amoebophila UWE25 heat-inducible transcription repressor YP_008496.1 1784377 D 264201 CDS YP_008497.1 46447132 2780420 1785572..1786207 1 NC_005861.1 strongly similar to heat shock protein GrpE; heat shock protein GrpE 1786207 grpE 2780420 grpE Candidatus Protochlamydia amoebophila UWE25 heat shock protein GrpE YP_008497.1 1785572 D 264201 CDS YP_008498.1 46447133 2780431 1786223..1788187 1 NC_005861.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1788187 dnaK 2780431 dnaK Candidatus Protochlamydia amoebophila UWE25 molecular chaperone DnaK YP_008498.1 1786223 D 264201 CDS YP_008499.1 46447134 2781330 1788344..1789045 1 NC_005861.1 hypothetical protein 1789045 2781330 pc1500 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008499.1 1788344 D 264201 CDS YP_008500.1 46447135 2779734 complement(1789140..1789943) 1 NC_005861.1 hypothetical protein 1789943 2779734 pc1501 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008500.1 1789140 R 264201 CDS YP_008501.1 46447136 2779868 1790142..1791725 1 NC_005861.1 strongly similar to oligo/dipeptide-binding protein oppA; oligo/dipeptide-binding protein oppA 1791725 oppA 2779868 oppA Candidatus Protochlamydia amoebophila UWE25 oligo/dipeptide-binding protein oppA YP_008501.1 1790142 D 264201 CDS YP_008502.1 46447137 2779958 1791734..1792669 1 NC_005861.1 strongly similar to oligo/dipeptide ABC transporter (permease) oppB; oligo/dipeptide ABC transporter permease oppB 1792669 oppB 2779958 oppB Candidatus Protochlamydia amoebophila UWE25 oligo/dipeptide ABC transporter permease oppB YP_008502.1 1791734 D 264201 CDS YP_008503.1 46447138 2779747 1792666..1793568 1 NC_005861.1 strongly similar to oligo/dipeptide ABC transporter (permease) oppC; oligo/dipeptide ABC transporter permease oppC 1793568 oppC 2779747 oppC Candidatus Protochlamydia amoebophila UWE25 oligo/dipeptide ABC transporter permease oppC YP_008503.1 1792666 D 264201 CDS YP_008504.1 46447139 2779749 1793577..1794563 1 NC_005861.1 strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppD; oligo/dipeptide ABC transporter, ATP-binding protein oppD 1794563 oppD 2779749 oppD Candidatus Protochlamydia amoebophila UWE25 oligo/dipeptide ABC transporter, ATP-binding protein oppD YP_008504.1 1793577 D 264201 CDS YP_008505.1 46447140 2780923 1794553..1795497 1 NC_005861.1 strongly similar to oligo/dipeptide abc transporter, ATP-binding protein oppF; oligo/dipeptide ABC transporter, ATP-binding protein oppF 1795497 dppF 2780923 dppF Candidatus Protochlamydia amoebophila UWE25 oligo/dipeptide ABC transporter, ATP-binding protein oppF YP_008505.1 1794553 D 264201 CDS YP_008506.1 46447141 2779735 1796322..1798193 1 NC_005861.1 hypothetical protein 1798193 2779735 pc1507 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008506.1 1796322 D 264201 CDS YP_008507.1 46447142 2779736 1798603..1800576 1 NC_005861.1 hypothetical protein 1800576 2779736 pc1508 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008507.1 1798603 D 264201 CDS YP_008508.1 46447143 2780776 1800863..1801159 1 NC_005861.1 hypothetical protein 1801159 2780776 pc1509 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008508.1 1800863 D 264201 CDS YP_008509.1 46447144 2780777 1801892..1803904 1 NC_005861.1 hypothetical protein 1803904 2780777 pc1510 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008509.1 1801892 D 264201 CDS YP_008510.1 46447145 2780283 complement(1805005..1807548) 1 NC_005861.1 strongly similar to endopeptidase ATP-binding chain clpC; endopeptidase ATP-binding chain clpC 1807548 clpC 2780283 clpC Candidatus Protochlamydia amoebophila UWE25 endopeptidase ATP-binding chain clpC YP_008510.1 1805005 R 264201 CDS YP_008511.1 46447146 2781263 complement(1807876..1809249) 1 NC_005861.1 similar to protoporphyrinogen oxidase; protoporphyrinogen oxidase 1809249 hemG 2781263 hemG Candidatus Protochlamydia amoebophila UWE25 protoporphyrinogen oxidase YP_008511.1 1807876 R 264201 CDS YP_008512.1 46447147 2781261 complement(1809242..1810336) 1 NC_005861.1 strongly similar to uroporphyrinogen decarboxylase; uroporphyrinogen decarboxylase 1810336 hemE 2781261 hemE Candidatus Protochlamydia amoebophila UWE25 uroporphyrinogen decarboxylase YP_008512.1 1809242 R 264201 CDS YP_008513.1 46447148 2780385 complement(1810308..1812341) 1 NC_005861.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1812341 tkt 2780385 tkt Candidatus Protochlamydia amoebophila UWE25 transketolase YP_008513.1 1810308 R 264201 CDS YP_008514.1 46447149 2780778 1812939..1813250 1 NC_005861.1 hypothetical protein 1813250 2780778 pc1515 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008514.1 1812939 D 264201 CDS YP_008515.1 46447150 2780559 1814064..1816448 1 NC_005861.1 hypothetical protein 1816448 2780559 pc1516 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008515.1 1814064 D 264201 CDS YP_008516.1 46447151 2780560 1816476..1817690 1 NC_005861.1 hypothetical protein 1817690 2780560 pc1517 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008516.1 1816476 D 264201 CDS YP_008517.1 46447152 2780561 1817726..1818958 1 NC_005861.1 hypothetical protein 1818958 2780561 pc1518 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008517.1 1817726 D 264201 CDS YP_008518.1 46447153 2781142 1820003..1822639 1 NC_005861.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1822639 alaS 2781142 alaS Candidatus Protochlamydia amoebophila UWE25 alanyl-tRNA synthetase YP_008518.1 1820003 D 264201 CDS YP_008519.1 46447154 2779728 complement(1822792..1823523) 1 NC_005861.1 similar to periplasmic immunogenic protein; periplasmic immunogenic protein 1823523 2779728 pc1520 Candidatus Protochlamydia amoebophila UWE25 periplasmic immunogenic protein YP_008519.1 1822792 R 264201 CDS YP_008520.1 46447155 2780597 1823883..1827188 1 NC_005861.1 strongly similar to transcription-repair coupling factor mfd; transcription-repair coupling factor 1827188 mfd 2780597 mfd Candidatus Protochlamydia amoebophila UWE25 transcription-repair coupling factor YP_008520.1 1823883 D 264201 CDS YP_008521.1 46447156 2779729 complement(1827160..1827357) 1 NC_005861.1 hypothetical protein 1827357 2779729 pc1522 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008521.1 1827160 R 264201 CDS YP_008522.1 46447157 2779730 complement(1827501..1827752) 1 NC_005861.1 hypothetical protein 1827752 2779730 pc1523 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008522.1 1827501 R 264201 CDS YP_008523.1 46447158 2780146 complement(1828303..1829448) 1 NC_005861.1 hypothetical protein 1829448 2780146 pc1524 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008523.1 1828303 R 264201 CDS YP_008524.1 46447159 2781277 1829638..1830177 1 NC_005861.1 similar to regulatory protein lcrH and chaperone sycD; regulatory protein lcrH and chaperone sycD 1830177 lcrH 2781277 lcrH Candidatus Protochlamydia amoebophila UWE25 regulatory protein lcrH and chaperone sycD YP_008524.1 1829638 D 264201 CDS YP_008525.1 46447160 2780147 1830167..1831660 1 NC_005861.1 hypothetical protein 1831660 2780147 pc1526 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008525.1 1830167 D 264201 CDS YP_008526.1 46447161 2780975 complement(1831740..1832585) 1 NC_005861.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1832585 amn 2780975 amn Candidatus Protochlamydia amoebophila UWE25 AMP nucleosidase YP_008526.1 1831740 R 264201 CDS YP_008527.1 46447162 2780148 complement(1832609..1832851) 1 NC_005861.1 hypothetical protein 1832851 2780148 pc1528 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008527.1 1832609 R 264201 CDS YP_008528.1 46447163 2781178 1833395..1833967 1 NC_005861.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1833967 efp 2781178 efp Candidatus Protochlamydia amoebophila UWE25 elongation factor P YP_008528.1 1833395 D 264201 CDS YP_008529.1 46447164 2780648 1834013..1834915 1 NC_005861.1 similar to lysyl-tRNA synthetase; lysyl-tRNA synthetase 1834915 lysS 2780648 lysS Candidatus Protochlamydia amoebophila UWE25 lysyl-tRNA synthetase YP_008529.1 1834013 D 264201 CDS YP_008530.1 46447165 2780149 complement(1834972..1835433) 1 NC_005861.1 hypothetical protein 1835433 2780149 pc1531 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008530.1 1834972 R 264201 CDS YP_008531.1 46447166 2779889 1835487..1835717 1 NC_005861.1 hypothetical protein 1835717 2779889 pc1532 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008531.1 1835487 D 264201 CDS YP_008532.1 46447167 2779700 complement(1835745..1837142) 1 NC_005861.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1837142 nqrF 2779700 nqrF Candidatus Protochlamydia amoebophila UWE25 Na(+)-translocating NADH-quinone reductase subunit F YP_008532.1 1835745 R 264201 CDS YP_008533.1 46447168 2780267 1837384..1837773 1 NC_005861.1 strongly similar to yabJ; hypothetical protein 1837773 yabJ 2780267 yabJ Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008533.1 1837384 D 264201 CDS YP_008534.1 46447169 2779690 1837801..1839648 1 NC_005861.1 molecular chaperone; heat shock protein 90 1839648 htpG 2779690 htpG Candidatus Protochlamydia amoebophila UWE25 heat shock protein 90 YP_008534.1 1837801 D 264201 CDS YP_008535.1 46447170 2779890 1839659..1841023 1 NC_005861.1 hypothetical protein 1841023 2779890 pc1536 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008535.1 1839659 D 264201 CDS YP_008536.1 46447171 2779891 1841167..1841976 1 NC_005861.1 hypothetical protein 1841976 2779891 pc1537 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008536.1 1841167 D 264201 CDS YP_008537.1 46447172 2780535 1842163..1842420 1 NC_005861.1 hypothetical protein 1842420 2780535 pc1538 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008537.1 1842163 D 264201 CDS YP_008538.1 46447173 2780536 1842727..1842951 1 NC_005861.1 hypothetical protein 1842951 2780536 pc1539 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008538.1 1842727 D 264201 CDS YP_008539.1 46447174 2780537 1843181..1845751 1 NC_005861.1 hypothetical protein 1845751 2780537 pc1540 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008539.1 1843181 D 264201 CDS YP_008540.1 46447175 2780038 1845760..1846290 1 NC_005861.1 hypothetical protein 1846290 2780038 pc1541 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008540.1 1845760 D 264201 CDS YP_008541.1 46447176 2780039 1846620..1848833 1 NC_005861.1 hypothetical protein 1848833 2780039 pc1542 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008541.1 1846620 D 264201 CDS YP_008542.1 46447177 2781413 complement(1848958..1849356) 1 NC_005861.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1849356 yajC 2781413 yajC Candidatus Protochlamydia amoebophila UWE25 preprotein translocase subunit YajC YP_008542.1 1848958 R 264201 CDS YP_008543.1 46447178 2781040 complement(1849503..1850831) 1 NC_005861.1 similar to rRNA methyltransferse; rRNA methyltransferse 1850831 ygcA 2781040 ygcA Candidatus Protochlamydia amoebophila UWE25 rRNA methyltransferse YP_008543.1 1849503 R 264201 CDS YP_008544.1 46447179 2780807 complement(1851015..1851410) 1 NC_005861.1 strongly similar to histone H1-like protein; histone H1-like protein 1851410 hctA 2780807 hctA Candidatus Protochlamydia amoebophila UWE25 histone H1-like protein YP_008544.1 1851015 R 264201 CDS YP_008545.1 46447180 2780040 1851903..1854593 1 NC_005861.1 hypothetical protein 1854593 2780040 pc1546 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008545.1 1851903 D 264201 CDS YP_008546.1 46447181 2779939 1854520..1855245 1 NC_005861.1 similar to biopolymer transport protein exbB; biopolymer transport protein exbB 1855245 exbB 2779939 exbB Candidatus Protochlamydia amoebophila UWE25 biopolymer transport protein exbB YP_008546.1 1854520 D 264201 CDS YP_008547.1 46447182 2779940 1855245..1855685 1 NC_005861.1 similar to biopolymer transport protein exbD; biopolymer transport protein exbD 1855685 exbD 2779940 exbD Candidatus Protochlamydia amoebophila UWE25 biopolymer transport protein exbD YP_008547.1 1855245 D 264201 CDS YP_008548.1 46447183 2780859 1855687..1856391 1 NC_005861.1 hypothetical protein 1856391 2780859 pc1549 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008548.1 1855687 D 264201 CDS YP_008549.1 46447184 2780860 1856404..1856652 1 NC_005861.1 hypothetical protein 1856652 2780860 pc1550 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008549.1 1856404 D 264201 CDS YP_008550.1 46447185 2780861 1856807..1857094 1 NC_005861.1 hypothetical protein 1857094 2780861 pc1551 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008550.1 1856807 D 264201 CDS YP_008551.1 46447186 2781022 complement(1857261..1857554) 1 NC_005861.1 hypothetical protein 1857554 2781022 pc1552 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008551.1 1857261 R 264201 CDS YP_008552.1 46447187 2781023 1859673..1859873 1 NC_005861.1 hypothetical protein 1859873 2781023 pc1553 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008552.1 1859673 D 264201 CDS YP_008553.1 46447188 2781024 1860232..1861068 1 NC_005861.1 hypothetical protein 1861068 2781024 pc1554 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008553.1 1860232 D 264201 CDS YP_008554.1 46447189 2781025 1861286..1861846 1 NC_005861.1 hypothetical protein 1861846 2781025 pc1555 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008554.1 1861286 D 264201 CDS YP_008555.1 46447190 2781010 complement(1861968..1864838) 1 NC_005861.1 hypothetical protein 1864838 2781010 pc1556 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008555.1 1861968 R 264201 CDS YP_008556.1 46447191 2781264 complement(1865025..1866068) 1 NC_005861.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1866068 hemH 2781264 hemH Candidatus Protochlamydia amoebophila UWE25 ferrochelatase YP_008556.1 1865025 R 264201 CDS YP_008557.1 46447192 2780282 complement(1866089..1868032) 1 NC_005861.1 similar to heat shock protein ClpB; heat shock protein ClpB 1868032 clpB 2780282 clpB Candidatus Protochlamydia amoebophila UWE25 heat shock protein ClpB YP_008557.1 1866089 R 264201 CDS YP_008558.1 46447193 2780316 complement(1868321..1869868) 1 NC_005861.1 similar to ATP-dependent RNA helicase; ATP-dependent RNA helicase 1869868 deaD 2780316 deaD Candidatus Protochlamydia amoebophila UWE25 ATP-dependent RNA helicase YP_008558.1 1868321 R 264201 CDS YP_008559.1 46447194 2781011 complement(1870645..1870920) 1 NC_005861.1 hypothetical protein 1870920 2781011 pc1560 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008559.1 1870645 R 264201 CDS YP_008560.1 46447195 2781012 1871435..1871770 1 NC_005861.1 hypothetical protein 1871770 2781012 pc1561 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008560.1 1871435 D 264201 CDS YP_008561.1 46447196 2780368 complement(1872305..1872637) 1 NC_005861.1 hypothetical protein 1872637 2780368 pc1562 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008561.1 1872305 R 264201 CDS YP_008562.1 46447197 2780369 complement(1872634..1873776) 1 NC_005861.1 hypothetical protein 1873776 2780369 pc1563 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008562.1 1872634 R 264201 CDS YP_008563.1 46447198 2780370 complement(1874074..1874259) 1 NC_005861.1 hypothetical protein 1874259 2780370 pc1564 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008563.1 1874074 R 264201 CDS YP_008564.1 46447199 2780313 1874808..1878239 1 NC_005861.1 hypothetical protein 1878239 2780313 pc1565 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008564.1 1874808 D 264201 CDS YP_008565.1 46447200 2780314 complement(1878743..1879477) 1 NC_005861.1 hypothetical protein 1879477 2780314 pc1566 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008565.1 1878743 R 264201 CDS YP_008566.1 46447201 2780315 complement(1879467..1880144) 1 NC_005861.1 hypothetical protein 1880144 2780315 pc1567 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008566.1 1879467 R 264201 CDS YP_008567.1 46447202 2779731 complement(1880123..1881916) 1 NC_005861.1 hypothetical protein 1881916 2779731 pc1568 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008567.1 1880123 R 264201 CDS YP_008568.1 46447203 2780953 complement(1882035..1882607) 1 NC_005861.1 similar to ribosomal-protein-serine acetyltransferase; ribosomal-protein-serine acetyltransferase 1882607 rimL 2780953 rimL Candidatus Protochlamydia amoebophila UWE25 ribosomal-protein-serine acetyltransferase YP_008568.1 1882035 R 264201 CDS YP_008569.1 46447204 2779732 complement(1882604..1885366) 1 NC_005861.1 hypothetical protein 1885366 2779732 pc1570 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008569.1 1882604 R 264201 CDS YP_008570.1 46447205 2780481 1885398..1886966 1 NC_005861.1 similar to ribonuclease R; ribonuclease R 1886966 rnr 2780481 rnr Candidatus Protochlamydia amoebophila UWE25 ribonuclease R YP_008570.1 1885398 D 264201 CDS YP_008571.1 46447206 2779733 1887047..1888912 1 NC_005861.1 similar to tylosin resistance protein; tylosin resistance protein 1888912 2779733 pc1572 Candidatus Protochlamydia amoebophila UWE25 tylosin resistance protein YP_008571.1 1887047 D 264201 CDS YP_008572.1 46447207 2779592 1888990..1890591 1 NC_005861.1 strongly similar to peptide chain release factor 3; peptide chain release factor 3 1890591 rf-3 2779592 rf-3 Candidatus Protochlamydia amoebophila UWE25 peptide chain release factor 3 YP_008572.1 1888990 D 264201 CDS YP_008573.1 46447208 2780767 complement(1890612..1891160) 1 NC_005861.1 hypothetical protein 1891160 2780767 pc1574 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008573.1 1890612 R 264201 CDS YP_008574.1 46447209 2780768 complement(1891281..1891670) 1 NC_005861.1 hypothetical protein 1891670 2780768 pc1575 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008574.1 1891281 R 264201 CDS YP_008575.1 46447210 2779429 1892195..1892992 1 NC_005861.1 similar to inositol-1(or 4)-monophosphatase; inositol-1(or 4)-monophosphatase 1892992 suhB 2779429 suhB Candidatus Protochlamydia amoebophila UWE25 inositol-1(or 4)-monophosphatase YP_008575.1 1892195 D 264201 CDS YP_008576.1 46447211 2780769 1893085..1894290 1 NC_005861.1 hypothetical protein 1894290 2780769 pc1577 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008576.1 1893085 D 264201 CDS YP_008577.1 46447212 2780770 1894313..1895104 1 NC_005861.1 similar to blue fluorescent protein; blue fluorescent protein 1895104 2780770 pc1578 Candidatus Protochlamydia amoebophila UWE25 blue fluorescent protein YP_008577.1 1894313 D 264201 CDS YP_008578.1 46447213 2779886 complement(1895503..1896483) 1 NC_005861.1 similar to protein involved in tRNA-dihydrouridine synthesis; protein involved in tRNA-dihydrouridine synthesis 1896483 yohI 2779886 yohI Candidatus Protochlamydia amoebophila UWE25 protein involved in tRNA-dihydrouridine synthesis YP_008578.1 1895503 R 264201 CDS YP_008579.1 46447214 2779511 complement(1896546..1897781) 1 NC_005861.1 hypothetical protein 1897781 2779511 pc1580 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008579.1 1896546 R 264201 CDS YP_008580.1 46447215 2779512 1897953..1898858 1 NC_005861.1 hypothetical protein 1898858 2779512 pc1581 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008580.1 1897953 D 264201 CDS YP_008581.1 46447216 2779513 complement(1898943..1899770) 1 NC_005861.1 hypothetical protein 1899770 2779513 pc1582 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008581.1 1898943 R 264201 CDS YP_008582.1 46447217 2780814 1900144..1900920 1 NC_005861.1 hypothetical protein 1900920 2780814 pc1583 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008582.1 1900144 D 264201 CDS YP_008583.1 46447218 2780815 complement(1901204..1901389) 1 NC_005861.1 hypothetical protein 1901389 2780815 pc1584 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008583.1 1901204 R 264201 CDS YP_008584.1 46447219 2780816 complement(1901604..1901861) 1 NC_005861.1 hypothetical protein 1901861 2780816 pc1585 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008584.1 1901604 R 264201 CDS YP_008585.1 46447220 2780853 1902558..1902815 1 NC_005861.1 hypothetical protein 1902815 2780853 pc1586 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008585.1 1902558 D 264201 CDS YP_008586.1 46447221 2780170 complement(1903266..1904627) 1 NC_005861.1 similar to bifunctional protein involved in LPS core biosynthesis, hdlE; bifunctional protein involved in LPS core biosynthesis, hdlE 1904627 hldE 2780170 hldE Candidatus Protochlamydia amoebophila UWE25 bifunctional protein involved in LPS core biosynthesis, hdlE YP_008586.1 1903266 R 264201 CDS YP_008587.1 46447222 2780169 complement(1904621..1905607) 1 NC_005861.1 similar to ADP-D-beta-D-heptose epimerase, hldD; ADP-D-beta-heptose epimerase, hldD 1905607 hldD 2780169 hldD Candidatus Protochlamydia amoebophila UWE25 ADP-D-beta-heptose epimerase, hldD YP_008587.1 1904621 R 264201 CDS YP_008588.1 46447223 2780854 complement(1905729..1906595) 1 NC_005861.1 strongly similar to isopentenyl monophosphate kinase (IPK); isopentenyl monophosphate kinase (IPK) 1906595 2780854 pc1589 Candidatus Protochlamydia amoebophila UWE25 isopentenyl monophosphate kinase (IPK) YP_008588.1 1905729 R 264201 CDS YP_008589.1 46447224 2780855 complement(1906645..1907130) 1 NC_005861.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1907130 rplI 2780855 rplI Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L9 YP_008589.1 1906645 R 264201 CDS YP_008590.1 46447225 2780856 complement(1907154..1907414) 1 NC_005861.1 strongly similar to ribosomal protein S18; 30S ribosomal protein S18 1907414 rpsR 2780856 rpsR Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S18 YP_008590.1 1907154 R 264201 CDS YP_008591.1 46447226 2780382 complement(1907426..1907770) 1 NC_005861.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1907770 rpsF 2780382 rpsF Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S6 YP_008591.1 1907426 R 264201 CDS YP_008592.1 46447227 2780132 complement(1907781..1908377) 1 NC_005861.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1908377 spoVc 2780132 spoVc Candidatus Protochlamydia amoebophila UWE25 peptidyl-tRNA hydrolase YP_008592.1 1907781 R 264201 CDS YP_008593.1 46447228 2779647 complement(1908473..1909027) 1 NC_005861.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1909027 ctc 2779647 ctc Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L25 YP_008593.1 1908473 R 264201 CDS YP_008594.1 46447229 2779790 complement(1909193..1910134) 1 NC_005861.1 strongly similar to phosphoribosyl pyrophosphate synthetase (PRPP); phosphoribosyl pyrophosphate synthetase (PRPP) 1910134 prsA 2779790 prsA Candidatus Protochlamydia amoebophila UWE25 phosphoribosyl pyrophosphate synthetase (PRPP) YP_008594.1 1909193 R 264201 CDS YP_008595.1 46447230 2780897 1910591..1912093 1 NC_005861.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1912093 glgA 2780897 glgA Candidatus Protochlamydia amoebophila UWE25 glycogen synthase YP_008595.1 1910591 D 264201 CDS YP_008596.1 46447231 2779547 1912196..1912813 1 NC_005861.1 similar to phosphatidylglycerophosphate synthase (PGP synthase); phosphatidylglycerophosphate synthase (PGP synthase) 1912813 pgsA 2779547 pgsA Candidatus Protochlamydia amoebophila UWE25 phosphatidylglycerophosphate synthase (PGP synthase) YP_008596.1 1912196 D 264201 CDS YP_008597.1 46447232 2781269 complement(1913051..1914412) 1 NC_005861.1 similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent 1914412 dagA 2781269 dagA Candidatus Protochlamydia amoebophila UWE25 D-alanine/glycine transport protein, sodium-dependent YP_008597.1 1913051 R 264201 CDS YP_008598.1 46447233 2779462 complement(1914481..1915017) 1 NC_005861.1 hypothetical protein 1915017 2779462 pc1599 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008598.1 1914481 R 264201 CDS YP_008599.1 46447234 2779463 1915185..1915808 1 NC_005861.1 hypothetical protein 1915808 2779463 pc1600 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008599.1 1915185 D 264201 CDS YP_008600.1 46447235 2779817 complement(1915865..1917871) 1 NC_005861.1 strongly similar to ATP-dependent DNA helicase, mutU; ATP-dependent DNA helicase, mutU 1917871 pcrA 2779817 pcrA Candidatus Protochlamydia amoebophila UWE25 ATP-dependent DNA helicase, mutU YP_008600.1 1915865 R 264201 CDS YP_008601.1 46447236 2779464 1918217..1920091 1 NC_005861.1 hypothetical protein 1920091 2779464 pc1602 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008601.1 1918217 D 264201 CDS YP_008602.1 46447237 2779483 complement(1920235..1920564) 1 NC_005861.1 hypothetical protein 1920564 2779483 pc1603 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008602.1 1920235 R 264201 CDS YP_008603.1 46447238 2781056 complement(1920591..1920728) 1 NC_005861.1 strongly similar to 50S ribosomal protein L34; 50S ribosomal protein L34 1920728 rpmH 2781056 rpmH Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L34 YP_008603.1 1920591 R 264201 CDS YP_008604.1 46447239 2781451 1921054..1921191 1 NC_005861.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 1921191 rpmJ 2781451 rpmJ Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L36 YP_008604.1 1921054 D 264201 CDS YP_008605.1 46447240 2779484 1921202..1921507 1 NC_005861.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1921507 rpsN 2779484 rpsN Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S14 YP_008605.1 1921202 D 264201 CDS YP_008606.1 46447241 2779485 complement(1921655..1922131) 1 NC_005861.1 hypothetical protein 1922131 2779485 pc1607 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008606.1 1921655 R 264201 CDS YP_008607.1 46447242 2779486 1922564..1923043 1 NC_005861.1 hypothetical protein 1923043 2779486 pc1608 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008607.1 1922564 D 264201 CDS YP_008608.1 46447243 2780594 1923033..1923560 1 NC_005861.1 hypothetical protein 1923560 2780594 pc1609 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008608.1 1923033 D 264201 CDS YP_008609.1 46447244 2780595 complement(1923823..1924029) 1 NC_005861.1 hypothetical protein 1924029 2780595 pc1610 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008609.1 1923823 R 264201 CDS YP_008610.1 46447245 2780596 complement(1924358..1929142) 1 NC_005861.1 hypothetical protein 1929142 2780596 pc1611 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008610.1 1924358 R 264201 CDS YP_008611.1 46447246 2780705 1929220..1929426 1 NC_005861.1 hypothetical protein 1929426 2780705 pc1612 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008611.1 1929220 D 264201 CDS YP_008612.1 46447247 2780706 1929430..1929642 1 NC_005861.1 hypothetical protein 1929642 2780706 pc1613 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008612.1 1929430 D 264201 CDS YP_008613.1 46447248 2780707 1930051..1931562 1 NC_005861.1 hypothetical protein 1931562 2780707 pc1614 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008613.1 1930051 D 264201 CDS YP_008614.1 46447249 2780390 1932011..1932223 1 NC_005861.1 hypothetical protein 1932223 2780390 pc1615 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008614.1 1932011 D 264201 CDS YP_008615.1 46447250 2780391 1932755..1935196 1 NC_005861.1 hypothetical protein 1935196 2780391 pc1616 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008615.1 1932755 D 264201 CDS YP_008616.1 46447251 2780392 1935766..1935981 1 NC_005861.1 hypothetical protein 1935981 2780392 pc1617 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008616.1 1935766 D 264201 CDS YP_008617.1 46447252 2780571 complement(1936373..1939153) 1 NC_005861.1 hypothetical protein 1939153 2780571 pc1618 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008617.1 1936373 R 264201 CDS YP_008618.1 46447253 2780572 1939697..1939948 1 NC_005861.1 hypothetical protein 1939948 2780572 pc1619 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008618.1 1939697 D 264201 CDS YP_008619.1 46447254 2780573 1940867..1941415 1 NC_005861.1 hypothetical protein 1941415 2780573 pc1620 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008619.1 1940867 D 264201 CDS YP_008620.1 46447255 2781124 complement(1941388..1941969) 1 NC_005861.1 hypothetical protein 1941969 2781124 pc1621 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008620.1 1941388 R 264201 CDS YP_008621.1 46447256 2781125 1942484..1942792 1 NC_005861.1 hypothetical protein 1942792 2781125 pc1622 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008621.1 1942484 D 264201 CDS YP_008622.1 46447257 2781355 1943116..1943580 1 NC_005861.1 similar to transcription termination factor, nusB; transcription termination factor, nusB 1943580 nusB 2781355 nusB Candidatus Protochlamydia amoebophila UWE25 transcription termination factor, nusB YP_008622.1 1943116 D 264201 CDS YP_008623.1 46447258 2781163 1943549..1944448 1 NC_005861.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1944448 murB 2781163 murB Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylenolpyruvoylglucosamine reductase YP_008623.1 1943549 D 264201 CDS YP_008624.1 46447259 2781126 1944452..1945294 1 NC_005861.1 hypothetical protein 1945294 2781126 pc1625 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008624.1 1944452 D 264201 CDS YP_008625.1 46447260 2781341 1945299..1946531 1 NC_005861.1 similar to folylpolyglutamate synthase; folylpolyglutamate synthase 1946531 folC 2781341 folC Candidatus Protochlamydia amoebophila UWE25 folylpolyglutamate synthase YP_008625.1 1945299 D 264201 CDS YP_008626.1 46447261 2781127 1946741..1947202 1 NC_005861.1 hypothetical protein 1947202 2781127 pc1627 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008626.1 1946741 D 264201 CDS YP_008627.1 46447262 2779516 complement(1947297..1947893) 1 NC_005861.1 hypothetical protein 1947893 2779516 pc1628 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008627.1 1947297 R 264201 CDS YP_008628.1 46447263 2779523 complement(1948144..1949076) 1 NC_005861.1 similar to cytochrome bd-I oxidase subunit II; cytochrome bd-I oxidase subunit II 1949076 cydB 2779523 cydB Candidatus Protochlamydia amoebophila UWE25 cytochrome bd-I oxidase subunit II YP_008628.1 1948144 R 264201 CDS YP_008629.1 46447264 2779522 complement(1949159..1950556) 1 NC_005861.1 similar to cytochrome bd-I oxidase subunit I; cytochrome bd-I oxidase subunit I 1950556 cydA 2779522 cydA Candidatus Protochlamydia amoebophila UWE25 cytochrome bd-I oxidase subunit I YP_008629.1 1949159 R 264201 CDS YP_008630.1 46447265 2779517 complement(1950589..1950777) 1 NC_005861.1 hypothetical protein 1950777 2779517 pc1631 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008630.1 1950589 R 264201 CDS YP_008631.1 46447266 2781376 1950787..1951566 1 NC_005861.1 similar to dihydropteroate synthase; dihydropteroate synthase 1951566 folP 2781376 folP Candidatus Protochlamydia amoebophila UWE25 dihydropteroate synthase YP_008631.1 1950787 D 264201 CDS YP_008632.1 46447267 2779518 1951626..1952963 1 NC_005861.1 hypothetical protein 1952963 2779518 pc1633 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008632.1 1951626 D 264201 CDS YP_008633.1 46447268 2780511 1952953..1953675 1 NC_005861.1 hypothetical protein 1953675 2780511 pc1634 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008633.1 1952953 D 264201 CDS YP_008634.1 46447269 2780512 complement(1953622..1956414) 1 NC_005861.1 hypothetical protein 1956414 2780512 pc1635 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008634.1 1953622 R 264201 CDS YP_008635.1 46447270 2780270 complement(1956411..1958207) 1 NC_005861.1 strongly similar to pyruvate kinase; pyruvate kinase 1958207 pyk 2780270 pyk Candidatus Protochlamydia amoebophila UWE25 pyruvate kinase YP_008635.1 1956411 R 264201 CDS YP_008636.1 46447271 2780513 1958934..1959386 1 NC_005861.1 hypothetical protein 1959386 2780513 pc1637 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008636.1 1958934 D 264201 CDS YP_008637.1 46447272 2779480 complement(1959722..1960000) 1 NC_005861.1 hypothetical protein 1960000 2779480 pc1638 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008637.1 1959722 R 264201 CDS YP_008638.1 46447273 2779481 complement(1960060..1964661) 1 NC_005861.1 hypothetical protein 1964661 2779481 pc1639 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008638.1 1960060 R 264201 CDS YP_008639.1 46447274 2779482 1965252..1965542 1 NC_005861.1 hypothetical protein 1965542 2779482 pc1640 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008639.1 1965252 D 264201 CDS YP_008640.1 46447275 2780839 1965994..1971696 1 NC_005861.1 strongly similar to excinuclease ABC subunit A, uvrA; excinuclease ABC subunit A 1971696 uvrA 2780839 uvrA Candidatus Protochlamydia amoebophila UWE25 excinuclease ABC subunit A YP_008640.1 1965994 D 264201 CDS YP_008641.1 46447276 2780198 1971962..1973137 1 NC_005861.1 hypothetical protein 1973137 2780198 pc1642 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008641.1 1971962 D 264201 CDS YP_008642.1 46447277 2780199 complement(1973177..1973878) 1 NC_005861.1 hypothetical protein 1973878 2780199 pc1643 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008642.1 1973177 R 264201 CDS YP_008643.1 46447278 2780200 1974348..1974689 1 NC_005861.1 hypothetical protein 1974689 2780200 pc1644 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008643.1 1974348 D 264201 CDS YP_008644.1 46447279 2780931 1975141..1978089 1 NC_005861.1 hypothetical protein 1978089 2780931 pc1645 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008644.1 1975141 D 264201 CDS YP_008645.1 46447280 2779583 1978076..1978639 1 NC_005861.1 similar to mutT protein; mutT protein 1978639 mutT 2779583 mutT Candidatus Protochlamydia amoebophila UWE25 mutT protein YP_008645.1 1978076 D 264201 CDS YP_008646.1 46447281 2780932 complement(1979254..1979496) 1 NC_005861.1 hypothetical protein 1979496 2780932 pc1647 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008646.1 1979254 R 264201 CDS YP_008647.1 46447282 2780933 1979686..1979874 1 NC_005861.1 hypothetical protein 1979874 2780933 pc1648 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008647.1 1979686 D 264201 CDS YP_008648.1 46447283 2780934 complement(1979980..1981545) 1 NC_005861.1 hypothetical protein 1981545 2780934 pc1649 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008648.1 1979980 R 264201 CDS YP_008649.1 46447284 2780779 1982447..1982719 1 NC_005861.1 hypothetical protein 1982719 2780779 pc1650 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008649.1 1982447 D 264201 CDS YP_008650.1 46447285 2780780 1982943..1983281 1 NC_005861.1 hypothetical protein 1983281 2780780 pc1651 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008650.1 1982943 D 264201 CDS YP_008651.1 46447286 2780781 complement(1983718..1984677) 1 NC_005861.1 hypothetical protein 1984677 2780781 pc1652 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008651.1 1983718 R 264201 CDS YP_008652.1 46447287 2779565 1985382..1985594 1 NC_005861.1 hypothetical protein 1985594 2779565 pc1653 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008652.1 1985382 D 264201 CDS YP_008653.1 46447288 2781147 1986552..1989401 1 NC_005861.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1989401 valS 2781147 valS Candidatus Protochlamydia amoebophila UWE25 valyl-tRNA synthetase YP_008653.1 1986552 D 264201 CDS YP_008654.1 46447289 2779566 complement(1989473..1992784) 1 NC_005861.1 hypothetical protein 1992784 2779566 pc1655 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008654.1 1989473 R 264201 CDS YP_008655.1 46447290 2781270 complement(1993208..1994605) 1 NC_005861.1 similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent 1994605 dagA 2781270 dagA Candidatus Protochlamydia amoebophila UWE25 D-alanine/glycine transport protein, sodium-dependent YP_008655.1 1993208 R 264201 CDS YP_008656.1 46447291 2781271 complement(1994607..1995992) 1 NC_005861.1 similar to D-alanine/glycine transport protein, sodium-dependent; D-alanine/glycine transport protein, sodium-dependent 1995992 dagA 2781271 dagA Candidatus Protochlamydia amoebophila UWE25 D-alanine/glycine transport protein, sodium-dependent YP_008656.1 1994607 R 264201 CDS YP_008657.1 46447292 2779774 1996454..1997545 1 NC_005861.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1997545 aroF 2779774 aroF Candidatus Protochlamydia amoebophila UWE25 phospho-2-dehydro-3-deoxyheptonate aldolase YP_008657.1 1996454 D 264201 CDS YP_008658.1 46447293 2779567 1997524..1998057 1 NC_005861.1 hypothetical protein 1998057 2779567 pc1659 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008658.1 1997524 D 264201 CDS YP_008659.1 46447294 2779425 complement(1998054..1999445) 1 NC_005861.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1999445 fumC 2779425 fumC Candidatus Protochlamydia amoebophila UWE25 fumarate hydratase YP_008659.1 1998054 R 264201 CDS YP_008660.1 46447295 2781152 complement(1999452..2000423) 1 NC_005861.1 hypothetical protein 2000423 2781152 pc1661 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008660.1 1999452 R 264201 CDS YP_008661.1 46447296 2781153 2000642..2000824 1 NC_005861.1 hypothetical protein 2000824 2781153 pc1662 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008661.1 2000642 D 264201 CDS YP_008662.1 46447297 2780906 complement(2000914..2001852) 1 NC_005861.1 similar to o-succinylbenzoate synthase II, menC; o-succinylbenzoate synthase II, menC 2001852 menC 2780906 menC Candidatus Protochlamydia amoebophila UWE25 o-succinylbenzoate synthase II, menC YP_008662.1 2000914 R 264201 CDS YP_008663.1 46447298 2781154 complement(2002626..2002958) 1 NC_005861.1 hypothetical protein 2002958 2781154 pc1664 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008663.1 2002626 R 264201 CDS YP_008664.1 46447299 2779449 complement(2003198..2003434) 1 NC_005861.1 hypothetical protein 2003434 2779449 pc1665 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008664.1 2003198 R 264201 CDS YP_008665.1 46447300 2779450 complement(2003442..2004998) 1 NC_005861.1 hypothetical protein 2004998 2779450 pc1666 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008665.1 2003442 R 264201 CDS YP_008666.1 46447301 2779779 complement(2005543..2005986) 1 NC_005861.1 similar to H+-transporting two-sector ATPase (epsilon chain, atpC); H+-transporting two-sector ATPase (epsilon chain, atpC) 2005986 atpC 2779779 atpC Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase (epsilon chain, atpC) YP_008666.1 2005543 R 264201 CDS YP_008667.1 46447302 2779826 complement(2006004..2007464) 1 NC_005861.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 2007464 atpD 2779826 atpD Candidatus Protochlamydia amoebophila UWE25 ATP synthase F0F1 subunit beta YP_008667.1 2006004 R 264201 CDS YP_008668.1 46447303 2779813 complement(2007511..2008368) 1 NC_005861.1 similar to H+-transporting two-sector ATPase (gamma chain, atpG); H+-transporting two-sector ATPase (gamma chain, atpG) 2008368 atpG 2779813 atpG Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase (gamma chain, atpG) YP_008668.1 2007511 R 264201 CDS YP_008669.1 46447304 2779806 complement(2008386..2009912) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 2009912 atpA 2779806 atpA Candidatus Protochlamydia amoebophila UWE25 ATP synthase F0F1 subunit alpha YP_008669.1 2008386 R 264201 CDS YP_008670.1 46447305 2779814 complement(2009921..2010466) 1 NC_005861.1 similar to H+-transporting two-sector ATPase (delta chain, atpH); H+-transporting two-sector ATPase (delta chain, atpH) 2010466 atpH 2779814 atpH Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase (delta chain, atpH) YP_008670.1 2009921 R 264201 CDS YP_008671.1 46447306 2779828 complement(2010463..2010945) 1 NC_005861.1 similar to H+-transporting two-sector ATPase (chain b, atpF); H+-transporting two-sector ATPase (chain b, atpF) 2010945 atpF 2779828 atpF Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase (chain b, atpF) YP_008671.1 2010463 R 264201 CDS YP_008672.1 46447307 2779827 complement(2010953..2011249) 1 NC_005861.1 strongly similar to H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE); H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE) 2011249 atpE 2779827 atpE Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase lipid-binding protein (chainC, atpE) YP_008672.1 2010953 R 264201 CDS YP_008673.1 46447308 2779777 complement(2011342..2012157) 1 NC_005861.1 similar to H+-transporting two-sector ATPase (chain a, atpB); H+-transporting two-sector ATPase (chain a, atpB) 2012157 atpB 2779777 atpB Candidatus Protochlamydia amoebophila UWE25 H+-transporting two-sector ATPase (chain a, atpB) YP_008673.1 2011342 R 264201 CDS YP_008674.1 46447309 2779451 complement(2012154..2012549) 1 NC_005861.1 hypothetical protein 2012549 2779451 pc1675 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008674.1 2012154 R 264201 CDS YP_008675.1 46447310 2779861 complement(2012813..2013235) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; V-type ATP synthase subunit K 2013235 ntpK 2779861 ntpK Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit K YP_008675.1 2012813 R 264201 CDS YP_008676.1 46447311 2779860 complement(2013253..2015169) 1 NC_005861.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I is part of the membrane proton channel.; V-type ATP synthase subunit I 2015169 ntpI 2779860 ntpI Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit I YP_008676.1 2013253 R 264201 CDS YP_008677.1 46447312 2780895 complement(2015162..2015809) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 2015809 ntpD 2780895 ntpD Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit D YP_008677.1 2015162 R 264201 CDS YP_008678.1 46447313 2779778 complement(2015824..2017140) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 2017140 atpB 2779778 atpB Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit B YP_008678.1 2015824 R 264201 CDS YP_008679.1 46447314 2780894 complement(2017158..2018939) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 2018939 ntpA 2780894 ntpA Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit A YP_008679.1 2017158 R 264201 CDS YP_008680.1 46447315 2779926 complement(2018941..2019732) 1 NC_005861.1 hypothetical protein 2019732 2779926 pc1681 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008680.1 2018941 R 264201 CDS YP_008681.2 229221136 2779859 complement(2019734..2020360) 1 NC_005861.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the E subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit E 2020360 ntpE 2779859 ntpE Candidatus Protochlamydia amoebophila UWE25 V-type ATP synthase subunit E YP_008681.2 2019734 R 264201 CDS YP_008682.1 46447317 2779927 2020974..2021789 1 NC_005861.1 hypothetical protein 2021789 2779927 pc1683 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008682.1 2020974 D 264201 CDS YP_008683.1 46447318 2779928 2021813..2022109 1 NC_005861.1 hypothetical protein 2022109 2779928 pc1684 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008683.1 2021813 D 264201 CDS YP_008684.1 46447319 2779929 2022139..2022615 1 NC_005861.1 hypothetical protein 2022615 2779929 pc1685 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008684.1 2022139 D 264201 CDS YP_008685.1 46447320 2780938 2023124..2023489 1 NC_005861.1 hypothetical protein 2023489 2780938 pc1686 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008685.1 2023124 D 264201 CDS YP_008686.1 46447321 2780939 2023823..2024119 1 NC_005861.1 hypothetical protein 2024119 2780939 pc1687 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008686.1 2023823 D 264201 CDS YP_008687.1 46447322 2780940 complement(2024120..2024947) 1 NC_005861.1 hypothetical protein 2024947 2780940 pc1688 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008687.1 2024120 R 264201 CDS YP_008688.1 46447323 2780924 complement(2025034..2026809) 1 NC_005861.1 hypothetical protein 2026809 2780924 pc1689 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008688.1 2025034 R 264201 CDS YP_008689.1 46447324 2780925 2027067..2027459 1 NC_005861.1 hypothetical protein 2027459 2780925 pc1690 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008689.1 2027067 D 264201 CDS YP_008690.1 46447325 2781130 2027480..2028448 1 NC_005861.1 Maintains the balance of metabolites in the pentose-phosphate pathway; transaldolase B 2028448 talB 2781130 talB Candidatus Protochlamydia amoebophila UWE25 transaldolase B YP_008690.1 2027480 D 264201 CDS YP_008691.1 46447326 2780926 complement(2028678..2029973) 1 NC_005861.1 hypothetical protein 2029973 2780926 pc1692 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008691.1 2028678 R 264201 CDS YP_008692.1 46447327 2781258 complement(2029991..2030932) 1 NC_005861.1 hypothetical protein 2030932 2781258 pc1693 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008692.1 2029991 R 264201 CDS YP_008693.1 46447328 2781259 complement(2031353..2033209) 1 NC_005861.1 hypothetical protein 2033209 2781259 pc1694 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008693.1 2031353 R 264201 CDS YP_008694.1 46447329 2780015 2033509..2034918 1 NC_005861.1 strongly similar to UDPglucose 6-dehydrogenase; udpglucose 6-dehydrogenase 2034918 rkpK 2780015 rkpK Candidatus Protochlamydia amoebophila UWE25 udpglucose 6-dehydrogenase YP_008694.1 2033509 D 264201 CDS YP_008695.1 46447330 2779646 2034915..2035799 1 NC_005861.1 strongly similar to farnesyltranstransferase; farnesyltranstransferase 2035799 crtE 2779646 crtE Candidatus Protochlamydia amoebophila UWE25 farnesyltranstransferase YP_008695.1 2034915 D 264201 CDS YP_008696.1 46447331 2780633 2035970..2036623 1 NC_005861.1 strongly similar to exopolysaccharide production protein; exopolysaccharide production protein 2036623 exoY 2780633 exoY Candidatus Protochlamydia amoebophila UWE25 exopolysaccharide production protein YP_008696.1 2035970 D 264201 CDS YP_008697.1 46447332 2781260 2036712..2037230 1 NC_005861.1 hypothetical protein 2037230 2781260 pc1698 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008697.1 2036712 D 264201 CDS YP_008698.1 46447333 2779916 2037227..2038495 1 NC_005861.1 recombination factor protein RarA 2038495 2779916 pc1699 Candidatus Protochlamydia amoebophila UWE25 recombination factor protein RarA YP_008698.1 2037227 D 264201 CDS YP_008699.1 46447334 2779917 complement(2038490..2038993) 1 NC_005861.1 hypothetical protein 2038993 2779917 pc1700 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008699.1 2038490 R 264201 CDS YP_008700.1 46447335 2781342 2039368..2040246 1 NC_005861.1 strongly similar to bifunctional protein folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase FolD 2040246 folD 2781342 folD Candidatus Protochlamydia amoebophila UWE25 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase FolD YP_008700.1 2039368 D 264201 CDS YP_008701.1 46447336 2779796 2040243..2041316 1 NC_005861.1 similar to Thiamine biosynthesis lipoprotein apbE precursor; thiamine biosynthesis lipoprotein apbE 2041316 apbE 2779796 apbE Candidatus Protochlamydia amoebophila UWE25 thiamine biosynthesis lipoprotein apbE YP_008701.1 2040243 D 264201 CDS YP_008702.1 46447337 2779918 complement(2041522..2041782) 1 NC_005861.1 hypothetical protein 2041782 2779918 pc1703 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008702.1 2041522 R 264201 CDS YP_008703.1 46447338 2780064 2042177..2043535 1 NC_005861.1 hypothetical protein 2043535 2780064 pc1704 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008703.1 2042177 D 264201 CDS YP_008704.1 46447339 2779830 2043622..2044833 1 NC_005861.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2044833 dnaN 2779830 dnaN Candidatus Protochlamydia amoebophila UWE25 DNA polymerase III subunit beta YP_008704.1 2043622 D 264201 CDS YP_008705.1 46447340 2781076 2044842..2045921 1 NC_005861.1 similar to DNA replication and repair protein recF; DNA replication and repair protein recF 2045921 recF 2781076 recF Candidatus Protochlamydia amoebophila UWE25 DNA replication and repair protein recF YP_008705.1 2044842 D 264201 CDS YP_008706.1 46447341 2780065 2046098..2046559 1 NC_005861.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2046559 smpB 2780065 smpB Candidatus Protochlamydia amoebophila UWE25 SsrA-binding protein YP_008706.1 2046098 D 264201 CDS YP_008707.1 46447342 2780066 2046649..2047071 1 NC_005861.1 hypothetical protein 2047071 2780066 pc1708 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008707.1 2046649 D 264201 CDS YP_008708.1 46447343 2780067 complement(2047822..2048220) 1 NC_005861.1 hypothetical protein 2048220 2780067 pc1709 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008708.1 2047822 R 264201 CDS YP_008709.1 46447344 2780600 2048857..2049951 1 NC_005861.1 hypothetical protein 2049951 2780600 pc1710 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008709.1 2048857 D 264201 CDS YP_008710.1 46447345 2781017 2050094..2050462 1 NC_005861.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2050462 acpS 2781017 acpS Candidatus Protochlamydia amoebophila UWE25 4'-phosphopantetheinyl transferase YP_008710.1 2050094 D 264201 CDS YP_008711.1 46447346 2780601 complement(2050531..2051352) 1 NC_005861.1 hypothetical protein 2051352 2780601 pc1712 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008711.1 2050531 R 264201 CDS YP_008712.1 46447347 2781311 complement(2051352..2052302) 1 NC_005861.1 strongly similar to thioredoxin-disulfide reductase 2; thioredoxin-disulfide reductase 2 2052302 trxB 2781311 trxB Candidatus Protochlamydia amoebophila UWE25 thioredoxin-disulfide reductase 2 YP_008712.1 2051352 R 264201 CDS YP_008713.1 46447348 2780602 2052603..2053100 1 NC_005861.1 hypothetical protein 2053100 2780602 pc1714 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008713.1 2052603 D 264201 CDS YP_008714.1 46447349 2780269 2053532..2054962 1 NC_005861.1 strongly similar to sodium/proline symporter; sodium/proline symporter 2054962 putP 2780269 putP Candidatus Protochlamydia amoebophila UWE25 sodium/proline symporter YP_008714.1 2053532 D 264201 CDS YP_008715.1 46447350 2780112 2055402..2057195 1 NC_005861.1 hypothetical protein 2057195 2780112 pc1716 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008715.1 2055402 D 264201 CDS YP_008716.1 46447351 2781016 complement(2057266..2057499) 1 NC_005861.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 2057499 acpP 2781016 acpP Candidatus Protochlamydia amoebophila UWE25 acyl carrier protein YP_008716.1 2057266 R 264201 CDS YP_008717.1 46447352 2780156 complement(2057665..2058420) 1 NC_005861.1 strongly similar to 3-oxoacyl-[acyl-carrier protein] reductase, fabG; 3-oxoacyl-ACP reductase 2058420 fabG 2780156 fabG Candidatus Protochlamydia amoebophila UWE25 3-oxoacyl-ACP reductase YP_008717.1 2057665 R 264201 CDS YP_008718.1 46447353 2780634 complement(2058490..2059479) 1 NC_005861.1 similar to malonyl CoA-acyl carrier protein transacylase, fabD; malonyl CoA-acyl carrier protein transacylase, fabD 2059479 fabD 2780634 fabD Candidatus Protochlamydia amoebophila UWE25 malonyl CoA-acyl carrier protein transacylase, fabD YP_008718.1 2058490 R 264201 CDS YP_008719.1 46447354 2780157 complement(2059443..2060441) 1 NC_005861.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2060441 fabH 2780157 fabH Candidatus Protochlamydia amoebophila UWE25 3-oxoacyl-ACP synthase YP_008719.1 2059443 R 264201 CDS YP_008720.1 46447355 2780113 complement(2060561..2060788) 1 NC_005861.1 hypothetical protein 2060788 2780113 pc1721 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008720.1 2060561 R 264201 CDS YP_008721.1 46447356 2780114 2061096..2061332 1 NC_005861.1 hypothetical protein 2061332 2780114 pc1722 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008721.1 2061096 D 264201 CDS YP_008722.1 46447357 2779649 2061490..2061678 1 NC_005861.1 hypothetical protein 2061678 2779649 pc1723 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008722.1 2061490 D 264201 CDS YP_008723.1 46447358 2779495 2061749..2062345 1 NC_005861.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2062345 recR 2779495 recR Candidatus Protochlamydia amoebophila UWE25 recombination protein RecR YP_008723.1 2061749 D 264201 CDS YP_008724.1 46447359 2779650 complement(2062406..2062636) 1 NC_005861.1 hypothetical protein 2062636 2779650 pc1725 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008724.1 2062406 R 264201 CDS YP_008725.1 46447360 2779866 2063055..2065502 1 NC_005861.1 similar to outer membrane protein Omp85; outer membrane protein Omp85 2065502 omp85 2779866 omp85 Candidatus Protochlamydia amoebophila UWE25 outer membrane protein Omp85 YP_008725.1 2063055 D 264201 CDS YP_008726.1 46447361 2779651 2065598..2066170 1 NC_005861.1 hypothetical protein 2066170 2779651 pc1727 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008726.1 2065598 D 264201 CDS YP_008727.1 46447362 2780009 2066322..2067371 1 NC_005861.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2067371 lpxD 2780009 lpxD Candidatus Protochlamydia amoebophila UWE25 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_008727.1 2066322 D 264201 CDS YP_008728.1 46447363 2779664 complement(2067457..2068917) 1 NC_005861.1 similar to phosphoprotein phosphatase; phosphoprotein phosphatase 2068917 ptc1 2779664 ptc1 Candidatus Protochlamydia amoebophila UWE25 phosphoprotein phosphatase YP_008728.1 2067457 R 264201 CDS YP_008729.1 46447364 2779652 complement(2069274..2070047) 1 NC_005861.1 hypothetical protein 2070047 2779652 pc1730 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008729.1 2069274 R 264201 CDS YP_008730.1 46447365 2780360 complement(2070586..2071887) 1 NC_005861.1 Catalyzes the transfer of acetyl from acetyldihydrolipoamide to coenzyme A to form acetyl CoA; branched-chain alpha-keto acid dehydrogenase subunit E2 2071887 pdhC 2780360 pdhC Candidatus Protochlamydia amoebophila UWE25 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_008730.1 2070586 R 264201 CDS YP_008731.1 46447366 2780359 complement(2071900..2072892) 1 NC_005861.1 strongly similar to pyruvate dehydrogenase (lipoamide), E1 component, beta chain; pyruvate dehydrogenase (lipoamide), E1 component, beta chain 2072892 pdhB 2780359 pdhB Candidatus Protochlamydia amoebophila UWE25 pyruvate dehydrogenase (lipoamide), E1 component, beta chain YP_008731.1 2071900 R 264201 CDS YP_008732.1 46447367 2779818 complement(2072904..2073932) 1 NC_005861.1 similar to pyruvate dehydrogenase (lipoamide), E1 component, alpha chain; pyruvate dehydrogenase (lipoamide), E1 component, alpha chain 2073932 pdhA 2779818 pdhA Candidatus Protochlamydia amoebophila UWE25 pyruvate dehydrogenase (lipoamide), E1 component, alpha chain YP_008732.1 2072904 R 264201 CDS YP_008733.1 46447368 2779536 complement(2074246..2075505) 1 NC_005861.1 similar to neutral amino acid (glutamate) transporter; neutral amino acid (glutamate) transporter 2075505 aaaT 2779536 aaaT Candidatus Protochlamydia amoebophila UWE25 neutral amino acid (glutamate) transporter YP_008733.1 2074246 R 264201 CDS YP_008734.1 46447369 2779725 complement(2075684..2076316) 1 NC_005861.1 hypothetical protein 2076316 2779725 pc1735 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008734.1 2075684 R 264201 CDS YP_008735.1 46447370 2779726 complement(2076378..2076851) 1 NC_005861.1 hypothetical protein 2076851 2779726 pc1736 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008735.1 2076378 R 264201 CDS YP_008736.1 46447371 2779727 complement(2076864..2077892) 1 NC_005861.1 hypothetical protein 2077892 2779727 pc1737 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008736.1 2076864 R 264201 CDS YP_008737.1 46447372 2780629 complement(2077934..2078413) 1 NC_005861.1 hypothetical protein 2078413 2780629 pc1738 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008737.1 2077934 R 264201 CDS YP_008738.1 46447373 2780630 complement(2078410..2080641) 1 NC_005861.1 hypothetical protein 2080641 2780630 pc1739 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008738.1 2078410 R 264201 CDS YP_008739.1 46447374 2780631 complement(2081062..2081484) 1 NC_005861.1 hypothetical protein 2081484 2780631 pc1740 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008739.1 2081062 R 264201 CDS YP_008740.1 46447375 2780021 complement(2081884..2082486) 1 NC_005861.1 hypothetical protein 2082486 2780021 pc1741 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008740.1 2081884 R 264201 CDS YP_008741.1 46447376 2780022 2083563..2084408 1 NC_005861.1 hypothetical protein 2084408 2780022 pc1742 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008741.1 2083563 D 264201 CDS YP_008742.1 46447377 2780023 2084520..2084849 1 NC_005861.1 hypothetical protein 2084849 2780023 pc1743 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008742.1 2084520 D 264201 CDS YP_008743.1 46447378 2780275 complement(2085204..2085479) 1 NC_005861.1 hypothetical protein 2085479 2780275 pc1744 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008743.1 2085204 R 264201 CDS YP_008744.1 46447379 2780276 complement(2085620..2086453) 1 NC_005861.1 hypothetical protein 2086453 2780276 pc1745 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008744.1 2085620 R 264201 CDS YP_008745.1 46447380 2780277 2086764..2086985 1 NC_005861.1 hypothetical protein 2086985 2780277 pc1746 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008745.1 2086764 D 264201 CDS YP_008746.1 46447381 2780278 2087430..2087612 1 NC_005861.1 hypothetical protein 2087612 2780278 pc1747 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008746.1 2087430 D 264201 CDS YP_008747.1 46447382 2781344 complement(2087714..2089012) 1 NC_005861.1 strongly similar to glutamate-1-semialdehyde 2,1-aminomutase; glutamate-1-semialdehyde 2,1-aminomutase 2089012 hemL 2781344 hemL Candidatus Protochlamydia amoebophila UWE25 glutamate-1-semialdehyde 2,1-aminomutase YP_008747.1 2087714 R 264201 CDS YP_008748.1 46447383 2780976 2089174..2091126 1 NC_005861.1 hypothetical protein 2091126 2780976 pc1749 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008748.1 2089174 D 264201 CDS YP_008749.1 46447384 2780977 2091138..2095004 1 NC_005861.1 hypothetical protein 2095004 2780977 pc1750 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008749.1 2091138 D 264201 CDS YP_008750.1 46447385 2780978 2095285..2095647 1 NC_005861.1 hypothetical protein 2095647 2780978 pc1751 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008750.1 2095285 D 264201 CDS YP_008751.1 46447386 2780970 2096082..2096804 1 NC_005861.1 hypothetical protein 2096804 2780970 pc1752 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008751.1 2096082 D 264201 CDS YP_008752.1 46447387 2780971 2096919..2097632 1 NC_005861.1 hypothetical protein 2097632 2780971 pc1753 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008752.1 2096919 D 264201 CDS YP_008753.1 46447388 2780972 2097638..2098867 1 NC_005861.1 hypothetical protein 2098867 2780972 pc1754 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008753.1 2097638 D 264201 CDS YP_008754.1 46447389 2781105 2098887..2099456 1 NC_005861.1 hypothetical protein 2099456 2781105 pc1755 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008754.1 2098887 D 264201 CDS YP_008755.1 46447390 2781247 complement(2099720..2100109) 1 NC_005861.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2100109 rpsI 2781247 rpsI Candidatus Protochlamydia amoebophila UWE25 30S ribosomal protein S9 YP_008755.1 2099720 R 264201 CDS YP_008756.1 46447391 2780016 complement(2100127..2100558) 1 NC_005861.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2100558 rplM 2780016 rplM Candidatus Protochlamydia amoebophila UWE25 50S ribosomal protein L13 YP_008756.1 2100127 R 264201 CDS YP_008757.1 46447392 2781015 2101062..2102414 1 NC_005861.1 strongly similar to 2-methylthioadenine synthetase; 2-methylthioadenine synthetase 2102414 miaB 2781015 miaB Candidatus Protochlamydia amoebophila UWE25 2-methylthioadenine synthetase YP_008757.1 2101062 D 264201 CDS YP_008758.1 46447393 2781210 complement(2102482..2103099) 1 NC_005861.1 similar to Superoxide dismutase (Cu-Zn); superoxide dismutase (Cu-Zn) 2103099 sodC 2781210 sodC Candidatus Protochlamydia amoebophila UWE25 superoxide dismutase (Cu-Zn) YP_008758.1 2102482 R 264201 CDS YP_008759.1 46447394 2779561 complement(2103293..2105290) 1 NC_005861.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 2105290 ligA 2779561 ligA Candidatus Protochlamydia amoebophila UWE25 NAD-dependent DNA ligase LigA YP_008759.1 2103293 R 264201 CDS YP_008760.1 46447395 2780898 complement(2105546..2107729) 1 NC_005861.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2107729 glgB 2780898 glgB Candidatus Protochlamydia amoebophila UWE25 glycogen branching protein YP_008760.1 2105546 R 264201 CDS YP_008761.1 46447396 2781106 complement(2107774..2108832) 1 NC_005861.1 hypothetical protein 2108832 2781106 pc1762 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008761.1 2107774 R 264201 CDS YP_008762.1 46447397 2779887 complement(2108901..2110205) 1 NC_005861.1 similar to 2-methylthioadenine synthetase; 2-methylthioadenine synthetase 2110205 yqeV 2779887 yqeV Candidatus Protochlamydia amoebophila UWE25 2-methylthioadenine synthetase YP_008762.1 2108901 R 264201 CDS YP_008763.1 46447398 2781107 complement(2110399..2117607) 1 NC_005861.1 hypothetical protein 2117607 2781107 pc1764 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008763.1 2110399 R 264201 CDS YP_008764.1 46447399 2781393 complement(2117803..2118498) 1 NC_005861.1 similar to DNA repair protein radC; DNA repair protein radC 2118498 radC 2781393 radC Candidatus Protochlamydia amoebophila UWE25 DNA repair protein radC YP_008764.1 2117803 R 264201 CDS YP_008765.1 46447400 2781108 complement(2118506..2119840) 1 NC_005861.1 hypothetical protein 2119840 2781108 pc1766 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008765.1 2118506 R 264201 CDS YP_008766.1 46447401 2779550 complement(2119844..2120560) 1 NC_005861.1 similar to phnP protein; phnP protein 2120560 phnP 2779550 phnP Candidatus Protochlamydia amoebophila UWE25 phnP protein YP_008766.1 2119844 R 264201 CDS YP_008767.1 46447402 2780102 complement(2120633..2121187) 1 NC_005861.1 hypothetical protein 2121187 2780102 pc1768 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008767.1 2120633 R 264201 CDS YP_008768.1 46447403 2780103 2121400..2122404 1 NC_005861.1 hypothetical protein 2122404 2780103 pc1769 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008768.1 2121400 D 264201 CDS YP_008769.1 46447404 2780104 complement(2122460..2123209) 1 NC_005861.1 hypothetical protein 2123209 2780104 pc1770 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008769.1 2122460 R 264201 CDS YP_008770.1 46447405 2781426 complement(2123290..2124450) 1 NC_005861.1 similar to citrate (si)-synthase; type I citrate synthase 2124450 gltA 2781426 gltA Candidatus Protochlamydia amoebophila UWE25 type I citrate synthase YP_008770.1 2123290 R 264201 CDS YP_008771.1 46447406 2779853 complement(2124504..2125496) 1 NC_005861.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 2125496 mdh 2779853 mdh Candidatus Protochlamydia amoebophila UWE25 malate dehydrogenase YP_008771.1 2124504 R 264201 CDS YP_008772.1 46447407 2780374 2125717..2126610 1 NC_005861.1 hypothetical protein 2126610 2780374 pc1773 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008772.1 2125717 D 264201 CDS YP_008773.1 46447408 2780375 complement(2126735..2127556) 1 NC_005861.1 hypothetical protein 2127556 2780375 pc1774 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008773.1 2126735 R 264201 CDS YP_008774.1 46447409 2780376 2132904..2133227 1 NC_005861.1 hypothetical protein 2133227 2780376 pc1775 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008774.1 2132904 D 264201 CDS YP_008775.1 46447410 2780150 2133230..2133439 1 NC_005861.1 hypothetical protein 2133439 2780150 pc1776 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008775.1 2133230 D 264201 CDS YP_008776.1 46447411 2780151 2133440..2133685 1 NC_005861.1 hypothetical protein 2133685 2780151 pc1777 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008776.1 2133440 D 264201 CDS YP_008777.1 46447412 2780152 complement(2134357..2135349) 1 NC_005861.1 hypothetical protein 2135349 2780152 pc1778 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008777.1 2134357 R 264201 CDS YP_008778.1 46447413 2780153 complement(2135658..2136014) 1 NC_005861.1 hypothetical protein 2136014 2780153 pc1779 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008778.1 2135658 R 264201 CDS YP_008779.1 46447414 2779571 2136080..2136328 1 NC_005861.1 hypothetical protein 2136328 2779571 pc1780 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008779.1 2136080 D 264201 CDS YP_008780.1 46447415 2779572 2136361..2136813 1 NC_005861.1 hypothetical protein 2136813 2779572 pc1781 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008780.1 2136361 D 264201 CDS YP_008781.1 46447416 2780172 complement(2136836..2137795) 1 NC_005861.1 similar to Gut Q protein; Gut Q protein 2137795 gutQ 2780172 gutQ Candidatus Protochlamydia amoebophila UWE25 Gut Q protein YP_008781.1 2136836 R 264201 CDS YP_008782.1 46447417 2779942 2137886..2139337 1 NC_005861.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 2139337 icd 2779942 icd Candidatus Protochlamydia amoebophila UWE25 isocitrate dehydrogenase YP_008782.1 2137886 D 264201 CDS YP_008783.1 46447418 2779573 complement(2139381..2140184) 1 NC_005861.1 hypothetical protein 2140184 2779573 pc1784 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008783.1 2139381 R 264201 CDS YP_008784.1 46447419 2781427 complement(2140226..2141455) 1 NC_005861.1 similar to proton/sodium-glutamate symporter; proton/sodium-glutamate symporter 2141455 gltT 2781427 gltT Candidatus Protochlamydia amoebophila UWE25 proton/sodium-glutamate symporter YP_008784.1 2140226 R 264201 CDS YP_008785.1 46447420 2780010 complement(2141506..2142612) 1 NC_005861.1 similar to tetraacyldisaccharide (lipid A) 4'-kinase; tetraacyldisaccharide (lipid A) 4'-kinase 2142612 lpxK 2780010 lpxK Candidatus Protochlamydia amoebophila UWE25 tetraacyldisaccharide (lipid A) 4'-kinase YP_008785.1 2141506 R 264201 CDS YP_008786.1 46447421 2781424 complement(2142690..2143334) 1 NC_005861.1 strongly similar to phosphoheptose isomerase; phosphoheptose isomerase 2143334 gmhA 2781424 gmhA Candidatus Protochlamydia amoebophila UWE25 phosphoheptose isomerase YP_008786.1 2142690 R 264201 CDS YP_008787.1 46447422 2779397 2143439..2144032 1 NC_005861.1 hypothetical protein 2144032 2779397 pc1788 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008787.1 2143439 D 264201 CDS YP_008788.1 46447423 2779398 2144168..2144437 1 NC_005861.1 hypothetical protein 2144437 2779398 pc1789 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008788.1 2144168 D 264201 CDS YP_008789.1 46447424 2779399 2144705..2145937 1 NC_005861.1 hypothetical protein 2145937 2779399 pc1790 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008789.1 2144705 D 264201 CDS YP_008790.1 46447425 2780181 complement(2146000..2146659) 1 NC_005861.1 similar to 23S rRNA pseudouridine synthase; 23S rRNA pseudouridine synthase 2146659 rlu 2780181 rlu Candidatus Protochlamydia amoebophila UWE25 23S rRNA pseudouridine synthase YP_008790.1 2146000 R 264201 CDS YP_008791.1 46447426 2780017 complement(2146661..2147458) 1 NC_005861.1 similar to rRNA methylase; rRNA methylase 2147458 rlmB 2780017 rlmB Candidatus Protochlamydia amoebophila UWE25 rRNA methylase YP_008791.1 2146661 R 264201 CDS YP_008792.1 46447427 2781057 complement(2147469..2148332) 1 NC_005861.1 hypothetical protein 2148332 2781057 pc1793 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008792.1 2147469 R 264201 CDS YP_008793.1 46447428 2779437 2148700..2149728 1 NC_005861.1 similar to exopolyphosphatase; exopolyphosphatase 2149728 ppx 2779437 ppx Candidatus Protochlamydia amoebophila UWE25 exopolyphosphatase YP_008793.1 2148700 D 264201 CDS YP_008794.1 46447429 2781058 complement(2149879..2150169) 1 NC_005861.1 hypothetical protein 2150169 2781058 pc1795 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008794.1 2149879 R 264201 CDS YP_008795.1 46447430 2781059 complement(2150141..2150842) 1 NC_005861.1 hypothetical protein 2150842 2781059 pc1796 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008795.1 2150141 R 264201 CDS YP_008796.1 46447431 2780011 complement(2150845..2151372) 1 NC_005861.1 similar to signal peptidase II (prolipoprotein signal peptidase); signal peptidase II (prolipoprotein signal peptidase) 2151372 lspA 2780011 lspA Candidatus Protochlamydia amoebophila UWE25 signal peptidase II (prolipoprotein signal peptidase) YP_008796.1 2150845 R 264201 CDS YP_008797.1 46447432 2780086 complement(2151389..2151754) 1 NC_005861.1 similar to dnaK suppressor; molecular chaperone DnaK 2151754 dksA 2780086 dksA Candidatus Protochlamydia amoebophila UWE25 molecular chaperone DnaK YP_008797.1 2151389 R 264201 CDS YP_008798.1 46447433 2781060 complement(2151804..2152292) 1 NC_005861.1 transcriptional regulator NrdR 2152292 nrdR 2781060 nrdR Candidatus Protochlamydia amoebophila UWE25 transcriptional regulator NrdR YP_008798.1 2151804 R 264201 CDS YP_008799.1 46447434 2781414 2152728..2153858 1 NC_005861.1 strongly similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ Antisuppressor; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ antisuppressor 2153858 ycfB 2781414 ycfB Candidatus Protochlamydia amoebophila UWE25 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ antisuppressor YP_008799.1 2152728 D 264201 CDS YP_008800.1 46447435 2779426 complement(2154184..2154576) 1 NC_005861.1 similar to ferric uptake regulator protein; ferric uptake regulator protein 2154576 fur 2779426 fur Candidatus Protochlamydia amoebophila UWE25 ferric uptake regulator protein YP_008800.1 2154184 R 264201 CDS YP_008801.1 46447436 2780604 2154674..2155492 1 NC_005861.1 hypothetical protein 2155492 2780604 pc1802 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008801.1 2154674 D 264201 CDS YP_008802.1 46447437 2780605 complement(2155562..2156632) 1 NC_005861.1 hypothetical protein 2156632 2780605 pc1803 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008802.1 2155562 R 264201 CDS YP_008803.1 46447438 2780036 2156942..2157388 1 NC_005861.1 similar to small heat shock protein; small heat shock protein 2157388 shsP 2780036 shsP Candidatus Protochlamydia amoebophila UWE25 small heat shock protein YP_008803.1 2156942 D 264201 CDS YP_008804.1 46447439 2781356 2157646..2158503 1 NC_005861.1 similar to zinc ABC transporter membrane protein; zinc ABC transporter membrane protein 2158503 znuA 2781356 znuA Candidatus Protochlamydia amoebophila UWE25 zinc ABC transporter membrane protein YP_008804.1 2157646 D 264201 CDS YP_008805.1 46447440 2781358 2158513..2159250 1 NC_005861.1 strongly similar to zinc ABC transporter ATP-binding protein; zinc ABC transporter ATP-binding protein 2159250 znuC 2781358 znuC Candidatus Protochlamydia amoebophila UWE25 zinc ABC transporter ATP-binding protein YP_008805.1 2158513 D 264201 CDS YP_008806.1 46447441 2781357 2159114..2160169 1 NC_005861.1 similar to zinc ABC transporter membrane protein; zinc ABC transporter membrane protein 2160169 znuB 2781357 znuB Candidatus Protochlamydia amoebophila UWE25 zinc ABC transporter membrane protein YP_008806.1 2159114 D 264201 CDS YP_008807.1 46447442 2780606 complement(2160420..2160773) 1 NC_005861.1 hypothetical protein 2160773 2780606 pc1808 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008807.1 2160420 R 264201 CDS YP_008808.1 46447443 2780677 complement(2161486..2162730) 1 NC_005861.1 similar to NADH2 dehydrogenase; NADH2 dehydrogenase 2162730 ndh 2780677 ndh Candidatus Protochlamydia amoebophila UWE25 NADH2 dehydrogenase YP_008808.1 2161486 R 264201 CDS YP_008809.1 46447444 2780109 2162991..2164436 1 NC_005861.1 unwinds double stranded DNA; replicative DNA helicase 2164436 dnaB 2780109 dnaB Candidatus Protochlamydia amoebophila UWE25 replicative DNA helicase YP_008809.1 2162991 D 264201 CDS YP_008810.1 46447445 2779993 2164774..2165235 1 NC_005861.1 hypothetical protein 2165235 2779993 pc1811 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008810.1 2164774 D 264201 CDS YP_008811.1 46447446 2779994 complement(2165644..2166735) 1 NC_005861.1 hypothetical protein 2166735 2779994 pc1812 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008811.1 2165644 R 264201 CDS YP_008812.1 46447447 2779995 complement(2167542..2168333) 1 NC_005861.1 hypothetical protein 2168333 2779995 pc1813 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008812.1 2167542 R 264201 CDS YP_008813.1 46447448 2781306 2168645..2169298 1 NC_005861.1 hypothetical protein 2169298 2781306 pc1814 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008813.1 2168645 D 264201 CDS YP_008814.1 46447449 2780879 complement(2169300..2170715) 1 NC_005861.1 similar to fibronectin/fibrinogen binding protein; fibronectin/fibrinogen binding protein 2170715 fbp 2780879 fbp Candidatus Protochlamydia amoebophila UWE25 fibronectin/fibrinogen binding protein YP_008814.1 2169300 R 264201 CDS YP_008815.1 46447450 2781307 complement(2170767..2172965) 1 NC_005861.1 hypothetical protein 2172965 2781307 pc1816 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008815.1 2170767 R 264201 CDS YP_008816.1 46447451 2781308 complement(2173103..2173363) 1 NC_005861.1 hypothetical protein 2173363 2781308 pc1817 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008816.1 2173103 R 264201 CDS YP_008817.1 46447452 2781309 complement(2173491..2173673) 1 NC_005861.1 hypothetical protein 2173673 2781309 pc1818 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008817.1 2173491 R 264201 CDS YP_008818.1 46447453 2779953 complement(2173907..2174185) 1 NC_005861.1 hypothetical protein 2174185 2779953 pc1819 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008818.1 2173907 R 264201 CDS YP_008819.1 46447454 2780085 complement(2174317..2175369) 1 NC_005861.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2175369 dinP 2780085 dinP Candidatus Protochlamydia amoebophila UWE25 DNA polymerase IV YP_008819.1 2174317 R 264201 CDS YP_008820.1 46447455 2779954 complement(2175546..2175983) 1 NC_005861.1 hypothetical protein 2175983 2779954 pc1821 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008820.1 2175546 R 264201 CDS YP_008821.1 46447456 2780793 complement(2176233..2177600) 1 NC_005861.1 similar to sodium/pantothenate symporter (pantothenate permease); sodium/pantothenate symporter (pantothenate permease) 2177600 panF 2780793 panF Candidatus Protochlamydia amoebophila UWE25 sodium/pantothenate symporter (pantothenate permease) YP_008821.1 2176233 R 264201 CDS YP_008822.1 46447457 2779955 complement(2178044..2178613) 1 NC_005861.1 hypothetical protein 2178613 2779955 pc1823 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008822.1 2178044 R 264201 CDS YP_008823.1 46447458 2781085 complement(2178812..2179630) 1 NC_005861.1 hypothetical protein 2179630 2781085 pc1824 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008823.1 2178812 R 264201 CDS YP_008824.1 46447459 2779541 complement(2179640..2181292) 1 NC_005861.1 similar to beta-N-acetylglucosaminidase; beta-N-acetylglucosaminidase 2181292 nagA 2779541 nagA Candidatus Protochlamydia amoebophila UWE25 beta-N-acetylglucosaminidase YP_008824.1 2179640 R 264201 CDS YP_008825.1 46447460 2781086 2181442..2182122 1 NC_005861.1 hypothetical protein 2182122 2781086 pc1826 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008825.1 2181442 D 264201 CDS YP_008826.1 46447461 2781087 complement(2182157..2183365) 1 NC_005861.1 hypothetical protein 2183365 2781087 pc1827 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008826.1 2182157 R 264201 CDS YP_008827.1 46447462 2779392 complement(2183561..2184496) 1 NC_005861.1 hypothetical protein 2184496 2779392 pc1828 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008827.1 2183561 R 264201 CDS YP_008828.1 46447463 2779393 2184720..2185190 1 NC_005861.1 hypothetical protein 2185190 2779393 pc1829 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008828.1 2184720 D 264201 CDS YP_008829.1 46447464 2779394 2185198..2186052 1 NC_005861.1 hypothetical protein 2186052 2779394 pc1830 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008829.1 2185198 D 264201 CDS YP_008830.1 46447465 2779395 2186049..2186726 1 NC_005861.1 hypothetical protein 2186726 2779395 pc1831 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008830.1 2186049 D 264201 CDS YP_008831.1 46447466 2781173 2187133..2188503 1 NC_005861.1 hypothetical protein 2188503 2781173 pc1832 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008831.1 2187133 D 264201 CDS YP_008832.1 46447467 2781174 2189234..2191720 1 NC_005861.1 hypothetical protein 2191720 2781174 pc1833 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008832.1 2189234 D 264201 CDS YP_008833.1 46447468 2779960 complement(2191751..2193181) 1 NC_005861.1 similar to DNA-3-methyladenine glycosidase II; DNA-3-methyladenine glycosidase II 2193181 alkA 2779960 alkA Candidatus Protochlamydia amoebophila UWE25 DNA-3-methyladenine glycosidase II YP_008833.1 2191751 R 264201 CDS YP_008834.1 46447469 2780452 2193352..2193873 1 NC_005861.1 similar to methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase 2193873 ada 2780452 ada Candidatus Protochlamydia amoebophila UWE25 methylated-DNA-[protein]-cysteine S-methyltransferase YP_008834.1 2193352 D 264201 CDS YP_008835.1 46447470 2780808 complement(2193932..2194567) 1 NC_005861.1 similar to histone H1-like protein; histone H1-like protein 2194567 hctB 2780808 hctB Candidatus Protochlamydia amoebophila UWE25 histone H1-like protein YP_008835.1 2193932 R 264201 CDS YP_008836.1 46447471 2781175 complement(2194835..2195251) 1 NC_005861.1 hypothetical protein 2195251 2781175 pc1837 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008836.1 2194835 R 264201 CDS YP_008837.1 46447472 2781440 complement(2195435..2196136) 1 NC_005861.1 similar to lipoate-protein ligase; lipoate-protein ligase 2196136 lplA 2781440 lplA Candidatus Protochlamydia amoebophila UWE25 lipoate-protein ligase YP_008837.1 2195435 R 264201 CDS YP_008838.1 46447473 2780896 complement(2196161..2198038) 1 NC_005861.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2198038 gidA 2780896 gidA Candidatus Protochlamydia amoebophila UWE25 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_008838.1 2196161 R 264201 CDS YP_008839.1 46447474 2779543 complement(2198992..2200545) 1 NC_005861.1 hypothetical protein 2200545 2779543 pc1840 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008839.1 2198992 R 264201 CDS YP_008840.1 46447475 2780018 complement(2200648..2201421) 1 NC_005861.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2201421 sdhB 2780018 sdhB Candidatus Protochlamydia amoebophila UWE25 succinate dehydrogenase iron-sulfur subunit YP_008840.1 2200648 R 264201 CDS YP_008841.1 46447476 2779742 complement(2201436..2203319) 1 NC_005861.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2203319 sdhA 2779742 sdhA Candidatus Protochlamydia amoebophila UWE25 succinate dehydrogenase flavoprotein subunit YP_008841.1 2201436 R 264201 CDS YP_008842.1 46447477 2780019 complement(2203334..2204296) 1 NC_005861.1 similar to succinate dehydrogenase cytochrome b558; succinate dehydrogenase cytochrome b558 2204296 sdhC 2780019 sdhC Candidatus Protochlamydia amoebophila UWE25 succinate dehydrogenase cytochrome b558 YP_008842.1 2203334 R 264201 CDS YP_008843.1 46447478 2781401 complement(2204540..2205337) 1 NC_005861.1 similar to deoxyribonuclease TatD; deoxyribonuclease TatD 2205337 tatD 2781401 tatD Candidatus Protochlamydia amoebophila UWE25 deoxyribonuclease TatD YP_008843.1 2204540 R 264201 CDS YP_008844.1 46447479 2780696 complement(2205325..2207568) 1 NC_005861.1 similar to thiol-disulfide interchange protein; thiol-disulfide interchange protein 2207568 dsbD 2780696 dsbD Candidatus Protochlamydia amoebophila UWE25 thiol-disulfide interchange protein YP_008844.1 2205325 R 264201 CDS YP_008845.1 46447480 2779544 2207561..2207758 1 NC_005861.1 hypothetical protein 2207758 2779544 pc1846 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008845.1 2207561 D 264201 CDS YP_008846.1 46447481 2781093 2207959..2208711 1 NC_005861.1 similar to TolQ protein; TolQ protein 2208711 tolQ 2781093 tolQ Candidatus Protochlamydia amoebophila UWE25 TolQ protein YP_008846.1 2207959 D 264201 CDS YP_008847.1 46447482 2781094 2208726..2209154 1 NC_005861.1 similar to TolR protein; TolR protein 2209154 tolR 2781094 tolR Candidatus Protochlamydia amoebophila UWE25 TolR protein YP_008847.1 2208726 D 264201 CDS YP_008848.1 46447483 2780329 2209164..2210231 1 NC_005861.1 similar to tolA protein of Tol-Pal system; tolA protein of Tol-Pal system 2210231 tolA 2780329 tolA Candidatus Protochlamydia amoebophila UWE25 tolA protein of Tol-Pal system YP_008848.1 2209164 D 264201 CDS YP_008849.1 46447484 2781091 2210293..2211702 1 NC_005861.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 2211702 tolB 2781091 tolB Candidatus Protochlamydia amoebophila UWE25 translocation protein TolB YP_008849.1 2210293 D 264201 CDS YP_008850.1 46447485 2780792 2212004..2212744 1 NC_005861.1 strongly similar to peptidoglycan-associated lipoprotein precursor (pal); peptidoglycan-associated lipoprotein (pal) 2212744 pal 2780792 pal Candidatus Protochlamydia amoebophila UWE25 peptidoglycan-associated lipoprotein (pal) YP_008850.1 2212004 D 264201 CDS YP_008851.1 46447486 2779545 2212734..2213453 1 NC_005861.1 hypothetical protein 2213453 2779545 pc1852 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008851.1 2212734 D 264201 CDS YP_008852.1 46447487 2780522 2213529..2214278 1 NC_005861.1 strongly similar to glutamate racemase; glutamate racemase 2214278 murI 2780522 murI Candidatus Protochlamydia amoebophila UWE25 glutamate racemase YP_008852.1 2213529 D 264201 CDS YP_008853.1 46447488 2779546 complement(2214626..2214976) 1 NC_005861.1 hypothetical protein 2214976 2779546 pc1854 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008853.1 2214626 R 264201 CDS YP_008854.1 46447489 2779835 complement(2215139..2215828) 1 NC_005861.1 similar to two-component response regulator phoP; two-component response regulator phoP 2215828 phoB 2779835 phoB Candidatus Protochlamydia amoebophila UWE25 two-component response regulator phoP YP_008854.1 2215139 R 264201 CDS YP_008855.1 46447490 2779944 2216282..2217214 1 NC_005861.1 hypothetical protein 2217214 2779944 pc1856 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008855.1 2216282 D 264201 CDS YP_008856.1 46447491 2779945 2217298..2218329 1 NC_005861.1 hypothetical protein 2218329 2779945 pc1857 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008856.1 2217298 D 264201 CDS YP_008857.1 46447492 2779946 2218377..2219648 1 NC_005861.1 hypothetical protein 2219648 2779946 pc1858 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008857.1 2218377 D 264201 CDS YP_008858.1 46447493 2780514 2219638..2220234 1 NC_005861.1 hypothetical protein 2220234 2780514 pc1859 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008858.1 2219638 D 264201 CDS YP_008859.1 46447494 2780515 2220564..2221541 1 NC_005861.1 hypothetical protein 2221541 2780515 pc1860 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008859.1 2220564 D 264201 CDS YP_008860.1 46447495 2780516 complement(2221636..2222838) 1 NC_005861.1 hypothetical protein 2222838 2780516 pc1861 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008860.1 2221636 R 264201 CDS YP_008861.1 46447496 2780176 2223109..2223603 1 NC_005861.1 hypothetical protein 2223603 2780176 pc1862 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008861.1 2223109 D 264201 CDS YP_008862.1 46447497 2780177 2223637..2224077 1 NC_005861.1 hypothetical protein 2224077 2780177 pc1863 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008862.1 2223637 D 264201 CDS YP_008863.1 46447498 2780178 2224106..2224738 1 NC_005861.1 hypothetical protein 2224738 2780178 pc1864 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008863.1 2224106 D 264201 CDS YP_008864.1 46447499 2780179 2224854..2225714 1 NC_005861.1 hypothetical protein 2225714 2780179 pc1865 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008864.1 2224854 D 264201 CDS YP_008865.1 46447500 2780850 2225721..2226617 1 NC_005861.1 hypothetical protein 2226617 2780850 pc1866 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008865.1 2225721 D 264201 CDS YP_008866.1 46447501 2780851 complement(2226625..2227272) 1 NC_005861.1 hypothetical protein 2227272 2780851 pc1867 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008866.1 2226625 R 264201 CDS YP_008867.1 46447502 2780852 2227444..2228214 1 NC_005861.1 hypothetical protein 2228214 2780852 pc1868 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008867.1 2227444 D 264201 CDS YP_008868.1 46447503 2780300 2228252..2228899 1 NC_005861.1 similar to phosphoglycerate mutase; phosphoglycerate mutase 2228899 2780300 pc1869 Candidatus Protochlamydia amoebophila UWE25 phosphoglycerate mutase YP_008868.1 2228252 D 264201 CDS YP_008869.1 46447504 2780301 2229760..2231310 1 NC_005861.1 hypothetical protein 2231310 2780301 pc1870 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008869.1 2229760 D 264201 CDS YP_008870.1 46447505 2780302 2231394..2231885 1 NC_005861.1 hypothetical protein 2231885 2780302 pc1871 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008870.1 2231394 D 264201 CDS YP_008871.1 46447506 2780303 2232454..2232693 1 NC_005861.1 hypothetical protein 2232693 2780303 pc1872 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008871.1 2232454 D 264201 CDS YP_008872.1 46447507 2780119 complement(2233042..2234136) 1 NC_005861.1 hypothetical protein 2234136 2780119 pc1873 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008872.1 2233042 R 264201 CDS YP_008873.1 46447508 2780120 complement(2234147..2235136) 1 NC_005861.1 similar to arginine kinase; ATP:guanido phosphotransferase 2235136 2780120 pc1874 Candidatus Protochlamydia amoebophila UWE25 ATP:guanido phosphotransferase YP_008873.1 2234147 R 264201 CDS YP_008874.1 46447509 2780121 complement(2235207..2235785) 1 NC_005861.1 hypothetical protein 2235785 2780121 pc1875 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008874.1 2235207 R 264201 CDS YP_008875.1 46447510 2781135 complement(2236436..2236987) 1 NC_005861.1 similar to ribosome recycling factor (ribosome releasing factor); ribosome recycling factor (ribosome releasing factor) 2236987 rrf 2781135 rrf Candidatus Protochlamydia amoebophila UWE25 ribosome recycling factor (ribosome releasing factor) YP_008875.1 2236436 R 264201 CDS YP_008876.1 46447511 2781391 complement(2236999..2237754) 1 NC_005861.1 strongly similar to uridylate kinase; uridylate kinase 2237754 pyrH 2781391 pyrH Candidatus Protochlamydia amoebophila UWE25 uridylate kinase YP_008876.1 2236999 R 264201 CDS YP_008877.1 46447512 2780211 complement(2238592..2239479) 1 NC_005861.1 similar to procollagen-lysine 5-dioxygenase; procollagen-lysine 5-dioxygenase 2239479 2780211 pc1878 Candidatus Protochlamydia amoebophila UWE25 procollagen-lysine 5-dioxygenase YP_008877.1 2238592 R 264201 CDS YP_008878.1 46447513 2780212 complement(2239542..2240627) 1 NC_005861.1 hypothetical protein 2240627 2780212 pc1879 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008878.1 2239542 R 264201 CDS YP_008879.1 46447514 2780213 2240785..2241783 1 NC_005861.1 similar to X-Pro dipeptidase; X-Pro dipeptidase 2241783 2780213 pc1880 Candidatus Protochlamydia amoebophila UWE25 X-Pro dipeptidase YP_008879.1 2240785 D 264201 CDS YP_008880.1 46447515 2779837 2241946..2243715 1 NC_005861.1 similar to two-component sensor histidine kinase phoR; two-component sensor histidine kinase phoR 2243715 phoR 2779837 phoR Candidatus Protochlamydia amoebophila UWE25 two-component sensor histidine kinase phoR YP_008880.1 2241946 D 264201 CDS YP_008881.1 46447516 2780245 2243779..2244774 1 NC_005861.1 hypothetical protein 2244774 2780245 pc1882 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008881.1 2243779 D 264201 CDS YP_008882.1 46447517 2780246 2244771..2245649 1 NC_005861.1 hypothetical protein 2245649 2780246 pc1883 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008882.1 2244771 D 264201 CDS YP_008883.1 46447518 2780247 2245646..2246740 1 NC_005861.1 hypothetical protein 2246740 2780247 pc1884 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008883.1 2245646 D 264201 CDS YP_008884.1 46447519 2780248 complement(2246988..2247641) 1 NC_005861.1 hypothetical protein 2247641 2780248 pc1885 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008884.1 2246988 R 264201 CDS YP_008885.1 46447520 2780223 complement(2247817..2248926) 1 NC_005861.1 hypothetical protein 2248926 2780223 pc1886 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008885.1 2247817 R 264201 CDS YP_008886.1 46447521 2780224 complement(2248936..2250063) 1 NC_005861.1 hypothetical protein 2250063 2780224 pc1887 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008886.1 2248936 R 264201 CDS YP_008887.1 46447522 2780225 complement(2250060..2251790) 1 NC_005861.1 hypothetical protein 2251790 2780225 pc1888 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008887.1 2250060 R 264201 CDS YP_008888.1 46447523 2779844 complement(2251787..2252635) 1 NC_005861.1 hypothetical protein 2252635 2779844 pc1889 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008888.1 2251787 R 264201 CDS YP_008889.1 46447524 2779845 complement(2252757..2253728) 1 NC_005861.1 hypothetical protein 2253728 2779845 pc1890 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008889.1 2252757 R 264201 CDS YP_008890.1 46447525 2779846 complement(2253784..2254668) 1 NC_005861.1 hypothetical protein 2254668 2779846 pc1891 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008890.1 2253784 R 264201 CDS YP_008891.1 46447526 2779847 complement(2254613..2255410) 1 NC_005861.1 hypothetical protein 2255410 2779847 pc1892 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008891.1 2254613 R 264201 CDS YP_008892.1 46447527 2781447 complement(2255379..2255945) 1 NC_005861.1 hypothetical protein 2255945 2781447 pc1893 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008892.1 2255379 R 264201 CDS YP_008893.1 46447528 2781448 complement(2255905..2256492) 1 NC_005861.1 hypothetical protein 2256492 2781448 pc1894 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008893.1 2255905 R 264201 CDS YP_008894.1 46447529 2781449 complement(2256493..2256897) 1 NC_005861.1 hypothetical protein 2256897 2781449 pc1895 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008894.1 2256493 R 264201 CDS YP_008895.1 46447530 2779914 complement(2256916..2258103) 1 NC_005861.1 similar to protein of the general secretion pathway; protein of the general secretion pathway 2258103 gspF 2779914 gspF Candidatus Protochlamydia amoebophila UWE25 protein of the general secretion pathway YP_008895.1 2256916 R 264201 CDS YP_008896.1 46447531 2779913 complement(2258106..2259737) 1 NC_005861.1 strongly similar to protein of the general secretion pathway; general secretion pathway protein 2259737 gspE 2779913 gspE Candidatus Protochlamydia amoebophila UWE25 general secretion pathway protein YP_008896.1 2258106 R 264201 CDS YP_008897.1 46447532 2779611 complement(2259724..2262213) 1 NC_005861.1 similar to protein of the general secretion pathway; protein of the general secretion pathway 2262213 gspD 2779611 gspD Candidatus Protochlamydia amoebophila UWE25 protein of the general secretion pathway YP_008897.1 2259724 R 264201 CDS YP_008898.1 46447533 2781279 complement(2262376..2263794) 1 NC_005861.1 hypothetical protein 2263794 2781279 pc1899 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008898.1 2262376 R 264201 CDS YP_008899.1 46447534 2781280 2264109..2264633 1 NC_005861.1 hypothetical protein 2264633 2781280 pc1900 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008899.1 2264109 D 264201 CDS YP_008900.1 46447535 2780142 complement(2264714..2266192) 1 NC_005861.1 similar to RNA polymerase sigma-54 factor (sigma-N); RNA polymerase sigma-54 factor (sigma-N) 2266192 rpoN 2780142 rpoN Candidatus Protochlamydia amoebophila UWE25 RNA polymerase sigma-54 factor (sigma-N) YP_008900.1 2264714 R 264201 CDS YP_008901.1 46447536 2781281 complement(2267094..2267333) 1 NC_005861.1 hypothetical protein 2267333 2781281 pc1902 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008901.1 2267094 R 264201 CDS YP_008902.1 46447537 2780880 complement(2267377..2267805) 1 NC_005861.1 hypothetical protein 2267805 2780880 pc1903 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008902.1 2267377 R 264201 CDS YP_008903.1 46447538 2780881 complement(2267806..2268066) 1 NC_005861.1 hypothetical protein 2268066 2780881 pc1904 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008903.1 2267806 R 264201 CDS YP_008904.1 46447539 2780882 2268054..2268260 1 NC_005861.1 hypothetical protein 2268260 2780882 pc1905 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008904.1 2268054 D 264201 CDS YP_008905.1 46447540 2780883 complement(2268698..2269183) 1 NC_005861.1 hypothetical protein 2269183 2780883 pc1906 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008905.1 2268698 R 264201 CDS YP_008906.1 46447541 2780415 2269528..2269797 1 NC_005861.1 hypothetical protein 2269797 2780415 pc1907 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008906.1 2269528 D 264201 CDS YP_008907.1 46447542 2780416 2269804..2269995 1 NC_005861.1 hypothetical protein 2269995 2780416 pc1908 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008907.1 2269804 D 264201 CDS YP_008908.1 46447543 2780417 2270490..2271284 1 NC_005861.1 hypothetical protein 2271284 2780417 pc1909 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008908.1 2270490 D 264201 CDS YP_008909.1 46447544 2780889 2271281..2272237 1 NC_005861.1 hypothetical protein 2272237 2780889 pc1910 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008909.1 2271281 D 264201 CDS YP_008910.1 46447545 2780890 2272463..2272684 1 NC_005861.1 hypothetical protein 2272684 2780890 pc1911 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008910.1 2272463 D 264201 CDS YP_008911.1 46447546 2780891 complement(2273476..2273742) 1 NC_005861.1 hypothetical protein 2273742 2780891 pc1912 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008911.1 2273476 R 264201 CDS YP_008912.1 46447547 2780892 complement(2273735..2274001) 1 NC_005861.1 hypothetical protein 2274001 2780892 pc1913 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008912.1 2273735 R 264201 CDS YP_008913.1 46447548 2779923 2274539..2276125 1 NC_005861.1 hypothetical protein 2276125 2779923 pc1914 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008913.1 2274539 D 264201 CDS YP_008914.1 46447549 2779924 2276615..2278666 1 NC_005861.1 hypothetical protein 2278666 2779924 pc1915 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008914.1 2276615 D 264201 CDS YP_008915.1 46447550 2779925 2279612..2280544 1 NC_005861.1 hypothetical protein 2280544 2779925 pc1916 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008915.1 2279612 D 264201 CDS YP_008916.1 46447551 2780320 complement(2280713..2280961) 1 NC_005861.1 hypothetical protein 2280961 2780320 pc1917 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008916.1 2280713 R 264201 CDS YP_008917.1 46447552 2780321 complement(2281953..2283611) 1 NC_005861.1 hypothetical protein 2283611 2780321 pc1918 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008917.1 2281953 R 264201 CDS YP_008918.1 46447553 2780322 complement(2284437..2284730) 1 NC_005861.1 hypothetical protein 2284730 2780322 pc1919 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008918.1 2284437 R 264201 CDS YP_008919.1 46447554 2780323 complement(2284703..2286256) 1 NC_005861.1 hypothetical protein 2286256 2780323 pc1920 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008919.1 2284703 R 264201 CDS YP_008920.1 46447555 2781347 complement(2286661..2286951) 1 NC_005861.1 hypothetical protein 2286951 2781347 pc1921 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008920.1 2286661 R 264201 CDS YP_008921.1 46447556 2781348 2287548..2287862 1 NC_005861.1 hypothetical protein 2287862 2781348 pc1922 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008921.1 2287548 D 264201 CDS YP_008922.1 46447557 2781349 2287831..2288109 1 NC_005861.1 hypothetical protein 2288109 2781349 pc1923 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008922.1 2287831 D 264201 CDS YP_008923.1 46447558 2780122 2289623..2291149 1 NC_005861.1 hypothetical protein 2291149 2780122 pc1924 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008923.1 2289623 D 264201 CDS YP_008924.1 46447559 2780123 2291729..2292181 1 NC_005861.1 strongly similar to endonuclease G, mitochondrial precursor; endonuclease G, mitochondrial 2292181 2780123 pc1925 Candidatus Protochlamydia amoebophila UWE25 endonuclease G, mitochondrial YP_008924.1 2291729 D 264201 CDS YP_008925.1 46447560 2780124 2292758..2295043 1 NC_005861.1 hypothetical protein 2295043 2780124 pc1926 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008925.1 2292758 D 264201 CDS YP_008926.1 46447561 2780125 2295124..2295453 1 NC_005861.1 hypothetical protein 2295453 2780125 pc1927 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008926.1 2295124 D 264201 CDS YP_008927.1 46447562 2781007 2296169..2297755 1 NC_005861.1 hypothetical protein 2297755 2781007 pc1928 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008927.1 2296169 D 264201 CDS YP_008928.1 46447563 2781008 complement(2297918..2298277) 1 NC_005861.1 hypothetical protein 2298277 2781008 pc1929 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008928.1 2297918 R 264201 CDS YP_008929.1 46447564 2781009 complement(2298379..2298708) 1 NC_005861.1 hypothetical protein 2298708 2781009 pc1930 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008929.1 2298379 R 264201 CDS YP_008930.1 46447565 2780959 complement(2298766..2299356) 1 NC_005861.1 hypothetical protein 2299356 2780959 pc1931 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008930.1 2298766 R 264201 CDS YP_008931.1 46447566 2780960 complement(2299360..2299608) 1 NC_005861.1 hypothetical protein 2299608 2780960 pc1932 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008931.1 2299360 R 264201 CDS YP_008932.1 46447567 2780961 2299768..2300016 1 NC_005861.1 hypothetical protein 2300016 2780961 pc1933 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008932.1 2299768 D 264201 CDS YP_008933.1 46447568 2780962 complement(2300856..2301641) 1 NC_005861.1 hypothetical protein 2301641 2780962 pc1934 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008933.1 2300856 R 264201 CDS YP_008934.1 46447569 2781044 complement(2301641..2303155) 1 NC_005861.1 hypothetical protein 2303155 2781044 pc1935 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008934.1 2301641 R 264201 CDS YP_008935.1 46447570 2781045 complement(2303617..2304747) 1 NC_005861.1 hypothetical protein 2304747 2781045 pc1936 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008935.1 2303617 R 264201 CDS YP_008936.1 46447571 2781046 2305622..2306311 1 NC_005861.1 hypothetical protein 2306311 2781046 pc1937 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008936.1 2305622 D 264201 CDS YP_008937.1 46447572 2779403 complement(2306583..2306882) 1 NC_005861.1 hypothetical protein 2306882 2779403 pc1938 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008937.1 2306583 R 264201 CDS YP_008938.1 46447573 2779404 complement(2306869..2307153) 1 NC_005861.1 hypothetical protein 2307153 2779404 pc1939 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008938.1 2306869 R 264201 CDS YP_008939.1 46447574 2779405 2307234..2307437 1 NC_005861.1 hypothetical protein 2307437 2779405 pc1940 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008939.1 2307234 D 264201 CDS YP_008940.1 46447575 2779406 2307421..2307618 1 NC_005861.1 hypothetical protein 2307618 2779406 pc1941 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008940.1 2307421 D 264201 CDS YP_008941.1 46447576 2781168 complement(2307592..2307801) 1 NC_005861.1 hypothetical protein 2307801 2781168 pc1942 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008941.1 2307592 R 264201 CDS YP_008942.1 46447577 2781169 complement(2308010..2308225) 1 NC_005861.1 hypothetical protein 2308225 2781169 pc1943 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008942.1 2308010 R 264201 CDS YP_008943.1 46447578 2781170 complement(2308479..2311487) 1 NC_005861.1 hypothetical protein 2311487 2781170 pc1944 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008943.1 2308479 R 264201 CDS YP_008944.1 46447579 2780963 2311956..2312249 1 NC_005861.1 hypothetical protein 2312249 2780963 pc1945 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008944.1 2311956 D 264201 CDS YP_008945.1 46447580 2780964 2312588..2313976 1 NC_005861.1 hypothetical protein 2313976 2780964 pc1946 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008945.1 2312588 D 264201 CDS YP_008946.1 46447581 2780965 complement(2313992..2316535) 1 NC_005861.1 hypothetical protein 2316535 2780965 pc1947 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008946.1 2313992 R 264201 CDS YP_008947.1 46447582 2780966 2317349..2317600 1 NC_005861.1 hypothetical protein 2317600 2780966 pc1948 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008947.1 2317349 D 264201 CDS YP_008948.1 46447583 2781041 complement(2317694..2317912) 1 NC_005861.1 hypothetical protein 2317912 2781041 pc1949 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008948.1 2317694 R 264201 CDS YP_008949.1 46447584 2781042 complement(2318137..2318319) 1 NC_005861.1 hypothetical protein 2318319 2781042 pc1950 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008949.1 2318137 R 264201 CDS YP_008950.1 46447585 2781043 2318749..2319084 1 NC_005861.1 strongly similar to metalloproteinase; metalloproteinase 2319084 2781043 pc1951 Candidatus Protochlamydia amoebophila UWE25 metalloproteinase YP_008950.1 2318749 D 264201 CDS YP_008951.1 46447586 2780550 2319305..2320414 1 NC_005861.1 hypothetical protein 2320414 2780550 pc1952 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008951.1 2319305 D 264201 CDS YP_008952.1 46447587 2780551 complement(2320619..2321038) 1 NC_005861.1 hypothetical protein 2321038 2780551 pc1953 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008952.1 2320619 R 264201 CDS YP_008953.1 46447588 2780552 complement(2321877..2323991) 1 NC_005861.1 hypothetical protein 2323991 2780552 pc1954 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008953.1 2321877 R 264201 CDS YP_008954.1 46447589 2780553 complement(2324633..2325997) 1 NC_005861.1 hypothetical protein 2325997 2780553 pc1955 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008954.1 2324633 R 264201 CDS YP_008955.1 46447590 2781066 complement(2326645..2328624) 1 NC_005861.1 hypothetical protein 2328624 2781066 pc1956 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008955.1 2326645 R 264201 CDS YP_008956.1 46447591 2781067 2329502..2332936 1 NC_005861.1 hypothetical protein 2332936 2781067 pc1957 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008956.1 2329502 D 264201 CDS YP_008957.1 46447592 2781068 complement(2333167..2334627) 1 NC_005861.1 similar to metalloproteinase; metalloproteinase 2334627 2781068 pc1958 Candidatus Protochlamydia amoebophila UWE25 metalloproteinase YP_008957.1 2333167 R 264201 CDS YP_008958.1 46447593 2780259 complement(2335054..2335311) 1 NC_005861.1 hypothetical protein 2335311 2780259 pc1959 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008958.1 2335054 R 264201 CDS YP_008959.1 46447594 2780260 2336067..2337143 1 NC_005861.1 hypothetical protein 2337143 2780260 pc1960 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008959.1 2336067 D 264201 CDS YP_008960.1 46447595 2780261 complement(2337716..2338819) 1 NC_005861.1 hypothetical protein 2338819 2780261 pc1961 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008960.1 2337716 R 264201 CDS YP_008961.1 46447596 2780262 2338950..2339327 1 NC_005861.1 hypothetical protein 2339327 2780262 pc1962 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008961.1 2338950 D 264201 CDS YP_008962.1 46447597 2780562 2339342..2340154 1 NC_005861.1 hypothetical protein 2340154 2780562 pc1963 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008962.1 2339342 D 264201 CDS YP_008963.1 46447598 2780563 complement(2340151..2340372) 1 NC_005861.1 hypothetical protein 2340372 2780563 pc1964 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008963.1 2340151 R 264201 CDS YP_008964.1 46447599 2780564 complement(2340693..2341673) 1 NC_005861.1 similar to metalloproteinase; metalloproteinase 2341673 2780564 pc1965 Candidatus Protochlamydia amoebophila UWE25 metalloproteinase YP_008964.1 2340693 R 264201 CDS YP_008965.1 46447600 2780992 complement(2342123..2345971) 1 NC_005861.1 hypothetical protein 2345971 2780992 pc1966 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008965.1 2342123 R 264201 CDS YP_008966.1 46447601 2780993 2346042..2346227 1 NC_005861.1 hypothetical protein 2346227 2780993 pc1967 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008966.1 2346042 D 264201 CDS YP_008967.1 46447602 2780994 2346419..2347696 1 NC_005861.1 hypothetical protein 2347696 2780994 pc1968 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008967.1 2346419 D 264201 CDS YP_008968.1 46447603 2780995 2348254..2348481 1 NC_005861.1 hypothetical protein 2348481 2780995 pc1969 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008968.1 2348254 D 264201 CDS YP_008969.1 46447604 2780989 2348785..2350086 1 NC_005861.1 hypothetical protein 2350086 2780989 pc1970 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008969.1 2348785 D 264201 CDS YP_008970.1 46447605 2780990 complement(2350735..2351406) 1 NC_005861.1 hypothetical protein 2351406 2780990 pc1971 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008970.1 2350735 R 264201 CDS YP_008971.1 46447606 2780991 2351635..2353578 1 NC_005861.1 hypothetical protein 2353578 2780991 pc1972 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008971.1 2351635 D 264201 CDS YP_008972.1 46447607 2780996 2353687..2353902 1 NC_005861.1 hypothetical protein 2353902 2780996 pc1973 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008972.1 2353687 D 264201 CDS YP_008973.1 46447608 2780997 complement(2353914..2354600) 1 NC_005861.1 hypothetical protein 2354600 2780997 pc1974 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008973.1 2353914 R 264201 CDS YP_008974.1 46447609 2781262 complement(2354640..2355440) 1 NC_005861.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2355440 hemF 2781262 hemF Candidatus Protochlamydia amoebophila UWE25 coproporphyrinogen III oxidase YP_008974.1 2354640 R 264201 CDS YP_008975.1 46447610 2780998 complement(2356218..2356511) 1 NC_005861.1 hypothetical protein 2356511 2780998 pc1976 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008975.1 2356218 R 264201 CDS YP_008976.1 46447611 2780496 complement(2356704..2357951) 1 NC_005861.1 similar to cytochrome-c oxidase fixO chain; cytochrome-c oxidase fixO chain 2357951 fixO 2780496 fixO Candidatus Protochlamydia amoebophila UWE25 cytochrome-c oxidase fixO chain YP_008976.1 2356704 R 264201 CDS YP_008977.1 46447612 2780495 complement(2358011..2359426) 1 NC_005861.1 similar to cytochrome-c oxidase fixN chain; cytochrome-c oxidase fixN chain 2359426 fixN 2780495 fixN Candidatus Protochlamydia amoebophila UWE25 cytochrome-c oxidase fixN chain YP_008977.1 2358011 R 264201 CDS YP_008978.1 46447613 2780999 complement(2359632..2359865) 1 NC_005861.1 hypothetical protein 2359865 2780999 pc1979 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008978.1 2359632 R 264201 CDS YP_008979.1 46447614 2780689 2360301..2360522 1 NC_005861.1 hypothetical protein 2360522 2780689 pc1980 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008979.1 2360301 D 264201 CDS YP_008980.1 46447615 2780690 2360965..2361525 1 NC_005861.1 hypothetical protein 2361525 2780690 pc1981 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008980.1 2360965 D 264201 CDS YP_008981.1 46447616 2780691 complement(2361598..2362713) 1 NC_005861.1 hypothetical protein 2362713 2780691 pc1982 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008981.1 2361598 R 264201 CDS YP_008982.1 46447617 2781400 complement(2362779..2363438) 1 NC_005861.1 similar to transaldolase; transaldolase 2363438 talB 2781400 talB Candidatus Protochlamydia amoebophila UWE25 transaldolase YP_008982.1 2362779 R 264201 CDS YP_008983.1 46447618 2780030 complement(2363677..2366031) 1 NC_005861.1 hypothetical protein 2366031 2780030 pc1984 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008983.1 2363677 R 264201 CDS YP_008984.1 46447619 2780031 complement(2366306..2367910) 1 NC_005861.1 hypothetical protein 2367910 2780031 pc1985 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008984.1 2366306 R 264201 CDS YP_008985.1 46447620 2780032 complement(2368068..2368730) 1 NC_005861.1 hypothetical protein 2368730 2780032 pc1986 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008985.1 2368068 R 264201 CDS YP_008986.1 46447621 2780033 complement(2368949..2369842) 1 NC_005861.1 hypothetical protein 2369842 2780033 pc1987 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008986.1 2368949 R 264201 CDS YP_008987.1 46447622 2779655 complement(2369983..2370258) 1 NC_005861.1 hypothetical protein 2370258 2779655 pc1988 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008987.1 2369983 R 264201 CDS YP_008988.1 46447623 2779656 2370469..2372046 1 NC_005861.1 hypothetical protein 2372046 2779656 pc1989 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008988.1 2370469 D 264201 CDS YP_008989.1 46447624 2779657 2372049..2372672 1 NC_005861.1 hypothetical protein 2372672 2779657 pc1990 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008989.1 2372049 D 264201 CDS YP_008990.1 46447625 2779584 2372696..2373970 1 NC_005861.1 hypothetical protein 2373970 2779584 pc1991 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008990.1 2372696 D 264201 CDS YP_008991.1 46447626 2779585 2373951..2375564 1 NC_005861.1 hypothetical protein 2375564 2779585 pc1992 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008991.1 2373951 D 264201 CDS YP_008992.1 46447627 2779586 2375570..2375959 1 NC_005861.1 hypothetical protein 2375959 2779586 pc1993 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008992.1 2375570 D 264201 CDS YP_008993.1 46447628 2779587 2376295..2376597 1 NC_005861.1 hypothetical protein 2376597 2779587 pc1994 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008993.1 2376295 D 264201 CDS YP_008994.1 46447629 2779801 2376732..2377817 1 NC_005861.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2377817 recA 2779801 recA Candidatus Protochlamydia amoebophila UWE25 recombinase A YP_008994.1 2376732 D 264201 CDS YP_008995.1 46447630 2780540 complement(2377971..2378780) 1 NC_005861.1 similar to geranyltranstransferase; geranyltranstransferase 2378780 ispA 2780540 ispA Candidatus Protochlamydia amoebophila UWE25 geranyltranstransferase YP_008995.1 2377971 R 264201 CDS YP_008996.1 46447631 2780379 complement(2379041..2379721) 1 NC_005861.1 similar to UDP-N-acetylglucosamine diphosphorylase; UDP-N-acetylglucosamine diphosphorylase 2379721 glmU 2780379 glmU Candidatus Protochlamydia amoebophila UWE25 UDP-N-acetylglucosamine diphosphorylase YP_008996.1 2379041 R 264201 CDS YP_008997.1 46447632 2779575 2380126..2381277 1 NC_005861.1 similar to 23S rRNA (Uracil-5-)-methyltransferase; 23S rRNA (Uracil-5-)-methyltransferase 2381277 rumA 2779575 rumA Candidatus Protochlamydia amoebophila UWE25 23S rRNA (Uracil-5-)-methyltransferase YP_008997.1 2380126 D 264201 CDS YP_008998.1 46447633 2780598 2381396..2382085 1 NC_005861.1 strongly similar to mgtC protein; mgtC protein 2382085 mgtC 2780598 mgtC Candidatus Protochlamydia amoebophila UWE25 mgtC protein YP_008998.1 2381396 D 264201 CDS YP_008999.1 46447634 2779465 complement(2382875..2383123) 1 NC_005861.1 hypothetical protein 2383123 2779465 pc2000 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_008999.1 2382875 R 264201 CDS YP_009000.1 46447635 2779466 complement(2383335..2384204) 1 NC_005861.1 hypothetical protein 2384204 2779466 pc2001 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009000.1 2383335 R 264201 CDS YP_009001.1 46447636 2779467 complement(2384192..2384785) 1 NC_005861.1 hypothetical protein 2384785 2779467 pc2002 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009001.1 2384192 R 264201 CDS YP_009002.1 46447637 2780717 complement(2384841..2385404) 1 NC_005861.1 hypothetical protein 2385404 2780717 pc2003 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009002.1 2384841 R 264201 CDS YP_009003.1 46447638 2780414 complement(2385436..2386221) 1 NC_005861.1 hypothetical protein 2386221 cbbY 2780414 cbbY Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009003.1 2385436 R 264201 CDS YP_009004.1 46447639 2780718 2386243..2386434 1 NC_005861.1 hypothetical protein 2386434 2780718 pc2005 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009004.1 2386243 D 264201 CDS YP_009005.1 46447640 2780719 complement(2386438..2386965) 1 NC_005861.1 hypothetical protein 2386965 2780719 pc2006 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009005.1 2386438 R 264201 CDS YP_009006.1 46447641 2780720 complement(2387049..2387351) 1 NC_005861.1 hypothetical protein 2387351 2780720 pc2007 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009006.1 2387049 R 264201 CDS YP_009007.1 46447642 2779501 complement(2387591..2387839) 1 NC_005861.1 hypothetical protein 2387839 2779501 pc2008 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009007.1 2387591 R 264201 CDS YP_009008.1 46447643 2779502 complement(2387889..2388488) 1 NC_005861.1 hypothetical protein 2388488 2779502 pc2009 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009008.1 2387889 R 264201 CDS YP_009009.1 46447644 2779503 complement(2389663..2390037) 1 NC_005861.1 hypothetical protein 2390037 2779503 pc2010 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009009.1 2389663 R 264201 CDS YP_009010.1 46447645 2780724 complement(2390316..2390648) 1 NC_005861.1 hypothetical protein 2390648 2780724 pc2011 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009010.1 2390316 R 264201 CDS YP_009011.1 46447646 2781456 complement(2390751..2391461) 1 NC_005861.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 2391461 ung 2781456 ung Candidatus Protochlamydia amoebophila UWE25 uracil-DNA glycosylase YP_009011.1 2390751 R 264201 CDS YP_009012.1 46447647 2780725 complement(2391461..2392198) 1 NC_005861.1 hypothetical protein 2392198 2780725 pc2013 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009012.1 2391461 R 264201 CDS YP_009013.1 46447648 2780862 complement(2392264..2393016) 1 NC_005861.1 similar to partition protein; partition protein 2393016 parA 2780862 parA Candidatus Protochlamydia amoebophila UWE25 partition protein YP_009013.1 2392264 R 264201 CDS YP_009014.1 46447649 2779714 complement(2393020..2394972) 1 NC_005861.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2394972 thrS 2779714 thrS Candidatus Protochlamydia amoebophila UWE25 threonyl-tRNA synthetase YP_009014.1 2393020 R 264201 CDS YP_009015.1 46447650 2780726 2395680..2395880 1 NC_005861.1 hypothetical protein 2395880 2780726 pc2016 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009015.1 2395680 D 264201 CDS YP_009016.1 46447651 2780727 complement(2396073..2397290) 1 NC_005861.1 hypothetical protein 2397290 2780727 pc2017 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009016.1 2396073 R 264201 CDS YP_009017.1 46447652 2780547 complement(2397920..2398120) 1 NC_005861.1 hypothetical protein 2398120 2780547 pc2018 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009017.1 2397920 R 264201 CDS YP_009018.1 46447653 2780548 2398864..2401743 1 NC_005861.1 hypothetical protein 2401743 2780548 pc2019 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009018.1 2398864 D 264201 CDS YP_009019.1 46447654 2780549 2402185..2402502 1 NC_005861.1 hypothetical protein 2402502 2780549 pc2020 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009019.1 2402185 D 264201 CDS YP_009020.1 46447655 2780915 2402535..2402726 1 NC_005861.1 hypothetical protein 2402726 2780915 pc2021 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009020.1 2402535 D 264201 CDS YP_009021.1 46447656 2780916 complement(2403395..2404831) 1 NC_005861.1 hypothetical protein 2404831 2780916 pc2022 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009021.1 2403395 R 264201 CDS YP_009022.1 46447657 2780917 complement(2404926..2406377) 1 NC_005861.1 hypothetical protein 2406377 2780917 pc2023 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009022.1 2404926 R 264201 CDS YP_009023.1 46447658 2780918 2407806..2408645 1 NC_005861.1 hypothetical protein 2408645 2780918 pc2024 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009023.1 2407806 D 264201 CDS YP_009024.1 46447659 2779877 2408632..2408991 1 NC_005861.1 hypothetical protein 2408991 2779877 pc2025 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009024.1 2408632 D 264201 CDS YP_009025.1 46447660 2779878 2410101..2410292 1 NC_005861.1 hypothetical protein 2410292 2779878 pc2026 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009025.1 2410101 D 264201 CDS YP_009026.1 46447661 2779879 complement(2410591..2411871) 1 NC_005861.1 hypothetical protein 2411871 2779879 pc2027 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009026.1 2410591 R 264201 CDS YP_009027.1 46447662 2780249 2412042..2412704 1 NC_005861.1 hypothetical protein 2412704 2780249 pc2028 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009027.1 2412042 D 264201 CDS YP_009028.1 46447663 2780250 complement(2413078..2413377) 1 NC_005861.1 hypothetical protein 2413377 2780250 pc2029 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009028.1 2413078 R 264201 CDS YP_009029.1 46447664 2780251 complement(2413729..2413986) 1 NC_005861.1 hypothetical protein 2413986 2780251 pc2030 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009029.1 2413729 R 264201 CDS YP_009030.1 46447665 2780252 2414174..2414392 1 NC_005861.1 hypothetical protein 2414392 2780252 pc2031 Candidatus Protochlamydia amoebophila UWE25 hypothetical protein YP_009030.1 2414174 D 264201 CDS