-- dump date 20140619_023814 -- class Genbank::CDS -- table cds_note -- id note YP_003064538.1 COG3617 Prophage antirepressor YP_003064539.1 COG0747 ABC-type dipeptide transport system, periplasmic component YP_003064540.1 COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains YP_003064542.1 COG0553 Superfamily II DNA/RNA helicases, SNF2 family YP_003064543.1 COG0553 Superfamily II DNA/RNA helicases, SNF2 family YP_003064544.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_003064545.1 COG0194 Guanylate kinase YP_003064547.1 COG0582 Integrase YP_003064549.1 COG0208 Ribonucleotide reductase, beta subunit YP_003064550.1 COG0281 Malic enzyme YP_003064551.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component YP_003064552.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component YP_003064553.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_003064554.1 COG3218 ABC-type uncharacterized transport system, auxiliary component YP_003064555.1 COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit YP_003064556.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit YP_003064557.1 COG0222 Ribosomal protein L7/L12 YP_003064558.1 COG0244 Ribosomal protein L10 YP_003064559.1 COG0081 Ribosomal protein L1 YP_003064560.1 COG0080 Ribosomal protein L11 YP_003064561.1 COG0250 Transcription antiterminator YP_003064562.1 COG0690 Preprotein translocase subunit SecE YP_003064563.1 COG0050 GTPases - translation elongation factors YP_003064564.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain YP_003064565.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases YP_003064566.1 COG1932 Phosphoserine aminotransferase YP_003064569.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family YP_003064570.1 COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase YP_003064571.1 COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) YP_003064574.1 COG1562 Phytoene/squalene synthetase YP_003064576.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003064577.1 COG2127 Uncharacterized conserved protein YP_003064579.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) YP_003064580.1 COG4391 Uncharacterized protein conserved in bacteria YP_003064581.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_003064583.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003064584.1 COG4597 ABC-type amino acid transport system, permease component YP_003064585.1 COG0765 ABC-type amino acid transport system, permease component YP_003064586.1 COG1126 ABC-type polar amino acid transport system, ATPase component YP_003064590.1 COG0321 Lipoate-protein ligase B YP_003064591.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase YP_003064593.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) YP_003064594.1 COG0669 Phosphopantetheine adenylyltransferase YP_003064595.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_003064596.1 COG0629 Single-stranded DNA-binding protein YP_003064597.1 COG0178 Excinuclease ATPase subunit YP_003064598.1 COG0174 Glutamine synthetase YP_003064599.1 COG2066 Glutaminase YP_003064600.1 COG0522 Ribosomal protein S4 and related proteins YP_003064603.1 COG0114 Fumarase YP_003064604.1 COG0013 Alanyl-tRNA synthetase YP_003064605.2 COG0468 RecA/RadA recombinase YP_003064606.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003064607.1 COG0254 Ribosomal protein L31 YP_003064608.1 COG0504 CTP synthase (UTP-ammonia lyase) YP_003064610.1 COG0149 Triosephosphate isomerase YP_003064613.1 COG0276 Protoheme ferro-lyase (ferrochelatase) YP_003064614.1 COG3754 Lipopolysaccharide biosynthesis protein YP_003064615.1 COG0602 Organic radical activating enzymes YP_003064618.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases YP_003064619.1 COG0151 Phosphoribosylamine-glycine ligase YP_003064625.1 COG1225 Peroxiredoxin YP_003064627.1 COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I YP_003064628.1 COG0084 Mg-dependent DNase YP_003064629.2 COG0143 Methionyl-tRNA synthetase YP_003064630.1 COG0470 ATPase involved in DNA replication YP_003064631.1 COG0125 Thymidylate kinase YP_003064635.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_003064636.1 COG0628 Predicted permease YP_003064638.1 COG0193 Peptidyl-tRNA hydrolase YP_003064639.1 COG0012 Predicted GTPase, probable translation factor YP_003064640.1 COG0205 6-phosphofructokinase YP_003064641.1 COG2899 Uncharacterized protein conserved in bacteria YP_003064642.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits YP_003064643.1 COG0762 Predicted integral membrane protein YP_003064645.1 COG0221 Inorganic pyrophosphatase YP_003064646.1 COG1217 Predicted membrane GTPase involved in stress response YP_003064647.1 COG0137 Argininosuccinate synthase YP_003064649.1 COG0203 Ribosomal protein L17 YP_003064650.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit YP_003064651.1 COG0100 Ribosomal protein S11 YP_003064652.1 COG0099 Ribosomal protein S13 YP_003064653.1 COG0563 Adenylate kinase and related kinases YP_003064654.1 COG0201 Preprotein translocase subunit SecY YP_003064655.1 COG0200 Ribosomal protein L15 YP_003064656.1 COG1841 Ribosomal protein L30/L7E YP_003064657.1 COG0098 Ribosomal protein S5 YP_003064658.1 COG0256 Ribosomal protein L18 YP_003064659.1 COG0097 Ribosomal protein L6P/L9E YP_003064660.1 COG0096 Ribosomal protein S8 YP_003064661.1 COG0199 Ribosomal protein S14 YP_003064662.1 COG0094 Ribosomal protein L5 YP_003064663.1 COG0198 Ribosomal protein L24 YP_003064664.1 COG0093 Ribosomal protein L14 YP_003064665.1 COG0186 Ribosomal protein S17 YP_003064666.1 COG0255 Ribosomal protein L29 YP_003064667.1 COG0197 Ribosomal protein L16/L10E YP_003064668.1 COG0092 Ribosomal protein S3 YP_003064669.1 COG0091 Ribosomal protein L22 YP_003064670.1 COG0185 Ribosomal protein S19 YP_003064671.1 COG0090 Ribosomal protein L2 YP_003064672.1 COG0089 Ribosomal protein L23 YP_003064673.1 COG0088 Ribosomal protein L4 YP_003064674.1 COG0087 Ribosomal protein L3 YP_003064675.1 COG0051 Ribosomal protein S10 YP_003064676.1 COG0050 GTPases - translation elongation factors YP_003064677.1 COG0480 Translation elongation factors (GTPases) YP_003064678.1 COG0049 Ribosomal protein S7 YP_003064679.1 COG0048 Ribosomal protein S12 YP_003064680.1 COG0511 Biotin carboxyl carrier protein YP_003064681.1 COG0439 Biotin carboxylase YP_003064682.1 COG2360 Leu/Phe-tRNA-protein transferase YP_003064683.1 COG0466 ATP-dependent Lon protease, bacterial type YP_003064684.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_003064685.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_003064686.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003064687.1 COG2267 Lysophospholipase YP_003064688.1 COG0691 tmRNA-binding protein YP_003064689.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase YP_003064690.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI) YP_003064691.1 COG0588 Phosphoglycerate mutase 1 YP_003064692.1 COG0289 Dihydrodipicolinate reductase YP_003064693.1 COG0837 Glucokinase YP_003064694.1 COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems YP_003064695.1 COG0583 Transcriptional regulator YP_003064696.1 COG0492 Thioredoxin reductase YP_003064698.1 COG0018 Arginyl-tRNA synthetase YP_003064699.1 COG0232 dGTP triphosphohydrolase YP_003064700.1 COG0316 Uncharacterized conserved protein YP_003064701.1 COG0708 Exonuclease III YP_003064702.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_003064703.1 COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases YP_003064705.1 COG0102 Ribosomal protein L13 YP_003064706.1 COG0103 Ribosomal protein S9 YP_003064707.1 COG0002 Acetylglutamate semialdehyde dehydrogenase YP_003064708.1 COG0101 Pseudouridylate synthase YP_003064709.2 COG0223 Methionyl-tRNA formyltransferase YP_003064710.1 COG0242 N-formylmethionyl-tRNA deformylase YP_003064712.1 COG1960 Acyl-CoA dehydrogenases YP_003064713.1 COG0540 Aspartate carbamoyltransferase, catalytic chain YP_003064714.1 COG0044 Dihydroorotase and related cyclic amidohydrolases YP_003064715.1 COG0344 Predicted membrane protein YP_003064716.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_003064717.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake YP_003064719.1 COG0550 Topoisomerase IA YP_003064720.1 COG0136 Aspartate-semialdehyde dehydrogenase YP_003064721.1 COG2951 Membrane-bound lytic murein transglycosylase B YP_003064722.1 COG1040 Predicted amidophosphoribosyltransferases YP_003064724.1 COG0678 Peroxiredoxin YP_003064725.1 COG0784 FOG: CheY-like receiver YP_003064726.1 COG0293 23S rRNA methylase YP_003064729.1 COG0073 EMAP domain YP_003064730.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit YP_003064731.1 COG0292 Ribosomal protein L20 YP_003064732.1 COG0291 Ribosomal protein L35 YP_003064733.1 COG0290 Translation initiation factor 3 (IF-3) YP_003064734.1 COG0481 Membrane GTPase LepA YP_003064735.1 COG0500 SAM-dependent methyltransferases YP_003064736.1 COG3202 ATP/ADP translocase YP_003064738.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003064739.1 COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) YP_003064740.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) YP_003064741.1 COG1087 UDP-glucose 4-epimerase YP_003064742.1 COG0360 Ribosomal protein S6 YP_003064743.1 COG0238 Ribosomal protein S18 YP_003064744.1 COG0359 Ribosomal protein L9 YP_003064745.1 COG0305 Replicative DNA helicase YP_003064746.1 COG0787 Alanine racemase YP_003064747.1 COG1066 Predicted ATP-dependent serine protease YP_003064748.1 COG1286 Uncharacterized membrane protein, required for colicin V production YP_003064749.1 COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase YP_003064750.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003064751.1 COG1495 Disulfide bond formation protein DsbB YP_003064753.1 COG4175 ABC-type proline/glycine betaine transport system, ATPase component YP_003064754.1 COG4176 ABC-type proline/glycine betaine transport system, permease component YP_003064755.1 COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components YP_003064756.1 COG0053 Predicted Co/Zn/Cd cation transporters YP_003064757.1 COG0780 Enzyme related to GTP cyclohydrolase I YP_003064758.1 COG0781 Transcription termination factor YP_003064759.1 COG0054 Riboflavin synthase beta-chain YP_003064760.1 COG0307 Riboflavin synthase alpha chain YP_003064761.1 COG0117 Pyrimidine deaminase YP_003064762.1 COG0112 Glycine/serine hydroxymethyltransferase YP_003064763.1 COG2989 Uncharacterized protein conserved in bacteria YP_003064764.1 COG1846 Transcriptional regulators YP_003064765.2 COG0113 Delta-aminolevulinic acid dehydratase YP_003064766.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit YP_003064768.1 COG0372 Citrate synthase YP_003064770.1 COG0658 Predicted membrane metal-binding protein YP_003064771.2 COG0590 Cytosine/adenosine deaminases YP_003064772.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003064773.1 COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) YP_003064774.1 COG0333 Ribosomal protein L32 YP_003064775.2 COG3004 Na+/H+ antiporter YP_003064776.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_003064777.1 COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 YP_003064778.1 COG1210 UDP-glucose pyrophosphorylase YP_003064779.2 COG1495 Disulfide bond formation protein DsbB YP_003064780.1 COG1295 Predicted membrane protein YP_003064781.1 COG2086 Electron transfer flavoprotein, beta subunit YP_003064782.1 COG2025 Electron transfer flavoprotein, alpha subunit YP_003064783.1 COG0165 Argininosuccinate lyase YP_003064784.1 COG0019 Diaminopimelate decarboxylase YP_003064785.1 COG1338 Flagellar biosynthesis pathway, component FliP YP_003064787.1 COG2063 Flagellar basal body L-ring protein YP_003064788.1 COG3334 Uncharacterized conserved protein YP_003064789.1 COG1706 Flagellar basal-body P-ring protein YP_003064790.1 COG1261 Flagellar basal body P-ring biosynthesis protein YP_003064791.1 COG4786 Flagellar basal body rod protein YP_003064792.1 COG1677 Flagellar hook-basal body protein YP_003064793.1 COG1558 Flagellar basal body rod protein YP_003064794.1 COG1815 Flagellar basal body protein YP_003064795.1 COG0513 Superfamily II DNA and RNA helicases YP_003064796.1 COG0177 Predicted EndoIII-related endonuclease YP_003064797.1 COG2931 RTX toxins and related Ca2+-binding proteins YP_003064798.2 COG4618 ABC-type protease/lipase transport system, ATPase and permease components YP_003064799.1 COG0845 Membrane-fusion protein YP_003064800.1 COG1301 Na+/H+-dicarboxylate symporters YP_003064803.1 COG0105 Nucleoside diphosphate kinase YP_003064804.1 COG2927 DNA polymerase III, chi subunit YP_003064805.1 COG0260 Leucyl aminopeptidase YP_003064806.2 COG0795 Predicted permeases YP_003064807.2 COG0795 Predicted permeases YP_003064808.1 COG1452 Organic solvent tolerance protein OstA YP_003064809.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003064810.1 COG1995 Pyridoxal phosphate biosynthesis protein YP_003064811.1 COG0030 Dimethyladenosine transferase (rRNA methylation) YP_003064812.1 COG0323 DNA mismatch repair enzyme (predicted ATPase) YP_003064813.1 COG1734 DnaK suppressor protein YP_003064814.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase YP_003064815.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase YP_003064817.1 COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family YP_003064818.1 COG0742 N6-adenine-specific methylase YP_003064819.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases YP_003064821.1 COG5508 Uncharacterized conserved small protein YP_003064822.1 COG0462 Phosphoribosylpyrophosphate synthetase YP_003064823.1 COG1565 Uncharacterized conserved protein YP_003064824.1 COG0682 Prolipoprotein diacylglyceryltransferase YP_003064826.1 COG0642 Signal transduction histidine kinase YP_003064827.1 COG0518 GMP synthase - Glutamine amidotransferase domain YP_003064828.2 COG0861 Membrane protein TerC, possibly involved in tellurium resistance YP_003064829.1 COG1146 Ferredoxin YP_003064830.1 COG1329 Transcriptional regulators, similar to M. xanthus CarD YP_003064831.1 COG1825 Ribosomal protein L25 (general stress protein Ctc) YP_003064832.1 COG0173 Aspartyl-tRNA synthetase YP_003064833.1 COG0505 Carbamoylphosphate synthase small subunit YP_003064834.1 COG0457 FOG: TPR repeat YP_003064835.2 COG1160 Predicted GTPases YP_003064836.1 COG0192 S-adenosylmethionine synthetase YP_003064837.1 COG1396 Predicted transcriptional regulators YP_003064838.1 COG0815 Apolipoprotein N-acyltransferase YP_003064839.1 COG1253 Hemolysins and related proteins containing CBS domains YP_003064840.1 COG0319 Predicted metal-dependent hydrolase YP_003064841.2 COG0621 2-methylthioadenine synthetase YP_003064842.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone YP_003064843.1 COG0694 Thioredoxin-like proteins and domains YP_003064845.1 COG4992 Ornithine/acetylornithine aminotransferase YP_003064846.2 COG0078 Ornithine carbamoyltransferase YP_003064847.1 COG0167 Dihydroorotate dehydrogenase YP_003064848.1 COG1686 D-alanyl-D-alanine carboxypeptidase YP_003064849.1 COG0457 FOG: TPR repeat YP_003064850.1 COG0828 Ribosomal protein S21 YP_003064851.1 COG0854 Pyridoxal phosphate biosynthesis protein YP_003064852.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) YP_003064853.1 COG0782 Transcription elongation factor YP_003064854.2 COG0438 Glycosyltransferase YP_003064855.1 COG0469 Pyruvate kinase YP_003064856.1 COG5480 Predicted integral membrane protein YP_003064857.1 COG1158 Transcription termination factor YP_003064858.1 COG0060 Isoleucyl-tRNA synthetase YP_003064863.1 COG0642 Signal transduction histidine kinase YP_003064864.1 COG1048 Aconitase A YP_003064865.1 COG0670 Integral membrane protein, interacts with FtsH YP_003064866.1 COG0284 Orotidine-5'-phosphate decarboxylase YP_003064867.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) YP_003064868.1 COG1488 Nicotinic acid phosphoribosyltransferase YP_003064869.1 COG0539 Ribosomal protein S1 YP_003064870.1 COG0283 Cytidylate kinase YP_003064871.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase YP_003064873.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_003064874.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_003064875.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_003064876.1 COG0556 Helicase subunit of the DNA excision repair complex YP_003064877.1 COG0612 Predicted Zn-dependent peptidases YP_003064878.1 COG0498 Threonine synthase YP_003064879.1 COG0863 DNA modification methylase YP_003064880.1 COG1722 Exonuclease VII small subunit YP_003064881.1 COG2202 FOG: PAS/PAC domain YP_003064882.1 COG3024 Uncharacterized protein conserved in bacteria YP_003064883.1 COG0361 Translation initiation factor 1 (IF-1) YP_003064884.1 COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 YP_003064885.1 COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 YP_003064886.1 COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 YP_003064887.1 COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 YP_003064888.1 COG0267 Ribosomal protein L33 YP_003064889.1 COG0784 FOG: CheY-like receiver YP_003064890.1 COG1651 Protein-disulfide isomerase YP_003064892.1 COG1194 A/G-specific DNA glycosylase YP_003064893.1 COG0717 Deoxycytidine deaminase YP_003064894.1 COG0230 Ribosomal protein L34 YP_003064895.1 COG0594 RNase P protein component YP_003064896.1 COG0706 Preprotein translocase subunit YidC YP_003064897.1 COG0218 Predicted GTPase YP_003064898.1 COG0502 Biotin synthase and related enzymes YP_003064899.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_003064900.1 COG0132 Dethiobiotin synthetase YP_003064901.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_003064902.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_003064903.1 COG0582 Integrase YP_003065242.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit YP_003065241.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit YP_003065240.1 COG1072 Panthothenate kinase YP_003065239.1 COG1866 Phosphoenolpyruvate carboxykinase (ATP) YP_003065238.2 COG0642 Signal transduction histidine kinase YP_003065237.1 COG0802 Predicted ATPase or kinase YP_003065236.1 COG3893 Inactivated superfamily I helicase YP_003065235.1 COG0526 Thiol-disulfide isomerase and thioredoxins YP_003065234.1 COG0285 Folylpolyglutamate synthase YP_003065233.1 COG0777 Acetyl-CoA carboxylase beta subunit YP_003065232.2 COG0237 Dephospho-CoA kinase YP_003065231.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_003065230.1 COG1952 Preprotein translocase subunit SecB YP_003065228.1 COG4395 Uncharacterized protein conserved in bacteria YP_003065227.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit YP_003065226.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation YP_003065225.1 COG0407 Uroporphyrinogen-III decarboxylase YP_003065224.1 COG1981 Predicted membrane protein YP_003065223.1 COG1158 Transcription termination factor YP_003065222.1 COG0486 Predicted GTPase YP_003065221.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division YP_003065220.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_003065219.1 COG1192 ATPases involved in chromosome partitioning YP_003065218.1 COG1475 Predicted transcriptional regulators YP_003065217.1 COG1466 DNA polymerase III, delta subunit YP_003065215.1 COG0495 Leucyl-tRNA synthetase YP_003065214.1 COG0325 Predicted enzyme with a TIM-barrel fold YP_003065213.1 COG3820 Uncharacterized protein conserved in bacteria YP_003065212.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_003065210.1 COG0708 Exonuclease III YP_003065209.1 COG0328 Ribonuclease HI YP_003065208.1 COG2334 Putative homoserine kinase type II (protein kinase fold) YP_003065207.1 COG0180 Tryptophanyl-tRNA synthetase YP_003065206.1 COG0728 Uncharacterized membrane protein, putative virulence factor YP_003065205.2 COG2309 Leucyl aminopeptidase (aminopeptidase T) YP_003065204.1 COG1570 Exonuclease VII, large subunit YP_003065202.1 COG0779 Uncharacterized protein conserved in bacteria YP_003065201.1 COG0195 Transcription elongation factor YP_003065200.1 COG0532 Translation initiation factor 2 (IF-2; GTPase) YP_003065199.1 COG0858 Ribosome-binding factor A YP_003065198.1 COG0184 Ribosomal protein S15P/S13E YP_003065197.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) YP_003065195.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases YP_003065194.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase YP_003065193.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases YP_003065192.1 COG0052 Ribosomal protein S2 YP_003065191.1 COG0264 Translation elongation factor Ts YP_003065190.1 COG0528 Uridylate kinase YP_003065189.1 COG0233 Ribosome recycling factor YP_003065188.1 COG0020 Undecaprenyl pyrophosphate synthase YP_003065187.1 COG0575 CDP-diglyceride synthetase YP_003065186.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1 YP_003065185.1 COG4775 Outer membrane protein/protective antigen OMA87 YP_003065184.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003065183.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases YP_003065182.2 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_003065181.1 COG3494 Uncharacterized protein conserved in bacteria YP_003065180.1 COG0763 Lipid A disaccharide synthetase YP_003065179.1 COG1195 Recombinational DNA repair ATPase (RecF pathway) YP_003065178.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase YP_003065177.1 COG3807 Uncharacterized protein conserved in bacteria YP_003065176.1 COG0718 Uncharacterized protein conserved in bacteria YP_003065175.1 COG0353 Recombinational DNA repair protein (RecF pathway) YP_003065174.1 COG0277 FAD/FMN-containing dehydrogenases YP_003065173.1 COG0009 Putative translation factor (SUA5) YP_003065171.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_003065170.1 COG0752 Glycyl-tRNA synthetase, alpha subunit YP_003065169.2 COG4123 Predicted O-methyltransferase YP_003065168.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003065167.1 COG0061 Predicted sugar kinase YP_003065166.1 COG1186 Protein chain release factor B YP_003065165.1 COG5009 Membrane carboxypeptidase/penicillin-binding protein YP_003065164.1 COG1530 Ribonucleases G and E YP_003065163.1 COG0249 Mismatch repair ATPase (MutS family) YP_003065162.1 COG0597 Lipoprotein signal peptidase YP_003065161.1 COG0776 Bacterial nucleoid DNA-binding protein YP_003065160.1 COG0616 Periplasmic serine proteases (ClpP class) YP_003065158.1 COG1934 Uncharacterized protein conserved in bacteria YP_003065157.1 COG1137 ABC-type (unclassified) transport system, ATPase component YP_003065156.1 COG1573 Uracil-DNA glycosylase YP_003065155.1 COG1748 Saccharopine dehydrogenase and related proteins YP_003065154.1 COG0019 Diaminopimelate decarboxylase YP_003065153.1 COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease YP_003065152.1 COG2835 Uncharacterized conserved protein YP_003065151.2 COG4964 Flp pilus assembly protein, secretin CpaC YP_003065149.1 COG3847 Flp pilus assembly protein, pilin Flp YP_003065147.1 COG3847 Flp pilus assembly protein, pilin Flp YP_003065146.1 COG3847 Flp pilus assembly protein, pilin Flp YP_003065145.1 COG3847 Flp pilus assembly protein, pilin Flp YP_003065142.1 COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases YP_003065141.1 COG3745 Flp pilus assembly protein CpaB YP_003065140.1 COG4964 Flp pilus assembly protein, secretin CpaC YP_003065138.1 COG4963 Flp pilus assembly protein, ATPase CpaE YP_003065137.1 COG4962 Flp pilus assembly protein, ATPase CpaF YP_003065135.1 COG4965 Flp pilus assembly protein TadB YP_003065134.1 COG2064 Flp pilus assembly protein TadC YP_003065133.1 COG1528 Ferritin-like protein YP_003065132.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_003065131.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component YP_003065130.1 COG4531 ABC-type Zn2+ transport system, periplasmic component/surface adhesin YP_003065129.1 COG0362 6-phosphogluconate dehydrogenase YP_003065128.1 COG0335 Ribosomal protein L19 YP_003065127.1 COG0336 tRNA-(guanine-N1)-methyltransferase YP_003065126.1 COG0806 RimM protein, required for 16S rRNA processing YP_003065125.1 COG0228 Ribosomal protein S16 YP_003065124.1 COG0541 Signal recognition particle GTPase YP_003065123.1 COG0253 Diaminopimelate epimerase YP_003065122.1 COG0552 Signal recognition particle GTPase YP_003065121.1 COG2917 Intracellular septation protein A YP_003065120.1 COG0226 ABC-type phosphate transport system, periplasmic component YP_003065119.2 COG0573 ABC-type phosphate transport system, permease component YP_003065118.1 COG0581 ABC-type phosphate transport system, permease component YP_003065117.1 COG1117 ABC-type phosphate transport system, ATPase component YP_003065116.1 COG0704 Phosphate uptake regulator YP_003065115.2 COG0576 Molecular chaperone GrpE (heat shock protein) YP_003065114.1 COG0642 Signal transduction histidine kinase YP_003065113.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain YP_003065111.1 COG1686 D-alanyl-D-alanine carboxypeptidase YP_003065110.1 COG1970 Large-conductance mechanosensitive channel YP_003065109.1 COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) YP_003065108.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein YP_003065107.1 COG2771 DNA-binding HTH domain-containing proteins YP_003065106.1 COG2771 DNA-binding HTH domain-containing proteins YP_003065103.1 COG1377 Flagellar biosynthesis pathway, component FlhB YP_003065102.1 COG1536 Flagellar motor switch protein YP_003065101.1 COG1886 Flagellar motor switch/type III secretory pathway protein YP_003065099.2 COG1291 Flagellar motor component YP_003065098.1 COG4786 Flagellar basal body rod protein YP_003065097.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase YP_003065096.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003065094.2 COG0496 Predicted acid phosphatase YP_003065093.1 COG0172 Seryl-tRNA synthetase YP_003065090.1 COG2867 Oligoketide cyclase/lipid transport protein YP_003065089.1 COG0320 Lipoate synthase YP_003065088.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_003065087.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_003065086.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_003065085.2 COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit YP_003065084.1 COG2919 Septum formation initiator YP_003065083.1 COG0148 Enolase YP_003065082.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase YP_003065079.1 COG0144 tRNA and rRNA cytosine-C5-methylases YP_003065077.1 COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) YP_003065076.1 COG0288 Carbonic anhydrase YP_003065075.1 COG2902 NAD-specific glutamate dehydrogenase YP_003065074.1 COG2925 Exonuclease I YP_003065073.1 COG0217 Uncharacterized conserved protein YP_003065072.1 COG1692 Uncharacterized protein conserved in bacteria YP_003065071.1 COG0212 5-formyltetrahydrofolate cyclo-ligase YP_003065068.1 COG0021 Transketolase YP_003065067.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase YP_003065066.1 COG0126 3-phosphoglycerate kinase YP_003065065.1 COG3588 Fructose-1,6-bisphosphate aldolase YP_003065062.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase YP_003065061.1 COG0536 Predicted GTPase YP_003065060.1 COG0211 Ribosomal protein L27 YP_003065059.1 COG0261 Ribosomal protein L21 YP_003065054.1 COG1196 Chromosome segregation ATPases YP_003065053.1 COG1196 Chromosome segregation ATPases YP_003065051.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain YP_003065050.2 COG0443 Molecular chaperone YP_003065049.1 COG0349 Ribonuclease D YP_003065048.1 COG3487 Uncharacterized iron-regulated protein YP_003065047.1 COG0144 tRNA and rRNA cytosine-C5-methylases YP_003065046.1 COG1402 Uncharacterized protein, putative amidase YP_003065043.1 COG0689 RNase PH YP_003065042.1 COG0127 Xanthosine triphosphate pyrophosphatase YP_003065041.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases YP_003065040.1 COG0593 ATPase involved in DNA replication initiation YP_003065039.1 COG0268 Ribosomal protein S20 YP_003065038.1 COG0266 Formamidopyrimidine-DNA glycosylase YP_003065037.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis YP_003065036.1 COG0661 Predicted unusual protein kinase YP_003065035.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase YP_003065034.1 COG0071 Molecular chaperone (small heat shock protein) YP_003065033.1 COG1959 Predicted transcriptional regulator YP_003065032.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase YP_003065031.1 COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) YP_003065030.1 COG0056 F0F1-type ATP synthase, alpha subunit YP_003065029.1 COG0224 F0F1-type ATP synthase, gamma subunit YP_003065028.1 COG0055 F0F1-type ATP synthase, beta subunit YP_003065027.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) YP_003065026.1 COG0104 Adenylosuccinate synthase YP_003065024.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) YP_003065023.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003065022.2 COG1409 Predicted phosphohydrolases YP_003065021.1 COG0564 Pseudouridylate synthases, 23S RNA-specific YP_003065020.1 COG3755 Uncharacterized protein conserved in bacteria YP_003065019.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins YP_003065018.1 COG0006 Xaa-Pro aminopeptidase YP_003065017.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes YP_003065016.1 COG0566 rRNA methylases YP_003065015.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase YP_003065014.1 COG0513 Superfamily II DNA and RNA helicases YP_003065013.1 COG0558 Phosphatidylglycerophosphate synthase YP_003065012.2 COG0322 Nuclease subunit of the excinuclease complex YP_003065010.2 COG4986 ABC-type anion transport system, duplicated permease component YP_003065009.1 COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component YP_003065008.1 COG0451 Nucleoside-diphosphate-sugar epimerases YP_003065007.1 COG0625 Glutathione S-transferase YP_003065006.1 COG1968 Uncharacterized bacitracin resistance protein YP_003065005.1 COG0457 FOG: TPR repeat YP_003065004.1 COG0354 Predicted aminomethyltransferase related to GcvT YP_003065002.1 COG3034 Uncharacterized protein conserved in bacteria YP_003065001.1 COG0825 Acetyl-CoA carboxylase alpha subunit YP_003065000.2 COG4974 Site-specific recombinase XerD YP_003064999.1 COG0271 Stress-induced morphogen (activity unknown) YP_003064998.1 COG2214 DnaJ-class molecular chaperone YP_003064997.1 COG0227 Ribosomal protein L28 YP_003064996.1 COG0491 Zn-dependent hydrolases, including glyoxylases YP_003064995.1 COG0500 SAM-dependent methyltransferases YP_003064993.2 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_003064992.1 COG1434 Uncharacterized conserved protein YP_003064991.1 COG1183 Phosphatidylserine synthase YP_003064990.1 COG0688 Phosphatidylserine decarboxylase YP_003064989.1 COG5265 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components YP_003064988.1 COG2962 Predicted permeases YP_003064986.1 COG0215 Cysteinyl-tRNA synthetase YP_003064985.1 COG4961 Flp pilus assembly protein TadG YP_003064983.1 COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN YP_003064982.1 COG0150 Phosphoribosylaminoimidazole (AIR) synthetase YP_003064980.1 COG0593 ATPase involved in DNA replication initiation YP_003064977.1 COG4143 ABC-type thiamine transport system, periplasmic component YP_003064976.1 COG1840 ABC-type Fe3+ transport system, periplasmic component YP_003064975.1 COG0799 Uncharacterized homolog of plant Iojap protein YP_003064974.1 COG4143 ABC-type thiamine transport system, periplasmic component YP_003064973.2 COG1178 ABC-type Fe3+ transport system, permease component YP_003064972.1 COG3840 ABC-type thiamine transport system, ATPase component YP_003064971.1 COG2861 Uncharacterized protein conserved in bacteria YP_003064970.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes YP_003064968.1 COG3617 Prophage antirepressor YP_003064967.1 COG0817 Holliday junction resolvasome, endonuclease subunit YP_003064966.1 COG0632 Holliday junction resolvasome, DNA-binding subunit YP_003064965.1 COG2255 Holliday junction resolvasome, helicase subunit YP_003064964.1 COG0811 Biopolymer transport proteins YP_003064961.1 COG0823 Periplasmic component of the Tol biopolymer transport system YP_003064960.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_003064959.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_003064958.1 COG0465 ATP-dependent Zn proteases YP_003064957.1 COG1109 Phosphomannomutase YP_003064956.1 COG3761 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_003064955.1 COG4765 Uncharacterized protein conserved in bacteria YP_003064953.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_003064952.1 COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components YP_003064951.1 COG1121 ABC-type Mn/Zn transport systems, ATPase component YP_003064950.1 COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin YP_003064949.1 COG0331 (acyl-carrier-protein) S-malonyltransferase YP_003064948.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) YP_003064947.1 COG0236 Acyl carrier protein YP_003064946.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase YP_003064945.1 COG1559 Predicted periplasmic solute-binding protein YP_003064944.1 COG1344 Flagellin and related hook-associated proteins YP_003064942.1 COG1360 Flagellar motor protein YP_003064939.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003064938.1 COG1749 Flagellar hook protein FlgE YP_003064937.1 COG1256 Flagellar hook-associated protein YP_003064936.1 COG1344 Flagellin and related hook-associated proteins YP_003064933.1 COG1843 Flagellar hook capping protein YP_003064932.1 COG1987 Flagellar biosynthesis pathway, component FliQ YP_003064930.2 COG0270 Site-specific DNA methylase YP_003064929.1 COG0270 Site-specific DNA methylase YP_003064925.1 COG1298 Flagellar biosynthesis pathway, component FlhA YP_003064924.1 COG1684 Flagellar biosynthesis pathway, component FliR YP_003064920.1 COG0459 Chaperonin GroEL (HSP60 family) YP_003064919.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase YP_003064918.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase YP_003064917.1 COG0364 Glucose-6-phosphate 1-dehydrogenase YP_003064916.1 COG0174 Glutamine synthetase YP_003064915.1 COG0209 Ribonucleotide reductase, alpha subunit YP_003064913.1 COG2913 Small protein A (tmRNA-binding) YP_003064912.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_003064911.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme YP_003064910.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III YP_003064909.1 COG0776 Bacterial nucleoid DNA-binding protein YP_003064908.1 COG0605 Superoxide dismutase YP_003064907.1 COG3965 Predicted Co/Zn/Cd cation transporters YP_003064906.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase YP_003065244.1 COG0489 ATPases involved in chromosome partitioning YP_003065245.1 COG3158 K+ transporter YP_003065247.1 COG0358 DNA primase (bacterial type) YP_003065248.2 COG0794 Predicted sugar phosphate isomerase involved in capsule formation YP_003065249.1 COG0286 Type I restriction-modification system methyltransferase subunit YP_003065250.1 COG0732 Restriction endonuclease S subunits YP_003065254.1 COG1183 Phosphatidylserine synthase YP_003065255.1 COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases YP_003065256.1 COG0738 Fucose permease YP_003065258.1 COG0208 Ribonucleotide reductase, beta subunit YP_003065259.1 COG0196 FAD synthase YP_003065260.1 COG0647 Predicted sugar phosphatases of the HAD superfamily YP_003065261.1 COG0234 Co-chaperonin GroES (HSP10) YP_003065262.1 COG0459 Chaperonin GroEL (HSP60 family) YP_003065265.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A) YP_003065266.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases YP_003065267.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit YP_003065268.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 YP_003065269.1 COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit YP_003065271.1 COG1894 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit YP_003065272.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) YP_003065273.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) YP_003065274.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) YP_003065275.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) YP_003065277.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) YP_003065278.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit YP_003065279.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) YP_003065280.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) YP_003065281.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase YP_003065282.1 COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily YP_003065283.1 COG0442 Prolyl-tRNA synthetase YP_003065284.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component YP_003065285.1 COG2227 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase YP_003065286.1 COG0527 Aspartokinases YP_003065287.1 COG0216 Protein chain release factor A YP_003065288.1 COG2890 Methylase of polypeptide chain release factors YP_003065290.1 COG0542 ATPases with chaperone activity, ATP-binding subunit YP_003065292.1 COG0739 Membrane proteins related to metalloendopeptidases YP_003065295.1 COG0582 Integrase YP_003065296.1 COG0759 Uncharacterized conserved protein YP_003065297.2 COG0302 GTP cyclohydrolase I YP_003065302.1 COG0516 IMP dehydrogenase/GMP reductase YP_003065304.1 COG5002 Signal transduction histidine kinase YP_003065305.1 COG0784 FOG: CheY-like receiver YP_003065306.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain YP_003065309.1 COG4177 ABC-type branched-chain amino acid transport system, permease component YP_003065310.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) YP_003065311.1 COG2365 Protein tyrosine/serine phosphatase YP_003065312.1 COG0024 Methionine aminopeptidase YP_003065313.1 COG0460 Homoserine dehydrogenase YP_003065314.1 COG0608 Single-stranded DNA-specific exonuclease YP_003065315.1 COG0538 Isocitrate dehydrogenases YP_003065316.1 COG0642 Signal transduction histidine kinase YP_003065317.1 COG0565 rRNA methylase YP_003065318.1 COG0796 Glutamate racemase YP_003065323.2 COG0194 Guanylate kinase YP_003065324.1 COG0788 Formyltetrahydrofolate hydrolase YP_003065326.1 COG1278 Cold shock proteins YP_003065328.1 COG1164 Oligoendopeptidase F YP_003065329.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_003065330.1 COG1132 ABC-type multidrug transport system, ATPase and permease components YP_003065331.1 COG0463 Glycosyltransferases involved in cell wall biogenesis YP_003065332.1 COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes YP_003065333.1 COG1088 dTDP-D-glucose 4,6-dehydratase YP_003065334.1 COG1091 dTDP-4-dehydrorhamnose reductase YP_003065335.1 COG1209 dTDP-glucose pyrophosphorylase YP_003065336.1 COG3754 Lipopolysaccharide biosynthesis protein YP_003065337.1 COG4651 Kef-type K+ transport system, predicted NAD-binding component YP_003065338.1 COG0342 Preprotein translocase subunit SecD YP_003065340.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase YP_003065341.1 COG0124 Histidyl-tRNA synthetase YP_003065343.1 COG1538 Outer membrane protein YP_003065345.1 COG3827 Uncharacterized protein conserved in bacteria YP_003065346.1 COG0525 Valyl-tRNA synthetase YP_003065347.1 COG4961 Flp pilus assembly protein TadG YP_003065348.1 COG0797 Lipoproteins YP_003065349.1 COG1432 Uncharacterized conserved protein YP_003065350.1 COG1758 DNA-directed RNA polymerase, subunit K/omega YP_003065351.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) YP_003065352.1 COG0681 Signal peptidase I YP_003065353.1 COG0571 dsRNA-specific ribonuclease YP_003065354.1 COG1159 GTPase YP_003065355.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) YP_003065356.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains YP_003065357.1 COG2928 Uncharacterized conserved protein YP_003065358.1 COG1200 RecG-like helicase YP_003065359.1 COG2938 Uncharacterized conserved protein YP_003065360.1 COG1197 Transcription-repair coupling factor (superfamily II helicase) YP_003065361.1 COG1381 Recombinational DNA repair protein (RecF pathway) YP_003065362.1 COG0162 Tyrosyl-tRNA synthetase YP_003065363.2 COG1434 Uncharacterized conserved protein YP_003065365.1 COG0210 Superfamily I DNA and RNA helicases YP_003065366.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins YP_003065367.1 COG2982 Uncharacterized protein involved in outer membrane biogenesis YP_003065368.1 COG3814 Uncharacterized protein conserved in bacteria YP_003065369.1 COG0207 Thymidylate synthase YP_003065370.1 COG0262 Dihydrofolate reductase YP_003065371.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_003065372.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs YP_003065373.1 COG0560 Phosphoserine phosphatase YP_003065374.1 COG3108 Uncharacterized protein conserved in bacteria YP_003065377.1 COG0208 Ribonucleotide reductase, beta subunit YP_003065380.1 COG0477 Permeases of the major facilitator superfamily YP_003065381.1 COG0278 Glutaredoxin-related protein YP_003065382.1 COG0271 Stress-induced morphogen (activity unknown) YP_003065383.1 COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain YP_003065384.1 COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain YP_003065385.1 COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component YP_003065386.1 COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase YP_003065387.1 COG0015 Adenylosuccinate lyase YP_003065388.1 COG0036 Pentose-5-phosphate-3-epimerase YP_003065389.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) YP_003065390.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit YP_003065391.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases YP_003065392.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) YP_003065395.1 COG1280 Putative threonine efflux protein YP_003065402.1 COG3153 Predicted acetyltransferase YP_003065404.1 COG0556 Helicase subunit of the DNA excision repair complex YP_003065405.1 COG1607 Acyl-CoA hydrolase YP_003065406.1 COG0730 Predicted permeases YP_003065409.1 COG3839 ABC-type sugar transport systems, ATPase components YP_003065411.1 COG2166 SufE protein probably involved in Fe-S center assembly YP_003065412.1 COG0388 Predicted amidohydrolase YP_003065413.1 COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase YP_003065417.1 COG0441 Threonyl-tRNA synthetase YP_003065419.1 COG0208 Ribonucleotide reductase, beta subunit YP_003065424.1 COG0461 Orotate phosphoribosyltransferase YP_003065425.1 COG0418 Dihydroorotase YP_003065426.1 COG3600 Uncharacterized phage-associated protein YP_003065429.1 COG3407 Mevalonate pyrophosphate decarboxylase YP_003065430.1 COG1577 Mevalonate kinase YP_003065431.1 COG1577 Mevalonate kinase YP_003065432.1 COG3425 3-hydroxy-3-methylglutaryl CoA synthase YP_003065433.1 COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases YP_003065434.2 COG1257 Hydroxymethylglutaryl-CoA reductase YP_003065435.1 COG1988 Predicted membrane-bound metal-dependent hydrolases YP_003065437.1 COG0644 Dehydrogenases (flavoproteins) YP_003065438.1 COG0756 dUTPase YP_003065439.1 COG0606 Predicted ATPase with chaperone activity YP_003065440.1 COG0606 Predicted ATPase with chaperone activity YP_003065441.1 COG0606 Predicted ATPase with chaperone activity YP_003065444.1 COG0603 Predicted PP-loop superfamily ATPase YP_003065445.1 COG0720 6-pyruvoyl-tetrahydropterin synthase YP_003065446.1 COG0457 FOG: TPR repeat YP_003065448.2 COG1587 Uroporphyrinogen-III synthase YP_003065450.1 COG0181 Porphobilinogen deaminase YP_003065451.1 COG0533 Metal-dependent proteases with possible chaperone activity YP_003065452.1 COG0240 Glycerol-3-phosphate dehydrogenase YP_003065453.1 COG2947 Uncharacterized conserved protein YP_003065454.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_003065455.1 COG2142 Succinate dehydrogenase, hydrophobic anchor subunit YP_003065456.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit YP_003065457.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit YP_003065460.1 COG1485 Predicted ATPase YP_003065461.1 COG0039 Malate/lactate dehydrogenases YP_003065462.1 COG0045 Succinyl-CoA synthetase, beta subunit YP_003065463.1 COG0074 Succinyl-CoA synthetase, alpha subunit YP_003065464.1 COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes YP_003065465.1 COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes YP_003065466.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_003065467.1 COG0120 Ribose 5-phosphate isomerase YP_003065468.1 COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes YP_003065469.1 COG3772 Phage-related lysozyme (muraminidase) YP_003065470.1 COG3772 Phage-related lysozyme (muraminidase) YP_003065471.1 COG3772 Phage-related lysozyme (muraminidase) YP_003065472.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component YP_003065473.1 COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component YP_003065474.1 COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component YP_003065475.1 COG0520 Selenocysteine lyase YP_003065476.1 COG2151 Predicted metal-sulfur cluster biosynthetic enzyme YP_003065477.1 COG0316 Uncharacterized conserved protein YP_003065478.1 COG1509 Lysine 2,3-aminomutase YP_003065479.1 COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) YP_003065480.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) YP_003065483.1 COG1472 Beta-glucosidase-related glycosidases YP_003065484.1 COG1472 Beta-glucosidase-related glycosidases YP_003065486.1 COG0408 Coproporphyrinogen III oxidase YP_003065487.1 COG0692 Uracil DNA glycosylase YP_003065488.1 COG0013 Alanyl-tRNA synthetase YP_003065489.1 COG0164 Ribonuclease HII YP_003065492.1 COG2199 FOG: GGDEF domain YP_003065493.1 COG3750 Uncharacterized protein conserved in bacteria YP_003065496.1 COG0620 Methionine synthase II (cobalamin-independent) YP_003065498.1 COG0711 F0F1-type ATP synthase, subunit b YP_003065499.1 COG0711 F0F1-type ATP synthase, subunit b YP_003065500.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K YP_003065501.1 COG0356 F0F1-type ATP synthase, subunit a YP_003065503.1 COG0225 Peptide methionine sulfoxide reductase YP_003065504.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes YP_003065506.1 COG2945 Predicted hydrolase of the alpha/beta superfamily YP_003065507.1 COG0751 Glycyl-tRNA synthetase, beta subunit YP_003065508.1 COG0812 UDP-N-acetylmuramate dehydrogenase YP_003065509.1 COG0773 UDP-N-acetylmuramate-alanine ligase YP_003065510.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase YP_003065511.1 COG0772 Bacterial cell division membrane protein YP_003065512.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase YP_003065513.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_003065514.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase YP_003065515.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase YP_003065516.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2 YP_003065517.1 COG5462 Predicted secreted (periplasmic) protein YP_003065518.2 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis YP_003065519.1 COG2001 Uncharacterized protein conserved in bacteria YP_003065520.1 COG0033 Phosphoglucomutase YP_003065523.1 COG0501 Zn-dependent protease with chaperone function YP_003065524.1 COG0142 Geranylgeranyl pyrophosphate synthase YP_003065525.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain YP_003065526.1 COG0765 ABC-type amino acid transport system, permease component YP_003065527.1 COG3306 Glycosyltransferase involved in LPS biosynthesis YP_003065528.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase YP_003065529.2 COG1862 Preprotein translocase subunit YajC YP_003065530.2 COG0008 Glutamyl- and glutaminyl-tRNA synthetases YP_003065531.1 COG1190 Lysyl-tRNA synthetase (class II) YP_003065533.1 COG0820 Predicted Fe-S-cluster redox enzyme YP_003065535.1 COG1564 Thiamine pyrophosphokinase YP_003065536.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains YP_003065560.1 COG1396 Predicted transcriptional regulators YP_003065561.1 COG0305 Replicative DNA helicase YP_003065562.1 COG0305 Replicative DNA helicase YP_003065565.1 COG3756 Uncharacterized protein conserved in bacteria YP_003065571.1 COG0760 Parvulin-like peptidyl-prolyl isomerase YP_003065573.1 COG1385 Uncharacterized protein conserved in bacteria YP_003065574.1 COG3572 Gamma-glutamylcysteine synthetase YP_003065575.1 COG3153 Predicted acetyltransferase YP_003065576.1 COG1219 ATP-dependent protease Clp, ATPase subunit YP_003065578.1 COG0259 Pyridoxamine-phosphate oxidase YP_003065579.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) YP_003065580.1 COG0042 tRNA-dihydrouridine synthase YP_003065582.1 COG3037 Uncharacterized protein conserved in bacteria YP_003065583.1 COG0415 Deoxyribodipyrimidine photolyase YP_003065584.1 COG1301 Na+/H+-dicarboxylate symporters YP_003065585.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_003065586.2 COG0497 ATPase involved in DNA repair YP_003065587.1 COG4105 DNA uptake lipoprotein YP_003065588.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase YP_003065589.1 COG0206 Cell division GTPase YP_003065590.1 COG0849 Actin-like ATPase involved in cell division YP_003065591.1 COG1589 Cell division septal protein YP_003065592.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes YP_003065604.1 COG1961 Site-specific recombinases, DNA invertase Pin homologs YP_003065606.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases YP_003065608.2 COG0553 Superfamily II DNA/RNA helicases, SNF2 family YP_003065609.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) YP_003065611.1 COG0194 Guanylate kinase YP_003065619.1 COG0840 Methyl-accepting chemotaxis protein YP_003065625.1 COG0740 Protease subunit of ATP-dependent Clp proteases YP_003065630.1 COG2801 Transposase and inactivated derivatives YP_003065631.1 COG1396 Predicted transcriptional regulators YP_003065636.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase YP_003065638.1 COG3378 Predicted ATPase