-- dump date   	20120504_140602
-- class       	Genbank::misc_feature
-- table       	misc_feature_note
-- id	note
192222000001	3 probable transmembrane helices predicted for Cj0014c by TMHMM2.0 at aa 12-34, 76-98 and 111-130
192222000002	5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35, 50-67, 72-91, 111-133 and 154-176
192222000003	2 probable transmembrane helices predicted for Cj0019c by TMHMM2.0 at aa 10-32 and 239-261
192222000004	11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29, 41-63, 83-105, 126-148,182-204, 225-247, 267-289, 302-324, 339-361, 374-396 and 401-423
192222000005	12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35, 50-72, 84-106, 110-127,140-162, 167-189, 219-241, 256-278, 285-307, 317-339,346-368 and 372-394
192222000006	2 probable transmembrane helices predicted for Cj0038c by TMHMM2.0 at aa 17-39 and 43-60
192222000007	2 probable transmembrane helices predicted for Cj0062c by TMHMM2.0 at aa 7-26 and 32-54
192222000008	13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37, 42-61, 76-98, 119-150,165-187, 194-216, 255-272, 297-319, 372-391, 403-425,452-474, 495-517 and 532-554
192222000009	2 probable transmembrane helices predicted for Cj0124c by TMHMM2.0 at aa 5-27 and 42-64
192222000010	7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35, 55-77, 90-112, 132-150,171-200, 215-237 and 239-261
192222000011	4 probable transmembrane helices predicted for Cj0157c by TMHMM2.0 at aa 10-29, 46-68, 78-97 and 109-131
192222000012	8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34, 44-63, 96-118, 138-160,165-187, 207-229, 234-256 and 271-293
192222000013	6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23, 36-58, 63-85, 105-127,131-153 and 166-185
192222000014	12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35, 69-91, 104-124, 144-166,187-209, 241-263, 292-314, 329-351, 371-393, 408-430,451-473 and 505-527
192222000015	7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37, 50-69, 84-103, 124-146,151-173, 186-203 and 213-231
192222000016	3 probable transmembrane helices predicted for Cj0232c by TMHMM2.0 at aa 15-37, 42-64 and 94-116
192222000017	2 probable transmembrane helices predicted for Cj0235c by TMHMM2.0 at aa 5-22 and 49-71
192222000018	6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54, 59-76, 89-111, 116-138,145-167 and 171-190
192222000019	12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35, 55-77, 84-103, 108-130,151-173, 186-208, 238-260, 275-297, 302-324, 334-356,368-390 and 405-427
192222000020	2 probable transmembrane helices predicted for Cj0260c by TMHMM2.0 at aa 12-34 and 38-60
192222000021	2 probable transmembrane helices predicted for Cj0262c by TMHMM2.0 at aa 15-37 and 298-317
192222000022	2 probable transmembrane helices predicted for Cj0266c by TMHMM2.0 at aa 5-27 and 34-56
192222000023	2 probable transmembrane helices predicted for Cj0267c by TMHMM2.0 at aa 15-37 and 44-66
192222000024	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.8e-34
192222000025	12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31, 41-63, 72-94, 98-120,141-163, 178-195, 247-269, 284-303, 310-332, 337-359,364-386 and 401-423
192222000026	5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37, 49-71, 86-108, 147-169 and 195-217
192222000027	4 probable transmembrane helices predicted for Cj0309c by TMHMM2.0 at aa 3-20, 30-49, 56-78 and 84-103
192222000028	4 probable transmembrane helices predicted for Cj0310c by TMHMM2.0 at aa 7-28, 33-55, 60-82 and 86-108
192222000029	3 probable transmembrane helices predicted for Cj0337c by TMHMM2.0 at aa 28-50, 147-169 and 179-201
192222000030	4 probable transmembrane helices predicted for Cj0341c by TMHMM2.0 at aa 15-37, 44-66, 96-118 and 125-144
192222000031	9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31, 41-63, 75-92, 97-119,131-148, 152-169, 174-193, 203-225 and 237-259
192222000032	5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27, 85-107, 117-139, 144-163 and 173-195
192222000033	13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32, 342-361, 366-388,393-415, 445-467, 479-501, 516-533, 540-562, 866-883,890-912, 922-944, 965-987 and 1002-1024
192222000034	5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31, 58-80, 127-149, 164-186 and 300-322
192222000035	6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26, 36-55, 67-86, 101-123,135-149 and 153-171
192222000036	10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28, 38-56, 65-87, 97-116,121-143, 156-173, 185-207, 217-239, 259-281 and 285-304
192222000037	6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24, 48-70, 82-99, 122-139,146-163 and 173-192
192222000038	10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42, 63-85, 90-108, 129-147,162-184, 189-211, 226-248, 255-277, 282-304 and 331-350
192222000039	2 probable transmembrane helices predicted for Cj0457c by TMHMM2.0 at aa 7-24 and 39-58
192222000040	12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43, 48-70, 77-99, 103-122,143-165, 169-191, 211-233, 248-270, 282-299, 303-325,346-368 and 372-391
192222000041	9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45, 47-66, 86-108, 115-137,152-174, 187-209, 219-240, 283-302 and 317-339
192222000042	5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38, 71-93, 105-127, 160-182 and 195-217
192222000043	7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27, 34-56, 69-87, 92-114,119-141, 153-172 and 176-195
192222000044	11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27, 37-59, 87-109, 135-157,168-190, 217-239, 252-274, 296-318, 339-361, 381-403 and 424-446
192222000045	8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199, 211-233, 248-270,290-321, 331-353, 365-382, 386-405 and 418-437
192222000046	11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22, 32-66, 73-95, 110-132,144-163, 183-205, 236-258, 319-341, 348-370, 396-415 and 422-444
192222000047	12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66, 76-95, 100-122, 137-159,166-188, 215-237, 249-267, 277-296, 350-372, 392-414,427-446 and 456-478
192222000048	4 probable transmembrane helices predicted for Cj0721c by TMHMM2.0 at aa 7-29, 49-68, 88-110 and 125-147
192222000049	7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26, 61-83, 93-115, 138-160,164-186, 279-301 and 311-333
192222000050	2 probable transmembrane helices predicted for Cj0726c by TMHMM2.0 at aa 267-289 and 299-321
192222000051	7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79, 92-114, 119-141, 184-206,226-248, 260-277 and 282-301
192222000052	3 probable transmembrane helices predicted for Cj0795c by TMHMM2.0 at aa 7-29, 49-71 and 95-117
192222000053	3 probable transmembrane helices predicted for Cj0808c by TMHMM2.0 at aa 5-26, 47-69 and 74-96
192222000054	5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26, 39-61, 76-98, 184-206 and 216-235
192222000055	13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44, 49-71, 106-128, 149-171,186-208, 220-237, 242-259, 306-328, 358-377, 390-412,434-456, 530-547 and 551-573
192222000056	2 probable transmembrane helices predicted for Cj0844c by TMHMM2.0 at aa 7-29 and 67-89
192222000057	12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34, 44-63, 70-89, 99-121,134-156, 160-179, 204-226, 236-258, 265-284, 288-310,330-352 and 357-379
192222000058	4 probable transmembrane helices predicted for Cj0851c by TMHMM2.0 at aa 7-22, 32-54, 104-126 and 136-158
192222000059	2 probable transmembrane helices predicted for Cj0852c by TMHMM2.0 at aa 29-51 and 61-79
192222000060	7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43, 48-70, 82-102, 122-144,214-236, 251-273 and 298-320
192222000061	3 probable transmembrane helices predicted for Cj0886c by TMHMM2.0 at aa 13-35, 50-72 and 85-107
192222000062	2 probable transmembrane helices predicted for Cj0889c by TMHMM2.0 at aa 7-26 and 134-156
192222000063	9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49, 85-107, 149-171, 199-221,231-253, 323-345, 371-393, 405-422 and 437-459
192222000064	16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26, 36-58, 87-109, 119-138,159-181, 191-213, 218-240, 255-277, 284-306, 321-343,364-386, 465-487, 508-530, 540-562, 575-594 and 661-683
192222000065	3 probable transmembrane helices predicted for Cj0919c by TMHMM2.0 at aa 23-45, 66-88 and 186-208
192222000066	3 probable transmembrane helices predicted for Cj0920c by TMHMM2.0 at aa 47-69, 90-112 and 214-236
192222000067	11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25, 35-57, 87-109, 133-155,167-189, 216-238, 251-273, 298-320, 341-363, 383-402 and 423-445
192222000068	11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25, 40-62, 83-105, 139-161,174-196, 216-238, 251-273, 299-321, 342-364, 384-401 and 421-443
192222000069	13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29, 49-71, 84-103, 107-129,142-164, 179-201, 239-258, 273-295, 304-326, 330-352,365-387, 391-413 and 779-801
192222000070	6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48, 68-90, 102-124, 134-156,177-199 and 233-255
192222000071	4 probable transmembrane helices predicted for Cj0941c by TMHMM2.0 at aa 21-43, 266-288, 314-336 and 362-384
192222000072	6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29, 33-55, 75-97, 112-134,146-168 and 172-194
192222000073	2 probable transmembrane helices predicted for Cj0952c by TMHMM2.0 at aa 10-32 and 175-197
192222000074	5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32, 332-354, 400-422, 442-459 and 479-501
192222000075	12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29, 44-66, 79-98, 103-122,142-164, 179-198, 232-254, 269-291, 298-315, 320-342,354-376 and 380-399
192222000076	2 probable transmembrane helices predicted for Cj0986c by TMHMM2.0 at aa 2-19 and 29-51
192222000077	9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31, 51-73, 80-97, 103-125,134-156, 171-188, 212-234, 256-273 and 285-307
192222000078	11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34, 44-63, 83-100, 105-127,134-153, 163-185, 197-219, 234-256, 269-288, 303-325 and 338-360
192222000079	5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29, 44-66, 73-95, 105-124 and 131-153
192222000080	2 probable transmembrane helices predicted for Cj1005c by TMHMM2.0 at aa 6-23 and 88-110
192222000081	3 probable transmembrane helices predicted for Cj1007c by TMHMM2.0 at aa 221-243, 264-286 and 301-320
192222000082	12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32, 47-66, 78-100, 771-793,805-827, 837-859, 864-883, 910-932, 953-975, 990-1008,1015-1037 and 1052-1071
192222000083	8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29, 34-51, 58-80, 104-126,133-155, 170-191, 257-279 and 307-324
192222000084	7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37, 58-80, 95-117, 138-160,191-213, 234-256 and 271-293
192222000085	4 probable transmembrane helices predicted for Cj1022c by TMHMM2.0 at aa 13-35, 63-85, 119-136 and 146-163
192222000086	12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29, 44-66, 73-92, 96-118,131-153, 157-179, 206-228, 238-260, 267-289, 295-317,330-349 and 359-381
192222000087	6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27, 40-62, 66-88, 109-131,141-163 and 168-190
192222000088	2 probable transmembrane helices predicted for Cj1053c by TMHMM2.0 at aa 5-22 and 32-49
192222000089	5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27, 55-77, 90-112, 149-171 and 178-200
192222000090	4 probable transmembrane helices predicted for Cj1092c by TMHMM2.0 at aa 13-35, 137-154, 236-258 and 268-290
192222000091	4 probable transmembrane helices predicted for Cj1093c by TMHMM2.0 at aa 7-29, 359-381, 388-410 and 482-504
192222000092	6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29, 44-66, 79-101, 119-141,148-170 and 185-202
192222000093	8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29, 33-55, 75-92, 97-114,126-148, 158-175, 188-207 and 211-233
192222000094	2 probable transmembrane helices predicted for Cj1116c by TMHMM2.0 at aa 22-41 and 128-147
192222000095	4 probable transmembrane helices predicted for Cj1119c by TMHMM2.0 at aa 161-183, 196-218, 239-261 and 266-288
192222000096	3 probable transmembrane helices predicted for Cj1120c by TMHMM2.0 at aa 9-28, 38-60 and 80-102
192222000097	3 probable transmembrane helices predicted for Cj1122c by TMHMM2.0 at aa 33-52, 73-95 and 115-137
192222000098	11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34, 97-119, 126-143, 153-170,177-194, 198-215, 222-244, 259-281, 329-347, 373-390 and 403-425
192222000099	6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42, 63-85, 146-168, 175-197,261-280 and 287-304
192222000100	8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188, 198-215, 235-254,259-277, 410-432, 447-469, 741-760 and 764-781
192222000101	2 probable transmembrane helices predicted for Cj1158c by TMHMM2.0 at aa 21-43 and 53-71
192222000102	8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105, 115-137, 144-166,171-190, 328-345, 360-382, 650-672 and 677-694
192222000103	6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62, 72-91, 104-126, 141-163,176-198 and 202-224
192222000104	5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23, 30-48, 53-75, 87-109 and 129-151
192222000105	5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139, 144-161, 168-187,197-216 and 229-251
192222000106	4 probable transmembrane helices predicted for Cj1168c by TMHMM2.0 at aa 13-35, 55-77, 139-161 and 171-193
192222000107	7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32, 37-59, 72-94, 116-138,143-162, 177-199 and 211-233
192222000108	2 probable transmembrane helices predicted for Cj1184c by TMHMM2.0 at aa 7-29 and 346-365
192222000109	10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61, 95-117, 124-146, 156-178,191-213, 258-280, 301-320, 325-344, 357-376 and 386-408
192222000110	11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42, 57-79, 103-134, 144-166,189-211, 226-248, 255-271, 281-303, 324-346, 366-395 and 408-427
192222000111	2 probable transmembrane helices predicted for Cj1203c by TMHMM2.0 at aa 2-24 and 29-51
192222000112	6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37, 76-98, 103-122, 134-156,176-198 and 205-222
192222000113	6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42, 86-108, 123-145, 157-176,191-213 and 220-242
192222000114	2 probable transmembrane helices predicted for Cj1222c by TMHMM2.0 at aa 5-27 and 159-178
192222000115	2 probable transmembrane helices predicted for Cj1226c by TMHMM2.0 at aa 6-28 and 135-157
192222000116	2 probable transmembrane helices predicted for Cj1245c by TMHMM2.0 at aa 2-19 and 34-51
192222000117	12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29, 44-66, 78-100, 104-126,133-155, 165-187, 207-229, 239-261, 273-295, 300-322,343-360 and 364-383
192222000118	4 probable transmembrane helices predicted for Cj1265c by TMHMM2.0 at aa 25-44, 64-86, 131-153 and 186-208
192222000119	4 probable transmembrane helices predicted for Cj1276c by TMHMM2.0 at aa 7-29, 143-165, 199-221 and 241-263
192222000120	7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41, 48-67, 71-88, 95-114,119-138, 159-181 and 185-204
192222000121	3 probable transmembrane helices predicted for Cj1356c by TMHMM2.0 at aa 13-35, 131-153 and 166-183
192222000122	3 probable transmembrane helices predicted for Cj1412c by TMHMM2.0 at aa 115-137, 142-164 and 341-363
192222000123	2 probable transmembrane helices predicted for Cj1445c by TMHMM2.0 at aa 22-44 and 346-368
192222000124	6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46, 56-78, 107-129, 144-166,171-193 and 227-249
192222000125	4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178, 209-231, 246-268 and 357-379
192222000126	2 probable transmembrane helices predicted for Cj1484c by TMHMM2.0 at aa 9-31 and 169-188
192222000127	2 probable transmembrane helices predicted for Cj1487c by TMHMM2.0 at aa 10-30 and 63-85
192222000128	12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35, 60-82, 102-124, 134-156,163-182, 216-238, 251-273, 283-305, 317-339, 354-376,396-418 and 438-460
192222000129	6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35, 50-72, 79-101, 130-152,159-181 and 196-218
192222000130	12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35, 80-102, 133-155, 165-187,200-222, 237-259, 280-302, 330-352, 373-395, 405-427,434-453 and 458-480
192222000131	2 probable transmembrane helices predicted for Cj1506c by TMHMM2.0 at aa 7-29 and 328-350
192222000132	6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24, 56-78, 99-121, 136-156,194-216 and 240-262
192222000133	5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65, 72-94, 109-131, 165-187 and 212-234
192222000134	10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24, 34-56, 69-88, 98-120,133-150, 155-177, 186-205, 220-242, 247-269 and 273-295
192222000135	12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35, 42-64, 79-98, 111-133,162-184, 205-227, 237-259, 266-288, 323-345, 365-387,397-419 and 439-461
192222000136	14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20, 27-49, 69-91, 98-115,119-141, 148-170, 200-222, 229-251, 261-283, 290-312,317-339, 359-381, 394-416 and 437-459
192222000137	16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23, 30-52, 76-98, 105-124,128-150, 163-182, 202-224, 236-258, 268-290, 297-319,323-342, 363-385, 398-420, 441-463, 478-500 and 573-595
192222000138	3 probable transmembrane helices predicted for Cj1569c by TMHMM2.0 at aa 5-21, 26-48 and 58-80
192222000139	5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24, 28-47, 54-76, 91-110 and 141-163
192222000140	8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32, 78-100, 120-142, 155-177,192-214, 246-268, 272-294 and 311-330
192222000141	3 probable transmembrane helices predicted for Cj1579c by TMHMM2.0 at aa 10-32, 69-91 and 96-118
192222000142	6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29, 69-91, 103-122, 126-145,176-198 and 231-253
192222000143	6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24, 96-118, 131-153, 179-198,236-258 and 278-300
192222000144	3 probable transmembrane helices predicted for Cj1587c by TMHMM2.0 at aa 13-35, 50-72 and 138-160
192222000145	12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35, 50-72, 85-107, 117-139,151-173, 183-205, 241-263, 278-300, 305-327, 332-354,367-389 and 404-426
192222000146	11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35, 39-56, 84-106, 130-152,159-181, 201-223, 243-265, 291-313, 334-351, 361-383 and 395-412
192222000147	11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34, 61-83, 96-118, 128-145,157-179, 183-205, 218-240, 260-282, 293-315, 330-352 and 365-387
192222000148	10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38, 58-80, 92-114, 124-146,153-175, 180-199, 206-228, 289-311, 324-346 and 361-378
192222000149	11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27, 34-56, 61-83, 96-129,149-171, 184-206, 232-254, 275-292, 302-324, 333-355 and 365-387
192222000150	10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31, 61-83, 104-126, 141-163,170-191, 206-228, 257-279, 299-321, 357-376 and 381-398
192222000151	chromosomal replication initiation protein; Reviewed; Region: dnaA; PRK00149
192222000152	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222000153	Walker A motif; other site
192222000154	ATP binding site [chemical binding]; other site
192222000155	Walker B motif; other site
192222000156	C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple...; Region: Bac_DnaA_C; cd06571
192222000157	DnaA box-binding interface [nucleotide binding]; other site
192222000158	HMMPfam hit to PF00308, Bacterial dnaA protein,score 4.2e-124
192222000159	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000160	DNA polymerase III subunit beta; Validated; Region: PRK05643
192222000161	Beta clamp domain.  The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria.  The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cd00140
192222000162	putative DNA binding surface [nucleotide binding]; other site
192222000163	dimer interface [polypeptide binding]; other site
192222000164	beta-clamp/clamp loader binding surface; other site
192222000165	beta-clamp/translesion DNA polymerase binding surface; other site
192222000166	HMMPfam hit to PF00712, DNA polymerase III beta subunit, N-te, score 1.9e-11
192222000167	HMMPfam hit to PF02767, DNA polymerase III beta subunit, cent, score 4e-11
192222000168	HMMPfam hit to PF02768, DNA polymerase III beta subunit, C-te, score 2.7e-05
192222000169	DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939
192222000170	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075
192222000171	TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E. coli DNA gyrase and E. coli Topoisomerase IV which are; Region: TopoII_Trans_DNA_gyrase; cd00822
192222000172	anchoring element; other site
192222000173	dimer interface [polypeptide binding]; other site
192222000174	ATP binding site [chemical binding]; other site
192222000175	TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit. TopoIIA enzymes cut both strands of the...; Region: TOPRIM_TopoIIA_GyrB; cd03366
192222000176	active site
192222000177	putative metal-binding site [ion binding]; other site
192222000178	DNA gyrase B subunit, carboxyl terminus; Region: DNA_gyraseB_C; pfam00986
192222000179	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and H, score 1.1e-30
192222000180	HMMPfam hit to PF00204, DNA gyrase B, score 6.7e-81
192222000181	HMMPfam hit to PF01751, Toprim domain, score 1e-08
192222000182	PS00177 DNA topoisomerase II signature
192222000183	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000184	HMMPfam hit to PF00986, DNA gyrase B subunit,carboxyl terminus, score 3.1e-43
192222000185	quinohemoprotein amine dehydrogenase, alpha subunit; Region: QH_alpha; TIGR03908
192222000186	PS00190 Cytochrome c family heme-binding site signature
192222000187	sulfite oxidase; Provisional; Region: PLN00177
192222000188	Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate...; Region: SO_family_Moco_dimer; cd02110
192222000189	Moco binding site; other site
192222000190	metal coordination site [ion binding]; other site
192222000191	dimerization interface [polypeptide binding]; other site
192222000192	HMMPfam hit to PF03404, Mo-co oxidoreductase dimerisation doma, score 6.8e-19
192222000193	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 2.1e-14
192222000194	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000195	1 probable transmembrane helix predicted for Cj0005c by TMHMM2.0 at aa 13-32
192222000196	Predicted permease [General function prediction only]; Region: COG2056
192222000197	Na+-H+ antiporter family; Region: Na_H_antiport_2; cl15264
192222000198	11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44, 65-87, 115-134, 146-168,188-210, 236-253, 257-275, 288-305, 327-349, 361-383 and 412-434
192222000199	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000200	HMMPfam hit to PF03553, Na+/H+ antiporter family,score 4.4e-90
192222000201	glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750
192222000202	Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The...; Region: GltS; cd00713
192222000203	active site
192222000204	dimer interface [polypeptide binding]; other site
192222000205	Glutamate synthase central domain; Region: Glu_syn_central; pfam04898
192222000206	Glutamate synthase (GltS) FMN-binding domain.  GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast...; Region: GltS_FMN; cd02808
192222000207	active site
192222000208	FMN binding site [chemical binding]; other site
192222000209	substrate binding site [chemical binding]; other site
192222000210	3Fe-4S cluster binding site [ion binding]; other site
192222000211	gltb_C. This domain is found at the C-terminus of the large subunit (gltB) of glutamate synthase (GltS). GltS encodes a complex iron-sulfur flavoprotein that catalyzes the synthesis of L-glutamate from L-glutamine and 2-oxoglutarate. It requires the...; Region: gltB_C; cd00982
192222000212	domain interface; other site
192222000213	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 5.9e-222
192222000214	HMMPfam hit to PF04898, Glutamate synthase central domain, score 1.8e-181
192222000215	HMMPfam hit to PF01645, Conserved region in glutamate synthas, score 1e-224
192222000216	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000217	HMMPfam hit to PF01493, GXGXG motif, score 4.1e-72
192222000218	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature
192222000219	Protein of unknown function DUF262; Region: DUF262; cl14890
192222000220	HMMPfam hit to PF03235, Protein of unknown function DUF262, score 0.00029
192222000221	glutamate synthase subunit beta; Reviewed; Region: gltD; PRK12810
192222000222	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000223	NAD(P) binding site [chemical binding]; other site
192222000224	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreducta, score 2.4e-23
192222000225	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000226	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000227	bacterial Ribonuclease HII-like; Region: RNase_HII_bacteria_HII_like; cd07182
192222000228	RNA/DNA hybrid binding site [nucleotide binding]; other site
192222000229	active site
192222000230	HMMPfam hit to PF01351, Ribonuclease HII, score 7.2e-39
192222000231	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000232	Helix-hairpin-helix motif; Region: HHH_3; pfam12836
192222000233	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cl14786
192222000234	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 2.1
192222000235	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 1.5e-06
192222000236	1 probable transmembrane helix predicted for Cj0011c by TMHMM2.0 at aa 4-26
192222000237	Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small; Region: DSRD; cd00974
192222000238	non-heme iron binding site [ion binding]; other site
192222000239	dimer interface [polypeptide binding]; other site
192222000240	Rubrerythrin, ferritin-like diiron-binding domain; Region: Rubrerythrin; cd01041
192222000241	binuclear metal center [ion binding]; other site
192222000242	HMMPfam hit to PF00301, Rubredoxin, score 1.9e-05
192222000243	HMMPfam hit to PF02915, Rubrerythrin, score 6e-43
192222000244	HMMPfam hit to PF06397, Desulfoferrodoxin,N-terminal domain, score 4.4e-20
192222000245	Dehydratase family; Region: ILVD_EDD; cl00340
192222000246	HMMPfam hit to PF00920, Dehydratase family, score 0
192222000247	PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1
192222000248	PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2
192222000249	Protein of unknown function (DUF1440); Region: DUF1440; cl01380
192222000250	HMMPfam hit to PF07274, Protein of unknown function (DUF1440), score 1.1e-96
192222000251	Competence protein ComGF [Intracellular trafficking and secretion]; Region: ComGF; COG4940
192222000252	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076
192222000253	ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In...; Region: ExsB; cd01995
192222000254	Ligand Binding Site [chemical binding]; other site
192222000255	HMMPfam hit to PF06508, ExsB, score 4.4e-41
192222000256	Disulfide bond formation protein DsbB; Region: DsbB; cl00649
192222000257	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000258	HMMPfam hit to PF02600, Disulfide bond formation protein DsbB, score 1.9e-17
192222000259	1 probable transmembrane helix predicted for Cj0018c by TMHMM2.0 at aa 25-44
192222000260	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222000261	dimer interface [polypeptide binding]; other site
192222000262	putative CheW interface [polypeptide binding]; other site
192222000263	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 5.5e-10
192222000264	HMMPfam hit to PF00672, HAMP domain, score 1.8e-06
192222000265	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
192222000266	HMMPfam hit to PF00034, Cytochrome c, score 0.0083
192222000267	PS00190 Cytochrome c family heme-binding site signature
192222000268	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 3.8e-69
192222000269	PS00190 Cytochrome c family heme-binding site signature
192222000270	Fumarylacetoacetate (FAA) hydrolase family; Region: FAA_hydrolase; cl11421
192222000271	HMMPfam hit to PF01557, Fumarylacetoacetate (FAA) hydrolase fam, score 1.4e-44
192222000272	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
192222000273	PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and...; Region: PseudoU_synth_RluCD_like; cd02869
192222000274	active site
192222000275	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 7.1e-43
192222000276	PS01129 Rlu family of pseudouridine synthase signature
192222000277	adenylosuccinate lyase; Provisional; Region: PRK08470
192222000278	Adenylsuccinate lyase (ASL)_subgroup 1; Region: Adenylsuccinate_lyase_1; cd01360
192222000279	tetramer interface [polypeptide binding]; other site
192222000280	active site
192222000281	Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions; Region: Lyase_I_like; cl00013
192222000282	HMMPfam hit to PF00206, Lyase, score 3.7e-45
192222000283	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000284	PS00163 Fumarate lyases signature
192222000285	ribonucleotide-diphosphate reductase subunit alpha; Validated; Region: PRK08447
192222000286	ATP cone domain; Region: ATP-cone; pfam03477
192222000287	Class I ribonucleotide reductase; Region: RNR_I; cd01679
192222000288	active site
192222000289	dimer interface [polypeptide binding]; other site
192222000290	catalytic residues [active]
192222000291	effector binding site; other site
192222000292	R2 peptide binding site; other site
192222000293	HMMPfam hit to PF03477, ATP cone domain, score 6.2e-18
192222000294	HMMPfam hit to PF00317, Ribonucleotide reductase,all-alpha d, score 3.2e-35
192222000295	HMMPfam hit to PF02867, Ribonucleotide reductase,barrel doma, score 7.5e-129
192222000296	PS00089 Ribonucleotide reductase large subunit signature
192222000297	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
192222000298	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 2.4e-40
192222000299	Thymidylate synthase complementing protein; Region: Thy1; cl03630
192222000300	HMMPfam hit to PF02511, Thymidylate synthase complementing protein, score 6.3e-43
192222000301	CTP synthetase; Validated; Region: pyrG; PRK05380
192222000302	CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent...; Region: CTGs; cd03113
192222000303	Catalytic site [active]
192222000304	active site
192222000305	UTP binding site [chemical binding]; other site
192222000306	Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Region: GATase1_CTP_Synthase; cd01746
192222000307	active site
192222000308	putative oxyanion hole; other site
192222000309	catalytic triad [active]
192222000310	HMMPfam hit to PF06418, CTP synthase N-terminus,score 4.3e-204
192222000311	1 probable transmembrane helix predicted for Cj0027 by TMHMM2.0 at aa 7-29
192222000312	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 3.5e-57
192222000313	PS00442 Glutamine amidotransferases class-I active site
192222000314	single-stranded-DNA-specific exonuclease RecJ; Region: recJ; TIGR00644
192222000315	DHH family; Region: DHH; pfam01368
192222000316	DHHA1 domain; Region: DHHA1; pfam02272
192222000317	HMMPfam hit to PF01368, DHH family, score 1e-48
192222000318	HMMPfam hit to PF02272, DHHA1 domain, score 1.5e-16
192222000319	Type II (periplasmic) bacterial L-asparaginase; Region: L-asparaginase_II; cd08964
192222000320	active site
192222000321	homodimer interface [polypeptide binding]; other site
192222000322	homotetramer interface [polypeptide binding]; other site
192222000323	PS00144 Asparaginase / glutaminase active site signature 1
192222000324	HMMPfam hit to PF00710, Asparaginase, score 1.5e-132
192222000325	PS00917 Asparaginase / glutaminase active site signature 2
192222000326	Protein of unknown function DUF91; Region: DUF91; cl00709
192222000327	Type II restriction enzyme, methylase subunits [Defense mechanisms]; Region: COG1002
192222000328	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000329	TaqI-like C-terminal specificity domain; Region: TaqI_C; pfam12950
192222000330	Pentapeptide repeats (9 copies); Region: Pentapeptide_3; pfam13576
192222000331	6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393, 415-434, 467-489,494-513, 518-537 and 557-579
192222000332	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000333	Protein of unknown function (DUF541); Region: SIMPL; cl01077
192222000334	HMMPfam hit to PF04402, Protein of unknown function (DUF541), score 2.4e-60
192222000335	1 probable transmembrane helix predicted for Cj0034c by TMHMM2.0 at aa 5-23
192222000336	drug resistance transporter, Bcr/CflA subfamily; Region: efflux_Bcr_CflA; TIGR00710
192222000337	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222000338	putative substrate translocation pore; other site
192222000339	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000340	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.8e-52
192222000341	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4487
192222000342	Uncharacterized protein conserved in bacteria (DUF2130); Region: DUF2130; pfam09903
192222000343	Cytochrome c [Energy production and conversion]; Region: COG3258
192222000344	Cytochrome c; Region: Cytochrom_C; cl11414
192222000345	Cytochrome c; Region: Cytochrom_C; cl11414
192222000346	HMMPfam hit to PF00034, Cytochrome c, score 0.0012
192222000347	PS00190 Cytochrome c family heme-binding site signature
192222000348	PS00190 Cytochrome c family heme-binding site signature
192222000349	Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; Region: TypA_BipA; cd01891
192222000350	GTP-binding protein TypA/BipA; Region: TypA_BipA; TIGR01394
192222000351	G1 box; other site
192222000352	putative GEF interaction site [polypeptide binding]; other site
192222000353	GTP/Mg2+ binding site [chemical binding]; other site
192222000354	Switch I region; other site
192222000355	G2 box; other site
192222000356	G3 box; other site
192222000357	Switch II region; other site
192222000358	G4 box; other site
192222000359	G5 box; other site
192222000360	BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu.  BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a...; Region: BipA_TypA_II; cd03691
192222000361	BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants.  BipA is a highly...; Region: BipA_TypA_C; cd03710
192222000362	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 7.8e-30
192222000363	HMMPfam hit to PF03144, Elongation factor Tu domain, score 6.7e-12
192222000364	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 6.7e-70
192222000365	PS00301 GTP-binding elongation factors signature
192222000366	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000367	Flagellar hook-length control protein FliK; Region: Flg_hook; cl15269
192222000368	Flagellar hook capping protein - N-terminal region; Region: FlgD; pfam03963
192222000369	FlgD Tudor-like domain; Region: FLgD_tudor; pfam13861
192222000370	FlgD Ig-like domain; Region: FlgD_ig; cl15790
192222000371	HMMPfam hit to PF03963, Flagellar hook capping protein, score 1.4e-60
192222000372	Flagellar hook protein FlgE [Cell motility and secretion]; Region: FlgE; COG1749
192222000373	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222000374	HMMPfam hit to PF00460, Flagella basal body rod protein, score 1.4e-08
192222000375	PS00588 Flagella basal body rod proteins signature
192222000376	HMMPfam hit to PF07559, Flagellar basal body protein FlaE, score 1.9e-29
192222000377	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 8.8e-18
192222000378	Protein of unknown function (DUF342); Region: DUF342; pfam03961
192222000379	Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cl15774
192222000380	octamerization interface [polypeptide binding]; other site
192222000381	diferric-oxygen binding site [ion binding]; other site
192222000382	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0046
192222000383	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0029
192222000384	Original (2000) note: Cj0046, probable transmembrane transport protein pseudogene, len: 1559 bp; fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa), fasta scores; opt: 278 z-score: 498.4 E(): 1.7e-20, 45.0% identity in 80 aa overlap, and YBHI_ECOLI (477 aa) fasta scores; opt: 196 z-score: 361.3 E(): 7.2e-13, 34.6% identity in 78 aa overlap. No Hp match; Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also, ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus,  added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other
192222000385	HMMPfam hit to PF00939, Sodium:sulfate symporter transmembrane, score 8.5e-118
192222000386	10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32, 64-86, 208-230, 260-282,287-309, 318-340, 355-377, 384-406, 411-433 and 440-462
192222000387	tRNA methyl transferase; Region: tRNA_Me_trans; pfam03054
192222000388	tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs; Region: tRNA_Me_trans; cd01998
192222000389	Ligand Binding Site [chemical binding]; other site
192222000390	HMMPfam hit to PF03054, tRNA methyl transferase,score 1.3e-132
192222000391	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
192222000392	HMMPfam hit to PF03641, Possible lysine decarboxylase, score 2.2e-53
192222000393	PS01164 Copper amine oxidase topaquinone signature
192222000394	A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the 'double-glycine' leader peptides from the precursors of various bacteriocins; Region: Peptidase_C39G; cd02423
192222000395	putative active site [active]
192222000396	HMMPfam hit to PF03412, Peptidase C39 family, score 4.5e-11
192222000397	flagellar motor switch protein FliY; Validated; Region: PRK08432
192222000398	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
192222000399	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 6.1e-24
192222000400	flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666
192222000401	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
192222000402	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 0.00022
192222000403	HMMPfam hit to PF02154, Flagellar motor switch protein FliM, score 8.3e-105
192222000404	flagellar biosynthesis sigma factor; Validated; Region: fliA; PRK06986
192222000405	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
192222000406	HMMPfam hit to PF04545, Sigma-70, region, score 5.8e-19
192222000407	PS00716 Sigma-70 factors family signature 2
192222000408	HMMPfam hit to PF04542, Sigma-70 region, score 3.3e-12
192222000409	Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]; Region: flhG; COG0455
192222000410	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222000411	FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by...; Region: FleN-like; cd02038
192222000412	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 5.8e-21
192222000413	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000414	flagellar biosynthesis regulator FlhF; Validated; Region: flhF; PRK05703
192222000415	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222000416	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 1.9e-40
192222000417	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000418	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after...; Region: HPPK; cd00483
192222000419	catalytic center binding site [active]
192222000420	ATP binding site [chemical binding]; other site
192222000421	HMMPfam hit to PF01288,7,8-dihydro-6-hydroxymethylpterin-pyrophosph, score 3.1e-25
192222000422	PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature
192222000423	Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway...; Region: DHQase_II; cd00466
192222000424	trimer interface [polypeptide binding]; other site
192222000425	active site
192222000426	dimer interface [polypeptide binding]; other site
192222000427	HMMPfam hit to PF01220, Dehydroquinase class II,score 1.4e-74
192222000428	chlorohydrolase; Provisional; Region: PRK08418
192222000429	Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the...; Region: Met_dep_hydrolase_D; cd01312
192222000430	active site
192222000431	HMMPfam hit to PF01979, Amidohydrolase family,score 1.8e-68
192222000432	signal peptide peptidase SppA, 36K type; Region: SppA_dom; TIGR00706
192222000433	Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_N_C; cd07023
192222000434	tandem repeat interface [polypeptide binding]; other site
192222000435	oligomer interface [polypeptide binding]; other site
192222000436	active site residues [active]
192222000437	1 probable transmembrane helix predicted for Cj0068 by TMHMM2.0 at aa 13-35
192222000438	HMMPfam hit to PF01343, Peptidase family S49, score 1.4e-74
192222000439	Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]; Region: RimK; COG0189
192222000440	Original (2000) note: Cj0072c, possible iron-binding protein pseudogene, len: 98 aa; Weak similarity to members of the eukaryotic iron-binding hemerythrin family, e.g. HEMM_THEZO myohemerythrin (118 aa). Note that all of the iron-binding residues are conserved. No Hp match. Also similar to N-terminus of Cj1224 (50.5% identity in 91 aa overlap), Cj0241c (40.5% identity in 79 aa overlap) and Cj0045c (32.5% identity in 83 aa overlap). Contains one frameshift; Updated (2006) note: Pfam domains x2 PF01814 Hemerythrin HHE cation binding domain identified within CDS. Further support given to product function. Similar to many Campylobacter species designated as  methy-accepting chemotaxis protein and also iron-binding proteins. No specific characterisation with acceptable identity score has been carried out yet. Thus,  kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Cations
192222000441	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 2.9
192222000442	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.007
192222000443	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; cl00674
192222000444	HMMPfam hit to PF02589, Uncharacterized ACR, YkgG family COG1556, score 1.2e-29
192222000445	Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]; Region: COG1139
192222000446	Uncharacterized ACR, YkgG family COG1556; Region: DUF162; cl00674
192222000447	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
192222000448	Domain of unknown function (DUF3390); Region: DUF3390; pfam11870
192222000449	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.00065
192222000450	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222000451	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0015
192222000452	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222000453	PS00018 EF-hand calcium-binding domain
192222000454	Cysteine-rich domain; Region: CCG; pfam02754
192222000455	Cysteine-rich domain; Region: CCG; pfam02754
192222000456	HMMPfam hit to PF02754, Cysteine-rich domain, score 7.2e-19
192222000457	HMMPfam hit to PF02754, Cysteine-rich domain, score 5.1e-12
192222000458	glycolate transporter; Provisional; Region: PRK09695
192222000459	L-lactate permease; Region: Lactate_perm; cl00701
192222000460	HMMPfam hit to PF02652, L-lactate permease, score 1.2e-268
192222000461	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000462	Cytolethal distending toxin A/C family; Region: CDtoxinA; pfam03498
192222000463	HMMPfam hit to PF03499, Cytolethal distending toxin C, score 3.6e-81
192222000464	CdtB, the catalytic DNase I-like subunit of cytolethal distending toxin (CDT) protein; Region: CdtB; cd09081
192222000465	putative catalytic site [active]
192222000466	CdtC interface [polypeptide binding]; other site
192222000467	heterotrimer interface [polypeptide binding]; other site
192222000468	CdtA interface [polypeptide binding]; other site
192222000469	putative metal binding site [ion binding]; other site
192222000470	putative phosphate binding site [ion binding]; other site
192222000471	HMMPfam hit to PF03372,Endonuclease/Exonuclease/phosphatase fa, score 7.8e-23
192222000472	Cytolethal distending toxin A/C family; Region: CDtoxinA; pfam03498
192222000473	Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific...; Region: RICIN; cd00161
192222000474	putative sugar binding sites [chemical binding]; other site
192222000475	Q-X-W motif; other site
192222000476	HMMPfam hit to PF03498, Cytolethal distending toxin A, score 1.6e-33
192222000477	1 probable transmembrane helix predicted for Cj0079c by TMHMM2.0 at aa 5-22
192222000478	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000479	2 probable transmembrane helices predicted for Cj0080 by TMHMM2.0 at aa 10-29 and 42-64
192222000480	cytochrome d terminal oxidase subunit 1; Provisional; Region: PRK15097
192222000481	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562
192222000482	Bacterial Cytochrome Ubiquinol Oxidase; Region: Bac_Ubq_Cox; cl00562
192222000483	HMMPfam hit to PF01654, Bacterial Cytochrome Ubiquinol Oxidase, score 3.3e-191
192222000484	9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37, 56-78, 98-120, 127-149,186-208, 221-240, 391-413, 426-448 and 477-499
192222000485	cytochrome d ubiquinol oxidase subunit 2; Provisional; Region: PRK15003; cl12219
192222000486	Cytochrome oxidase subunit II; Region: Cyto_ox_2; pfam02322
192222000487	HMMPfam hit to PF02322, Cytochrome oxidase subunit II, score 3.5e-13
192222000488	9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31, 59-81, 86-108, 129-151,175-197, 210-229, 249-271, 284-306 and 332-354
192222000489	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
192222000490	aspartate racemase; Region: asp_race; TIGR00035
192222000491	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase,score 4.8e-67
192222000492	PS00924 Aspartate and glutamate racemases signature 2
192222000493	Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Region: UDG_F1; cd10027
192222000494	ligand binding site [chemical binding]; other site
192222000495	active site
192222000496	UGI interface [polypeptide binding]; other site
192222000497	catalytic site [active]
192222000498	HMMPfam hit to PF03167, Uracil DNA glycosylase superfamily, score 1.6e-73
192222000499	PS00130 Uracil-DNA glycosylase signature
192222000500	aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273
192222000501	Aspartase; Region: Aspartase; cd01357
192222000502	active sites [active]
192222000503	tetramer interface [polypeptide binding]; other site
192222000504	HMMPfam hit to PF00206, Lyase, score 1.2e-151
192222000505	PS00163 Fumarate lyases signature
192222000506	Anaerobic c4-dicarboxylate membrane transporter; Region: DcuA_DcuB; cl01040
192222000507	12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20, 25-42, 49-71, 91-113,134-156, 171-193, 230-249, 259-281, 301-323, 338-360,380-402 and 422-444
192222000508	HMMPfam hit to PF03605, Anaerobic c4-dicarboxylate membrane transpo, score 3.9e-245
192222000509	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000510	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3014
192222000511	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000512	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 1.4
192222000513	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.12
192222000514	Predicted periplasmic lipoprotein [General function prediction only]; Region: COG5633
192222000515	Putative periplasmic lipoprotein; Region: DUF1425; cd09030
192222000516	putative dimer interface [polypeptide binding]; other site
192222000517	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000518	TolB amino-terminal domain; Region: TolB_N; cl00639
192222000519	1 probable transmembrane helix predicted for Cj0091 by TMHMM2.0 at aa 7-26
192222000520	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000521	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000522	TolB amino-terminal domain; Region: TolB_N; cl00639
192222000523	Ribosomal prokaryotic L21 protein; Region: Ribosomal_L21p; cl00382
192222000524	HMMPfam hit to PF00829, Ribosomal prokaryotic L21 protein, score 3.6e-48
192222000525	PS01169 Ribosomal protein L21 signature
192222000526	Ribosomal L27 protein; Region: Ribosomal_L27; cl00359
192222000527	HMMPfam hit to PF01016, Ribosomal L27 protein,score 3.7e-54
192222000528	PS00831 Ribosomal protein L27 signature
192222000529	GTPase CgtA; Reviewed; Region: obgE; PRK12299
192222000530	GTP1/OBG; Region: GTP1_OBG; pfam01018
192222000531	Obg GTPase; Region: Obg; cd01898
192222000532	G1 box; other site
192222000533	GTP/Mg2+ binding site [chemical binding]; other site
192222000534	Switch I region; other site
192222000535	G2 box; other site
192222000536	G3 box; other site
192222000537	Switch II region; other site
192222000538	G4 box; other site
192222000539	G5 box; other site
192222000540	HMMPfam hit to PF01018, GTP1/OBG, score 2.7e-75
192222000541	HMMPfam hit to PF01926, GTPase of unknown function,score 2.7e-33
192222000542	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000543	PS00905 GTP1/OBG family signature
192222000544	AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine)...; Region: AAK_G5K_ProB; cd04242
192222000545	nucleotide binding site [chemical binding]; other site
192222000546	homotetrameric interface [polypeptide binding]; other site
192222000547	putative phosphate binding site [ion binding]; other site
192222000548	putative allosteric binding site; other site
192222000549	HMMPfam hit to PF00696, Amino acid kinase family,score 1e-41
192222000550	methionyl-tRNA formyltransferase; Reviewed; Region: fmt; PRK00005
192222000551	Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Region: FMT_core_Met-tRNA-FMT_N; cd08646
192222000552	putative active site [active]
192222000553	substrate binding site [chemical binding]; other site
192222000554	putative cosubstrate binding site; other site
192222000555	catalytic site [active]
192222000556	C-terminal domain of Formyltransferase and other enzymes; Region: Met_tRNA_FMT_C; cd08704
192222000557	substrate binding site [chemical binding]; other site
192222000558	HMMPfam hit to PF00551, Formyl transferase, score 4.4e-36
192222000559	HMMPfam hit to PF02911, Formyl transferase,C-terminal domain, score 8e-24
192222000560	biotin--protein ligase; Provisional; Region: PRK08477
192222000561	Biotin/lipoate A/B protein ligase family; Region: BPL_LplA_LipB; cl14057
192222000562	HMMPfam hit to PF03099, Biotin/lipoate A/B protein ligase famil, score 2e-13
192222000563	ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]; Region: Soj; COG1192
192222000564	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
192222000565	P-loop; other site
192222000566	Magnesium ion binding site [ion binding]; other site
192222000567	ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the...; Region: ParA; cd02042
192222000568	Magnesium ion binding site [ion binding]; other site
192222000569	HMMPfam hit to PF01656, CobQ/CobB/MinD/ParA nucleotide binding domai, score 9.4e-53
192222000570	ParB-like nuclease domain; Region: ParBc; cl02129
192222000571	ParB-like partition proteins; Region: parB_part; TIGR00180
192222000572	HMMPfam hit to PF02195, ParB-like nuclease domain,score 2.7e-34
192222000573	Plant ATP synthase F0; Region: YMF19; cl07975
192222000574	HMMPfam hit to PF00430, ATP synthase B/B' CF(0),score 1.5e-06
192222000575	1 probable transmembrane helix predicted for Cj0102 by TMHMM2.0 at aa 10-29
192222000576	Plant ATP synthase F0; Region: YMF19; cl07975
192222000577	2 probable transmembrane helices predicted for Cj0103 by TMHMM2.0 at aa 5-22 and 27-49
192222000578	HMMPfam hit to PF00430, ATP synthase B/B' CF(0),score 0.00034
192222000579	Plant ATP synthase F0; Region: YMF19; cl07975
192222000580	HMMPfam hit to PF00213, ATP synthase delta (OSCP) subunit, score 1.1e-07
192222000581	F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281
192222000582	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; cl15275
192222000583	F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to...; Region: F1_ATPase_alpha; cd01132
192222000584	beta subunit interaction interface [polypeptide binding]; other site
192222000585	Walker A motif; other site
192222000586	ATP binding site [chemical binding]; other site
192222000587	Walker B motif; other site
192222000588	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
192222000589	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 7.9e-19
192222000590	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 3.4e-115
192222000591	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000592	PS00152 ATP synthase alpha and beta subunits signature
192222000593	HMMPfam hit to PF00306, ATP synthase alpha/beta chain, C termin, score 2.5e-36
192222000594	ATP synthase; Region: ATP-synt; cl00365
192222000595	F0F1 ATP synthase subunit gamma; Provisional; Region: PRK13422
192222000596	HMMPfam hit to PF00231, ATP synthase, score 2.8e-83
192222000597	F0F1 ATP synthase subunit beta; Validated; Region: PRK09280
192222000598	ATP synthase alpha/beta family, beta-barrel domain; Region: ATP-synt_ab_N; cl15275
192222000599	F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a...; Region: F1-ATPase_beta; cd01133
192222000600	alpha subunit interaction interface [polypeptide binding]; other site
192222000601	Walker A motif; other site
192222000602	ATP binding site [chemical binding]; other site
192222000603	Walker B motif; other site
192222000604	inhibitor binding site; inhibition site
192222000605	ATP synthase alpha/beta chain, C terminal domain; Region: ATP-synt_ab_C; pfam00306
192222000606	HMMPfam hit to PF02874, ATP synthase alpha/beta family, beta-ba, score 4.3e-21
192222000607	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleot, score 1e-94
192222000608	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000609	PS00152 ATP synthase alpha and beta subunits signature
192222000610	HMMPfam hit to PF00306, ATP synthase alpha/beta chain, C termin, score 7.2e-55
192222000611	ATP synthase, F1 epsilon subunit (delta in mitochondria); Region: ATP_synt_epsi; TIGR01216
192222000612	ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Region: ATP-synt_DE_N; cl10033
192222000613	HMMPfam hit to PF02823, ATP synthase, Delta/Epsilon chain, beta, score 2.6e-21
192222000614	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
192222000615	3 probable transmembrane helices predicted for Cj0109 by TMHMM2.0 at aa 15-37, 96-118 and 138-160
192222000616	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 1e-24
192222000617	Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537
192222000618	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 7.2e-16
192222000619	1 probable transmembrane helix predicted for Cj0110 by TMHMM2.0 at aa 10-32
192222000620	Gram-negative bacterial tonB protein; Region: TonB; cl10048
192222000621	1 probable transmembrane helix predicted for Cj0111 by TMHMM2.0 at aa 9-31
192222000622	translocation protein TolB; Provisional; Region: tolB; PRK04043
192222000623	HMMPfam hit to PF04052, TolB amino-terminal domain,score 4e-51
192222000624	PS00284 Serpins signature
192222000625	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
192222000626	ligand binding site [chemical binding]; other site
192222000627	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000628	HMMPfam hit to PF00691, OmpA family, score 2.1e-27
192222000629	tol-pal system protein YbgF; Region: tol_pal_ybgF; TIGR02795
192222000630	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.012
192222000631	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587
192222000632	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000633	Acyl transferase domain; Region: Acyl_transf_1; cl08282
192222000634	malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128
192222000635	HMMPfam hit to PF00698, Acyl transferase domain,score 6.7e-07
192222000636	Phosphorylase superfamily; Region: PNP_UDP_1; cl00303
192222000637	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional; Region: PRK07164
192222000638	HMMPfam hit to PF01048, Phosphorylase family, score 1.9e-56
192222000639	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_II; cd01993
192222000640	Ligand Binding Site [chemical binding]; other site
192222000641	HMMPfam hit to PF01171, PP-loop family, score 4e-14
192222000642	Isochorismatase family; Region: Isochorismatase; pfam00857
192222000643	Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cd00431
192222000644	catalytic triad [active]
192222000645	conserved cis-peptide bond; other site
192222000646	Recombination protein O N terminal; Region: RecO_N; cl15812
192222000647	Uncharacterized protein family UPF0054; Region: UPF0054; cl00402
192222000648	HMMPfam hit to PF02130, Uncharacterized protein family UPF0054, score 6.5e-36
192222000649	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]; Region: COG0042
192222000650	Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also...; Region: DUS_like_FMN; cd02801
192222000651	FMN binding site [chemical binding]; other site
192222000652	active site
192222000653	catalytic residues [active]
192222000654	substrate binding site [chemical binding]; other site
192222000655	HMMPfam hit to PF01207, Dihydrouridine synthase (Dus), score 3.1e-75
192222000656	Prokaryotic dksA/traR C4-type zinc finger; Region: zf-dskA_traR; cl00755
192222000657	HMMPfam hit to PF01258, Prokaryotic dksA/traR C4-type zinc finge, score 6.8e-09
192222000658	PS01102 Prokaryotic dksA/traR C4-type zinc finger
192222000659	Uncharacterized conserved protein [Function unknown]; Region: COG1576; cl00679
192222000660	Predicted SPOUT methyltransferase; Region: SPOUT_MTase; pfam02590
192222000661	HMMPfam hit to PF02590, Uncharacterized ACR,COG1576, score 9.2e-69
192222000662	acetyl-CoA carboxylase subunit beta; Validated; Region: PRK05654
192222000663	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl15772
192222000664	PS00190 Cytochrome c family heme-binding site signature
192222000665	Putative fructose-1,6-bisphosphatase or related enzymes of inositol monophosphatase family. These are Mg++ dependent phosphatases. Members in this family may have fructose-1,6-bisphosphatase and/or inositol-monophosphatase activity. Fructose-1; Region: Arch_FBPase_2; cd01642
192222000666	putative active site [active]
192222000667	HMMPfam hit to PF00459, Inositol monophosphatase family, score 1.2e-06
192222000668	1 probable transmembrane helix predicted for Cj0128c by TMHMM2.0 at aa 172-194
192222000669	outer membrane protein assembly complex, YaeT protein; Region: OM_YaeT; TIGR03303
192222000670	Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520
192222000671	Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520
192222000672	Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520
192222000673	Surface antigen; Region: Bac_surface_Ag; cl03097
192222000674	HMMPfam hit to PF01103, Surface antigen, score 3e-78
192222000675	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 5.9e-08
192222000676	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 3e-07
192222000677	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 1.7e-07
192222000678	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 1.3e-07
192222000679	HMMPfam hit to PF07244, Surface antigen variable number repeat, score 3.7e-07
192222000680	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000681	Prephenate dehydrogenase [Amino acid transport and metabolism]; Region: TyrA; COG0287
192222000682	HMMPfam hit to PF02153, Prephenate dehydrogenase,score 1.2e-83
192222000683	Peptidase family M23; Region: Peptidase_M23; pfam01551
192222000684	1 probable transmembrane helix predicted for Cj0131 by TMHMM2.0 at aa 9-31
192222000685	HMMPfam hit to PF01551, Peptidase family M23, score 5.2e-27
192222000686	UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]; Region: LpxC; cl00512
192222000687	UDP-3-O-acyl N-acetylglycosamine deacetylase; Region: LpxC; pfam03331
192222000688	HMMPfam hit to PF03331, UDP-3-O-acyl N-acetylglycosamine deacetylase, score 5.5e-135
192222000689	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl14000
192222000690	HMMPfam hit to PF00814, Glycoprotease family, score 1e-18
192222000691	homoserine kinase; Provisional; Region: PRK01212
192222000692	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
192222000693	HMMPfam hit to PF00288, GHMP kinases  ATP-binding protei, score 6e-28
192222000694	PS00627 GHMP kinases  ATP-binding domain
192222000695	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000696	Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation; Region: YlxR; cl00189
192222000697	HMMPfam hit to PF04296, Protein of unknown function (DUF448), score 5.8e-31
192222000698	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
192222000699	translation initiation factor IF-2; Region: IF-2; TIGR00487
192222000700	Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760
192222000701	Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; Region: IF2_eIF5B; cd01887
192222000702	G1 box; other site
192222000703	putative GEF interaction site [polypeptide binding]; other site
192222000704	GTP/Mg2+ binding site [chemical binding]; other site
192222000705	Switch I region; other site
192222000706	G2 box; other site
192222000707	G3 box; other site
192222000708	Switch II region; other site
192222000709	G4 box; other site
192222000710	G5 box; other site
192222000711	This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell; Region: IF2_mtIF2_II; cd03702
192222000712	Translation-initiation factor 2; Region: IF-2; pfam11987
192222000713	mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor...; Region: mtIF2_IVc; cd03692
192222000714	HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 8.4e-15
192222000715	HMMPfam hit to PF04760, Translation initiation factor IF-2, N-ter, score 1.2e-20
192222000716	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 2.5e-54
192222000717	HMMPfam hit to PF01926, GTPase of unknown function,score 8.6e-10
192222000718	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000719	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.3e-08
192222000720	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.4e-08
192222000721	PS01176 Initiation factor 2 signature
192222000722	Ribosome-binding factor A; Region: RBFA; cl00542
192222000723	Uncharacterized BCR, YhbC family COG0779; Region: DUF150; pfam02576
192222000724	The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation.  Members of...; Region: Sm_like; cl00259
192222000725	The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation.  Members of...; Region: Sm_like; cl00259
192222000726	Sm1 motif; other site
192222000727	D1 - D2 interaction site; other site
192222000728	D3 - B interaction site; other site
192222000729	Hfq - Hfq interaction site; other site
192222000730	RNA binding pocket [nucleotide binding]; other site
192222000731	Sm2 motif; other site
192222000732	HMMPfam hit to PF02576, Uncharacterised BCR, YhbC family COG0779, score 1e-62
192222000733	GTPase subunit of restriction endonuclease [Defense mechanisms]; Region: McrB; COG1401
192222000734	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222000735	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000736	McrBC 5-methylcytosine restriction system component; Region: McrBC; cl01737
192222000737	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
192222000738	dimer interface [polypeptide binding]; other site
192222000739	putative PBP binding regions; other site
192222000740	ABC-ATPase subunit  interface; other site
192222000741	HMMPfam hit to PF00950, ABC 3 transport family,score 7.6e-82
192222000742	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000743	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000744	ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]; Region: ZnuC; COG1121
192222000745	ABC component of the metal-type transporters.  This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc.  The ATPases of this group of transporters are very similar to members of...; Region: ABC_Metallic_Cations; cd03235
192222000746	HMMPfam hit to PF00005, ABC transporter, score 7.4e-49
192222000747	PS00211 ABC transporters family signature
192222000748	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000749	Metal binding protein ZntC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: ZntC; cd01018
192222000750	Periplasmic solute binding protein family; Region: SBP_bac_9; pfam01297
192222000751	putative metal binding residues [ion binding]; other site
192222000752	HMMPfam hit to PF01297, Periplasmic solute binding protein family, score 6.1e-62
192222000753	Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]; Region: COG4191
192222000754	Cache domain; Region: Cache_1; pfam02743
192222000755	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
192222000756	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222000757	dimer interface [polypeptide binding]; other site
192222000758	putative CheW interface [polypeptide binding]; other site
192222000759	2 probable transmembrane helices predicted for Cj0144 by TMHMM2.0 at aa 10-32 and 287-309
192222000760	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 6.4e-21
192222000761	Predicted phosphatase [General function prediction only]; Region: PhoX; COG3211
192222000762	HMMPfam hit to PF05787, Bacterial protein of unknown function (DUF83, score 0
192222000763	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000764	thioredoxin-disulfide reductase; Region: TRX_reduct; TIGR01292
192222000765	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
192222000766	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreducta, score 6e-58
192222000767	PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site
192222000768	TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox...; Region: TRX_family; cd02947
192222000769	catalytic residues [active]
192222000770	HMMPfam hit to PF00085, Thioredoxin, score 6.9e-39
192222000771	PS00194 Thioredoxin family active site
192222000772	Restriction endonuclease; Region: Mrr_cat; cl00516
192222000773	HMMPfam hit to PF02021, Uncharacterised protein family UPF0102, score 6e-16
192222000774	homoserine dehydrogenase; Provisional; Region: PRK06349
192222000775	Homoserine dehydrogenase; Region: Homoserine_dh; pfam00742
192222000776	ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains; Region: ACT_HSDH-Hom; cd04881
192222000777	HMMPfam hit to PF01842, ACT domain, score 2e-10
192222000778	HMMPfam hit to PF00742, Homoserine dehydrogenase,score 2.7e-73
192222000779	PS01042 Homoserine dehydrogenase signature
192222000780	HMMPfam hit to PF03447, Homoserine dehydrogenase,NAD binding d, score 3.1e-13
192222000781	aminotransferase; Validated; Region: PRK08175
192222000782	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
192222000783	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222000784	homodimer interface [polypeptide binding]; other site
192222000785	catalytic residue [active]
192222000786	HMMPfam hit to PF00155, Aminotransferase class I and II, score 1.3e-29
192222000787	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl15761
192222000788	1 probable transmembrane helix predicted for Cj0152c by TMHMM2.0 at aa 94-116
192222000789	rRNA methylase, putative, group 3; Region: rRNA_methyl_3; TIGR00186
192222000790	RNA 2'-O ribose methyltransferase substrate binding; Region: SpoU_sub_bind; cl06870
192222000791	SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362
192222000792	HMMPfam hit to PF00588, SpoU rRNA Methylase family,score 7e-28
192222000793	Predicted methyltransferases [General function prediction only]; Region: COG0313
192222000794	Precorrin-3B methylase [Coenzyme metabolism]; Region: CobJ; cl00304
192222000795	HMMPfam hit to PF00590, Tetrapyrrole (Corrin/Porphyrin) Methylas, score 9.6e-20
192222000796	PS01296 Uncharacterized protein family UPF0011 signature
192222000797	Ribosomal protein L31; Region: Ribosomal_L31; cl00377
192222000798	HMMPfam hit to PF01197, Ribosomal protein L31,score 4.2e-40
192222000799	PS01143 Ribosomal protein L31 signature
192222000800	PS00190 Cytochrome c family heme-binding site signature
192222000801	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG1385; cl00611
192222000802	HMMPfam hit to PF04452, Protein of unknown function (DUF558), score 1.2e-28
192222000803	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000804	Cytochrome c; Region: Cytochrom_C; cl11414
192222000805	HMMPfam hit to PF00034, Cytochrome c, score 0.041
192222000806	PS00190 Cytochrome c family heme-binding site signature
192222000807	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000808	Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1),  6-pyrovoyl...; Region: TFold; cl00263
192222000809	Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]; Region: NrdG; COG0602
192222000810	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222000811	FeS/SAM binding site; other site
192222000812	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.1e-08
192222000813	molybdenum cofactor biosynthesis protein A; Reviewed; Region: moaA; PRK00164
192222000814	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222000815	FeS/SAM binding site; other site
192222000816	Molybdenum Cofactor Synthesis C; Region: Mob_synth_C; pfam06463
192222000817	HMMPfam hit to PF06463, Molybdenum Cofactor Synthesis C, score 1.5e-47
192222000818	HMMPfam hit to PF04055, Radical SAM superfamily,score 5.8e-38
192222000819	PS01305 moaA / nifB / pqqE family signature
192222000820	1 probable transmembrane helix predicted for Cj0162c by TMHMM2.0 at aa 5-24
192222000821	UbiA prenyltransferase family; Region: UbiA; cl00337
192222000822	HMMPfam hit to PF01040, UbiA prenyltransferase family, score 3.1e-52
192222000823	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000824	tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324
192222000825	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222000826	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000827	HMMPfam hit to PF01715, IPP transferase, score 5.9e-46
192222000828	Predicted membrane protein [Function unknown]; Region: COG1971
192222000829	Domain of unknown function DUF; Region: DUF204; pfam02659
192222000830	HMMPfam hit to PF02659, Domain of unknown function DUF, score 1.5e-17
192222000831	HMMPfam hit to PF02659, Domain of unknown function DUF, score 4.5e-15
192222000832	1 probable transmembrane helix predicted for Cj0168c by TMHMM2.0 at aa 4-21
192222000833	superoxide dismutase; Provisional; Region: PRK10543
192222000834	Iron/manganese superoxide dismutases, alpha-hairpin domain; Region: Sod_Fe_N; pfam00081
192222000835	Iron/manganese superoxide dismutases, C-terminal domain; Region: Sod_Fe_C; pfam02777
192222000836	HMMPfam hit to PF00081, Iron/manganese superoxide dismutases, alpha-, score 2.8e-30
192222000837	HMMPfam hit to PF02777, Iron/manganese superoxide dismutases, C-term, score 3.3e-45
192222000838	PS00088 Manganese and iron superoxide dismutases signature
192222000839	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000840	Protein of unknown function (DUF3500); Region: DUF3500; pfam12006
192222000841	Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]; Region: LYS9; COG1748
192222000842	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000843	NAD(P) binding pocket [chemical binding]; other site
192222000844	HMMPfam hit to PF03435, Saccharopine dehydrogenase,score 2e-236
192222000845	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
192222000846	ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family...; Region: ABC_Carb_Solutes_like; cd03259
192222000847	Walker A/P-loop; other site
192222000848	ATP binding site [chemical binding]; other site
192222000849	Q-loop/lid; other site
192222000850	ABC transporter signature motif; other site
192222000851	Walker B; other site
192222000852	D-loop; other site
192222000853	H-loop/switch region; other site
192222000854	HMMPfam hit to PF00005, ABC transporter, score 2.3e-45
192222000855	PS00211 ABC transporters family signature
192222000856	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000857	ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ThiP; COG1178
192222000858	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
192222000859	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222000860	dimer interface [polypeptide binding]; other site
192222000861	conserved gate region; other site
192222000862	putative PBP binding loops; other site
192222000863	ABC-ATPase subunit interface; other site
192222000864	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 5.4e-07
192222000865	ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]; Region: TbpA; COG4143
192222000866	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222000867	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 4.7e-14
192222000868	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000869	Protein of unknown function, DUF399; Region: DUF399; cl01139
192222000870	HMMPfam hit to PF04187, Protein of unknown function, DUF399, score 5e-164
192222000871	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000872	TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein; Region: TonB-hemlactrns; TIGR01786
192222000873	Porin superfamily.  These outer membrane channels share a beta-barrel structure that differ in strand and shear number.  Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl00284
192222000874	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 9.2e-13
192222000875	HMMPfam hit to PF00593, TonB dependent receptor,score 1.5e-22
192222000876	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
192222000877	3 probable transmembrane helices predicted for Cj0179 by TMHMM2.0 at aa 57-74, 155-177 and 197-219
192222000878	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 8.6e-47
192222000879	Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537
192222000880	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 8.4e-22
192222000881	1 probable transmembrane helix predicted for Cj0180 by TMHMM2.0 at aa 13-35
192222000882	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
192222000883	Gram-negative bacterial tonB protein; Region: TonB; cl10048
192222000884	1 probable transmembrane helix predicted for Cj0181 by TMHMM2.0 at aa 7-29
192222000885	ABC transporter transmembrane region; Region: ABC_membrane; cl00549
192222000886	6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35, 127-149, 197-219, 244-266,316-330 and 334-356
192222000887	Hemolysins and related proteins containing CBS domains [General function prediction only]; Region: TlyC; COG1253
192222000888	Domain of unknown function DUF21; Region: DUF21; pfam01595
192222000889	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in...; Region: CBS_pair_CorC_HlyC_assoc; cd04590
192222000890	Transporter associated domain; Region: CorC_HlyC; cl08393
192222000891	4 probable transmembrane helices predicted for Cj0183 by TMHMM2.0 at aa 20-42, 75-97, 117-139 and 162-184
192222000892	HMMPfam hit to PF01595, Domain of unknown function DUF21, score 3.2e-83
192222000893	HMMPfam hit to PF00571, CBS domain, score 2.5e-08
192222000894	HMMPfam hit to PF00571, CBS domain, score 6.5e-12
192222000895	HMMPfam hit to PF03471, Transporter associated domain, score 1.3e-22
192222000896	Predicted kinase [General function prediction only]; Region: COG4639
192222000897	phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain; Region: MPP_PPP_family; cd00144
192222000898	active site
192222000899	metal binding site [ion binding]; metal-binding site
192222000900	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 6.6e-12
192222000901	PhnA protein; Region: PhnA; pfam03831
192222000902	HMMPfam hit to PF03831, PhnA protein, score 3.1e-30
192222000903	Integral membrane protein TerC family; Region: TerC; cl10468
192222000904	HMMPfam hit to PF03741, Integral membrane protein TerC family, score 2.9e-96
192222000905	Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Region: FMT_core_GART; cd08645
192222000906	phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; Region: PurN; TIGR00639
192222000907	active site
192222000908	substrate binding site [chemical binding]; other site
192222000909	cosubstrate binding site; other site
192222000910	catalytic site [active]
192222000911	HMMPfam hit to PF00551, Formyl transferase, score 2.9e-50
192222000912	YjeF-related protein N-terminus; Region: YjeF_N; cl00318
192222000913	B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily; Region: YXKO-related; cd01171
192222000914	putative substrate binding site [chemical binding]; other site
192222000915	putative ATP binding site [chemical binding]; other site
192222000916	HMMPfam hit to PF01256, Carbohydrate kinase, score 4.5e-26
192222000917	PS01050 Uncharacterized protein family UPF0031 signature 2
192222000918	HMMPfam hit to PF03853, YjeF-related protein N-terminus, score 2.1e-54
192222000919	Uncharacterized conserved protein [Function unknown]; Region: COG1432
192222000920	Uncharacterized subfamily of N-terminal LabA-like domains; Region: LabA_like_N_1; cd11297
192222000921	putative metal binding site [ion binding]; other site
192222000922	C-terminal domain of LabA_like proteins; Region: LabA_like_C; cd10146
192222000923	HMMPfam hit to PF01936, Protein of unknown function DUF88, score 1.1e-05
192222000924	Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]; Region: COG0606
192222000925	Subunit ChlI of Mg-chelatase; Region: ChlI; cl12214
192222000926	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222000927	Magnesium chelatase, subunit ChlI; Region: Mg_chelatase_2; pfam13335
192222000928	HMMPfam hit to PF01078, Magnesium chelatase,subunit ChlI, score 9.4e-40
192222000929	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000930	Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes. These enzymes utilize Fe(II)...; Region: Pep_deformylase; cd00487
192222000931	active site
192222000932	catalytic residues [active]
192222000933	metal binding site [ion binding]; metal-binding site
192222000934	HMMPfam hit to PF01327, Polypeptide deformylase,score 4.7e-50
192222000935	Clp protease; Region: CLP_protease; pfam00574
192222000936	Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_2; cd07017
192222000937	oligomer interface [polypeptide binding]; other site
192222000938	active site residues [active]
192222000939	HMMPfam hit to PF00574, Clp protease, score 4e-136
192222000940	PS00382 Endopeptidase Clp histidine active site
192222000941	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000942	PS00381 Endopeptidase Clp serine active site
192222000943	trigger factor; Provisional; Region: tig; PRK01490
192222000944	FKBP-type peptidyl-prolyl cis-trans isomerase; Region: FKBP_C; cl11587
192222000945	Bacterial trigger factor protein (TF) C-terminus; Region: Trigger_C; pfam05698
192222000946	HMMPfam hit to PF05698, Bacterial trigger factor protein (TF) C-ter, score 2e-42
192222000947	HMMPfam hit to PF00254, FKBP-type peptidyl-prolyl cis-trans isomera, score 1.2e-27
192222000948	HMMPfam hit to PF05697, Bacterial trigger factor protein (TF), score 1.3e-44
192222000949	GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate.  The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria.  In...; Region: GTP_cyclohydro1; cd00642
192222000950	homodecamer interface [polypeptide binding]; other site
192222000951	GTP cyclohydrolase I; Provisional; Region: PLN03044
192222000952	active site
192222000953	putative catalytic site residues [active]
192222000954	zinc binding site [ion binding]; other site
192222000955	GTP-CH-I/GFRP interaction surface; other site
192222000956	HMMPfam hit to PF01227, GTP cyclohydrolase I, score 9.9e-56
192222000957	PS00859 GTP cyclohydrolase I signature 1
192222000958	flagellum-specific ATP synthase; Validated; Region: fliI; PRK08472
192222000959	Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they...; Region: ATPase_flagellum-secretory_path_III; cd01136
192222000960	Walker A motif/ATP binding site; other site
192222000961	Walker B motif; other site
192222000962	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleotid, score 4.1e-104
192222000963	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000964	PS00152 ATP synthase alpha and beta subunits signature
192222000965	amidophosphoribosyltransferase; Provisional; Region: PRK08525
192222000966	Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of  glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the...; Region: GPATase_N; cd00715
192222000967	active site
192222000968	tetramer interface [polypeptide binding]; other site
192222000969	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222000970	active site
192222000971	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.2e-12
192222000972	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222000973	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 2.8e-27
192222000974	dihydrodipicolinate reductase; Provisional; Region: PRK00048
192222000975	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222000976	Dihydrodipicolinate reductase, C-terminus; Region: DapB_C; pfam05173
192222000977	HMMPfam hit to PF05173, Dihydrodipicolinate reductase, C-terminus, score 1e-75
192222000978	PS01298 Dihydrodipicolinate reductase signature
192222000979	HMMPfam hit to PF01113, Dihydrodipicolinate reductase, N-terminus, score 1.7e-38
192222000980	recombination factor protein RarA; Reviewed; Region: PRK13342
192222000981	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222000982	Walker A motif; other site
192222000983	ATP binding site [chemical binding]; other site
192222000984	Walker B motif; other site
192222000985	arginine finger; other site
192222000986	MgsA AAA+ ATPase C terminal; Region: MgsA_C; pfam12002
192222000987	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 6.5e-07
192222000988	PS00017 ATP/GTP-binding site motif A (P-loop)
192222000989	1 probable transmembrane helix predicted for Cj0199c by TMHMM2.0 at aa 5-24
192222000990	Orthopoxvirus protein of unknown function (DUF830); Region: DUF830; cl13998
192222000991	PS00216 Sugar transport proteins signature 1
192222000992	1 probable transmembrane helix predicted for Cj0201c by TMHMM2.0 at aa 7-26
192222000993	Lumazine-binding domain; Region: Lumazine_bd; pfam12870
192222000994	C4-dicarboxylate anaerobic carrier; Region: DcuC; cl15356
192222000995	12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21, 28-45, 50-72, 84-106,126-148, 161-180, 195-217, 249-282, 302-321, 341-363,373-395 and 428-447
192222000996	HMMPfam hit to PF03600, Citrate transporter, score 7.1e-122
192222000997	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000998	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222000999	OPT oligopeptide transporter protein; Region: OPT; cl14607
192222001000	oligopeptide transporters, OPT superfamily; Region: OPT_sfam; TIGR00728
192222001001	HMMPfam hit to PF03169, OPT oligopeptide transporter protein, score 1.1e-95
192222001002	16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35, 39-61, 73-95, 99-121,162-184, 188-210, 212-234, 314-333, 345-367, 377-399,406-428, 450-472, 508-530, 545-567, 598-620 and 635-657
192222001003	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001004	Bacitracin resistance protein BacA; Region: BacA; cl00858
192222001005	HMMPfam hit to PF02673, Bacitracin resistance protein BacA, score 3.2e-133
192222001006	7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29, 44-66, 71-90, 100-119,172-194, 209-231 and 236-258
192222001007	threonyl-tRNA synthetase; Reviewed; Region: thrS; PRK12305
192222001008	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469
192222001009	Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: ThrRS_core; cd00771
192222001010	active site
192222001011	dimer interface [polypeptide binding]; other site
192222001012	motif 1; other site
192222001013	motif 2; other site
192222001014	motif 3; other site
192222001015	ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: ThrRS_anticodon; cd00860
192222001016	anticodon binding site; other site
192222001017	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 1e-48
192222001018	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222001019	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222001020	HMMPfam hit to PF03129, Anticodon binding domain,score 2.9e-26
192222001021	translation initiation factor IF-3; Reviewed; Region: infC; PRK00028
192222001022	Translation initiation factor IF-3, N-terminal domain; Region: IF3_N; pfam05198
192222001023	Translation initiation factor IF-3, C-terminal domain; Region: IF3_C; pfam00707
192222001024	HMMPfam hit to PF05198, Translation initiation factor IF-3, N-termin, score 2.5e-47
192222001025	PS00938 Initiation factor 3 signature
192222001026	HMMPfam hit to PF00707, Translation initiation factor IF-3, C-termin, score 3.5e-31
192222001027	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001028	HMMPfam hit to PF02086, D12 class N6 adenine-specific DNA met, score 2.6e-08
192222001029	PS00092 N-6 Adenine-specific DNA methylases signature
192222001030	Original (2000) note: Cj0223, probable pseudogene,len: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72),TR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin, and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match; Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence),has been carried out yet. Thus,  added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity; PMID:10225873, PMID:10531204
192222001031	N-acetyl-gamma-glutamyl-phosphate reductase; Validated; Region: argC; PRK00436
192222001032	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001033	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; cl15856
192222001034	HMMPfam hit to PF01118, Semialdehyde dehydrogenase,NAD bindi, score 1.1e-35
192222001035	HMMPfam hit to PF02774, Semialdehyde dehydrogenase,dimerisat, score 2.1e-41
192222001036	putative acetyltransferase; Provisional; Region: PRK03624
192222001037	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
192222001038	Coenzyme A binding pocket [chemical binding]; other site
192222001039	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 4.1e-15
192222001040	AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the...; Region: AAK_NAGK-C; cd04250
192222001041	feedback inhibition sensing region; other site
192222001042	homohexameric interface [polypeptide binding]; other site
192222001043	nucleotide binding site [chemical binding]; other site
192222001044	N-acetyl-L-glutamate binding site [chemical binding]; other site
192222001045	HMMPfam hit to PF00696, Amino acid kinase family,score 3.1e-51
192222001046	acetylornithine aminotransferase; Provisional; Region: PRK02627
192222001047	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
192222001048	inhibitor-cofactor binding pocket; inhibition site
192222001049	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222001050	catalytic residue [active]
192222001051	HMMPfam hit to PF00202, Aminotransferase class-III,score 4.3e-133
192222001052	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001053	Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: Pcm; COG2518
192222001054	HMMPfam hit to PF01135,Protein-L-isoaspartate(D-aspartate) O-methyl, score 1e-51
192222001055	Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663
192222001056	Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon...; Region: LbH_gamma_CA_like; cd04645
192222001057	trimer interface [polypeptide binding]; other site
192222001058	putative metal binding site [ion binding]; other site
192222001059	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 7.6
192222001060	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.1e+02
192222001061	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0059
192222001062	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 21
192222001063	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 8.1
192222001064	putative nicotinate phosphoribosyltransferase; Region: NAPRTase_put; TIGR01513
192222001065	Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction...; Region: NAPRTase_A; cd01570
192222001066	active site
192222001067	HMMPfam hit to PF04095, Nicotinate phosphoribosyltransferase (NAPRTa, score 3.6e-11
192222001068	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001069	Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain; Region: RNRR2; cd01049
192222001070	dimer interface [polypeptide binding]; other site
192222001071	putative radical transfer pathway; other site
192222001072	diiron center [ion binding]; other site
192222001073	tyrosyl radical; other site
192222001074	HMMPfam hit to PF00268, Ribonucleotide reductase,small chain, score 1.8e-30
192222001075	RDD family; Region: RDD; cl00746
192222001076	HMMPfam hit to PF06271, RDD family, score 1e-13
192222001077	orotate phosphoribosyltransferase; Validated; Region: pyrE; PRK00455
192222001078	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222001079	active site
192222001080	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.3e-22
192222001081	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222001082	ribosome recycling factor; Reviewed; Region: frr; PRK00083
192222001083	Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation.  Thus ribosomes are 'recycled' and ready for another round of...; Region: RRF; cd00520
192222001084	hinge region; other site
192222001085	HMMPfam hit to PF01765, Ribosome recycling factor,score 4.9e-88
192222001086	Preprotein translocase SecG subunit; Region: SecG; cl09123
192222001087	HMMPfam hit to PF03840, Preprotein translocase SecG subunit, score 2.8e-24
192222001088	Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432
192222001089	HMMPfam hit to PF01027, Uncharacterised protein family UPF0005, score 2.5e-36
192222001090	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an...; Region: beta_CA_cladeB; cd00884
192222001091	active site clefts [active]
192222001092	zinc binding site [ion binding]; other site
192222001093	dimer interface [polypeptide binding]; other site
192222001094	HMMPfam hit to PF00484, Carbonic anhydrase, score 1.9e-45
192222001095	PS00704 Prokaryotic-type carbonic anhydrases signature 1
192222001096	PS00705 Prokaryotic-type carbonic anhydrases signature 2
192222001097	Mechanosensitive ion channel; Region: MS_channel; pfam00924
192222001098	6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260, 265-279, 300-322,332-354, 366-388 and 392-411
192222001099	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 2e-68
192222001100	Fe-S cluster assembly protein NifU; Region: NifU_proper; TIGR02000
192222001101	Iron-sulfur cluster scaffold-like proteins; Region: IscU_like; cd06664
192222001102	trimerization site [polypeptide binding]; other site
192222001103	active site
192222001104	BFD-like [2Fe-2S] binding domain; Region: Fer2_BFD; cl01093
192222001105	NifU-like domain; Region: NifU; cl00484
192222001106	HMMPfam hit to PF01106, NifU-like domain, score 2.1e-27
192222001107	HMMPfam hit to PF04324, BFD-like [2Fe-2S] binding domain, score 5.7e-15
192222001108	HMMPfam hit to PF01592, NifU-like N terminal domain, score 2.9e-64
192222001109	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222001110	cysteine desulfurase DndA; Region: DNA_S_dndA; TIGR03235
192222001111	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
192222001112	catalytic residue [active]
192222001113	HMMPfam hit to PF00266, Aminotransferase class-V,score 3.2e-105
192222001114	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001115	PS00132 Zinc carboxypeptidases, zinc-binding region 1 signature
192222001116	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site
192222001117	Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cl15774
192222001118	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0029
192222001119	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.0079
192222001120	Ribosomal protein L35; Region: Ribosomal_L35p; cl00392
192222001121	HMMPfam hit to PF01632, Ribosomal protein L35,score 4.9e-18
192222001122	Ribosomal protein L20; Region: Ribosomal_L20; cd07026
192222001123	23S rRNA binding site [nucleotide binding]; other site
192222001124	L21 binding site [polypeptide binding]; other site
192222001125	L13 binding site [polypeptide binding]; other site
192222001126	HMMPfam hit to PF00453, Ribosomal protein L20,score 4.5e-51
192222001127	PS00937 Ribosomal protein L20 signature
192222001128	FIST C domain; Region: FIST_C; pfam10442
192222001129	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222001130	dimer interface [polypeptide binding]; other site
192222001131	putative CheW interface [polypeptide binding]; other site
192222001132	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 4.2e-09
192222001133	FIST N domain; Region: FIST; cl10701
192222001134	Predicted signal transduction protein [Signal transduction mechanisms]; Region: COG1639
192222001135	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222001136	metabolite-proton symporter; Region: 2A0106; TIGR00883
192222001137	putative substrate translocation pore; other site
192222001138	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4.5e-24
192222001139	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.4e-20
192222001140	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001141	MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine...; Region: MoaC_PE; cd01420
192222001142	trimer interface [polypeptide binding]; other site
192222001143	dimer interface [polypeptide binding]; other site
192222001144	putative active site [active]
192222001145	HMMPfam hit to PF01967, MoaC family, score 6.3e-78
192222001146	Protein of unknown function (DUF493); Region: DUF493; cl01102
192222001147	Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; Region: EEP; cl00490
192222001148	putative catalytic site [active]
192222001149	putative metal binding site [ion binding]; other site
192222001150	putative phosphate binding site [ion binding]; other site
192222001151	HMMPfam hit to PF03372,Endonuclease/Exonuclease/phosphatase fa, score 5.2e-47
192222001152	Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]; Region: COG2194
192222001153	Domain of unknown function (DUF1705); Region: DUF1705; pfam08019
192222001154	Sulfatase; Region: Sulfatase; cl10460
192222001155	5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27, 37-59, 66-88, 108-127 and 148-170
192222001156	HMMPfam hit to PF00884, Sulfatase, score 1.3e-98
192222001157	Prokaryotic diacylglycerol kinase; Region: DAGK_prokar; cl00526
192222001158	HMMPfam hit to PF01219, Prokaryotic diacylglycerol kinase, score 3.3e-32
192222001159	3 probable transmembrane helices predicted for Cj0257 by TMHMM2.0 at aa 26-45, 52-74 and 94-116
192222001160	PS01069 Prokaryotic diacylglycerol kinase signature
192222001161	Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is...; Region: DHOase; cd01294
192222001162	active site
192222001163	substrate binding pocket [chemical binding]; other site
192222001164	dimer interface [polypeptide binding]; other site
192222001165	HMMPfam hit to PF01979, Amidohydrolase family,score 1.7e-60
192222001166	PS00482 Dihydroorotase signature 1
192222001167	PS00483 Dihydroorotase signature 2
192222001168	Bestrophin, RFP-TM, chloride channel; Region: Bestrophin; cl01544
192222001169	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
192222001170	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222001171	S-adenosylmethionine binding site [chemical binding]; other site
192222001172	Cache domain; Region: Cache_1; pfam02743
192222001173	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
192222001174	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222001175	dimer interface [polypeptide binding]; other site
192222001176	putative CheW interface [polypeptide binding]; other site
192222001177	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 6.4e-21
192222001178	HMMPfam hit to PF00672, HAMP domain, score 0.0012
192222001179	HMMPfam hit to PF02743, Cache domain, score 0.00011
192222001180	HMMPfam hit to PF05581, Vibrio chemotaxis protein N terminus, score 4.3e-68
192222001181	Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]; Region: COG0428; cl00437
192222001182	ZIP Zinc transporter; Region: Zip; pfam02535
192222001183	HMMPfam hit to PF02535, ZIP Zinc transporter, score 5.8e-38
192222001184	8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32, 39-60, 75-94, 148-170,174-196, 209-231, 237-259 and 271-290
192222001185	PS00107 Protein kinases ATP-binding region signature
192222001186	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_DMSOR-BSOR-TMAOR; cd02769
192222001187	molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509
192222001188	molybdopterin cofactor binding site [chemical binding]; other site
192222001189	substrate binding site [chemical binding]; other site
192222001190	The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR),  trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its...; Region: MopB_CT_DMSOR-BSOR-TMAOR; cd02793
192222001191	molybdopterin cofactor binding site; other site
192222001192	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 5.6e-41
192222001193	PS00932 Prokaryotic molybdopterin oxidoreductases signature 3
192222001194	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 3.2e-120
192222001195	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001196	Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit [Energy production and conversion]; Region: TorC; COG3005
192222001197	PS00190 Cytochrome c family heme-binding site signature
192222001198	Protein of unknown function (DUF2393); Region: DUF2393; pfam09624
192222001199	PS00430 TonB-dependent receptor proteins signature 1
192222001200	Protein of unknown function (DUF2393); Region: DUF2393; pfam09624
192222001201	Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330
192222001202	The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin.  Many of these band 7 domain-containing proteins are lipid raft-associated.  Individual proteins of this...; Region: Band_7; cl02525
192222001203	HMMPfam hit to PF01145, SPFH domain / Band, score 2.3e-37
192222001204	1 probable transmembrane helix predicted for Cj0268c by TMHMM2.0 at aa 44-66
192222001205	BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids  leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and...; Region: BCAT_beta_family; cd01557
192222001206	homodimer interface [polypeptide binding]; other site
192222001207	substrate-cofactor binding pocket; other site
192222001208	catalytic residue [active]
192222001209	HMMPfam hit to PF01063, Aminotransferase class IV,score 6.2e-88
192222001210	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cl00235
192222001211	active site 1 [active]
192222001212	dimer interface [polypeptide binding]; other site
192222001213	hexamer interface [polypeptide binding]; other site
192222001214	active site 2 [active]
192222001215	HMMPfam hit to PF01361, Tautomerase enzyme, score 1.4e-21
192222001216	Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing...; Region: PRX_BCP; cd03017
192222001217	catalytic triad [active]
192222001218	HMMPfam hit to PF00578, AhpC/TSA family, score 4e-41
192222001219	Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which  binds to Adenosine group; Region: Alpha_ANH_like; cd01986
192222001220	Ligand Binding Site [chemical binding]; other site
192222001221	HMMPfam hit to PF02677, Uncharacterized BCR,COG1636, score 2.6e-97
192222001222	FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid...; Region: FabZ; cd01288
192222001223	HMMPfam hit to PF03061, Thioesterase superfamily,score 2.4e-21
192222001224	UDP-N-acetylglucosamine acyltransferase; Provisional; Region: PRK05289
192222001225	UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic...; Region: LbH_UDP-GlcNAc_AT; cd03351
192222001226	active site
192222001227	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.78
192222001228	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.072
192222001229	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 1.3
192222001230	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.075
192222001231	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.011
192222001232	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 2.8
192222001233	PS00101 Hexapeptide-repeat containing-transferases signature
192222001234	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 50
192222001235	ATP-dependent protease ATP-binding subunit ClpX; Provisional; Region: clpX; PRK05342
192222001236	ClpX C4-type zinc finger; Region: zf-C4_ClpX; cl05964
192222001237	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222001238	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222001239	Walker A motif; other site
192222001240	ATP binding site [chemical binding]; other site
192222001241	Walker B motif; other site
192222001242	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; cl11083
192222001243	HMMPfam hit to PF06689, ClpX C4-type zinc finger,score 3.2e-14
192222001244	HMMPfam hit to PF07724, ATPase family associated with various cell, score 2.7e-77
192222001245	HMMPfam hit to PF00004, ATPase family associated with various cell, score 1.1e-26
192222001246	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001247	PS00676 Sigma-54 interaction domain ATP-binding region B signature
192222001248	rod shape-determining protein MreB; Provisional; Region: PRK13927
192222001249	Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one...; Region: ACTIN; cl11528
192222001250	ATP binding site [chemical binding]; other site
192222001251	gelsolin binding site; other site
192222001252	profilin binding site; other site
192222001253	HMMPfam hit to PF06723, MreB/Mbl protein, score 6.5e-229
192222001254	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001255	Cell shape-determining protein [Cell envelope biogenesis, outer membrane]; Region: MreC; COG1792
192222001256	rod shape-determining protein MreC; Region: MreC; pfam04085
192222001257	1 probable transmembrane helix predicted for Cj0277 by TMHMM2.0 at aa 5-24
192222001258	HMMPfam hit to PF04085, rod shape-determining protein MreC, score 2.4e-43
192222001259	carbamoyl phosphate synthase large subunit; Reviewed; Region: carB; PRK05294
192222001260	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
192222001261	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222001262	Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Region: CPSase_L_D3; pfam02787
192222001263	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
192222001264	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222001265	Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways...; Region: MGS_CPS_II; cd01424
192222001266	IMP binding site; other site
192222001267	dimer interface [polypeptide binding]; other site
192222001268	interdomain contacts; other site
192222001269	partial ornithine binding site; other site
192222001270	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.8e-45
192222001271	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001272	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 2.3e-112
192222001273	PS00866 Carbamoyl-phosphate synthase subdomain signature 1
192222001274	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
192222001275	HMMPfam hit to PF02787, Carbamoyl-phosphate synthetase large c, score 2.8e-46
192222001276	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 3.2e-19
192222001277	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 8e-25
192222001278	PS00866 Carbamoyl-phosphate synthase subdomain signature 1
192222001279	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
192222001280	HMMPfam hit to PF02142, MGS-like domain, score 2.5e-28
192222001281	Telomere recombination; Region: Sua5_yciO_yrdC; cl00305
192222001282	Transaldolase-like proteins from plants and bacteria; Region: Transaldolase_like; cd00955
192222001283	putative active site [active]
192222001284	transaldolase; Provisional; Region: PRK03903
192222001285	catalytic residue [active]
192222001286	HMMPfam hit to PF00923, Transaldolase, score 7e-34
192222001287	PS01054 Transaldolase signature 1
192222001288	phosphoserine phosphatase SerB; Region: serB; TIGR00338
192222001289	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222001290	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222001291	motif II; other site
192222001292	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 5.8e-18
192222001293	CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea. CheW interacts with the histidine kinase CheA, most likely with the related regulatory domain of CheA. CheW is proposed to form signalling arrays together...; Region: CheW; cd00732
192222001294	putative CheA interaction surface; other site
192222001295	HMMPfam hit to PF01584, CheW-like domain, score 5.9e-30
192222001296	chemotaxis protein CheA; Provisional; Region: PRK10547
192222001297	Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is...; Region: HPT; cd00088
192222001298	putative binding surface; other site
192222001299	active site
192222001300	Signal transducing histidine kinase, homodimeric domain; Region: H-kinase_dim; pfam02895
192222001301	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222001302	ATP binding site [chemical binding]; other site
192222001303	Mg2+ binding site [ion binding]; other site
192222001304	G-X-G motif; other site
192222001305	CheA regulatory domain; CheA is a histidine protein kinase present in bacteria and archea. Activated by the chemotaxis receptor a histidine phosphoryl group from CheA is passed directly to an aspartate in the response regulator CheY. This signalling...; Region: CheA_reg; cd00731
192222001306	Response regulator receiver domain; Region: Response_reg; pfam00072
192222001307	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222001308	active site
192222001309	phosphorylation site [posttranslational modification]
192222001310	intermolecular recognition site; other site
192222001311	dimerization interface [polypeptide binding]; other site
192222001312	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.4e-25
192222001313	PS00217 Sugar transport proteins signature 2
192222001314	HMMPfam hit to PF01584, CheW-like domain, score 1.8e-28
192222001315	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HS, score 3.2e-28
192222001316	HMMPfam hit to PF02895, Signal transducing histidine kinase, hom, score 3.7e-24
192222001317	HMMPfam hit to PF01627, Hpt domain, score 5.4e-17
192222001318	CheW-like domain. CheW proteins are part of the chemotaxis signalling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and...; Region: CheW_like; cl00256
192222001319	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
192222001320	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222001321	active site
192222001322	phosphorylation site [posttranslational modification]
192222001323	intermolecular recognition site; other site
192222001324	dimerization interface [polypeptide binding]; other site
192222001325	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.1e-15
192222001326	HMMPfam hit to PF01584, CheW-like domain, score 1.6e-28
192222001327	metallophosphatase superfamily, metallophosphatase domain; Region: MPP_superfamily; cl13995
192222001328	active site
192222001329	metal binding site [ion binding]; metal-binding site
192222001330	transcription elongation factor GreA; Reviewed; Region: greA; PRK00226
192222001331	Transcription elongation factor, N-terminal; Region: GreA_GreB_N; pfam03449
192222001332	Transcription elongation factor, GreA/GreB, C-term; Region: GreA_GreB; pfam01272
192222001333	HMMPfam hit to PF01272, Prokaryotic transcription elongation fact, score 3.2e-27
192222001334	PS00830 Prokaryotic transcription elongation factors signature 2
192222001335	HMMPfam hit to PF03449, Prokaryotic transcription elongation fact, score 1.4e-37
192222001336	PS00829 Prokaryotic transcription elongation factors signature 1
192222001337	Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]; Region: LpxB; COG0763
192222001338	ipid-A-disaccharide synthase; Provisional; Region: PRK14089
192222001339	HMMPfam hit to PF02684, Lipid-A-disaccharide synthetase, score 4.7e-81
192222001340	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222001341	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
192222001342	Original (2000) note: Cj0290c, probable pseudogene representing the C-terminus of Cj0291c (glpT'); Original (2000) note: Cj0292c, probable pseudogene representing the N-terminus of Cj0291c (glpT'); Original (2000) note: Cj0291c, glpT',glycerol-3-phosphate transporter, possible pseudogene,len: 319 aa; similar to the central region of many e.g. GLPT_ECOLI glycerol-3-phosphate transporter (452 aa),fasta scores; opt: 473 z-score: 832.3 E(): 0, 35.3% identity in 323 aa overlap. No Hp match. Contains PS00942 glpT family of transporters signature. Note that the N-terminal 100 aa and the C-terminal 50 aa present in other glpT proteins are out of frame, and are represented by the CDSs Cj0292c and Cj0290c respectively. The sequence has been checked, and is believed to be correct; Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also,twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Carbohydrates, organic acids and alcohols
192222001343	Survival protein SurE; Region: SurE; cl00448
192222001344	HMMPfam hit to PF01975, Survival protein SurE,score 3.9e-78
192222001345	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]; Region: COG1179
192222001346	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001347	ATP binding site [chemical binding]; other site
192222001348	substrate interface [chemical binding]; other site
192222001349	HMMPfam hit to PF00899, ThiF family, score 1.3e-09
192222001350	1 probable transmembrane helix predicted for Cj0294 by TMHMM2.0 at aa 26-43
192222001351	N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357
192222001352	Acetyltransferase (GNAT) domain; Region: Acetyltransf_10; pfam13673
192222001353	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.2e-07
192222001354	Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production; Region: Asp_decarbox; cd06919
192222001355	tetramerization interface [polypeptide binding]; other site
192222001356	active site
192222001357	HMMPfam hit to PF02261, Aspartate decarboxylase,score 1.5e-61
192222001358	pantoate--beta-alanine ligase; Region: panC; TIGR00018
192222001359	Pantoate-beta-alanine ligase; Region: PanC; cd00560
192222001360	active site
192222001361	ATP-binding site [chemical binding]; other site
192222001362	pantoate-binding site; other site
192222001363	HXXH motif; other site
192222001364	HMMPfam hit to PF02569, Pantoate-beta-alanine ligase, score 4.1e-137
192222001365	Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a...; Region: KPHMT-like; cd06557
192222001366	active site
192222001367	oligomerization interface [polypeptide binding]; other site
192222001368	metal binding site [ion binding]; metal-binding site
192222001369	HMMPfam hit to PF02548, Ketopantoate hydroxymethyltransferase, score 8.3e-137
192222001370	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01009
192222001371	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 1.3e-33
192222001372	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222001373	ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]; Region: ThiQ; COG3840
192222001374	Walker A/P-loop; other site
192222001375	ATP binding site [chemical binding]; other site
192222001376	Q-loop/lid; other site
192222001377	ABC transporter signature motif; other site
192222001378	Walker B; other site
192222001379	D-loop; other site
192222001380	H-loop/switch region; other site
192222001381	HMMPfam hit to PF00005, ABC transporter, score 6e-62
192222001382	PS00211 ABC transporters family signature
192222001383	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001384	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222001385	dimer interface [polypeptide binding]; other site
192222001386	conserved gate region; other site
192222001387	putative PBP binding loops; other site
192222001388	ABC-ATPase subunit interface; other site
192222001389	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.6e-19
192222001390	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001391	TOBE domain; Region: TOBE_2; cl01440
192222001392	HMMPfam hit to PF03459, TOBE domain, score 4.6e-06
192222001393	ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: ModA; COG0725
192222001394	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222001395	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 4.2e-13
192222001396	1 probable transmembrane helix predicted for Cj0303c by TMHMM2.0 at aa 5-27
192222001397	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001398	biotin biosynthesis protein BioC; Region: BioC; TIGR02072
192222001399	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222001400	S-adenosylmethionine binding site [chemical binding]; other site
192222001401	Protein of unknown function (DUF452); Region: DUF452; cl01062
192222001402	HMMPfam hit to PF04301, Protein of unknown function (DUF452), score 2.5e-153
192222001403	7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]; Region: BioF; COG0156
192222001404	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222001405	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
192222001406	catalytic residue [active]
192222001407	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2e-07
192222001408	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site
192222001409	adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional; Region: PRK05964
192222001410	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
192222001411	inhibitor-cofactor binding pocket; inhibition site
192222001412	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222001413	catalytic residue [active]
192222001414	HMMPfam hit to PF00202, Aminotransferase class-III,score 4.3e-127
192222001415	PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site
192222001416	AAA domain; Region: AAA_26; pfam13500
192222001417	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222001418	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
192222001419	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 4.2e-30
192222001420	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
192222001421	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 1.3e-12
192222001422	50S ribosomal protein L25/general stress protein Ctc; Reviewed; Region: PRK05618
192222001423	Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain; Region: Ribosomal_L25_TL5_CTC; cd00495
192222001424	5S rRNA interface [nucleotide binding]; other site
192222001425	CTC domain interface [polypeptide binding]; other site
192222001426	L16 interface [polypeptide binding]; other site
192222001427	HMMPfam hit to PF01386, Ribosomal L25p family,score 1.5e-29
192222001428	Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome. This ensures the recycling of peptidyl-tRNAs into tRNAs produced through...; Region: PTH; cd00462
192222001429	putative active site [active]
192222001430	catalytic residue [active]
192222001431	HMMPfam hit to PF01195, Peptidyl-tRNA hydrolase,score 4.2e-68
192222001432	PS01195 Peptidyl-tRNA hydrolase signature 1
192222001433	PS01196 Peptidyl-tRNA hydrolase signature 2
192222001434	Predicted permeases [General function prediction only]; Region: COG0795; cl12074
192222001435	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
192222001436	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 5.8e-79
192222001437	6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34, 49-71, 95-117, 270-292,294-316 and 326-348
192222001438	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001439	diaminopimelate decarboxylase; Region: lysA; TIGR01048
192222001440	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase; Region: PLPDE_III_DapDC; cd06828
192222001441	active site
192222001442	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
192222001443	substrate binding site [chemical binding]; other site
192222001444	catalytic residues [active]
192222001445	dimer interface [polypeptide binding]; other site
192222001446	HMMPfam hit to PF02784, Pyridoxal-dependent decarboxylase, py, score 2e-76
192222001447	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 5.7e-33
192222001448	Haloacid Dehalogenase Superfamily Class (subfamily) IIA; Region: HAD-SF-IIA; TIGR01460
192222001449	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222001450	active site
192222001451	motif I; other site
192222001452	motif II; other site
192222001453	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222001454	Chorismate mutase type II; Region: CM_2; cl00693
192222001455	Prephenate dehydratase [Amino acid transport and metabolism]; Region: PheA; COG0077
192222001456	Prephenate dehydratase; Region: PDT; pfam00800
192222001457	C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme; Region: ACT_CM-PDT; cd04905
192222001458	putative L-Phe binding site [chemical binding]; other site
192222001459	HMMPfam hit to PF01817, Chorismate mutase type II,score 1.9e-22
192222001460	HMMPfam hit to PF00800, Prephenate dehydratase,score 6.3e-56
192222001461	PS00857 Prephenate dehydratase signature 1
192222001462	HMMPfam hit to PF01842, ACT domain, score 0.00089
192222001463	PS00858 Prephenate dehydratase signature 2
192222001464	histidinol-phosphate aminotransferase; Validated; Region: PRK02731
192222001465	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
192222001466	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222001467	homodimer interface [polypeptide binding]; other site
192222001468	catalytic residue [active]
192222001469	HMMPfam hit to PF00155, Aminotransferase class I and II, score 6.6e-16
192222001470	flagellar MS-ring protein; Reviewed; Region: fliF; PRK06007
192222001471	Secretory protein of YscJ/FliF family; Region: YscJ_FliF; cl01907
192222001472	Flagellar M-ring protein C-terminal; Region: YscJ_FliF_C; pfam08345
192222001473	HMMPfam hit to PF01514, Secretory protein of YscJ/FliF family, score 3.9e-54
192222001474	1 probable transmembrane helix predicted for Cj0318 by TMHMM2.0 at aa 23-42
192222001475	flagellar motor switch protein G; Validated; Region: fliG; PRK05686
192222001476	FliG C-terminal domain; Region: FliG_C; pfam01706
192222001477	HMMPfam hit to PF01706, FliG C-terminal domain,score 7.5e-48
192222001478	flagellar assembly protein H; Validated; Region: fliH; PRK06669
192222001479	Flagellar assembly protein FliH; Region: FliH; pfam02108
192222001480	1-deoxy-D-xylulose-5-phosphate synthase; Provisional; Region: PRK05444
192222001481	Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products...; Region: TPP_DXS; cd02007
192222001482	TPP-binding site; other site
192222001483	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
192222001484	PYR/PP interface [polypeptide binding]; other site
192222001485	dimer interface [polypeptide binding]; other site
192222001486	TPP binding site [chemical binding]; other site
192222001487	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
192222001488	PS00801 Transketolase signature 1
192222001489	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001490	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 2.1e-48
192222001491	PS00802 Transketolase signature 2
192222001492	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 6.3e-11
192222001493	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
192222001494	metal binding site 2 [ion binding]; metal-binding site
192222001495	putative DNA binding helix; other site
192222001496	metal binding site 1 [ion binding]; metal-binding site
192222001497	structural Zn2+ binding site [ion binding]; other site
192222001498	HMMPfam hit to PF01475, Ferric uptake regulator family, score 4.3e-22
192222001499	Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]; Region: UbiE; COG2226
192222001500	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222001501	S-adenosylmethionine binding site [chemical binding]; other site
192222001502	HMMPfam hit to PF01209, ubiE/COQ5 methyltransferase family, score 2.2e-28
192222001503	exodeoxyribonuclease VII large subunit; Reviewed; Region: xseA; PRK00286
192222001504	ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a...; Region: ExoVII_LU_OBF; cd04489
192222001505	generic binding surface II; other site
192222001506	generic binding surface I; other site
192222001507	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 6.9e-11
192222001508	HMMPfam hit to PF02601, Exonuclease VII, large subunit, score 1.1e-27
192222001509	Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT).  PSAT is active as...; Region: PSAT_like; cd00611
192222001510	homodimer interface [polypeptide binding]; other site
192222001511	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
192222001512	substrate-cofactor binding pocket; other site
192222001513	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222001514	catalytic residue [active]
192222001515	HMMPfam hit to PF00266, Aminotransferase class-V,score 3.6e-37
192222001516	This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function.  The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150
192222001517	homotrimer interaction site [polypeptide binding]; other site
192222001518	putative active site [active]
192222001519	HMMPfam hit to PF01042, Endoribonuclease L-PSP,score 3.8e-16
192222001520	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK09352
192222001521	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
192222001522	dimer interface [polypeptide binding]; other site
192222001523	active site
192222001524	CoA binding pocket [chemical binding]; other site
192222001525	Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390
192222001526	HMMPfam hit to PF02504, Fatty acid synthesis protein, score 1.6e-141
192222001527	Ribosomal L32p protein family; Region: Ribosomal_L32p; cl09115
192222001528	HMMPfam hit to PF01783, Ribosomal L32p protein family, score 1.8e-05
192222001529	Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside...; Region: NDPk_I; cd04413
192222001530	active site
192222001531	multimer interface [polypeptide binding]; other site
192222001532	HMMPfam hit to PF00334, Nucleoside diphosphate kinase, score 6e-80
192222001533	PS00469 Nucleoside diphosphate kinases active site
192222001534	4Fe-4S binding domain; Region: Fer4; cl02805
192222001535	benzoyl-CoA oxygenase/reductase, BoxA protein; Region: benzo_boxA; TIGR03224
192222001536	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 2.9e-06
192222001537	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222001538	peroxidase; Provisional; Region: PRK15000
192222001539	Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides; Region: PRX_Typ2cys; cd03015
192222001540	dimer interface [polypeptide binding]; other site
192222001541	decamer (pentamer of dimers) interface [polypeptide binding]; other site
192222001542	catalytic triad [active]
192222001543	peroxidatic and resolving cysteines [active]
192222001544	HMMPfam hit to PF00578, AhpC/TSA family, score 8.6e-60
192222001545	flagellar biosynthesis protein FlhB; Reviewed; Region: flhB; PRK05702
192222001546	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
192222001547	HMMPfam hit to PF01312, FlhB HrpN YscU SpaS Family,score 2.4e-119
192222001548	4 probable transmembrane helices predicted for Cj0335 by TMHMM2.0 at aa 32-54, 83-105, 141-163 and 188-210
192222001549	flagellar motor protein MotB; Reviewed; Region: motB; PRK08457
192222001550	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
192222001551	ligand binding site [chemical binding]; other site
192222001552	HMMPfam hit to PF00691, OmpA family, score 9.1e-07
192222001553	1 probable transmembrane helix predicted for Cj0336c by TMHMM2.0 at aa 16-38
192222001554	Flagellar motor component [Cell motility and secretion]; Region: MotA; COG1291
192222001555	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
192222001556	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 5.5e-09
192222001557	PS01307 Flagellar motor protein motA family signature
192222001558	DNA polymerase I; Provisional; Region: PRK05755
192222001559	PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: PIN_53EXO; cd09859
192222001560	active site
192222001561	metal binding site 1 [ion binding]; metal-binding site
192222001562	putative 5' ssDNA interaction site; other site
192222001563	metal binding site 3; metal-binding site
192222001564	metal binding site 2 [ion binding]; metal-binding site
192222001565	H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs; Region: H3TH_53EXO; cd09898
192222001566	putative DNA binding site [nucleotide binding]; other site
192222001567	putative metal binding site [ion binding]; other site
192222001568	DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases; Region: DNA_polA_I_Ecoli_like_exo; cd06139
192222001569	active site
192222001570	catalytic site [active]
192222001571	substrate binding site [chemical binding]; other site
192222001572	Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication; Region: DNA_pol_A_pol_I_C; cd08637
192222001573	active site
192222001574	DNA binding site [nucleotide binding]
192222001575	catalytic site [active]
192222001576	HMMPfam hit to PF00476, DNA polymerase family A,score 3.2e-110
192222001577	PS00447 DNA polymerase family A signature
192222001578	HMMPfam hit to PF01612, 3'-5' exonuclease, score 3e-25
192222001579	HMMPfam hit to PF01367, 5'-3' exonuclease,C-terminal SAM fold, score 4.4e-42
192222001580	HMMPfam hit to PF02739, 5'-3' exonuclease,N-terminal resolvase-, score 5.4e-48
192222001581	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001582	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222001583	metabolite-proton symporter; Region: 2A0106; TIGR00883
192222001584	putative substrate translocation pore; other site
192222001585	HMMPfam hit to PF00083, Sugar (and other) transporter, score 1.3e-35
192222001586	10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52, 62-84, 105-127, 164-186,198-220, 294-316, 323-342, 352-374, 394-413 and 417-439
192222001587	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.5e-24
192222001588	nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase.  This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in...; Region: nuc_hydro_CjNH; cd02654
192222001589	active site
192222001590	HMMPfam hit to PF01156, Inosine-uridine preferring nucleoside hy, score 5.1e-18
192222001591	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
192222001592	excinuclease ABC subunit A; Reviewed; Region: uvrA; PRK00349
192222001593	The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_I; cd03270
192222001594	The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_I; cd03270
192222001595	The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion.  Recognition and cleavage of the damaged DNA is a multistep...; Region: ABC_UvrA_II; cd03271
192222001596	HMMPfam hit to PF00005, ABC transporter, score 9.1e-19
192222001597	PS00211 ABC transporters family signature
192222001598	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001599	PS00211 ABC transporters family signature
192222001600	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001601	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
192222001602	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 2.6e-34
192222001603	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001604	chorismate binding enzyme; Region: Chorismate_bind; cl10555
192222001605	HMMPfam hit to PF00425, chorismate binding enzyme,score 1.1e-90
192222001606	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
192222001607	Glutamine amidotransferase class-I; Region: GATase; pfam00117
192222001608	glutamine binding [chemical binding]; other site
192222001609	catalytic triad [active]
192222001610	Glycosyl transferase family, helical bundle domain; Region: Glycos_trans_3N; pfam02885
192222001611	anthranilate phosphoribosyltransferase; Region: trpD; TIGR01245
192222001612	Glycosyl transferase family, a/b domain; Region: Glycos_transf_3; pfam00591
192222001613	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 5.4e-61
192222001614	PS00442 Glutamine amidotransferases class-I active site
192222001615	HMMPfam hit to PF00591, Glycosyl transferase family, a/b doma, score 2.5e-78
192222001616	Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric; Region: PRAI; cd00405
192222001617	active site
192222001618	HMMPfam hit to PF00697,N-(5'phosphoribosyl)anthranilate (PRA) isome, score 4.5e-31
192222001619	Tryptophan synthase-beta:  Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to...; Region: Trp-synth_B; cd06446
192222001620	Pyridoxal-phosphate dependent enzyme; Region: PALP; pfam00291
192222001621	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222001622	catalytic residue [active]
192222001623	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 1.8e-108
192222001624	PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site
192222001625	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001626	tryptophan synthase subunit alpha; Provisional; Region: trpA; PRK13111
192222001627	Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both...; Region: Tryptophan_synthase_alpha; cd04724
192222001628	substrate binding site [chemical binding]; other site
192222001629	active site
192222001630	catalytic residues [active]
192222001631	heterodimer interface [polypeptide binding]; other site
192222001632	HMMPfam hit to PF00290, Tryptophan synthase alpha chain, score 2.2e-73
192222001633	PS00167 Tryptophan synthase alpha chain signature
192222001634	Chemotaxis phosphatase CheX; Region: CheX; cl15816
192222001635	Surface presentation of antigens (SPOA); Region: SpoA; cl00819
192222001636	HMMPfam hit to PF01052, Surface presentation of antigens (SPOA) prot, score 9e-34
192222001637	2 probable transmembrane helices predicted for Cj0352 by TMHMM2.0 at aa 5-24 and 153-170
192222001638	Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]; Region: GppA; COG0248
192222001639	Ppx/GppA phosphatase family; Region: Ppx-GppA; cl15449
192222001640	HMMPfam hit to PF02541, Ppx/GppA phosphatase family, score 1.5e-46
192222001641	benzoyl-CoA oxygenase/reductase, BoxA protein; Region: benzo_boxA; TIGR03224
192222001642	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0069
192222001643	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222001644	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
192222001645	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222001646	active site
192222001647	phosphorylation site [posttranslational modification]
192222001648	intermolecular recognition site; other site
192222001649	dimerization interface [polypeptide binding]; other site
192222001650	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
192222001651	DNA binding site [nucleotide binding]
192222001652	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 4.2e-20
192222001653	HMMPfam hit to PF00072, Response regulator receiver domain, score 4e-19
192222001654	Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1),  6-pyrovoyl...; Region: TFold; cl00263
192222001655	Glycerol-3-phosphate acyltransferase; Region: G3P_acyltransf; cl00410
192222001656	PS00294 Prenyl group binding site (CAAX box)
192222001657	HMMPfam hit to PF02660, Domain of unknown function DUF, score 1.3e-44
192222001658	Cytochrome c peroxidase [Inorganic ion transport and metabolism]; Region: MauG; COG1858
192222001659	HMMPfam hit to PF03150, Di-haem cytochrome c peroxidase, score 1.4e-78
192222001660	PS00190 Cytochrome c family heme-binding site signature
192222001661	PS00190 Cytochrome c family heme-binding site signature
192222001662	phosphoglucosamine mutase; Provisional; Region: glmM; PRK14324
192222001663	GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of...; Region: GlmM; cd05802
192222001664	active site
192222001665	substrate binding site [chemical binding]; other site
192222001666	metal binding site [ion binding]; metal-binding site
192222001667	HMMPfam hit to PF02878,Phosphoglucomutase/phosphomannomutase, al, score 2.8e-60
192222001668	PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature
192222001669	HMMPfam hit to PF02879,Phosphoglucomutase/phosphomannomutase, al, score 2.6e-37
192222001670	HMMPfam hit to PF02880,Phosphoglucomutase/phosphomannomutase, al, score 2.5e-31
192222001671	HMMPfam hit to PF00408,Phosphoglucomutase/phosphomannomutase, C-, score 5.8e-06
192222001672	Signal peptidase (SPase) II; Region: Peptidase_A8; cl00458
192222001673	lipoprotein signal peptidase; Provisional; Region: PRK14787
192222001674	4 probable transmembrane helices predicted for Cj0361 by TMHMM2.0 at aa 7-24, 39-58, 65-84 and 120-142
192222001675	HMMPfam hit to PF01252, Signal peptidase (SPase) II, score 9.9e-41
192222001676	PS00855 Signal peptidases II signature
192222001677	Uncharacterized protein family (UPF0093); Region: UPF0093; cl00863
192222001678	HMMPfam hit to PF03653, Uncharacterised protein family (UPF0093), score 9e-53
192222001679	4 probable transmembrane helices predicted for Cj0362 by TMHMM2.0 at aa 15-36, 57-79, 83-105 and 126-148
192222001680	coproporphyrinogen III oxidase; Provisional; Region: PRK08629
192222001681	HMMPfam hit to PF06969, HemN C-terminal region,score 0.0012
192222001682	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.4e-21
192222001683	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
192222001684	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.6e-27
192222001685	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.2e-33
192222001686	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001687	The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Region: 2A0602; TIGR00915
192222001688	Protein export membrane protein; Region: SecD_SecF; cl14618
192222001689	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family,score 0
192222001690	RND family efflux transporter, MFP subunit; Region: RND_mfp; TIGR01730
192222001691	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222001692	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222001693	HMMPfam hit to PF00529, HlyD family secretion protein, score 2.9e-21
192222001694	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001695	Transcriptional regulator [Transcription]; Region: AcrR; COG1309
192222001696	Helix-turn-helix domains; Region: HTH; cl00088
192222001697	HMMPfam hit to PF00440, Bacterial regulatory proteins, tetR family, score 7.1e-10
192222001698	cytochrome c oxidase accessory protein FixG; Region: ccoG_rdxA_fixG; TIGR02745
192222001699	4Fe-4S binding domain; Region: Fer4_5; pfam12801
192222001700	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
192222001701	Ubp3 associated protein Bre5; Region: Bre5; pfam11614
192222001702	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0014
192222001703	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222001704	Ribosomal protein S21; Region: Ribosomal_S21; cl00529
192222001705	HMMPfam hit to PF01165, Ribosomal protein S21,score 1.1e-24
192222001706	hypothetical protein; Provisional; Region: PRK04081
192222001707	1 probable transmembrane helix predicted for Cj0371 by TMHMM2.0 at aa 7-29
192222001708	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001709	A circularly permuted ATPgrasp; Region: CP_ATPgrasp_1; cl00503
192222001710	HMMPfam hit to PF03738, Glutathionylspermidine synthase, score 3.6e-252
192222001711	2-hydroxyacid dehydrogenase; Provisional; Region: PRK08410
192222001712	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001713	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 3.7e-21
192222001714	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 1.4e-41
192222001715	PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3
192222001716	Protein of unknown function (DUF520); Region: DUF520; cl00723
192222001717	HMMPfam hit to PF04461, Protein of unknown function (DUF520), score 3.7e-100
192222001718	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001719	ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]; Region: SpoVK; COG0464
192222001720	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222001721	Walker A motif; other site
192222001722	ATP binding site [chemical binding]; other site
192222001723	Walker B motif; other site
192222001724	arginine finger; other site
192222001725	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.4e-36
192222001726	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001727	Ferric reductase like transmembrane component; Region: Ferric_reduct; cl01043
192222001728	HMMPfam hit to PF05252, Uncharacterised protein family (UPF0191), score 1.2e-08
192222001729	TMAO/DMSO reductase; Reviewed; Region: PRK05363
192222001730	YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY; Region: YedY_like_Moco; cd02107
192222001731	Moco binding site; other site
192222001732	metal coordination site [ion binding]; other site
192222001733	HMMPfam hit to PF00174, Oxidoreductase molybdopterin binding d, score 3.2e-05
192222001734	Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two...; Region: OMP_decarboxylase_like; cd04725
192222001735	active site
192222001736	dimer interface [polypeptide binding]; other site
192222001737	HMMPfam hit to PF00215, Orotidine 5'-phosphate decarboxylase / HUMP, score 7.3e-82
192222001738	PS00156 Orotidine 5'-phosphate decarboxylase active site
192222001739	Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus...; Region: Terminator_NusB; cd00619
192222001740	putative RNA binding site [nucleotide binding]; other site
192222001741	HMMPfam hit to PF01029, NusB family, score 1.9e-36
192222001742	lumazine synthase (6,7-dimethyl-8-ribityllumazine synthase, LS), catalyzes the penultimate step in the biosynthesis of riboflavin (vitamin B2); type-I; Region: Lumazine_synthase-I; cd09209
192222001743	homopentamer interface [polypeptide binding]; other site
192222001744	active site
192222001745	HMMPfam hit to PF00885,6,7-dimethyl-8-ribityllumazine synthase, score 1.8e-77
192222001746	NeuB family; Region: NeuB; cl00496
192222001747	HMMPfam hit to PF00793, DAHP synthetase I family,score 9.7e-105
192222001748	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001749	EamA-like transporter family; Region: EamA; cl01037
192222001750	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
192222001751	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 6.9e-16
192222001752	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001753	GTP-binding protein Der; Reviewed; Region: PRK00093
192222001754	EngA1 GTPase contains the first domain of EngA; Region: EngA1; cd01894
192222001755	G1 box; other site
192222001756	GTP/Mg2+ binding site [chemical binding]; other site
192222001757	Switch I region; other site
192222001758	G2 box; other site
192222001759	Switch II region; other site
192222001760	G3 box; other site
192222001761	G4 box; other site
192222001762	G5 box; other site
192222001763	EngA2 GTPase contains the second domain of EngA; Region: EngA2; cd01895
192222001764	GTP/Mg2+ binding site [chemical binding]; other site
192222001765	Switch I region; other site
192222001766	G2 box; other site
192222001767	G3 box; other site
192222001768	Switch II region; other site
192222001769	G4 box; other site
192222001770	G5 box; other site
192222001771	HMMPfam hit to PF01926, GTPase of unknown function,score 2.7e-36
192222001772	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001773	HMMPfam hit to PF01926, GTPase of unknown function,score 1.3e-39
192222001774	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001775	shikimate kinase; Reviewed; Region: aroK; PRK00131
192222001776	Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis...; Region: SK; cd00464
192222001777	ADP binding site [chemical binding]; other site
192222001778	magnesium binding site [ion binding]; other site
192222001779	putative shikimate binding site; other site
192222001780	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001781	HMMPfam hit to PF01202, Shikimate kinase, score 3.6e-48
192222001782	tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282
192222001783	catalytic core domain of tryptophanyl-tRNA synthetase; Region: TrpRS_core; cd00806
192222001784	active site
192222001785	HIGH motif; other site
192222001786	dimer interface [polypeptide binding]; other site
192222001787	KMSKS motif; other site
192222001788	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 1.1e-66
192222001789	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222001790	seryl-tRNA synthetase; Provisional; Region: PRK05431
192222001791	Seryl-tRNA synthetase N-terminal domain; Region: Seryl_tRNA_N; pfam02403
192222001792	Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound...; Region: SerRS_core; cd00770
192222001793	dimer interface [polypeptide binding]; other site
192222001794	active site
192222001795	motif 1; other site
192222001796	motif 2; other site
192222001797	motif 3; other site
192222001798	HMMPfam hit to PF02403, Seryl-tRNA synthetase N-terminal domain, score 9.1e-26
192222001799	HMMPfam hit to PF00587, tRNA synthetase class II core domain (G,, score 1.4e-52
192222001800	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222001801	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cl02429
192222001802	binding surface
192222001803	TPR motif; other site
192222001804	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
192222001805	TPR motif; other site
192222001806	1 probable transmembrane helix predicted for Cj0390 by TMHMM2.0 at aa 90-112
192222001807	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.12; HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.032
192222001808	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.43
192222001809	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.15; HMMPfam hit to PF00515, Tetratricopeptide repeat,score 0.034
192222001810	HMMPfam hit to PF00515, Tetratricopeptide repeat,score 5.3e-06; HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.00052
192222001811	Pyruvate kinase [Carbohydrate transport and metabolism]; Region: PykF; COG0469
192222001812	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low...; Region: Pyruvate_Kinase; cl09155
192222001813	domain interfaces; other site
192222001814	active site
192222001815	HMMPfam hit to PF02887, Pyruvate kinase, alpha/beta domain, score 1.4e-11
192222001816	HMMPfam hit to PF00224, Pyruvate kinase, barrel domain, score 2.4e-135
192222001817	PS00659 Glycosyl hydrolases family 5 signature
192222001818	Predicted dehydrogenase [General function prediction only]; Region: COG0579
192222001819	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001820	HMMPfam hit to PF06039, Malate:quinone oxidoreductase (Mqo), score 1.3e-08
192222001821	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001822	PS00110 Pyruvate kinase active site signature
192222001823	Type III pantothenate kinase; Region: Pan_kinase; cl09130
192222001824	HMMPfam hit to PF03309, Bordetella pertussis Bvg accessory fac, score 7.3e-09
192222001825	PQQ-like domain; Region: PQQ_2; pfam13360
192222001826	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001827	1 probable transmembrane helix predicted for Cj0397c by TMHMM2.0 at aa 36-55
192222001828	Glu-tRNAGln amidotransferase C subunit; Region: Glu-tRNAGln; cl00495
192222001829	HMMPfam hit to PF02686, Glu-tRNAGln amidotransferase C subunit, score 5.1e-09
192222001830	Colicin V production protein; Region: Colicin_V; cl00567
192222001831	HMMPfam hit to PF02674, Colicin V production protein, score 1.4e-48
192222001832	4 probable transmembrane helices predicted for Cj0399 by TMHMM2.0 at aa 5-27, 31-48, 68-90 and 105-127
192222001833	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001834	ferric uptake regulator; Provisional; Region: fur; PRK09462
192222001835	Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators; Region: Fur_like; cd07153
192222001836	metal binding site 2 [ion binding]; metal-binding site
192222001837	putative DNA binding helix; other site
192222001838	metal binding site 1 [ion binding]; metal-binding site
192222001839	dimer interface [polypeptide binding]; other site
192222001840	structural Zn2+ binding site [ion binding]; other site
192222001841	HMMPfam hit to PF01475, Ferric uptake regulator family, score 1.4e-63
192222001842	lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484
192222001843	LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop; Region: LysRS_N; cd04322
192222001844	dimer interface [polypeptide binding]; other site
192222001845	putative anticodon binding site; other site
192222001846	Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three...; Region: LysRS_core; cd00775
192222001847	motif 1; other site
192222001848	active site
192222001849	motif 2; other site
192222001850	motif 3; other site
192222001851	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 5e-15
192222001852	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 4.6e-205
192222001853	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222001854	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222001855	serine hydroxymethyltransferase; Reviewed; Region: PRK13034
192222001856	Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl...; Region: SHMT; cd00378
192222001857	dimer interface [polypeptide binding]; other site
192222001858	active site
192222001859	glycine-pyridoxal phosphate binding site [chemical binding]; other site
192222001860	folate binding site [chemical binding]; other site
192222001861	HMMPfam hit to PF00464, Serine hydroxymethyltransferase, score 1.9e-282
192222001862	PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site
192222001863	Domain of unknown function (DUF1882); Region: DUF1882; pfam08966
192222001864	Sporulation related domain; Region: SPOR; cl10051
192222001865	1 probable transmembrane helix predicted for Cj0404 by TMHMM2.0 at aa 25-42
192222001866	shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258
192222001867	Shikimate dehydrogenase substrate binding domain; Region: Shikimate_dh_N; pfam08501
192222001868	NAD(P) binding domain of Shikimate dehydrogenase; Region: NAD_bind_Shikimate_DH; cd01065
192222001869	shikimate binding site; other site
192222001870	NAD(P) binding site [chemical binding]; other site
192222001871	HMMPfam hit to PF01488, Shikimate / quinate 5-dehydrogenase, score 8.1e-54
192222001872	1 probable transmembrane helix predicted for Cj0406c by TMHMM2.0 at aa 5-27
192222001873	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001874	Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478
192222001875	HMMPfam hit to PF01790, Prolipoprotein diacylglyceryl transferase, score 4e-120
192222001876	7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45, 66-88, 103-125, 132-154,184-201, 206-225 and 240-262
192222001877	PS01311 Prolipoprotein diacylglyceryl transferase signature
192222001878	Quinol:fumarate reductase (QFR) Type B subfamily, transmembrane subunit;  QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinone...; Region: QFR_TypeB_TM; cd00581
192222001879	Iron-sulfur protein interface; other site
192222001880	proximal heme binding site [chemical binding]; other site
192222001881	distal heme binding site [chemical binding]; other site
192222001882	dimer interface [polypeptide binding]; other site
192222001883	HMMPfam hit to PF02967, Fumarate reductase respiratory complex, tr, score 8e-102
192222001884	PS00228 Tubulin-beta mRNA autoregulation signal
192222001885	5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51, 73-95, 125-147, 167-189 and 213-235
192222001886	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001887	fumarate reductase flavoprotein subunit; Provisional; Region: PRK08626
192222001888	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001889	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
192222001890	HMMPfam hit to PF00890, FAD binding domain, score 2e-160
192222001891	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 6.4e-53
192222001892	fumarate reductase iron-sulfur subunit; Provisional; Region: frdB; PRK13552
192222001893	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cl00159
192222001894	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
192222001895	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 0.0037
192222001896	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature
192222001897	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0015
192222001898	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001899	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
192222001900	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222001901	Dynamin family; Region: Dynamin_N; pfam00350
192222001902	G1 box; other site
192222001903	GTP/Mg2+ binding site [chemical binding]; other site
192222001904	G2 box; other site
192222001905	Switch I region; other site
192222001906	Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins; Region: DLP_2; cd09912
192222001907	G3 box; other site
192222001908	Switch II region; other site
192222001909	GTP/Mg2+ binding site [chemical binding]; other site
192222001910	G4 box; other site
192222001911	G5 box; other site
192222001912	HMMPfam hit to PF01926, GTPase of unknown function,score 2e-08
192222001913	HMMPfam hit to PF00350, Dynamin family, score 8.1e-52
192222001914	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001915	Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins; Region: DLP_2; cd09912
192222001916	Dynamin family; Region: Dynamin_N; pfam00350
192222001917	G1 box; other site
192222001918	GTP/Mg2+ binding site [chemical binding]; other site
192222001919	G2 box; other site
192222001920	Switch I region; other site
192222001921	G3 box; other site
192222001922	Switch II region; other site
192222001923	G4 box; other site
192222001924	G5 box; other site
192222001925	HMMPfam hit to PF01926, GTPase of unknown function,score 1.5e-07
192222001926	HMMPfam hit to PF00350, Dynamin family, score 6.6e-39
192222001927	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001928	FOG: TPR repeat, SEL1 subfamily [General function prediction only]; Region: COG0790
192222001929	Sel1 repeat; Region: Sel1; cl02723
192222001930	Sel1 repeat; Region: Sel1; cl02723
192222001931	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.013
192222001932	Gluconate 2-dehydrogenase subunit 3; Region: Gluconate_2-dh3; pfam13618
192222001933	1 probable transmembrane helix predicted for Cj0414 by TMHMM2.0 at aa 11-33
192222001934	Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]; Region: BetA; COG2303
192222001935	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001936	GMC oxidoreductase; Region: GMC_oxred_C; pfam05199
192222001937	SprA-related family; Region: SprA-related; pfam12118
192222001938	HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis...; Region: HIT_like; cl00228
192222001939	YceI-like domain; Region: YceI; cl01001
192222001940	HMMPfam hit to PF04264, YceI like family, score 1e-77
192222001941	Helix-turn-helix domains; Region: HTH; cl00088
192222001942	Superinfection immunity protein; Region: Imm_superinfect; pfam14373
192222001943	2 probable transmembrane helices predicted for Cj0423 by TMHMM2.0 at aa 5-27 and 37-59
192222001944	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2849
192222001945	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222001946	HMMPfam hit to PF07661, MORN repeat variant, score 3.3
192222001947	HMMPfam hit to PF07661, MORN repeat variant, score 0.0044
192222001948	HMMPfam hit to PF07661, MORN repeat variant, score 0.0016
192222001949	HMMPfam hit to PF07661, MORN repeat variant, score 43
192222001950	HMMPfam hit to PF07661, MORN repeat variant, score 0.12
192222001951	HMMPfam hit to PF07661, MORN repeat variant, score 0.0083
192222001952	HMMPfam hit to PF07661, MORN repeat variant, score 4.1
192222001953	ABC transporter ATP-binding protein; Provisional; Region: PRK15064
192222001954	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222001955	Walker A/P-loop; other site
192222001956	ATP binding site [chemical binding]; other site
192222001957	Q-loop/lid; other site
192222001958	ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated...; Region: ABCF_EF-3; cd03221
192222001959	ABC transporter; Region: ABC_tran_2; pfam12848
192222001960	ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated...; Region: ABCF_EF-3; cd03221
192222001961	HMMPfam hit to PF00005, ABC transporter, score 1.9e-33
192222001962	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001963	HMMPfam hit to PF00005, ABC transporter, score 1.1e-33
192222001964	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001965	S-layer like family, C-terminal region; Region: S_layer_C; pfam05124
192222001966	Uncharacterized protein family UPF0029; Region: UPF0029; pfam01205
192222001967	HMMPfam hit to PF01205, Uncharacterized protein family UPF0029, score 3.1e-47
192222001968	9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31, 69-91, 104-137, 147-169,176-195, 205-227, 239-256, 260-277 and 298-320
192222001969	1 probable transmembrane helix predicted for Cj0431 by TMHMM2.0 at aa 5-27
192222001970	PS00017 ATP/GTP-binding site motif A (P-loop)
192222001971	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional; Region: murD; PRK03815
192222001972	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
192222001973	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
192222001974	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 0.00084
192222001975	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 9.5e-09
192222001976	PS01011 Folylpolyglutamate synthase signature 1
192222001977	phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional; Region: mraY; PRK00108
192222001978	Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of...; Region: GT_MraY; cd06852
192222001979	Mg++ binding site [ion binding]; other site
192222001980	putative catalytic motif [active]
192222001981	putative substrate binding site [chemical binding]; other site
192222001982	HMMPfam hit to PF00953, Glycosyl transferase, score 2.9e-62
192222001983	Phosphoglyceromutase [Carbohydrate transport and metabolism]; Region: GpmI; COG0696
192222001984	Sulfatase; Region: Sulfatase; cl10460
192222001985	HMMPfam hit to PF06415, BPG-independent PGAM N-terminus (iPGM_N, score 1.4e-217
192222001986	HMMPfam hit to PF01676, Metalloenzyme superfamily,score 4.8e-35
192222001987	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001988	3-oxoacyl-(acyl-carrier-protein) reductase; Region: 3oxo_ACP_reduc; TIGR01830
192222001989	NAD(P) binding site [chemical binding]; other site
192222001990	active site
192222001991	HMMPfam hit to PF00106, short chain dehydrogenase,score 3.3e-73
192222001992	PS00061 Short-chain dehydrogenases/reductases family signature
192222001993	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
192222001994	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 9.8e-09
192222001995	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222001996	succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; Region: sdhA_frdA_Gneg; TIGR01812
192222001997	Fumarate reductase flavoprotein C-term; Region: Succ_DH_flav_C; pfam02910
192222001998	HMMPfam hit to PF00890, FAD binding domain, score 6.2e-115
192222001999	HMMPfam hit to PF02910, Fumarate reductase/succinate dehydroge, score 1.6e-35
192222002000	Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]; Region: FrdB; COG0479
192222002001	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cl00159
192222002002	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 0.018
192222002003	PS00197 2Fe-2S ferredoxins, iron-sulfur binding region signature
192222002004	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222002005	Heterodisulfide reductase, subunit B [Energy production and conversion]; Region: HdrB; COG2048
192222002006	Cysteine-rich domain; Region: CCG; pfam02754
192222002007	Cysteine-rich domain; Region: CCG; pfam02754
192222002008	HMMPfam hit to PF02754, Cysteine-rich domain, score 3.7e-06
192222002009	HMMPfam hit to PF02754, Cysteine-rich domain, score 6.4e-11
192222002010	Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This...; Region: HemeO; cl15243
192222002011	HMMPfam hit to PF03070, TENA/THI-4 family, score 1.2e-52
192222002012	Phosphopantetheine attachment site; Region: PP-binding; cl09936
192222002013	HMMPfam hit to PF00550, Phosphopantetheine attachment site, score 3.2e-13
192222002014	PS00012 Phosphopantetheine attachment site
192222002015	3-oxoacyl-(acyl carrier protein) synthase II; Reviewed; Region: PRK08439
192222002016	Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen...; Region: KAS_I_II; cd00834
192222002017	dimer interface [polypeptide binding]; other site
192222002018	active site
192222002019	HMMPfam hit to PF00109, Beta-ketoacyl synthase,N-terminal do, score 1.1e-67
192222002020	HMMPfam hit to PF02801, Beta-ketoacyl synthase,C-terminal do, score 8.4e-54
192222002021	PS00107 Protein kinases ATP-binding region signature
192222002022	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Region: ACCA; cl15772
192222002023	acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional; Region: accA; CHL00198
192222002024	HMMPfam hit to PF03255, Acetyl co-enzyme A carboxylase carboxyltrans, score 3.3e-66
192222002025	Original (2000) note: Cj0444, probable tonB-denpendent outer membrane receptor pseudogene, len: 2072 bp; similar to parts of various tonB-denpendent outer membrane receptors e.g. IRGA_VIBCH iron-regulated outer membrane virulence protein (652 aa), CIRA_ECOLI colicin I receptor precursor (663 aa), and FEPA_ECOLI ferrienterobactin receptor precursor (746 aa). No Hp ortholog. Contains N-terminal signal sequence, PS01156 TonB-dependent receptor proteins signature 2 and Pfam match to entry PF00593 TonB_boxC, TonB dependant receptor C-terminal region, score 28.00, E-value 4.3e-05. There is at least one frameshift and one stop codon in this CDS; Updated (2006) note: Pfam domain PF07715 TonB-dependent Receptor Plug Domain identified within CDS. Further support given to product function. Some characterisation work in various bacteria. However,identity scores were marginal. Thus,  was added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other; PMID:15632442
192222002026	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2e-27
192222002027	HMMPfam hit to PF00593, TonB dependent receptor,score 3.1e-33
192222002028	ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+; Region: ADPRase_NUDT5; cd03424
192222002029	dimer interface [polypeptide binding]; other site
192222002030	ADP-ribose binding site [chemical binding]; other site
192222002031	active site
192222002032	nudix motif; other site
192222002033	metal binding site [ion binding]; metal-binding site
192222002034	HMMPfam hit to PF00293, NUDIX domain, score 7.3e-11
192222002035	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222002036	dimer interface [polypeptide binding]; other site
192222002037	putative CheW interface [polypeptide binding]; other site
192222002038	MCP-signal associated domain; Region: MCPsignal_assoc; pfam13682
192222002039	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 7.4e-12
192222002040	Protein of unknown function (DUF465); Region: DUF465; cl01070
192222002041	HMMPfam hit to PF04325, Protein of unknown function (DUF465), score 9.2e-21
192222002042	Ribosomal L28 family; Region: Ribosomal_L28; cl00367
192222002043	HMMPfam hit to PF00830, Ribosomal L28 family, score 1.3e-23
192222002044	Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose...; Region: RPE; cd00429
192222002045	ribulose-phosphate 3-epimerase; Region: rpe; TIGR01163
192222002046	substrate binding site [chemical binding]; other site
192222002047	hexamer interface [polypeptide binding]; other site
192222002048	metal binding site [ion binding]; metal-binding site
192222002049	HMMPfam hit to PF00834, Ribulose-phosphate 3 epimerase family, score 2.7e-102
192222002050	PS01085 Ribulose-phosphate 3-epimerase family signature 1
192222002051	PS01086 Ribulose-phosphate 3-epimerase family signature 2
192222002052	DNA polymerase III subunit epsilon; Provisional; Region: PRK08517
192222002053	DEDDh 3'-5' exonuclease domain family; Region: DEDDh; cd06127
192222002054	active site
192222002055	catalytic site [active]
192222002056	substrate binding site [chemical binding]; other site
192222002057	HMMPfam hit to PF00929, Exonuclease, score 1.1e-35
192222002058	ThiC family; Region: ThiC; cl08031
192222002059	HMMPfam hit to PF01964, ThiC family, score 8.1e-216
192222002060	1 probable transmembrane helix predicted for Cj0454c by TMHMM2.0 at aa 29-51
192222002061	1 probable transmembrane helix predicted for Cj0455c by TMHMM2.0 at aa 20-39
192222002062	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374; Region: LPLAT_DUF374-like; cd07983
192222002063	putative acyl-acceptor binding pocket; other site
192222002064	HMMPfam hit to PF04028, Domain of unknown function (DUF374), score 1.7e-50
192222002065	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002066	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
192222002067	(dimethylallyl)adenosine tRNA methylthiotransferase; Provisional; Region: PRK14339
192222002068	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222002069	FeS/SAM binding site; other site
192222002070	TRAM domain; Region: TRAM; cl01282
192222002071	HMMPfam hit to PF01938, TRAM domain, score 2.9e-10
192222002072	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.8e-32
192222002073	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature
192222002074	PS01278 Uncharacterized protein family UPF0004 signature
192222002075	HMMPfam hit to PF00919, Uncharacterized protein family UPF0004, score 1.6e-40
192222002076	transcription elongation factor NusA; Provisional; Region: nusA; PRK12328
192222002077	NusA N-terminal domain; Region: NusA_N; pfam08529
192222002078	S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three...; Region: S1_NusA; cd04455
192222002079	RNA binding site [nucleotide binding]; other site
192222002080	homodimer interface [polypeptide binding]; other site
192222002081	K homology RNA-binding domain, type I.  KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that...; Region: KH-I; cl00098
192222002082	NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of...; Region: NusA_KH; cd02134
192222002083	G-X-X-G motif; other site
192222002084	H+ Antiporter protein; Region: 2A0121; TIGR00900
192222002085	HMMPfam hit to PF04332, Protein of unknown function (DUF475), score 3e-192
192222002086	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.2e-15
192222002087	hypothetical protein; Provisional; Region: PRK08445
192222002088	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222002089	FeS/SAM binding site; other site
192222002090	HMMPfam hit to PF04055, Radical SAM superfamily,score 9.3e-25
192222002091	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
192222002092	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
192222002093	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 1.5e-34
192222002094	ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917
192222002095	RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a...; Region: RecG_wedge_OBF; cd04488
192222002096	generic binding surface II; other site
192222002097	ssDNA binding site; other site
192222002098	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
192222002099	ATP binding site [chemical binding]; other site
192222002100	putative Mg++ binding site [ion binding]; other site
192222002101	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
192222002102	nucleotide binding region [chemical binding]; other site
192222002103	ATP-binding site [chemical binding]; other site
192222002104	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 4.1e-06
192222002105	HMMPfam hit to PF00270, DEAD/DEAH box helicase,score 6.9e-25
192222002106	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002107	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 2.2e-13
192222002108	Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct...; Region: Trunc_globin; cd00454
192222002109	apolar tunnel; other site
192222002110	heme binding site [chemical binding]; other site
192222002111	dimerization interface [polypeptide binding]; other site
192222002112	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; Region: Crp; COG0664
192222002113	effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO...; Region: CAP_ED; cd00038
192222002114	ligand binding site [chemical binding]; other site
192222002115	flexible hinge region; other site
192222002116	Helix-turn-helix domains; Region: HTH; cl00088
192222002117	HMMPfam hit to PF00027, Cyclic nucleotide-binding domain, score 2.2e-15
192222002118	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222002119	dimer interface [polypeptide binding]; other site
192222002120	conserved gate region; other site
192222002121	putative PBP binding loops; other site
192222002122	ABC-ATPase subunit interface; other site
192222002123	3 probable transmembrane helices predicted for Cj0467 by TMHMM2.0 at aa 15-37, 151-173 and 204-226
192222002124	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.8e-15
192222002125	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222002126	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222002127	dimer interface [polypeptide binding]; other site
192222002128	conserved gate region; other site
192222002129	putative PBP binding loops; other site
192222002130	ABC-ATPase subunit interface; other site
192222002131	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 8.5e-13
192222002132	5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42, 55-77, 87-109, 151-171 and 186-208
192222002133	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222002134	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
192222002135	HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP...; Region: ABC_HisP_GlnQ_permeases; cd03262
192222002136	Walker A/P-loop; other site
192222002137	ATP binding site [chemical binding]; other site
192222002138	Q-loop/lid; other site
192222002139	ABC transporter signature motif; other site
192222002140	Walker B; other site
192222002141	D-loop; other site
192222002142	H-loop/switch region; other site
192222002143	HMMPfam hit to PF00005, ABC transporter, score 1.7e-65
192222002144	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002145	PS00211 ABC transporters family signature
192222002146	elongation factor Tu; Reviewed; Region: PRK00049
192222002147	Elongation Factor Tu (EF-Tu) GTP-binding proteins; Region: EF_Tu; cd01884
192222002148	G1 box; other site
192222002149	GEF interaction site [polypeptide binding]; other site
192222002150	GTP/Mg2+ binding site [chemical binding]; other site
192222002151	Switch I region; other site
192222002152	G2 box; other site
192222002153	G3 box; other site
192222002154	Switch II region; other site
192222002155	G4 box; other site
192222002156	G5 box; other site
192222002157	EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the...; Region: EFTU_II; cd03697
192222002158	Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts); Region: EFTU_III; cd03707
192222002159	Antibiotic Binding Site [chemical binding]; other site
192222002160	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 3.9e-98
192222002161	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002162	PS00301 GTP-binding elongation factors signature
192222002163	HMMPfam hit to PF03144, Elongation factor Tu domain, score 3.6e-25
192222002164	HMMPfam hit to PF03143, Elongation factor Tu C-terminal domain, score 1.4e-59
192222002165	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002166	Ribosomal protein L33; Region: Ribosomal_L33; cl00383
192222002167	HMMPfam hit to PF00471, Ribosomal protein L33,score 3.3e-21
192222002168	PS00582 Ribosomal protein L33 signature
192222002169	SecE/Sec61-gamma subunits of protein translocation complex; Region: SecE; cl00481
192222002170	HMMPfam hit to PF00584, SecE/Sec61-gamma subunits of protein translo, score 4.9e-09
192222002171	1 probable transmembrane helix predicted for Cj0472 by TMHMM2.0 at aa 29-51
192222002172	transcription antitermination protein NusG; Validated; Region: nusG; PRK05609
192222002173	Bacterial N-Utilization Substance G (NusG) N-terminal (NGN) domain, subgroup 1; Region: NGN_Bact_1; cd09891
192222002174	putative homodimer interface [polypeptide binding]; other site
192222002175	KOW motif; Region: KOW; cl00354
192222002176	HMMPfam hit to PF02357, Transcription termination factor nusG, score 2e-14
192222002177	HMMPfam hit to PF00467, KOW motif, score 2.4e-07
192222002178	PS01014 Transcription termination factor nusG signature
192222002179	50S ribosomal protein L11; Validated; Region: rplK; PRK00140
192222002180	Ribosomal protein L11. Ribosomal protein L11, together with proteins L10 and L7/L12, and 23S rRNA, form the L7/L12 stalk on the surface of the large subunit of the ribosome. The homologous eukaryotic cytoplasmic protein is also called 60S ribosomal...; Region: Ribosomal_L11; cd00349
192222002181	23S rRNA interface [nucleotide binding]; other site
192222002182	L7/L12 interface [polypeptide binding]; other site
192222002183	putative thiostrepton binding site; other site
192222002184	L25 interface [polypeptide binding]; other site
192222002185	HMMPfam hit to PF03946, Ribosomal protein L11,N-terminal dom, score 1.4e-33
192222002186	HMMPfam hit to PF00298, Ribosomal protein L11, RNA binding do, score 9.7e-27
192222002187	PS00359 Ribosomal protein L11 signature
192222002188	Ribosomal protein L1.  The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA.  In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds...; Region: Ribosomal_L1; cd00403
192222002189	mRNA/rRNA interface [nucleotide binding]; other site
192222002190	HMMPfam hit to PF00687, Ribosomal protein L1p/L10e family, score 3.8e-119
192222002191	PS01199 Ribosomal protein L1 signature
192222002192	Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein...; Region: Ribosomal_L10; cd05797
192222002193	23S rRNA interface [nucleotide binding]; other site
192222002194	Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site
192222002195	HMMPfam hit to PF00466, Ribosomal protein L10,score 9.6e-20
192222002196	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002197	Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of...; Region: Ribosomal_L7_L12; cd00387
192222002198	L11 interface [polypeptide binding]; other site
192222002199	putative EF-Tu interaction site [polypeptide binding]; other site
192222002200	putative EF-G interaction site [polypeptide binding]; other site
192222002201	HMMPfam hit to PF00542, Ribosomal protein L7/L12 C-terminal dom, score 2.3e-38
192222002202	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cl04593
192222002203	DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566
192222002204	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
192222002205	RPB11 interaction site [polypeptide binding]; other site
192222002206	RPB12 interaction site [polypeptide binding]; other site
192222002207	RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase...; Region: RNA_pol_B_RPB2; cd00653
192222002208	RPB3 interaction site [polypeptide binding]; other site
192222002209	RPB1 interaction site [polypeptide binding]; other site
192222002210	RPB11 interaction site [polypeptide binding]; other site
192222002211	RPB10 interaction site [polypeptide binding]; other site
192222002212	HMMPfam hit to PF04563, RNA polymerase beta subunit, score 3e-05
192222002213	HMMPfam hit to PF04561, RNA polymerase Rpb2,domain, score 1.8e-11
192222002214	HMMPfam hit to PF04565, RNA polymerase Rpb2,domain, score 3.9e-44
192222002215	HMMPfam hit to PF00562, RNA polymerase Rpb2,domain, score 1.4e-148
192222002216	PS01166 RNA polymerases beta chain signature
192222002217	HMMPfam hit to PF04560, RNA polymerase Rpb2,domain, score 3.7e-46
192222002218	DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]; Region: RpoC; COG0086
192222002219	RNA polymerase Rpb1, domain 1; Region: RNA_pol_Rpb1_1; pfam04997
192222002220	RNA polymerase Rpb1, domain 2; Region: RNA_pol_Rpb1_2; cl11591
192222002221	RNA polymerase Rpb1, domain 3; Region: RNA_pol_Rpb1_3; pfam04983
192222002222	RNA polymerase Rpb1, domain 4; Region: RNA_pol_Rpb1_4; pfam05000
192222002223	RNA polymerase Rpb1, domain 5; Region: RNA_pol_Rpb1_5; pfam04998
192222002224	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
192222002225	Rpb1 - Rpb6 interaction site [polypeptide binding]; other site
192222002226	bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional; Region: PRK14844
192222002227	Largest subunit of RNA polymerase (RNAP), C-terminal domain; Region: RNAP_largest_subunit_C; cl11429
192222002228	Largest subunit (beta') of Bacterial DNA-dependent RNA polymerase (RNAP), C-terminal domain; Region: RNAP_beta'_C; cd02655
192222002229	DNA binding site [nucleotide binding]
192222002230	Rpb1 (beta') - Rpb2 (beta) interaction site [polypeptide binding]; other site
192222002231	HMMPfam hit to PF04997, RNA polymerase Rpb1,domain, score 3.7e-127
192222002232	HMMPfam hit to PF00623, RNA polymerase Rpb1,domain, score 6.6e-84
192222002233	HMMPfam hit to PF04983, RNA polymerase Rpb1,domain, score 3.5e-44
192222002234	HMMPfam hit to PF05000, RNA polymerase Rpb1,domain, score 3.6e-33
192222002235	HMMPfam hit to PF04998, RNA polymerase Rpb1,domain, score 6.7e-68
192222002236	Transcriptional regulator [Transcription]; Region: IclR; COG1414
192222002237	Helix-turn-helix domains; Region: HTH; cl00088
192222002238	HMMPfam hit to PF01614, Bacterial transcriptional regulator, score 8.6e-16
192222002239	Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]; Region: DapA; COG0329
192222002240	Dihydrodipicolinate synthase family; Region: DHDPS-like; cd00408
192222002241	inhibitor site; inhibition site
192222002242	active site
192222002243	dimer interface [polypeptide binding]; other site
192222002244	catalytic residue [active]
192222002245	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 3.8e-30
192222002246	Altronate dehydratase [Carbohydrate transport and metabolism]; Region: UxaA; COG2721
192222002247	HMMPfam hit to PF04292, D-galactarate dehydratase / Altronate hydrol, score 1.1e-47
192222002248	D-galactarate dehydratase / Altronate hydrolase, C terminus; Region: GD_AH_C; pfam04295
192222002249	Altronate dehydratase [Carbohydrate transport and metabolism]; Region: UxaA; COG2721
192222002250	HMMPfam hit to PF04295, D-galactarate dehydratase / Altronate hydrol, score 3.8e-251
192222002251	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002252	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222002253	putative substrate translocation pore; other site
192222002254	11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41, 56-78, 85-104, 114-136,145-167, 177-199, 242-264, 279-301, 308-330, 334-356 and 365-387
192222002255	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 6.8e-47
192222002256	short chain dehydrogenase; Provisional; Region: PRK08628
192222002257	classical (c) SDRs; Region: SDR_c; cd05233
192222002258	NAD(P) binding site [chemical binding]; other site
192222002259	active site
192222002260	HMMPfam hit to PF00106, short chain dehydrogenase,score 2.8e-49
192222002261	Fucose permease [Carbohydrate transport and metabolism]; Region: FucP; COG0738
192222002262	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cl11420
192222002263	12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31, 46-68, 75-97, 102-124,144-163, 183-205, 236-258, 273-290, 303-320, 325-347,359-381 and 385-407
192222002264	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.2e-30
192222002265	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002266	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
192222002267	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
192222002268	HMMPfam hit to PF04909, Amidohydrolase, score 3.4e-29
192222002269	Domain of unknown function (DUF718); Region: DUF718; cl01281
192222002270	HMMPfam hit to PF05336, Protein of unknown function (DUF718), score 3e-63
192222002271	NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961
192222002272	Escherichia coli lactaldehyde dehydrogenase AldA-like; Region: ALDH_LactADH-AldA; cd07088
192222002273	NAD binding site [chemical binding]; other site
192222002274	catalytic residues [active]
192222002275	substrate binding site [chemical binding]; other site
192222002276	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 9.2e-130
192222002277	1 probable transmembrane helix predicted for Cj0490 by TMHMM2.0 at aa 46-68
192222002278	PS00687 Aldehyde dehydrogenases glutamic acid active site
192222002279	S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit...; Region: Ribosomal_S12; cd03368
192222002280	S17 interaction site [polypeptide binding]; other site
192222002281	S8 interaction site; other site
192222002282	16S rRNA interaction site [nucleotide binding]; other site
192222002283	streptomycin interaction site [chemical binding]; other site
192222002284	23S rRNA interaction site [nucleotide binding]; other site
192222002285	aminoacyl-tRNA interaction site (A-site) [nucleotide binding]; other site
192222002286	HMMPfam hit to PF00164, Ribosomal protein S12,score 4.3e-73
192222002287	PS00055 Ribosomal protein S12 signature
192222002288	Ribosomal protein S7p/S5e; Region: Ribosomal_S7; cl00313
192222002289	HMMPfam hit to PF00177, Ribosomal protein S7p/S5e,score 4.1e-74
192222002290	PS00052 Ribosomal protein S7 signature
192222002291	elongation factor G; Reviewed; Region: PRK00007
192222002292	Elongation factor G (EF-G) family involved in both the elongation and ribosome recycling phases of protein synthesis; Region: EF-G; cd01886
192222002293	G1 box; other site
192222002294	putative GEF interaction site [polypeptide binding]; other site
192222002295	GTP/Mg2+ binding site [chemical binding]; other site
192222002296	Switch I region; other site
192222002297	G2 box; other site
192222002298	G3 box; other site
192222002299	Switch II region; other site
192222002300	G4 box; other site
192222002301	G5 box; other site
192222002302	EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis...; Region: EFG_mtEFG_II; cd04088
192222002303	EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2...; Region: EFG_mtEFG1_IV; cd01434
192222002304	EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G.  Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2...; Region: EFG_mtEFG_C; cd03713
192222002305	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 5.8e-118
192222002306	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002307	PS00301 GTP-binding elongation factors signature
192222002308	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.2e-17
192222002309	HMMPfam hit to PF03764, Elongation factor G, domain IV, score 1.6e-75
192222002310	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 1.1e-53
192222002311	Predicted O-methyltransferase [General function prediction only]; Region: COG4123
192222002312	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222002313	S-adenosylmethionine binding site [chemical binding]; other site
192222002314	PS00092 N-6 Adenine-specific DNA methylases signature
192222002315	Flagellin N-methylase; Region: FliB; cl00497
192222002316	HMMPfam hit to PF03692, Uncharacterised protein family (UPF0153), score 1.4e-32
192222002317	putative PEP-CTERM system TPR-repeat lipoprotein; Region: PEP_TPR_lipo; TIGR02917
192222002318	1 probable transmembrane helix predicted for Cj0497 by TMHMM2.0 at aa 5-27
192222002319	PS00294 Prenyl group binding site (CAAX box)
192222002320	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002321	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 2.3
192222002322	Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the...; Region: IGPS; cd00331
192222002323	active site
192222002324	substrate (anthranilate) binding pocket [chemical binding]; other site
192222002325	product (indole) binding pocket [chemical binding]; other site
192222002326	ribulose/triose binding site [chemical binding]; other site
192222002327	phosphate binding site [ion binding]; other site
192222002328	HMMPfam hit to PF00218, Indole-3-glycerol phosphate synthase, score 2.7e-106
192222002329	PS00614 Indole-3-glycerol phosphate synthase signature
192222002330	FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into...; Region: FHIT; cd01275
192222002331	nucleotide binding site/active site [active]
192222002332	HIT family signature motif; other site
192222002333	catalytic residue [active]
192222002334	HMMPfam hit to PF01230, HIT domain, score 7.1e-06
192222002335	Predicted ATPase [General function prediction only]; Region: COG2603
192222002336	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125
192222002337	active site residue [active]
192222002338	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222002339	active site
192222002340	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002341	Original (2000) note: Cj0501, probable ammonium transporter pseudogene; len: 1114 bp; similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp, Ammonium Transporter Family, score 29.60,E-value 7.1e-12; Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus, not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other; PMID:12023896, PMID:10931328, PMID:15361618,PMID:14600241
192222002342	9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27, 40-62, 94-116, 121-143,158-180, 193-212, 222-244, 274-296 and 355-377
192222002343	HMMPfam hit to PF00909, Ammonium Transporter Family, score 7.1e-121
192222002344	ferrochelatase; Reviewed; Region: hemH; PRK00035
192222002345	Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_N; cd03411
192222002346	C-terminal domain interface [polypeptide binding]; other site
192222002347	active site
192222002348	Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is...; Region: Ferrochelatase_C; cd00419
192222002349	active site
192222002350	N-terminal domain interface [polypeptide binding]; other site
192222002351	HMMPfam hit to PF00762, Ferrochelatase, score 3e-72
192222002352	PS00534 Ferrochelatase signature
192222002353	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
192222002354	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222002355	HMMPfam hit to PF01408, Oxidoreductase family,NAD-binding Rossm, score 1.2e-20
192222002356	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
192222002357	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
192222002358	inhibitor-cofactor binding pocket; inhibition site
192222002359	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222002360	catalytic residue [active]
192222002361	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 4.8e-130
192222002362	alanyl-tRNA synthetase; Reviewed; Region: alaS; PRK00252
192222002363	Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of...; Region: AlaRS_core; cd00673
192222002364	motif 1; other site
192222002365	active site
192222002366	motif 2; other site
192222002367	motif 3; other site
192222002368	Threonyl and Alanyl tRNA synthetase second additional domain; Region: tRNA_SAD; cl08469
192222002369	DHHA1 domain; Region: DHHA1; pfam02272
192222002370	HMMPfam hit to PF01411, tRNA synthetases class II (A), score 0
192222002371	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222002372	HMMPfam hit to PF02272, DHHA1 domain, score 1.6e-16
192222002373	Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or...; Region: Maf; cd00555
192222002374	Maf-like protein; Region: Maf; pfam02545
192222002375	active site
192222002376	dimer interface [polypeptide binding]; other site
192222002377	HMMPfam hit to PF02545, Maf-like protein, score 6e-22
192222002378	Transglycosylase; Region: Transgly; cl07896
192222002379	penicillin-binding protein, 1A family; Region: PBP_1a_fam; TIGR02074
192222002380	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01009
192222002381	1 probable transmembrane helix predicted for Cj0508 by TMHMM2.0 at aa 7-29
192222002382	HMMPfam hit to PF00912, Transglycosylase, score 2.2e-82
192222002383	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 1.1e-33
192222002384	ATP-dependent chaperone ClpB; Region: chaperone_ClpB; TIGR03346
192222002385	Clp amino terminal domain; Region: Clp_N; pfam02861
192222002386	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222002387	Walker A motif; other site
192222002388	ATP binding site [chemical binding]; other site
192222002389	Walker B motif; other site
192222002390	arginine finger; other site
192222002391	Protein of unknown function (DUF972); Region: DUF972; pfam06156
192222002392	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222002393	Walker A motif; other site
192222002394	ATP binding site [chemical binding]; other site
192222002395	Walker B motif; other site
192222002396	arginine finger; other site
192222002397	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; cl11083
192222002398	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 5.2e-05
192222002399	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 3.2e-102
192222002400	PS00871 Chaperonins clpA/B signature 2
192222002401	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002402	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 7.4e-21
192222002403	PS00870 Chaperonins clpA/B signature 1
192222002404	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002405	HMMPfam hit to PF02861, Clp amino terminal domain,score 0.0056
192222002406	HMMPfam hit to PF02861, Clp amino terminal domain,score 6.5e-11
192222002407	Uncharacterized family 1; belongs to a superfamily containing the transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this family was previously known as part of DUF156; Region: CsoR-like_DUF156_1; cd10158
192222002408	putative homodimer interface [polypeptide binding]; other site
192222002409	putative homotetramer interface [polypeptide binding]; other site
192222002410	putative metal binding site [ion binding]; other site
192222002411	putative homodimer-homodimer interface [polypeptide binding]; other site
192222002412	putative allosteric switch controlling residues; other site
192222002413	HMMPfam hit to PF02583, Uncharacterised BCR,COG1937, score 2.1e-17
192222002414	C-terminal processing peptidase family S41; Region: Peptidase_S41; cl02526
192222002415	C-terminal peptidase (prc); Region: prc; TIGR00225
192222002416	PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for...; Region: PDZ_CTP_protease; cd00988
192222002417	protein binding site [polypeptide binding]; other site
192222002418	C-terminal processing peptidase; serine protease family S41; Region: Peptidase_S41_CPP; cd07560
192222002419	Catalytic dyad [active]
192222002420	1 probable transmembrane helix predicted for Cj0511 by TMHMM2.0 at aa 12-34
192222002421	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 1.9e-11
192222002422	HMMPfam hit to PF03572, Peptidase family S41, score 7.9e-76
192222002423	phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362
192222002424	bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase; Region: SAICAR_synt_PurC; cd01415
192222002425	ATP binding site [chemical binding]; other site
192222002426	active site
192222002427	substrate binding site [chemical binding]; other site
192222002428	HMMPfam hit to PF01259, SAICAR synthetase, score 1.6e-90
192222002429	PS01057 SAICAR synthetase signature 1
192222002430	Phosphoribosylformylglycinamidine (FGAM) synthase; Region: PurS; cl00789
192222002431	HMMPfam hit to PF02700,Phosphoribosylformylglycinamidine (FGAM) syn, score 1.3e-31
192222002432	Glutamine amidotransferase [Amino acid transport and metabolism]; Region: HisH; COG0118
192222002433	Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase; Region: GATase1_FGAR_AT; cd01740
192222002434	putative active site [active]
192222002435	catalytic triad [active]
192222002436	HMMPfam hit to PF07685, CobB/CobQ-like glutamine amidotransferase do, score 0.002
192222002437	1 probable transmembrane helix predicted for Cj0515 by TMHMM2.0 at aa 311-333
192222002438	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
192222002439	putative acyl-acceptor binding pocket; other site
192222002440	PS00989 Clathrin adaptor complexes small chain signature
192222002441	1 probable transmembrane helix predicted for Cj0516 by TMHMM2.0 at aa 10-29
192222002442	HMMPfam hit to PF01553, Acyltransferase, score 1.4e-22
192222002443	CrcB-like protein; Region: CRCB; cl09114
192222002444	HMMPfam hit to PF02537, CrcB-like protein, score 4e-29
192222002445	4 probable transmembrane helices predicted for Cj0517 by TMHMM2.0 at aa 5-23, 33-55, 62-84 and 99-121
192222002446	heat shock protein 90; Provisional; Region: PRK05218
192222002447	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cl00075
192222002448	PS00298 Heat shock hsp90 proteins family signature
192222002449	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 6.5e-13
192222002450	HMMPfam hit to PF00183, Hsp90 protein, score 2.7e-29
192222002451	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cd00158
192222002452	active site residue [active]
192222002453	1 probable transmembrane helix predicted for Cj0520 by TMHMM2.0 at aa 2-20
192222002454	Na+/Pi-cotransporter; Region: Na_Pi_cotrans; pfam02690
192222002455	HMMPfam hit to PF02690, Na+/Pi-cotransporter, score 2.1e-06
192222002456	3 probable transmembrane helices predicted for Cj0522 by TMHMM2.0 at aa 57-79, 89-111 and 118-140
192222002457	Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283
192222002458	3 probable transmembrane helices predicted for Cj0523 by TMHMM2.0 at aa 5-27, 31-53 and 65-87
192222002459	Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; Region: FtsI; COG0768
192222002460	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
192222002461	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01009
192222002462	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 2e-66
192222002463	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002464	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 6.6e-30
192222002465	1 probable transmembrane helix predicted for Cj0525c by TMHMM2.0 at aa 12-34
192222002466	Flagellar hook-basal body complex protein FliE; Region: FliE; cl09139
192222002467	HMMPfam hit to PF02049, Flagellar hook-basal body complex protein Fl, score 4.3e-22
192222002468	flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681
192222002469	Flagella basal body rod protein; Region: Flg_bb_rod; cl15793
192222002470	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222002471	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 2.2e-06
192222002472	HMMPfam hit to PF00460, Flagella basal body rod protein, score 8.5e-07
192222002473	PS00588 Flagella basal body rod proteins signature
192222002474	flagellar basal body rod protein FlgB; Reviewed; Region: flgB; PRK05680
192222002475	Flagella basal body rod protein; Region: Flg_bb_rod; cl15793
192222002476	YceG-like family; Region: YceG; pfam02618
192222002477	proteins similar to Escherichia coli yceG; Region: yceG_like; cd08010
192222002478	dimerization interface [polypeptide binding]; other site
192222002479	HMMPfam hit to PF02618, Aminodeoxychorismate lyase,score 4.8e-109
192222002480	1 probable transmembrane helix predicted for Cj0529c by TMHMM2.0 at aa 21-43
192222002481	Protein of unknown function; Region: DUF3971; pfam13116
192222002482	Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4, M13, M32 and M36 (fungalysins); Region: GluZincin; cl14813
192222002483	AsmA-like C-terminal region; Region: AsmA_2; cl15864
192222002484	1 probable transmembrane helix predicted for Cj0530 by TMHMM2.0 at aa 7-29
192222002485	Monomeric isocitrate dehydrogenase; Region: IDH; cl15383
192222002486	HMMPfam hit to PF03971, Monomeric isocitrate dehydrogenase, score 0
192222002487	Malate/lactate dehydrogenases [Energy production and conversion]; Region: Mdh; COG0039
192222002488	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222002489	NAD(P) binding site [chemical binding]; other site
192222002490	LDH/MDH dimer interface [polypeptide binding]; other site
192222002491	substrate binding site [chemical binding]; other site
192222002492	HMMPfam hit to PF00056, lactate/malate dehydrogenase, NAD binding do, score 2.4e-28
192222002493	HMMPfam hit to PF02866, lactate/malate dehydrogenase, alpha/beta C-t, score 4.6e-09
192222002494	succinyl-CoA synthetase subunit beta; Provisional; Region: sucC; PRK00696
192222002495	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222002496	CoA-ligase; Region: Ligase_CoA; cl02894
192222002497	HMMPfam hit to PF02222, ATP-grasp domain, score 5e-19
192222002498	HMMPfam hit to PF00549, CoA-ligase, score 1.4e-59
192222002499	PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3
192222002500	succinyl-CoA synthetase subunit alpha; Validated; Region: PRK05678
192222002501	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222002502	CoA-ligase; Region: Ligase_CoA; cl02894
192222002503	HMMPfam hit to PF02629, CoA binding domain, score 2.2e-59
192222002504	HMMPfam hit to PF00549, CoA-ligase, score 2.3e-39
192222002505	PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1
192222002506	PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site
192222002507	2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed; Region: oorD; PRK09626
192222002508	RPB11 and RPB3 subunits of RNA polymerase; Region: RNAP_RPB11_RPB3; cl11409
192222002509	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 2.5e-05
192222002510	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222002511	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 5.8e-05
192222002512	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222002513	2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed; Region: oorA; PRK09627
192222002514	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
192222002515	dimer interface [polypeptide binding]; other site
192222002516	PYR/PP interface [polypeptide binding]; other site
192222002517	TPP binding site [chemical binding]; other site
192222002518	substrate binding site [chemical binding]; other site
192222002519	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
192222002520	HMMPfam hit to PF01855, Pyruvate flavodoxin/ferredoxin oxidoreductas, score 5e-93
192222002521	2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed; Region: oorB; PRK09628
192222002522	Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR...; Region: TPP_OGFOR; cd03375
192222002523	TPP-binding site [chemical binding]; other site
192222002524	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 3.8e-87
192222002525	Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546
192222002526	2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated; Region: PRK08537
192222002527	HMMPfam hit to PF01558, Pyruvate ferredoxin/flavodoxin oxidoreductas, score 3.8e-35
192222002528	Domain of unknown function (DUF2018); Region: DUF2018; pfam09442
192222002529	Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]; Region: IspA; COG0142
192222002530	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
192222002531	substrate binding pocket [chemical binding]; other site
192222002532	chain length determination region; other site
192222002533	substrate-Mg2+ binding site; other site
192222002534	catalytic residues [active]
192222002535	aspartate-rich region 1; other site
192222002536	active site lid residues [active]
192222002537	aspartate-rich region 2; other site
192222002538	HMMPfam hit to PF00348, Polyprenyl synthetase,score 1.4e-43
192222002539	PS00723 Polyprenyl synthetases signature 1
192222002540	PS00444 Polyprenyl synthetases signature 2
192222002541	glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045
192222002542	NADP-binding domain of glutamyl-tRNA reductase; Region: NAD_bind_Glutamyl_tRNA_reduct; cd05213
192222002543	tRNA; other site
192222002544	putative tRNA binding site [nucleotide binding]; other site
192222002545	putative NADP binding site [chemical binding]; other site
192222002546	Glutamyl-tRNAGlu reductase, dimerisation domain; Region: GlutR_dimer; pfam00745
192222002547	HMMPfam hit to PF05201, Glutamyl-tRNAGlu reductase,N-terminal, score 4.3e-44
192222002548	HMMPfam hit to PF05200, Glutamyl-tRNAGlu reductase,NAD(P) bin, score 2e-66
192222002549	HMMPfam hit to PF00745, Glutamyl-tRNAGlu reductase,dimerisati, score 2.9e-30
192222002550	prolyl-tRNA synthetase; Provisional; Region: PRK09194
192222002551	Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of...; Region: ProRS_core_prok; cd00779
192222002552	dimer interface [polypeptide binding]; other site
192222002553	motif 1; other site
192222002554	active site
192222002555	motif 2; other site
192222002556	INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial. It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and...; Region: ProRS-INS; cd04334
192222002557	putative deacylase active site [active]
192222002558	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it attaches...; Region: class_II_aaRS-like_core; cl00268
192222002559	active site
192222002560	motif 3; other site
192222002561	ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding; Region: ProRS_anticodon_short; cd00861
192222002562	anticodon binding site; other site
192222002563	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 6.1e-53
192222002564	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222002565	HMMPfam hit to PF04073, YbaK / prolyl-tRNA synthetases associa, score 4.8e-06
192222002566	HMMPfam hit to PF03129, Anticodon binding domain,score 7.4e-20
192222002567	3 probable transmembrane helices predicted for Cj0544 by TMHMM2.0 at aa 10-28, 30-49 and 69-100
192222002568	porphobilinogen deaminase; Reviewed; Region: hemC; PRK00072
192222002569	Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of...; Region: HMBS; cd00494
192222002570	domain interfaces; other site
192222002571	active site
192222002572	HMMPfam hit to PF01379, Porphobilinogen deaminase,dipyrometh, score 5.7e-107
192222002573	HMMPfam hit to PF03900, Porphobilinogen deaminase,C-terminal, score 7.3e-15
192222002574	PS00533 Porphobilinogen deaminase cofactor-binding site
192222002575	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Region: UbiD; cl00311
192222002576	HMMPfam hit to PF01977,3-octaprenyl-4-hydroxybenzoate carboxy-lyase, score 4.7e-139
192222002577	FlaG protein; Region: FlaG; cl00591
192222002578	HMMPfam hit to PF03646, FlaG protein, score 4.7e-42
192222002579	flagellar capping protein; Provisional; Region: PRK12765
192222002580	Flagellar hook-associated protein 2 C-terminus; Region: FliD_N; pfam02465
192222002581	Flagellar hook-associated protein 2 C-terminus; Region: FliD_C; pfam07195
192222002582	HMMPfam hit to PF02465, Flagellar hook-associated protein, score 2.3e-33
192222002583	HMMPfam hit to PF07196, Flagellin hook IN motif,score 2.1e-10
192222002584	HMMPfam hit to PF07195, Flagellar hook-associated protein, score 4e-75
192222002585	Flagellar protein FliS; Region: FliS; cl00654
192222002586	HMMPfam hit to PF02561, Flagellar protein FliS,score 7.5e-35
192222002587	elongation factor P; Validated; Region: PRK00529
192222002588	Elongation factor P (EF-P) KOW-like domain; Region: EFP_N; pfam08207
192222002589	S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_1; cd04470
192222002590	RNA binding site [nucleotide binding]; other site
192222002591	S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with...; Region: S1_EF-P_repeat_2; cd05794
192222002592	RNA binding site [nucleotide binding]; other site
192222002593	HMMPfam hit to PF01132, Elongation factor P (EF-P),score 1.7e-109
192222002594	Protein of unknown function (DUF969); Region: DUF969; cl01573
192222002595	HMMPfam hit to PF06149, Protein of unknown function (DUF969), score 3.4e-157
192222002596	4 probable transmembrane helices predicted for Cj0552 by TMHMM2.0 at aa 20-42, 52-71, 99-121 and 192-214
192222002597	Protein of unknown function (DUF979); Region: DUF979; cl01572
192222002598	HMMPfam hit to PF06166, Protein of unknown function (DUF979), score 4.2e-214
192222002599	9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25, 46-68, 100-122, 129-151,166-188, 201-223, 228-245, 252-274 and 294-315
192222002600	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002601	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002602	Protein of unknown function (DUF2891); Region: DUF2891; pfam11199
192222002603	Dicarboxylate carrier protein MatC N-terminus; Region: MatC_N; pfam07158
192222002604	Di- and tricarboxylate transporters [Inorganic ion transport and metabolism]; Region: CitT; COG0471
192222002605	HMMPfam hit to PF07158, Dicarboxylate carrier protein MatC N-terminu, score 5e-36
192222002606	11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20, 24-41, 48-70, 94-116,137-159, 179-201, 222-244, 259-276, 281-303, 323-345 and 407-429
192222002607	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002608	Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]; Region: COG3618
192222002609	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
192222002610	active site
192222002611	HMMPfam hit to PF04909, Amidohydrolase, score 9.5e-37
192222002612	Predicted membrane protein [Function unknown]; Region: COG1289
192222002613	Fusaric acid resistance protein-like; Region: FUSC_2; cl15844
192222002614	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002615	Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Region: ALDH_F18-19_ProA-GPR; cd07079
192222002616	gamma-glutamyl phosphate reductase; Region: proA; TIGR00407
192222002617	putative catalytic cysteine [active]
192222002618	PS01223 Gamma-glutamyl phosphate reductase signature
192222002619	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
192222002620	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222002621	Pyridine nucleotide-disulphide oxidoreductase; Region: Pyr_redox; pfam00070
192222002622	HMMPfam hit to PF00070, Pyridine nucleotide-disulphide oxidoreducta, score 1.7e-25
192222002623	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002624	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
192222002625	MatE; Region: MatE; cl10513
192222002626	MatE; Region: MatE; cl10513
192222002627	12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34, 49-71, 91-113, 135-157,166-188, 192-214, 235-257, 267-289, 310-332, 352-374,387-409 and 414-433
192222002628	HMMPfam hit to PF01554, MatE, score 9.6e-25
192222002629	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002630	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222002631	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002632	Protein of unknown function (DUF2860); Region: DUF2860; pfam11059
192222002633	replicative DNA helicase; Provisional; Region: PRK08506
192222002634	DnaB-like helicase N terminal domain; Region: DnaB; pfam00772
192222002635	DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the  chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a...; Region: DnaB_C; cd00984
192222002636	Walker A motif; other site
192222002637	ATP binding site [chemical binding]; other site
192222002638	Walker B motif; other site
192222002639	DNA binding loops [nucleotide binding]
192222002640	HMMPfam hit to PF00772, DnaB-like helicase N terminal domain, score 1.2e-24
192222002641	HMMPfam hit to PF03796, DnaB-like helicase C terminal domain, score 5.7e-117
192222002642	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002643	2 probable transmembrane helices predicted for Cj0564 by TMHMM2.0 at aa 7-38 and 43-65
192222002644	Original (2000) note: Cj0565, probable pseudogene,len: 725 bp; similar to three consecutive genes in Hp; HP1587, HP1588 and HP1589; Updated (2006) note: Pfam domain PF03667 Uncharacterised protein family (UPF0174) identified within CDS. Conserved introduced to product function as motif identified. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Conserved hypothetical proteins
192222002645	HMMPfam hit to PF03667, Uncharacterised protein family (UPF0174), score 3.1e-51
192222002646	1 probable transmembrane helix predicted for Cj0568 by TMHMM2.0 at aa 30-49
192222002647	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002648	Predicted transcriptional regulator [Transcription]; Region: COG2378
192222002649	Helix-turn-helix domains; Region: HTH; cl00088
192222002650	WYL domain; Region: WYL; cl14852
192222002651	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional; Region: PRK09314
192222002652	3,4-dihydroxy-2-butanone 4-phosphate synthase; Region: DHBP_synthase; cl00336
192222002653	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cl00522
192222002654	PS00430 TonB-dependent receptor proteins signature 1
192222002655	HMMPfam hit to PF00926, 3,4-dihydroxy-2-butanone 4-phosphate sy, score 6.2e-114
192222002656	GatB domain; Region: GatB_Yqey; cl11497
192222002657	HMMPfam hit to PF02637, GatB/Yqey domain, score 2.7e-29
192222002658	acetolactate synthase 3 catalytic subunit; Validated; Region: PRK08527
192222002659	Pyrimidine (PYR) binding domain of POX and related proteins; Region: TPP_PYR_POX_like; cd07035
192222002660	PYR/PP interface [polypeptide binding]; other site
192222002661	dimer interface [polypeptide binding]; other site
192222002662	TPP binding site [chemical binding]; other site
192222002663	Thiamine pyrophosphate enzyme, central domain; Region: TPP_enzyme_M; cl00815
192222002664	Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the...; Region: TPP_AHAS; cd02015
192222002665	TPP-binding site [chemical binding]; other site
192222002666	dimer interface [polypeptide binding]; other site
192222002667	HMMPfam hit to PF02776, Thiamine pyrophosphate enzyme, N-termina, score 2.2e-89
192222002668	HMMPfam hit to PF00205, Thiamine pyrophosphate enzyme, central d, score 2.4e-62
192222002669	acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895
192222002670	N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS); Region: ACT_AHAS; cd04878
192222002671	putative valine binding site [chemical binding]; other site
192222002672	dimer interface [polypeptide binding]; other site
192222002673	Small subunit of acetolactate synthase; Region: ALS_ss_C; pfam10369
192222002674	HMMPfam hit to PF01842, ACT domain, score 1.2e-13
192222002675	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Region: lipid_A_lpxD; TIGR01853
192222002676	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Region: LpxD; pfam04613
192222002677	UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2; Region: LbH_LpxD; cd03352
192222002678	trimer interface [polypeptide binding]; other site
192222002679	active site
192222002680	UDP-GlcNAc binding site [chemical binding]; other site
192222002681	lipid binding site [chemical binding]; lipid-binding site
192222002682	HMMPfam hit to PF04613,UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a, score 1e-36
192222002683	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 76
192222002684	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0021
192222002685	PS00101 Hexapeptide-repeat containing-transferases signature
192222002686	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.0029
192222002687	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.12
192222002688	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 17
192222002689	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 7.4
192222002690	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 4
192222002691	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 93
192222002692	S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147
192222002693	Queuosine biosynthesis protein; Region: Queuosine_synth; cl00523
192222002694	HMMPfam hit to PF02547, Queuosine biosynthesis protein, score 1e-85
192222002695	Sec-independent protein translocase protein (TatC); Region: TatC; cl00521
192222002696	HMMPfam hit to PF00902, Sec-independent protein translocase, score 1.1e-85
192222002697	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002698	mttA/Hcf106 family; Region: MttA_Hcf106; cl00788
192222002699	HMMPfam hit to PF02416, mttA/Hcf106 family, score 8.2e-05
192222002700	coproporphyrinogen III oxidase; Provisional; Region: PRK08446
192222002701	HMMPfam hit to PF06969, HemN C-terminal region,score 4.5e-09
192222002702	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.4e-23
192222002703	Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant...; Region: Ap4A_hydrolase_plant_like; cd03671
192222002704	putative active site [active]
192222002705	Ap4A binding site [chemical binding]; other site
192222002706	nudix motif; other site
192222002707	putative metal binding site [ion binding]; other site
192222002708	HMMPfam hit to PF00293, NUDIX domain, score 4.9e-17
192222002709	PS00893 mutT domain signature
192222002710	aspartate kinase; Reviewed; Region: PRK06635
192222002711	AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive...; Region: AAK_AKii-LysC-BS; cd04261
192222002712	putative nucleotide binding site [chemical binding]; other site
192222002713	putative catalytic residues [active]
192222002714	putative Mg ion binding site [ion binding]; other site
192222002715	putative aspartate binding site [chemical binding]; other site
192222002716	ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins; Region: ACT_AKii-LysC-BS-like_1; cd04913
192222002717	putative allosteric regulatory site; other site
192222002718	ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains; Region: ACT_AKii-LysC-BS-like_2; cd04936
192222002719	HMMPfam hit to PF00696, Amino acid kinase family,score 3.7e-77
192222002720	PS00324 Aspartokinase signature
192222002721	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222002722	HMMPfam hit to PF01842, ACT domain, score 7.1e-09
192222002723	HMMPfam hit to PF01842, ACT domain, score 2.5e-08
192222002724	DNA replication regulator; Region: HobA; pfam12163
192222002725	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222002726	DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and...; Region: DHPS; cd00739
192222002727	dihydropteroate synthase; Region: DHPS; TIGR01496
192222002728	substrate binding pocket [chemical binding]; other site
192222002729	dimer interface [polypeptide binding]; other site
192222002730	inhibitor binding site; inhibition site
192222002731	HMMPfam hit to PF00809, Pterin binding enzyme,score 1.2e-79
192222002732	NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956
192222002733	NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction...; Region: LIGANc; cd00114
192222002734	nucleotide binding pocket [chemical binding]; other site
192222002735	K-X-D-G motif; other site
192222002736	catalytic site [active]
192222002737	NAD-dependent DNA ligase OB-fold domain; Region: DNA_ligase_OB; pfam03120
192222002738	Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo...; Region: BRCT; cd00027
192222002739	Dimer interface [polypeptide binding]; other site
192222002740	BRCT sequence motif; other site
192222002741	HMMPfam hit to PF01653, NAD-dependent DNA ligase adenylation, score 3.7e-121
192222002742	HMMPfam hit to PF03120, NAD-dependent DNA ligase OB-fold doma, score 3.9e-41
192222002743	PS01056 NAD-dependent DNA ligase signature 2
192222002744	HMMPfam hit to PF00533, BRCA1 C Terminus (BRCT) domain, score 1e-15
192222002745	8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24, 28-50, 74-96, 101-123,135-157, 182-204, 211-233 and 237-255
192222002746	Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]; Region: COG1189
192222002747	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222002748	HMMPfam hit to PF01479, S4 domain, score 0.013
192222002749	HMMPfam hit to PF01728, FtsJ-like methyltransferase, score 3e-06
192222002750	bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed; Region: PRK05627
192222002751	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222002752	active site
192222002753	nucleotide binding site [chemical binding]; other site
192222002754	HIGH motif; other site
192222002755	KMSKS motif; other site
192222002756	Riboflavin kinase; Region: Flavokinase; cl03312
192222002757	HMMPfam hit to PF06574, Riboflavin kinase (Flavokinase), score 1.5e-10
192222002758	HMMPfam hit to PF01687, Riboflavin kinase / FAD synthetase, score 1.2e-24
192222002759	Methyltransferase domain; Region: Methyltransf_31; pfam13847
192222002760	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222002761	S-adenosylmethionine binding site [chemical binding]; other site
192222002762	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002763	Predicted membrane protein [Function unknown]; Region: COG2860
192222002764	UPF0126 domain; Region: UPF0126; pfam03458
192222002765	UPF0126 domain; Region: UPF0126; pfam03458
192222002766	HMMPfam hit to PF03458, UPF0126 domain, score 2.4e-34
192222002767	HMMPfam hit to PF03458, UPF0126 domain, score 6.7e-38
192222002768	DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases.  They exists as monomers and homodimers; Region: NUC; cl00089
192222002769	active site
192222002770	substrate binding site [chemical binding]; other site
192222002771	Mg2+ binding site [ion binding]; other site
192222002772	HMMPfam hit to PF01223, DNA/RNA non-specific endonuclease, score 5.7e-21
192222002773	Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]; Region: Nth; COG0177
192222002774	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
192222002775	minor groove reading motif; other site
192222002776	helix-hairpin-helix signature motif; other site
192222002777	substrate binding pocket [chemical binding]; other site
192222002778	active site
192222002779	Iron-sulfur binding domain of endonuclease III; Region: EndIII_4Fe-2S; cl15304
192222002780	PS00764 Endonuclease III iron-sulfur binding region signature
192222002781	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 9.8e-20
192222002782	peptidylprolyl isomerase; Reviewed; Region: prsA; PRK03002
192222002783	PPIC-type PPIASE domain; Region: Rotamase; cl08278
192222002784	1 probable transmembrane helix predicted for Cj0596 by TMHMM2.0 at aa 5-27
192222002785	HMMPfam hit to PF00639, PPIC-type PPIASE domain,score 2.7e-30
192222002786	PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature
192222002787	fructose-bisphosphate aldolase; Provisional; Region: PRK09197
192222002788	Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is...; Region: FBP_aldolase_IIA; cd00946
192222002789	active site
192222002790	intersubunit interface [polypeptide binding]; other site
192222002791	zinc binding site [ion binding]; other site
192222002792	Na+ binding site [ion binding]; other site
192222002793	HMMPfam hit to PF01116, Fructose-bisphosphate aldolase class-II, score 9.3e-215
192222002794	PS00602 Fructose-bisphosphate aldolase class-II signature 1
192222002795	PS00806 Fructose-bisphosphate aldolase class-II signature 2
192222002796	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
192222002797	Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]; Region: COG4372
192222002798	Protein of unknown function (DUF2570); Region: DUF2570; pfam10828
192222002799	4 probable transmembrane helices predicted for Cj0598 by TMHMM2.0 at aa 21-43, 53-70, 129-151 and 173-195
192222002800	hypothetical protein; Validated; Region: PRK09039
192222002801	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
192222002802	ligand binding site [chemical binding]; other site
192222002803	1 probable transmembrane helix predicted for Cj0599 by TMHMM2.0 at aa 13-35
192222002804	HMMPfam hit to PF00691, OmpA family, score 2.1e-05
192222002805	1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]; Region: Acd; COG2515
192222002806	Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342
192222002807	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
192222002808	catalytic residue [active]
192222002809	Sodium:neurotransmitter symporter family; Region: SNF; cl11976
192222002810	HMMPfam hit to PF00209, Sodium:neurotransmitter symporter family, score 1.2e-14
192222002811	PS00610 Sodium:neurotransmitter symporter family signature 1
192222002812	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2258
192222002813	MOSC domain; Region: MOSC; pfam03473
192222002814	HMMPfam hit to PF03475, 3-alpha domain, score 2.7e-17
192222002815	HMMPfam hit to PF03473, MOSC domain, score 2.2e-44
192222002816	Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]; Region: COG4232
192222002817	Disulphide bond corrector protein DsbC; Region: DsbC; cl15830
192222002818	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
192222002819	DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD...; Region: DsbDgamma; cd02953
192222002820	DsbD alpha interface [polypeptide binding]; other site
192222002821	catalytic residues [active]
192222002822	HMMPfam hit to PF02683, Cytochrome C biogenesis protein transmembran, score 1.2e-07
192222002823	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222002824	active site
192222002825	HMMPfam hit to PF03976, Domain of unknown function (DUF344), score 3.4e-171
192222002826	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
192222002827	M20 Peptidase Aminoacylase 1 family; Region: M20_Acy1; cd03886
192222002828	metal binding site [ion binding]; metal-binding site
192222002829	dimer interface [polypeptide binding]; other site
192222002830	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 1e-43
192222002831	PS00070 Aldehyde dehydrogenases cysteine active site
192222002832	macrolide transporter subunit MacA; Provisional; Region: PRK11578
192222002833	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222002834	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222002835	1 probable transmembrane helix predicted for Cj0606 by TMHMM2.0 at aa 5-24
192222002836	HMMPfam hit to PF00529, HlyD family secretion protein, score 0.00033
192222002837	This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255
192222002838	macrolide transporter ATP-binding /permease protein; Provisional; Region: PRK10535
192222002839	Walker A/P-loop; other site
192222002840	ATP binding site [chemical binding]; other site
192222002841	Q-loop/lid; other site
192222002842	ABC transporter signature motif; other site
192222002843	Walker B; other site
192222002844	D-loop; other site
192222002845	H-loop/switch region; other site
192222002846	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
192222002847	FtsX-like permease family; Region: FtsX; cl15850
192222002848	HMMPfam hit to PF00005, ABC transporter, score 3.9e-54
192222002849	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002850	PS00211 ABC transporters family signature
192222002851	4 probable transmembrane helices predicted for Cj0607 by TMHMM2.0 at aa 265-287, 516-538, 567-589 and 602-624
192222002852	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002853	HMMPfam hit to PF02687, Predicted permease, score 2.4e-46
192222002854	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
192222002855	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002856	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.2e-12
192222002857	HMMPfam hit to PF02321, Outer membrane efflux protein, score 7.5e-11
192222002858	PS00217 Sugar transport proteins signature 2
192222002859	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
192222002860	SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known...; Region: SGNH_hydrolase_peri1; cd01825
192222002861	active site
192222002862	oxyanion hole [active]
192222002863	catalytic triad [active]
192222002864	SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely...; Region: SGNH_hydrolase; cl01053
192222002865	active site
192222002866	catalytic triad [active]
192222002867	oxyanion hole [active]
192222002868	HMMPfam hit to PF04311, Protein of unknown function (DUF459), score 1.7e-184
192222002869	1 probable transmembrane helix predicted for Cj0610c by TMHMM2.0 at aa 7-29
192222002870	MBOAT, membrane-bound O-acyltransferase family; Region: MBOAT; cl00738
192222002871	HMMPfam hit to PF03062, MBOAT family, score 4.1e-80
192222002872	nonheme-containing ferritins; Region: Nonheme_Ferritin; cd01055
192222002873	Ferritin-like domain; Region: Ferritin; pfam00210
192222002874	ferroxidase diiron center [ion binding]; other site
192222002875	HMMPfam hit to PF00210, Ferritin-like domain, score 6.7e-50
192222002876	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222002877	phosphate ABC transporter, permease protein PstC; Region: phosphate_pstC; TIGR02138
192222002878	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222002879	dimer interface [polypeptide binding]; other site
192222002880	conserved gate region; other site
192222002881	putative PBP binding loops; other site
192222002882	ABC-ATPase subunit interface; other site
192222002883	6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31, 83-105, 118-140, 155-174,199-221 and 273-295
192222002884	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.6e-16
192222002885	Domain of unknown function (DUF3333); Region: DUF3333; pfam11812
192222002886	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222002887	dimer interface [polypeptide binding]; other site
192222002888	conserved gate region; other site
192222002889	putative PBP binding loops; other site
192222002890	ABC-ATPase subunit interface; other site
192222002891	6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43, 146-168, 188-210, 215-237,263-285 and 331-353
192222002892	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.9e-17
192222002893	phosphate ABC transporter ATP-binding protein; Provisional; Region: PRK14269
192222002894	Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient.  The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes.  The PstS protein...; Region: ABC_PstB_phosphate_transporter; cd03260
192222002895	Walker A/P-loop; other site
192222002896	ATP binding site [chemical binding]; other site
192222002897	Q-loop/lid; other site
192222002898	ABC transporter signature motif; other site
192222002899	Walker B; other site
192222002900	D-loop; other site
192222002901	H-loop/switch region; other site
192222002902	HMMPfam hit to PF00005, ABC transporter, score 3.2e-51
192222002903	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002904	PS00211 ABC transporters family signature
192222002905	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222002906	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222002907	Na+-driven multidrug efflux pump [Defense mechanisms]; Region: NorM; COG0534
192222002908	MatE; Region: MatE; cl10513
192222002909	MatE; Region: MatE; cl10513
192222002910	12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35, 50-69, 89-111, 126-148,155-177, 187-209, 229-251, 266-288, 309-328, 343-365,377-399 and 403-422
192222002911	HMMPfam hit to PF01554, MatE, score 3.7e-19
192222002912	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002913	Protein of unknown function DUF45; Region: DUF45; cl00636
192222002914	HMMPfam hit to PF01863, Protein of unknown function DUF45, score 1.1e-18
192222002915	Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]; Region: HypF; COG0068
192222002916	Acylphosphatase; Region: Acylphosphatase; cl00551
192222002917	HypF finger; Region: zf-HYPF; pfam07503
192222002918	HypF finger; Region: zf-HYPF; pfam07503
192222002919	Telomere recombination; Region: Sua5_yciO_yrdC; cl00305
192222002920	HMMPfam hit to PF00708, Acylphosphatase, score 2.2e-07
192222002921	PS00150 Acylphosphatase signature 1
192222002922	HMMPfam hit to PF07503, HypF finger, score 2e-16
192222002923	HMMPfam hit to PF07503, HypF finger, score 3.2e-16
192222002924	HMMPfam hit to PF01300, yrdC domain, score 6.5e-52
192222002925	HMMPfam hit to PF00814, Glycoprotease family, score 2.3e-18
192222002926	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222002927	PS00028 Zinc finger, C2H2 type, domain
192222002928	HMMPfam hit to PF02492, CobW/HypB/UreG,nucleotide-binding domain, score 4e-67
192222002929	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002930	HupF/HypC family; Region: HupF_HypC; cl00394
192222002931	HMMPfam hit to PF01455, HupF/HypC family, score 2e-26
192222002932	Hydrogenase formation hypA family; Region: HypD; cl12072
192222002933	Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]; Region: HypD; COG0409
192222002934	HMMPfam hit to PF01924, Hydrogenase formation hypA family, score 8.6e-204
192222002935	HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis.  HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the...; Region: HypE; cd02197
192222002936	dimerization interface [polypeptide binding]; other site
192222002937	hydrogenase expression/formation protein HypE; Region: hypE; TIGR02124
192222002938	ATP binding site [chemical binding]; other site
192222002939	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 7.3e-21
192222002940	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 3.7e-36
192222002941	Hydrogenase expression/synthesis hypA family; Region: HypA; pfam01155
192222002942	hydrogenase nickel incorporation protein; Provisional; Region: hypA; cl00418
192222002943	HMMPfam hit to PF01155, Hydrogenase expression/synthesis hypA family, score 3.3e-50
192222002944	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl01155
192222002945	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222002946	HMMPfam hit to PF03797, Autotransporter beta-domain, score 5.9e-38
192222002947	DNA polymerase III subunit delta; Validated; Region: PRK08487
192222002948	DNA polymerase III, delta subunit; Region: DNA_pol3_delta; pfam06144
192222002949	HMMPfam hit to PF06144, DNA polymerase III, delta subunit, score 0.0012
192222002950	Exoribonuclease R [Transcription]; Region: VacB; COG0557
192222002951	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222002952	RNB domain; Region: RNB; pfam00773
192222002953	PS01175 Ribonuclease II family signature
192222002954	HMMPfam hit to PF00773, RNB-like protein, score 1.9e-59
192222002955	ketol-acid reductoisomerase; Provisional; Region: PRK05479
192222002956	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222002957	Acetohydroxy acid isomeroreductase, catalytic domain; Region: IlvC; pfam01450
192222002958	HMMPfam hit to PF01450, Acetohydroxy acid isomeroreductase, catalyti, score 2e-84
192222002959	Putative catalytic domain of family 2 polysaccharide deacetylases (DACs) from bacteria; Region: CE4_DAC2; cd10936
192222002960	NodB motif; other site
192222002961	putative active site [active]
192222002962	putative catalytic site [active]
192222002963	Zn binding site [ion binding]; other site
192222002964	1 probable transmembrane helix predicted for Cj0633 by TMHMM2.0 at aa 12-31
192222002965	HMMPfam hit to PF04748, Divergent polysaccharide deacetylase, score 1.4e-112
192222002966	Possible lysine decarboxylase; Region: Lysine_decarbox; cl00695
192222002967	HMMPfam hit to PF02481, SMF family, score 2e-53
192222002968	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination.  HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes...; Region: RuvC_resolvase; cl00243
192222002969	HMMPfam hit to PF03652, Uncharacterised protein family (UPF0081), score 1e-52
192222002970	NOL1/NOP2/sun family; Region: Nol1_Nop2_Fmu; pfam01189
192222002971	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222002972	HMMPfam hit to PF01189, NOL1/NOP2/sun family, score 2.4e-30
192222002973	Peptide methionine sulfoxide reductase; Region: PMSR; cl00366
192222002974	HMMPfam hit to PF01625, Peptide methionine sulfoxide reductase, score 2.4e-66
192222002975	Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers; Region: pyrophosphatase; cd00412
192222002976	dimer interface [polypeptide binding]; other site
192222002977	substrate binding site [chemical binding]; other site
192222002978	metal binding sites [ion binding]; metal-binding site
192222002979	HMMPfam hit to PF00719, Inorganic pyrophosphatase,score 2.4e-53
192222002980	PS00387 Inorganic pyrophosphatase signature
192222002981	adenylate kinase; Reviewed; Region: adk; PRK00279
192222002982	Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for...; Region: ADK; cd01428
192222002983	AMP-binding site [chemical binding]; other site
192222002984	ATP-AMP (Ap5A)-binding site [chemical binding]; other site
192222002985	HMMPfam hit to PF00406, Adenylate kinase, score 2.4e-40
192222002986	PS00113 Adenylate kinase signature
192222002987	PS00017 ATP/GTP-binding site motif A (P-loop)
192222002988	aspartyl-tRNA synthetase; Validated; Region: aspS; PRK00476
192222002989	EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND)...; Region: EcAspRS_like_N; cd04317
192222002990	dimer interface [polypeptide binding]; other site
192222002991	anticodon binding site; other site
192222002992	Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the...; Region: AspRS_core; cd00777
192222002993	homodimer interface [polypeptide binding]; other site
192222002994	motif 1; other site
192222002995	active site
192222002996	motif 2; other site
192222002997	GAD domain; Region: GAD; pfam02938
192222002998	Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA.   PheRS is an exception in that it attaches...; Region: class_II_aaRS-like_core; cl00268
192222002999	active site
192222003000	motif 3; other site
192222003001	HMMPfam hit to PF00152, tRNA synthetases class II (D, K and N), score 1.8e-24
192222003002	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222003003	HMMPfam hit to PF02938, GAD domain, score 1.9e-31
192222003004	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222003005	HMMPfam hit to PF01336, OB-fold nucleic acid binding domain, score 3.7e-26
192222003006	Diacylglycerol kinase catalytic domain; Region: DAGK_cat; cl01255
192222003007	inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03708
192222003008	HMMPfam hit to PF01513, ATP-NAD kinase, score 4.4e-54
192222003009	ATPase involved in DNA repair [DNA replication, recombination, and repair]; Region: RecN; COG0497
192222003010	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003011	Walker A/P-loop; other site
192222003012	ATP binding site [chemical binding]; other site
192222003013	Q-loop/lid; other site
192222003014	RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and...; Region: ABC_RecN; cd03241
192222003015	ABC transporter signature motif; other site
192222003016	Walker B; other site
192222003017	D-loop; other site
192222003018	H-loop/switch region; other site
192222003019	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003020	Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]; Region: PleD; COG3706
192222003021	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222003022	active site
192222003023	phosphorylation site [posttranslational modification]
192222003024	intermolecular recognition site; other site
192222003025	dimerization interface [polypeptide binding]; other site
192222003026	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222003027	active site
192222003028	phosphorylation site [posttranslational modification]
192222003029	intermolecular recognition site; other site
192222003030	dimerization interface [polypeptide binding]; other site
192222003031	Diguanylate-cyclase (DGC) or GGDEF domain; Region: GGDEF; cd01949
192222003032	metal binding site [ion binding]; metal-binding site
192222003033	active site
192222003034	I-site; other site
192222003035	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.7e-05
192222003036	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.3e-07
192222003037	HMMPfam hit to PF00990, GGDEF domain, score 1.3e-23
192222003038	TatD like proteins;  E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity; Region: TatD_DNAse; cd01310
192222003039	active site
192222003040	HMMPfam hit to PF01026, TatD related DNase, score 1.2e-106
192222003041	PS01137 Uncharacterized protein family UPF0006 signature 1
192222003042	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222003043	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL).  LTs catalyze...; Region: LT_GEWL; cd00254
192222003044	N-acetyl-D-glucosamine binding site [chemical binding]; other site
192222003045	catalytic residue [active]
192222003046	autolysin; Reviewed; Region: PRK06347
192222003047	Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function; Region: LysM; cd00118
192222003048	putative peptidoglycan binding site; other site
192222003049	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 1.5e-28
192222003050	HMMPfam hit to PF01476, LysM domain, score 1.7e-17
192222003051	Lipoproteins [Cell envelope biogenesis, outer membrane]; Region: RlpA; COG0797
192222003052	Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Region: DPBB_1; cl04011
192222003053	Sporulation related domain; Region: SPOR; cl10051
192222003054	1 probable transmembrane helix predicted for Cj0646 by TMHMM2.0 at aa 7-29
192222003055	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003056	HMMPfam hit to PF03330, Rare lipoprotein A (RlpA)-like double-psi be, score 1.9e-44
192222003057	Low specificity phosphatase (HAD superfamily) [General function prediction only]; Region: COG1778
192222003058	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222003059	active site
192222003060	motif I; other site
192222003061	motif II; other site
192222003062	1 probable transmembrane helix predicted for Cj0648 by TMHMM2.0 at aa 5-22
192222003063	OstA-like protein; Region: OstA; cl00844
192222003064	HMMPfam hit to PF03968, OstA-like protein, score 5.1e-61
192222003065	Predicted GTPase [General function prediction only]; Region: COG0218
192222003066	YihA (EngB) GTPase family; Region: YihA_EngB; cd01876
192222003067	G1 box; other site
192222003068	GTP/Mg2+ binding site [chemical binding]; other site
192222003069	Switch I region; other site
192222003070	G2 box; other site
192222003071	G3 box; other site
192222003072	Switch II region; other site
192222003073	G4 box; other site
192222003074	G5 box; other site
192222003075	HMMPfam hit to PF01926, GTPase of unknown function,score 2.6e-26
192222003076	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003077	5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29, 33-52, 65-96, 111-133 and 140-159
192222003078	penicillin-binding protein 2; Region: pbp2_mrdA; TIGR03423
192222003079	Penicillin-binding Protein dimerisation domain; Region: PBP_dimer; pfam03717
192222003080	Penicillin binding protein transpeptidase domain; Region: Transpeptidase; cl01009
192222003081	1 probable transmembrane helix predicted for Cj0652 by TMHMM2.0 at aa 5-24
192222003082	HMMPfam hit to PF03717, Penicillin-binding Protein dimerisatio, score 1.9e-53
192222003083	HMMPfam hit to PF00905, Penicillin binding protein transpeptid, score 1.5e-64
192222003084	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
192222003085	Xaa-Pro aminopeptidase [Amino acid transport and metabolism]; Region: PepP; COG0006
192222003086	Creatinase/Prolidase N-terminal domain; Region: Creatinase_N; pfam01321
192222003087	X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline; Region: APP; cd01085
192222003088	active site
192222003089	HMMPfam hit to PF00557, metallopeptidase family M24, score 3.5e-09
192222003090	Original (2000) note: Cj0654c, probable transmembrane transport protein pseudogene, len: 1433 bp; similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2; Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also, twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus, added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other
192222003091	HMMPfam hit to PF00854, POT family, score 8e-11
192222003092	1 probable transmembrane helix predicted for Cj0659c by TMHMM2.0 at aa 17-39
192222003093	1 probable transmembrane helix predicted for Cj0660c by TMHMM2.0 at aa 207-229
192222003094	GTPase Era; Reviewed; Region: era; PRK00089
192222003095	E. coli Ras-like protein (Era) is a multifunctional GTPase; Region: Era; cd04163
192222003096	G1 box; other site
192222003097	GTP/Mg2+ binding site [chemical binding]; other site
192222003098	Switch I region; other site
192222003099	G2 box; other site
192222003100	Switch II region; other site
192222003101	G3 box; other site
192222003102	G4 box; other site
192222003103	G5 box; other site
192222003104	K homology RNA-binding domain, type I.  KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that...; Region: KH-I; cl00098
192222003105	HMMPfam hit to PF07650, KH domain, score 1.1e-22
192222003106	HMMPfam hit to PF01926, GTPase of unknown function,score 1.5e-31
192222003107	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003108	ATP-dependent protease ATP-binding subunit HslU; Provisional; Region: hslU; PRK05201
192222003109	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222003110	Walker A motif; other site
192222003111	ATP binding site [chemical binding]; other site
192222003112	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003113	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; cl11083
192222003114	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 1.5e-12
192222003115	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 4.8e-44
192222003116	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003117	Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the...; Region: protease_HslV; cd01913
192222003118	active site
192222003119	HslU subunit interaction site [polypeptide binding]; other site
192222003120	HMMPfam hit to PF00227, Proteasome A-type and B-type, score 1.2e-44
192222003121	50S ribosomal protein L9; Reviewed; Region: rplI; PRK00137
192222003122	Ribosomal protein L9, N-terminal domain; Region: Ribosomal_L9_N; pfam01281
192222003123	Ribosomal protein L9, C-terminal domain; Region: Ribosomal_L9_C; pfam03948
192222003124	HMMPfam hit to PF03948, Ribosomal protein L9,C-terminal domai, score 3.7e-20
192222003125	HMMPfam hit to PF01281, Ribosomal protein L9,N-terminal domai, score 2.9e-21
192222003126	PS00651 Ribosomal protein L9 signature
192222003127	Argininosuccinate synthase [Amino acid transport and metabolism]; Region: ArgG; COG0137
192222003128	Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate .  In...; Region: Argininosuccinate_Synthase; cd01999
192222003129	ANP binding site [chemical binding]; other site
192222003130	Substrate Binding Site II [chemical binding]; other site
192222003131	Substrate Binding Site I [chemical binding]; other site
192222003132	HMMPfam hit to PF00764, Arginosuccinate synthase,score 1.7e-193
192222003133	PS00565 Argininosuccinate synthase signature 2
192222003134	PS00564 Argininosuccinate synthase signature 1
192222003135	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940
192222003136	HMMPfam hit to PF01479, S4 domain, score 4.5e-06
192222003137	Uncharacterized P-loop hydrolase UPF0079; Region: UPF0079; cl00520
192222003138	HMMPfam hit to PF02367, Uncharacterised P-loop hydrolase UPF0079, score 1e-18
192222003139	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003140	ABC-type (unclassified) transport system, ATPase component [General function prediction only]; Region: YhbG; COG1137
192222003141	The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in...; Region: ABC_YhbG; cd03218
192222003142	Walker A/P-loop; other site
192222003143	ATP binding site [chemical binding]; other site
192222003144	Q-loop/lid; other site
192222003145	ABC transporter signature motif; other site
192222003146	Walker B; other site
192222003147	D-loop; other site
192222003148	H-loop/switch region; other site
192222003149	HMMPfam hit to PF00005, ABC transporter, score 8.9e-62
192222003150	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003151	RNA polymerase factor sigma-54; Reviewed; Region: PRK05932
192222003152	Sigma-54 factor, Activator interacting domain (AID); Region: Sigma54_AID; pfam00309
192222003153	Sigma-54 factor, core binding domain; Region: Sigma54_CBD; pfam04963
192222003154	Sigma-54, DNA binding domain; Region: Sigma54_DBD; pfam04552
192222003155	HMMPfam hit to PF00309, Sigma-54 factor, Activator interacting do, score 1.3e-15
192222003156	HMMPfam hit to PF04963, Sigma-54 factor, core binding domain, score 3.6e-06
192222003157	HMMPfam hit to PF04552, Sigma-54, DNA binding domain, score 3.7e-83
192222003158	PS00718 Sigma-54 factors family signature 2
192222003159	Anaerobic c4-dicarboxylate membrane transporter; Region: DcuA_DcuB; cl01040
192222003160	12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28, 33-52, 62-84, 105-127,147-169, 182-204, 247-269, 294-316, 331-353, 374-396,406-428 and 449-471
192222003161	HMMPfam hit to PF03605, Anaerobic c4-dicarboxylate membrane transpo, score 4.2e-254
192222003162	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003163	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003164	2 probable transmembrane helices predicted for Cj0672 by TMHMM2.0 at aa 10-32 and 39-58
192222003165	Original (2000) note: Cj0676, kdpA, probable potassium-transporting ATPase A chain pseudogene, len: 1744 bp; highly similar to e.g. ATKA_ECOLI potassium-transporting ATPase A chain (EC 3.6.1.36) (557 aa). No hp match. Note thay kdpB (Cj0677) is intact, while kdpC (Cj0678) is a pseudogene; Updated (2006) note: Pfam domain PF03814 Potassium-transporting ATPase A subunit identified within CDS. Also, ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus,  not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations; PMID:6146979, PMID:15919996
192222003166	HMMPfam hit to PF03814, Potassium-transporting ATPase A subunit, score 4e-243
192222003167	10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23, 60-82, 128-150, 163-185,242-264, 281-300, 377-399, 416-438, 484-506 and 523-545
192222003168	potassium-transporting ATPase subunit B; Provisional; Region: PRK01122
192222003169	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
192222003170	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222003171	7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56, 66-83, 218-240, 250-272,583-601, 611-633 and 646-668
192222003172	HMMPfam hit to PF00122, E1-E2 ATPase, score 4.5e-52
192222003173	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 1.9e-30
192222003174	PS00154 E1-E2 ATPases phosphorylation site
192222003175	PS00018 EF-hand calcium-binding domain
192222003176	Original (2000) note: Cj0678, kdpC, probable potassium-transporting ATPase C chain pseudogene, len: 553 bp; similar to e.g. ATKC_ECOLI potassium-transporting ATPase C chain (EC 3.6.1.36) (190 aa). No Hp match. Note that kdpA (Cj0676) is a pseudogene, but kdpB (Cj0677) is intact; Updated (2006) note: Pfam domain PF02669 K+-transporting ATPase, c chain identified within CDS. Also one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus, not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations; PMID:6146979, PMID:1532388
192222003177	HMMPfam hit to PF02669, K+-transporting ATPase, c chain, score 8.8e-32
192222003178	1 probable transmembrane helix predicted for Cj0678 by TMHMM2.0 at aa 5-24
192222003179	Osmosensitive K+ channel His kinase sensor domain; Region: KdpD; pfam02702
192222003180	USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium...; Region: USP_OKCHK; cd01987
192222003181	Domain of unknown function (DUF4118); Region: DUF4118; pfam13493
192222003182	HMMPfam hit to PF02702, Osmosensitive K+ channel His kinase sensor d, score 1.3e-150
192222003183	5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377, 384-403, 413-427,432-454 and 464-486
192222003184	excinuclease ABC subunit B; Provisional; Region: PRK05298
192222003185	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
192222003186	ATP binding site [chemical binding]; other site
192222003187	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
192222003188	nucleotide binding region [chemical binding]; other site
192222003189	ATP-binding site [chemical binding]; other site
192222003190	Ultra-violet resistance protein B; Region: UvrB; pfam12344
192222003191	HMMPfam hit to PF02151, UvrB/uvrC motif, score 1.2e-11
192222003192	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 7.4e-18
192222003193	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 1.4e-06
192222003194	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003195	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 0.0002
192222003196	1 probable transmembrane helix predicted for Cj0683 by TMHMM2.0 at aa 5-27
192222003197	primosome assembly protein PriA; Validated; Region: PRK05580
192222003198	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
192222003199	ATP binding site [chemical binding]; other site
192222003200	putative Mg++ binding site [ion binding]; other site
192222003201	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003202	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 2e-06
192222003203	HMMPfam hit to PF00270, DEAD/DEAH box helicase,score 9.2e-11
192222003204	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003205	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 2.2e-06
192222003206	Protein of unknown function (DUF2972); Region: DUF2972; pfam11186
192222003207	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222003208	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed; Region: ispG; PRK00366
192222003209	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
192222003210	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated; Region: PRK00694
192222003211	HMMPfam hit to PF04551, GcpE protein, score 7.5e-248
192222003212	flagellar basal body L-ring protein; Reviewed; Region: flgH; PRK12698
192222003213	Flagellar L-ring protein; Region: FlgH; cl00905
192222003214	HMMPfam hit to PF02107, Flagellar L-ring protein,score 2.3e-49
192222003215	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003216	BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]; Region: Pta; COG0857
192222003217	Phosphotransacetylase [Energy production and conversion]; Region: Pta; COG0280
192222003218	Phosphate acetyl/butaryl transferase; Region: PTA_PTB; cl00390
192222003219	HMMPfam hit to PF01515, Phosphate acetyl/butaryl transferase, score 2e-159
192222003220	Acetokinase family; Region: Acetate_kinase; cl01029
192222003221	propionate/acetate kinase; Provisional; Region: PRK12379
192222003222	HMMPfam hit to PF00871, Acetokinase family, score 1.4e-188
192222003223	PS01075 Acetate and butyrate kinases family signature 1
192222003224	PS01076 Acetate and butyrate kinases family signature 2
192222003225	Uncharacterized conserved protein [Function unknown]; Region: COG4748
192222003226	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; cl14958
192222003227	Type II restriction enzyme, methylase subunits [Defense mechanisms]; Region: COG1002
192222003228	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222003229	PS00092 N-6 Adenine-specific DNA methylases signature
192222003230	HMMPfam hit to PF04313, Type I restriction enzyme R protein N termin, score 3.1e-21
192222003231	2 probable transmembrane helices predicted for Cj0691 by TMHMM2.0 at aa 53-75 and 80-102
192222003232	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003233	1 probable transmembrane helix predicted for Cj0692c by TMHMM2.0 at aa 243-265
192222003234	Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]; Region: COG0275
192222003235	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222003236	HMMPfam hit to PF01795, MraW methylase family,score 7.1e-110
192222003237	SurA N-terminal domain; Region: SurA_N_3; cl07813
192222003238	Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]; Region: SurA; COG0760
192222003239	PPIC-type PPIASE domain; Region: Rotamase; cl08278
192222003240	1 probable transmembrane helix predicted for Cj0694 by TMHMM2.0 at aa 12-34
192222003241	cell division protein FtsA; Region: ftsA; TIGR01174
192222003242	Cell division protein FtsA; Region: FtsA; cl11496
192222003243	Cell division protein FtsA; Region: FtsA; cl11496
192222003244	HMMPfam hit to PF02491, Cell division protein FtsA,score 4.3e-31
192222003245	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003246	HMMPfam hit to PF02491, Cell division protein FtsA,score 2.1e-21
192222003247	cell division protein FtsZ; Validated; Region: PRK09330
192222003248	FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at...; Region: FtsZ_type1; cd02201
192222003249	nucleotide binding site [chemical binding]; other site
192222003250	SulA interaction site; other site
192222003251	HMMPfam hit to PF00091, Tubulin/FtsZ family, GTPase domain, score 1.9e-81
192222003252	PS01135 FtsZ protein signature 2
192222003253	HMMPfam hit to PF03953, Tubulin/FtsZ family,C-terminal domain, score 4e-25
192222003254	Flagellar basal body rod protein [Cell motility and secretion]; Region: FlgG; COG4786
192222003255	Flagella basal body rod protein; Region: Flg_bb_rod; cl15793
192222003256	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222003257	HMMPfam hit to PF00460, Flagella basal body rod protein, score 9.9e-09
192222003258	PS00588 Flagella basal body rod proteins signature
192222003259	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 0.0011
192222003260	flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693
192222003261	Flagella basal body rod protein; Region: Flg_bb_rod; cl15793
192222003262	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222003263	HMMPfam hit to PF00460, Flagella basal body rod protein, score 5.6e-13
192222003264	PS00588 Flagella basal body rod proteins signature
192222003265	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 1.2e-19
192222003266	glutamine synthetase, type I; Region: GlnA; TIGR00653
192222003267	Glutamine synthetase, beta-Grasp domain; Region: Gln-synt_N; pfam03951
192222003268	Glutamine synthetase, catalytic domain; Region: Gln-synt_C; pfam00120
192222003269	HMMPfam hit to PF00120, Glutamine synthetase,catalytic domain, score 8.5e-160
192222003270	PS00181 Glutamine synthetase  ATP-binding region signature
192222003271	HMMPfam hit to PF03951, Glutamine synthetase,beta-Grasp domain, score 6e-42
192222003272	PS00180 Glutamine synthetase signature 1
192222003273	recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409
192222003274	Chemotaxis phosphatase, CheZ; Region: CheZ; cl01219
192222003275	Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]; Region: COG0826
192222003276	Peptidase family U32; Region: Peptidase_U32; cl03113
192222003277	HMMPfam hit to PF01136, Peptidase family U32, score 8.5e-117
192222003278	PS01276 Peptidase family U32 signature
192222003279	AIR carboxylase; Region: AIRC; cl00310
192222003280	HMMPfam hit to PF00731, AIR carboxylase, score 1.1e-72
192222003281	Protein of unknown function (DUF3972); Region: DUF3972; pfam13118
192222003282	Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the...; Region: GlyRS_alpha_core; cd00733
192222003283	dimer interface [polypeptide binding]; other site
192222003284	motif 1; other site
192222003285	active site
192222003286	motif 2; other site
192222003287	motif 3; other site
192222003288	HMMPfam hit to PF02091, Glycyl-tRNA synthetase alpha subunit, score 4.8e-203
192222003289	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222003290	Uncharacterized conserved protein [Function unknown]; Region: COG0327
192222003291	NIF3 (NGG1p interacting factor 3); Region: NIF3; cl15371
192222003292	HMMPfam hit to PF01784, NIF3 (NGG1p interacting factor 3), score 3.6e-81
192222003293	Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]; Region: COG1579
192222003294	Putative zinc ribbon domain; Region: DUF164; pfam02591
192222003295	HMMPfam hit to PF02591, Uncharacterized ACR,COG1579, score 8.4e-50
192222003296	3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749
192222003297	3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); Region: Glycos_transf_N; pfam04413
192222003298	2 probable transmembrane helices predicted for Cj0707 by TMHMM2.0 at aa 4-26 and 111-130
192222003299	HMMPfam hit to PF04413,3-Deoxy-D-manno-octulosonic-acid tran, score 7.3e-80
192222003300	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
192222003301	PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and...; Region: PseudoU_synth_RluCD_like; cd02869
192222003302	active site
192222003303	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 1.7e-20
192222003304	PS01129 Rlu family of pseudouridine synthase signature
192222003305	signal recognition particle protein; Provisional; Region: PRK10867
192222003306	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
192222003307	P loop; other site
192222003308	GTP binding site [chemical binding]; other site
192222003309	Signal peptide binding domain; Region: SRP_SPB; pfam02978
192222003310	HMMPfam hit to PF02881, SRP54-type protein, helical bundle domain, score 2.4e-08
192222003311	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 9.5e-103
192222003312	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003313	PS00300 SRP54-type proteins GTP-binding domain signature
192222003314	HMMPfam hit to PF02978, Signal peptide binding domain, score 4.4e-45
192222003315	Ribosomal protein S16; Region: Ribosomal_S16; cl00368
192222003316	PS00732 Ribosomal protein S16 signature
192222003317	HMMPfam hit to PF00886, Ribosomal protein S16,score 5.6e-33
192222003318	Predicted RNA-binding protein (contains KH domain) [General function prediction only]; Region: COG1837
192222003319	K homology RNA-binding domain, type I.  KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that...; Region: KH-I; cl00098
192222003320	16S rRNA processing protein RimM; Region: 16S_RimM; TIGR02273
192222003321	RimM N-terminal domain; Region: RimM; pfam01782
192222003322	Photosynthetic reaction center (RC) complex, subunit H;  RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce...; Region: PRCH; cl09959
192222003323	HMMPfam hit to PF01782, RimM N-terminal domain,score 2.2e-20
192222003324	HMMPfam hit to PF05239, PRC-barrel domain, score 1.2e-15
192222003325	tRNA (Guanine-1)-methyltransferase; Region: tRNA_m1G_MT; cl00407
192222003326	HMMPfam hit to PF01746, tRNA (Guanine-1)-methyltransferase, score 1.3e-82
192222003327	Ribosomal protein L19; Region: Ribosomal_L19; cl00406
192222003328	HMMPfam hit to PF01245, Ribosomal protein L19,score 5.1e-63
192222003329	HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU); Region: TLP_HIUase; cd05822
192222003330	active site
192222003331	homotetramer interface [polypeptide binding]; other site
192222003332	HMMPfam hit to PF00576, Transthyretin precursor (formerly preal, score 7.3e-62
192222003333	PS00768 Transthyretin signature 1
192222003334	PS00769 Transthyretin signature 2
192222003335	Class-II DAHP synthetase family; Region: DAHP_synth_2; cl03230
192222003336	HMMPfam hit to PF01474, Class-II DAHP synthetase family, score 8.4e-246
192222003337	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003338	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
192222003339	ArsC family; Region: ArsC; pfam03960
192222003340	HMMPfam hit to PF03960, ArsC family, score 6.9e-34
192222003341	DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673
192222003342	Bacterial DNA polymerase III alpha subunit; Region: DNA_pol3_alpha; pfam07733
192222003343	DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains...; Region: DnaE_OBF; cd04485
192222003344	generic binding surface I; other site
192222003345	generic binding surface II; other site
192222003346	HMMPfam hit to PF02231, PHP domain N-terminal region, score 4.7e-29
192222003347	HMMPfam hit to PF02811, PHP domain C-terminal region, score 1.6e-34
192222003348	HMMPfam hit to PF07733, Bacterial DNA polymerase III alpha sub, score 2.2e-295
192222003349	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
192222003350	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
192222003351	catalytic residue [active]
192222003352	HMMPfam hit to PF01168, Alanine racemase,N-terminal domain, score 2e-05
192222003353	PS01211 Uncharacterized protein family UPF0001 signature
192222003354	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
192222003355	flagellin; Provisional; Region: PRK12804
192222003356	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 6.9e-05
192222003357	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328
192222003358	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222003359	S-adenosylmethionine binding site [chemical binding]; other site
192222003360	PS00092 N-6 Adenine-specific DNA methylases signature
192222003361	Peptidase family M48; Region: Peptidase_M48; cl12018
192222003362	HMMPfam hit to PF01435, Peptidase family M48, score 1.9e-43
192222003363	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
192222003364	MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea; Region: MogA_MoaB; cd00886
192222003365	MPT binding site; other site
192222003366	trimer interface [polypeptide binding]; other site
192222003367	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 6.3e-45
192222003368	magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); Region: corA; TIGR00383
192222003369	magnesium/nickel/cobalt transporter CorA; Provisional; Region: PRK11085; cl00459
192222003370	HMMPfam hit to PF01544, CorA-like Mg2+ transporter protein, score 1.6e-61
192222003371	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222003372	Bacterial extracellular solute-binding protein; Region: SBP_bac_8; pfam13416
192222003373	HMMPfam hit to PF01547, Bacterial extracellular solute-binding prot, score 0.0028
192222003374	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG4222
192222003375	Uncharacterized proteins of the AP superfamily [General function prediction only]; Region: COG1524
192222003376	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
192222003377	6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29, 66-88, 108-130, 145-167,187-209 and 248-270
192222003378	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0008
192222003379	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222003380	dimer interface [polypeptide binding]; other site
192222003381	conserved gate region; other site
192222003382	putative PBP binding loops; other site
192222003383	ABC-ATPase subunit interface; other site
192222003384	7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34, 75-97, 104-126, 131-153,165-187, 192-214 and 235-257
192222003385	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 0.0085
192222003386	ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]; Region: PotA; COG3842
192222003387	ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family...; Region: ABC_Carb_Solutes_like; cd03259
192222003388	Walker A/P-loop; other site
192222003389	ATP binding site [chemical binding]; other site
192222003390	Q-loop/lid; other site
192222003391	ABC transporter signature motif; other site
192222003392	Walker B; other site
192222003393	D-loop; other site
192222003394	H-loop/switch region; other site
192222003395	TOBE domain; Region: TOBE_2; cl01440
192222003396	HMMPfam hit to PF00005, ABC transporter, score 4.1e-70
192222003397	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003398	PS00211 ABC transporters family signature
192222003399	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
192222003400	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222003401	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 0.0017
192222003402	PS00215 Mitochondrial energy transfer proteins signature
192222003403	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
192222003404	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
192222003405	substrate binding pocket [chemical binding]; other site
192222003406	membrane-bound complex binding site; other site
192222003407	hinge residues; other site
192222003408	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 4.4e-67
192222003409	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature
192222003410	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003411	1 probable transmembrane helix predicted for Cj0735 by TMHMM2.0 at aa 19-41
192222003412	Large exoproteins involved in heme utilization or adhesion [Intracellular trafficking and secretion]; Region: FhaB; COG3210
192222003413	haemagglutination activity domain; Region: Haemagg_act; cl05436
192222003414	1 probable transmembrane helix predicted for Cj0737 by TMHMM2.0 at aa 7-29
192222003415	HMMPfam hit to PF05860, haemagglutination activity domain, score 3.3e-11
192222003416	Original (2000) note: Cj0742, probable outer membrane protein pseudogene, len: 1567 bp; similar to parts of Cj0975 (H. inf. hxuB-like). No Hp match; Updated (2006) note: No specific characterisation with acceptable identity scores. Thus,  kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Membranes, lipoproteins and porins
192222003417	Original (2000) note: Cj0752, probable IS element transposase pseudogene, len: 1113 bp; similar to parts of e.g. TR:O06526 (EMBL:U95957) H. pylori transposase homolog B (442 aa). Similar to several Hp genes e.g. HP1095,HP0997, HP0989, HP0438, HP1534. No other C.j. matches; Updated (2006) note: Pfam domains PF01385 Probable transposase and PF07282  transposase DNA-binding domain were both identified within CDS. Further support given to product function. Similarity and characterisation work within Helicobacter pylori has led to  not being added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - IS elements; PMID:9858724, PMID:15019987
192222003418	HMMPfam hit to PF01385, Probable transposase, score 7e-08
192222003419	HMMPfam hit to PF07282,  transposase DNA-binding domai, score 1.1e-33
192222003420	Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]; Region: TonB; COG0810
192222003421	Gram-negative bacterial tonB protein; Region: TonB; cl10048
192222003422	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 4.1e-13
192222003423	1 probable transmembrane helix predicted for Cj0753c by TMHMM2.0 at aa 12-29
192222003424	Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771
192222003425	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
192222003426	N-terminal plug; other site
192222003427	ligand-binding site [chemical binding]; other site
192222003428	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 4.3e-21
192222003429	HMMPfam hit to PF00593, TonB dependent receptor,score 2.4e-27
192222003430	heat-inducible transcription repressor; Provisional; Region: PRK03911
192222003431	Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]; Region: GrpE; COG0576
192222003432	GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding; Region: GrpE; cd00446
192222003433	dimer interface [polypeptide binding]; other site
192222003434	hsp70 (ATPase domain) interactions [polypeptide binding]; other site
192222003435	HMMPfam hit to PF01025, GrpE, score 4.9e-55
192222003436	molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290
192222003437	FGGY family of carbohydrate kinases; Region: FGGY; cl08364
192222003438	HMMPfam hit to PF00012, Hsp70 protein, score 0
192222003439	PS00297 Heat shock hsp70 proteins family signature 1
192222003440	PS00329 Heat shock hsp70 proteins family signature 2
192222003441	PS01036 Heat shock hsp70 proteins family signature 3
192222003442	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
192222003443	Cupin domain; Region: Cupin_2; cl09118
192222003444	aspartate aminotransferase; Provisional; Region: PRK05764
192222003445	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
192222003446	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222003447	homodimer interface [polypeptide binding]; other site
192222003448	catalytic residue [active]
192222003449	HMMPfam hit to PF00155, Aminotransferase class I and II, score 5.3e-50
192222003450	serine O-acetyltransferase; Region: cysE; TIGR01172
192222003451	Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of...; Region: LbH_SAT; cd03354
192222003452	trimer interface [polypeptide binding]; other site
192222003453	active site
192222003454	substrate binding site [chemical binding]; other site
192222003455	CoA binding site [chemical binding]; other site
192222003456	PS00101 Hexapeptide-repeat containing-transferases signature
192222003457	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.31
192222003458	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 17
192222003459	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.077
192222003460	arginine decarboxylase; Provisional; Region: PRK05354
192222003461	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase; Region: PLPDE_III_ADC; cd06830
192222003462	dimer interface [polypeptide binding]; other site
192222003463	active site
192222003464	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
192222003465	catalytic residues [active]
192222003466	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
192222003467	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 2.2e-08
192222003468	HMMPfam hit to PF02784, Pyridoxal-dependent decarboxylase, py, score 1.7e-39
192222003469	PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site
192222003470	histidyl-tRNA synthetase; Reviewed; Region: hisS; PRK00037
192222003471	Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent...; Region: HisRS-like_core; cd00773
192222003472	dimer interface [polypeptide binding]; other site
192222003473	motif 1; other site
192222003474	active site
192222003475	motif 2; other site
192222003476	motif 3; other site
192222003477	HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; Region: HisRS_anticodon; cd00859
192222003478	anticodon binding site; other site
192222003479	HMMPfam hit to PF03129, Anticodon binding domain,score 0.018
192222003480	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222003481	HMMPfam hit to PF00587, tRNA synthetase class II core domain (, score 1.5e-36
192222003482	Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672
192222003483	thymidylate kinase; Validated; Region: tmk; PRK00698
192222003484	TMP-binding site; other site
192222003485	ATP-binding site [chemical binding]; other site
192222003486	HMMPfam hit to PF02223, Thymidylate kinase, score 5.9e-33
192222003487	PS01331 Thymidylate kinase signature
192222003488	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003489	phosphopantetheine adenylyltransferase; Provisional; Region: coaD; PRK00168
192222003490	Phosphopantetheine adenylyltransferase; Region: PPAT; cd02163
192222003491	active site
192222003492	(T/H)XGH motif; other site
192222003493	HMMPfam hit to PF01467, Cytidylyltransferase, score 1.9e-29
192222003494	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional; Region: PRK06029
192222003495	Flavoprotein; Region: Flavoprotein; cl08021
192222003496	HMMPfam hit to PF02441, Flavoprotein, score 2.5e-29
192222003497	flagellar basal body P-ring biosynthesis protein FlgA; Reviewed; Region: flgA; PRK08515
192222003498	SAF domain; Region: SAF; cl00555
192222003499	HMMPfam hit to PF03240, FlgA family, score 8e-05
192222003500	NMT1-like family; Region: NMT1_2; cl15260
192222003501	HMMPfam hit to PF03180, NLPA lipoprotein, score 5.2e-129
192222003502	1 probable transmembrane helix predicted for Cj0770c by TMHMM2.0 at aa 7-29
192222003503	NMT1-like family; Region: NMT1_2; cl15260
192222003504	HMMPfam hit to PF03180, NLPA lipoprotein, score 2.2e-132
192222003505	NMT1-like family; Region: NMT1_2; cl15260
192222003506	HMMPfam hit to PF03180, NLPA lipoprotein, score 1.1e-145
192222003507	PS00430 TonB-dependent receptor proteins signature 1
192222003508	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222003509	ABC-ATPase subunit interface; other site
192222003510	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.9e-15
192222003511	ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]; Region: AbcC; COG1135
192222003512	MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport.  Other members of this system include the MetP permease and  the MetQ substrate binding protein.  ABC...; Region: ABC_MetN_methionine_transporter; cd03258
192222003513	Walker A/P-loop; other site
192222003514	ATP binding site [chemical binding]; other site
192222003515	Q-loop/lid; other site
192222003516	ABC transporter signature motif; other site
192222003517	Walker B; other site
192222003518	D-loop; other site
192222003519	H-loop/switch region; other site
192222003520	NIL domain; Region: NIL; cl09633
192222003521	HMMPfam hit to PF00005, ABC transporter, score 1.8e-69
192222003522	PS00211 ABC transporters family signature
192222003523	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003524	valyl-tRNA synthetase; Reviewed; Region: valS; PRK05729
192222003525	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222003526	active site
192222003527	HIGH motif; other site
192222003528	nucleotide binding site [chemical binding]; other site
192222003529	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
192222003530	catalytic core domain of valyl-tRNA synthetases; Region: ValRS_core; cd00817
192222003531	active site
192222003532	KMSKS motif; other site
192222003533	Anticodon-binding domain of valyl tRNA synthetases; Region: Anticodon_Ia_Val; cd07962
192222003534	tRNA binding surface [nucleotide binding]; other site
192222003535	anticodon binding site; other site
192222003536	Valyl tRNA synthetase tRNA binding arm; Region: Val_tRNA-synt_C; pfam10458
192222003537	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 1.7e-207
192222003538	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222003539	ABC exporter membrane fusion protein, DevB family; Region: heterocyst_DevB; TIGR02971
192222003540	1 probable transmembrane helix predicted for Cj0776c by TMHMM2.0 at aa 5-27
192222003541	Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]; Region: UvrD; COG0210
192222003542	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003543	Family description; Region: UvrD_C_2; cl15862
192222003544	HMMPfam hit to PF00580, UvrD/REP helicase, score 1.6e-90
192222003545	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003546	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222003547	Bacterial extracellular solute-binding protein; Region: SBP_bac_11; pfam13531
192222003548	Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a...; Region: PRX_Atyp2cys; cd03014
192222003549	dimer interface [polypeptide binding]; other site
192222003550	catalytic triad [active]
192222003551	peroxidatic and resolving cysteines [active]
192222003552	HMMPfam hit to PF00578, AhpC/TSA family, score 3.8e-21
192222003553	PS01265 Tpx family signature
192222003554	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003555	nitrate reductase catalytic subunit; Provisional; Region: PRK13532
192222003556	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
192222003557	molybdopterin cofactor binding site; other site
192222003558	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
192222003559	Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol...; Region: MopB_CT_Nitrate-R-NapA-like; cd02791
192222003560	molybdopterin cofactor binding site; other site
192222003561	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 2.3e-23
192222003562	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1
192222003563	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 6.2e-85
192222003564	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 3e-32
192222003565	quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476
192222003566	4Fe-4S binding domain; Region: Fer4; cl02805
192222003567	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
192222003568	1 probable transmembrane helix predicted for Cj0781 by TMHMM2.0 at aa 7-29
192222003569	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 6.2e-06
192222003570	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222003571	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0011
192222003572	quinol dehydrogenase membrane component; Provisional; Region: napH; PRK09477
192222003573	4Fe-4S binding domain; Region: Fer4_5; pfam12801
192222003574	4Fe-4S binding domain; Region: Fer4; cl02805
192222003575	6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32, 52-74, 81-99, 119-141,148-170 and 174-195
192222003576	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.00013
192222003577	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222003578	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0015
192222003579	Nitrate reductase cytochrome c-type subunit (NapB); Region: NapB; cl01153
192222003580	HMMPfam hit to PF03892, Nitrate reductase cytochrome c-type subunit, score 2.5e-103
192222003581	1 probable transmembrane helix predicted for Cj0783 by TMHMM2.0 at aa 7-26
192222003582	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003583	PS00190 Cytochrome c family heme-binding site signature
192222003584	PS00190 Cytochrome c family heme-binding site signature
192222003585	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl02567
192222003586	NapD protein; Region: NapD; cl01163
192222003587	HMMPfam hit to PF03927, NapD protein, score 4.9e-34
192222003588	1 probable transmembrane helix predicted for Cj0786 by TMHMM2.0 at aa 4-22
192222003589	delta endotoxin, N-terminal domain; Region: Endotoxin_N; pfam03945
192222003590	tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]; Region: PcnB; COG0617
192222003591	Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes; Region: NT_ClassII-CCAase; cd05398
192222003592	active site
192222003593	NTP binding site [chemical binding]; other site
192222003594	metal binding triad [ion binding]; metal-binding site
192222003595	Probable RNA and SrmB- binding site of polymerase A; Region: PolyA_pol_RNAbd; pfam12627
192222003596	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003597	HMMPfam hit to PF01743, Poly A polymerase family,score 5.6e-32
192222003598	formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027
192222003599	N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase); Region: ACT_F4HF-DF; cd04875
192222003600	Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Region: FMT_core_Formyl-FH4-Hydrolase_C; cd08648
192222003601	putative active site [active]
192222003602	putative substrate binding site [chemical binding]; other site
192222003603	putative cosubstrate binding site; other site
192222003604	catalytic site [active]
192222003605	HMMPfam hit to PF00551, Formyl transferase, score 4e-55
192222003606	Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]; Region: csdA; COG0520
192222003607	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222003608	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222003609	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
192222003610	catalytic residue [active]
192222003611	PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site
192222003612	PS00455  AMP-binding domain signature
192222003613	Archaea bacterial proteins of unknown function; Region: DUF234; pfam03008
192222003614	HMMPfam hit to PF03008, Archaea bacterial proteins of unknown functi, score 1.6e-05
192222003615	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
192222003616	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
192222003617	dimer interface [polypeptide binding]; other site
192222003618	phosphorylation site [posttranslational modification]
192222003619	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222003620	ATP binding site [chemical binding]; other site
192222003621	Mg2+ binding site [ion binding]; other site
192222003622	G-X-G motif; other site
192222003623	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 5.3e-09
192222003624	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.1e-21
192222003625	UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]; Region: MurF; COG0770
192222003626	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
192222003627	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 0.0036
192222003628	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 3.5e-15
192222003629	Alpha/beta hydrolase family; Region: Abhydrolase_6; pfam12697
192222003630	HMMPfam hit to PF00561, alpha/beta hydrolase fold,score 0.0025
192222003631	Antitoxin Phd_YefM, type II toxin-antitoxin system; Region: PhdYeFM_antitox; cl09153
192222003632	D-alanyl-alanine synthetase A; Reviewed; Region: ddl; PRK01966
192222003633	D-ala D-ala ligase N-terminus; Region: Dala_Dala_lig_N; pfam01820
192222003634	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222003635	HMMPfam hit to PF07478, D-ala D-ala ligase C-terminus, score 3.3e-23
192222003636	PS00844 D-alanine--D-alanine ligase signature 2
192222003637	PS00843 D-alanine--D-alanine ligase signature 1
192222003638	Holliday junction DNA helicase RuvA; Provisional; Region: ruvA; PRK14601
192222003639	RuvA N terminal domain; Region: RuvA_N; pfam01330
192222003640	Ribosomal protein S13/S18; Region: Ribosomal_S13; cl00331
192222003641	RuvA, C-terminal domain; Region: RuvA_C; pfam07499
192222003642	HMMPfam hit to PF07499, RuvA, C-terminal domain,score 7.9e-06
192222003643	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 0.13
192222003644	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 0.66
192222003645	HMMPfam hit to PF01330, RuvA N terminal domain,score 1.7e-20
192222003646	1 probable transmembrane helix predicted for Cj0799c by TMHMM2.0 at aa 15-37
192222003647	Protein of unknown function (DUF342); Region: DUF342; pfam03961
192222003648	PS00389 ATP synthase delta (OSCP) subunit signature
192222003649	integral membrane protein MviN; Region: mviN; TIGR01695
192222003650	11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24, 28-47, 79-101, 123-145,152-171, 181-203, 310-332, 347-369, 382-404, 408-430 and 442-464
192222003651	HMMPfam hit to PF03023, MviN-like protein, score 1.6e-84
192222003652	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222003653	cysteinyl-tRNA synthetase; Validated; Region: cysS; PRK00260
192222003654	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
192222003655	active site
192222003656	HIGH motif; other site
192222003657	catalytic core domain of cysteinyl tRNA synthetase; Region: CysRS_core; cd00672
192222003658	KMSKS motif; other site
192222003659	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
192222003660	tRNA binding surface [nucleotide binding]; other site
192222003661	anticodon binding site; other site
192222003662	HMMPfam hit to PF01406, tRNA synthetases class I (C) catalytic d, score 5.6e-134
192222003663	ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; Region: MdlB; COG1132
192222003664	ABC transporter transmembrane region; Region: ABC_membrane; cl00549
192222003665	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003666	Walker A/P-loop; other site
192222003667	ATP binding site [chemical binding]; other site
192222003668	Q-loop/lid; other site
192222003669	ABC transporter signature motif; other site
192222003670	Walker B; other site
192222003671	D-loop; other site
192222003672	H-loop/switch region; other site
192222003673	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 8.8e-42
192222003674	4 probable transmembrane helices predicted for Cj0803 by TMHMM2.0 at aa 25-47, 60-82, 165-184 and 272-294
192222003675	HMMPfam hit to PF00005, ABC transporter, score 4.9e-51
192222003676	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003677	PS00211 ABC transporters family signature
192222003678	Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires...; Region: DHOD_2_like; cd04738
192222003679	quinone interaction residues [chemical binding]; other site
192222003680	Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]; Region: PyrD; COG0167
192222003681	active site
192222003682	catalytic residues [active]
192222003683	FMN binding site [chemical binding]; other site
192222003684	substrate binding site [chemical binding]; other site
192222003685	HMMPfam hit to PF01180, Dihydroorotate dehydrogenase, score 6.1e-84
192222003686	PS00911 Dihydroorotate dehydrogenase signature 1
192222003687	PS00912 Dihydroorotate dehydrogenase signature 2
192222003688	Predicted Zn-dependent peptidases [General function prediction only]; Region: PqqL; COG0612
192222003689	Insulinase (Peptidase family M16); Region: Peptidase_M16; pfam00675
192222003690	Peptidase M16 inactive domain; Region: Peptidase_M16_C; pfam05193
192222003691	HMMPfam hit to PF00675, Insulinase (Peptidase family M16), score 1.2e-15
192222003692	PS00143 Insulinase family, zinc-binding region signature
192222003693	HMMPfam hit to PF05193, Peptidase M16 inactive domain, score 4.8e-42
192222003694	dihydrodipicolinate synthase; Region: dapA; TIGR00674
192222003695	Dihydrodipicolinate synthase (DHDPS); Region: DHDPS; cd00950
192222003696	dimer interface [polypeptide binding]; other site
192222003697	active site
192222003698	catalytic residue [active]
192222003699	HMMPfam hit to PF00701, Dihydrodipicolinate synthetase family, score 2e-106
192222003700	PS00665 Dihydrodipicolinate synthetase signature 1
192222003701	PS00666 Dihydrodipicolinate synthetase signature 2
192222003702	7-alpha-hydroxysteroid dehydrogenase; Provisional; Region: PRK08416
192222003703	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222003704	NAD(P) binding site [chemical binding]; other site
192222003705	active site
192222003706	HMMPfam hit to PF00106, short chain dehydrogenase,score 1e-43
192222003707	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
192222003708	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 3.6e-34
192222003709	NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD...; Region: NAD_synthase; cd00553
192222003710	NAD synthase; Region: NAD_synthase; pfam02540
192222003711	homodimer interface [polypeptide binding]; other site
192222003712	NAD binding pocket [chemical binding]; other site
192222003713	ATP binding pocket [chemical binding]; other site
192222003714	Mg binding site [ion binding]; other site
192222003715	active-site loop [active]
192222003716	HMMPfam hit to PF02540, NAD synthase, score 7.9e-62
192222003717	Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]; Region: LpxK; COG1663
192222003718	Tetraacyldisaccharide-1-P 4'-kinase; Region: LpxK; cl03652
192222003719	HMMPfam hit to PF02606, Tetraacyldisaccharide-1-P 4'-kinase, score 1e-24
192222003720	1 probable transmembrane helix predicted for Cj0811 by TMHMM2.0 at aa 24-46
192222003721	Threonine synthase [Amino acid transport and metabolism]; Region: ThrC; COG0498
192222003722	Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria; Region: Thr-synth_2; cd01560
192222003723	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222003724	catalytic residue [active]
192222003725	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 4e-08
192222003726	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site
192222003727	CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide; Region: CMP-KDO-Synthetase; cd02517
192222003728	Ligand binding site; other site
192222003729	oligomer interface; other site
192222003730	HMMPfam hit to PF02348, Cytidylyltransferase, score 1.9e-54
192222003731	Bacterial extracellular solute-binding proteins, family 3; Region: SBP_bac_3; pfam00497
192222003732	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
192222003733	substrate binding pocket [chemical binding]; other site
192222003734	membrane-bound complex binding site; other site
192222003735	hinge residues; other site
192222003736	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 1.3e-79
192222003737	1 probable transmembrane helix predicted for Cj0818 by TMHMM2.0 at aa 4-21
192222003738	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003739	2 probable transmembrane helices predicted for Cj0819 by TMHMM2.0 at aa 23-42 and 47-69
192222003740	FliP family; Region: FliP; cl00593
192222003741	HMMPfam hit to PF00813, FliP family, score 1.4e-113
192222003742	PS01061 Flagella transport protein fliP family signature 2
192222003743	PS01060 Flagella transport protein fliP family signature 1
192222003744	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional; Region: glmU; PRK14359
192222003745	N-terminal domain of bacterial GlmU; Region: GT2_GlmU_N_bac; cd02540
192222003746	Substrate binding site; other site
192222003747	Mg++ binding site; other site
192222003748	N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two...; Region: LbH_GlmU_C; cd03353
192222003749	active site
192222003750	substrate binding site [chemical binding]; other site
192222003751	CoA binding site [chemical binding]; other site
192222003752	HMMPfam hit to PF00483, Nucleotidyl transferase,score 1.9e-06
192222003753	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 15
192222003754	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 45
192222003755	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 15
192222003756	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (th, score 58
192222003757	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579
192222003758	Flavoprotein; Region: Flavoprotein; cl08021
192222003759	DNA / pantothenate metabolism flavoprotein; Region: DFP; cl04410
192222003760	HMMPfam hit to PF02441, Flavoprotein, score 1.3e-25
192222003761	HMMPfam hit to PF04127, DNA / pantothenate metabolism flavoprote, score 1.2e-16
192222003762	1 probable transmembrane helix predicted for Cj0823 by TMHMM2.0 at aa 145-167
192222003763	Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl...; Region: CIS_IPPS; cl00230
192222003764	Putative undecaprenyl diphosphate synthase; Region: Prenyltransf; pfam01255
192222003765	catalytic residue [active]
192222003766	putative FPP diphosphate  binding site; other site
192222003767	putative FPP binding hydrophobic cleft; other site
192222003768	dimer interface [polypeptide binding]; other site
192222003769	putative IPP diphosphate binding site; other site
192222003770	HMMPfam hit to PF01255,  UDP diphosphate syntha, score 2.6e-72
192222003771	Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]; Region: PulO; COG1989
192222003772	Bacterial Peptidase A24 N-terminal domain; Region: DiS_P_DiS; pfam06750
192222003773	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003774	7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24, 67-89, 93-112, 119-136,151-173, 203-225 and 235-257
192222003775	HMMPfam hit to PF06750, Bacterial Peptidase A24 N-terminal doma, score 1.1e-39
192222003776	HMMPfam hit to PF01478, Type IV leader peptidase family, score 2.3e-17
192222003777	Predicted permeases [General function prediction only]; Region: COG0795; cl12074
192222003778	Predicted permease YjgP/YjgQ family; Region: YjgP_YjgQ; pfam03739
192222003779	HMMPfam hit to PF03739, Predicted permease YjgP/YjgQ family, score 1.5e-77
192222003780	6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35, 55-77, 106-128, 261-283,290-307 and 311-333
192222003781	tRNA pseudouridine synthase A; Validated; Region: truA; PRK00021
192222003782	PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E.  coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1); Region: PseudoU_synth_EcTruA; cd02570
192222003783	dimerization interface 3.5A [polypeptide binding]; other site
192222003784	active site
192222003785	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 1.1e-21
192222003786	HMMPfam hit to PF01416, tRNA pseudouridine synthase, score 2.4e-12
192222003787	threonine dehydratase; Provisional; Region: PRK08526
192222003788	Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly...; Region: Thr-dehyd; cd01562
192222003789	tetramer interface [polypeptide binding]; other site
192222003790	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222003791	catalytic residue [active]
192222003792	C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains; Region: ACT_ThrD-II-like; cd04886
192222003793	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 1e-81
192222003794	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site
192222003795	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222003796	HMMPfam hit to PF02629, CoA binding domain, score 0.00014
192222003797	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3399
192222003798	4 probable transmembrane helices predicted for Cj0830 by TMHMM2.0 at aa 10-32, 45-67, 77-99 and 112-134
192222003799	HMMPfam hit to PF04323, Protein of unknown function (DUF474), score 2.5e-45
192222003800	tRNA (uracil-5-)-methyltransferase; Region: trmA_only; TIGR02143
192222003801	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222003802	HMMPfam hit to PF05958, tRNA (Uracil-5-)-methyltransferase, score 2.6e-240
192222003803	PS01230 RNA methyltransferase trmA family signature 1
192222003804	Na+/H+ antiporter [Energy production and conversion]; Region: NhaC; COG1757
192222003805	HMMPfam hit to PF03553, Na+/H+ antiporter family,score 5.2e-102
192222003806	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222003807	Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]; Region: COG4221
192222003808	NAD(P) binding site [chemical binding]; other site
192222003809	active site
192222003810	HMMPfam hit to PF00106, short chain dehydrogenase,score 7.9e-49
192222003811	PS00061 Short-chain dehydrogenases/reductases family signature
192222003812	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
192222003813	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
192222003814	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
192222003815	HMMPfam hit to PF00023, Ankyrin repeat, score 1.8e-06
192222003816	HMMPfam hit to PF00023, Ankyrin repeat, score 1.9e-07
192222003817	HMMPfam hit to PF00023, Ankyrin repeat, score 7.2
192222003818	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated; Region: PRK09238
192222003819	Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in...; Region: AcnB_Swivel; cd01576
192222003820	substrate binding site [chemical binding]; other site
192222003821	Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle; Region: AcnB; cd01581
192222003822	substrate binding site [chemical binding]; other site
192222003823	ligand binding site [chemical binding]; other site
192222003824	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 2.3e-09
192222003825	PS01244 Aconitase family signature 2
192222003826	PS00450 Aconitase family signature 1
192222003827	HMMPfam hit to PF06434, Aconitate hydratase, score 3.2e-259
192222003828	Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]; Region: Ada; COG0350
192222003829	The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases...; Region: ATase; cd06445
192222003830	DNA binding site [nucleotide binding]
192222003831	active site
192222003832	HMMPfam hit to PF01035, 6-O-methylguanine DNA methyltransferas, score 1.1e-41
192222003833	PS00374 Methylated-DNA--protein-cysteine methyltransferase active site
192222003834	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
192222003835	PS00030 Eukaryotic  RNA-binding region RNP-1 signature
192222003836	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222003837	methionyl-tRNA synthetase; Reviewed; Region: PRK12267
192222003838	catalytic core domain of methioninyl-tRNA synthetases; Region: MetRS_core; cd00814
192222003839	active site
192222003840	HIGH motif; other site
192222003841	KMSKS motif; other site
192222003842	Anticodon-binding domain of methionyl tRNA synthetases; Region: Anticodon_Ia_Met; cd07957
192222003843	tRNA binding surface [nucleotide binding]; other site
192222003844	anticodon binding site; other site
192222003845	tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins.  This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties.  MetRS aminoacylates methionine...; Region: tRNA_bind_EcMetRS_like; cd02800
192222003846	putative tRNA-binding site [nucleotide binding]; other site
192222003847	dimer interface [polypeptide binding]; other site
192222003848	HMMPfam hit to PF01588,  tRNA binding domain, score 3.8e-30
192222003849	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 8.9e-08
192222003850	Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate  into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1; Region: FBPase; cd00354
192222003851	AMP binding site [chemical binding]; other site
192222003852	metal binding site [ion binding]; metal-binding site
192222003853	active site
192222003854	HMMPfam hit to PF00316,Fructose-1-6-bisphosphatase, score 1.1e-52
192222003855	Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa; Region: MobB; cd03116
192222003856	Walker A motif; other site
192222003857	HMMPfam hit to PF03205, Molybdopterin guanine dinucleotide synthesis, score 1.2e-21
192222003858	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003859	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003860	Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell envelope biogenesis, outer membrane]; Region: MltE; COG0741
192222003861	Lytic Transglycosylase (LT)  and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic 'goose-type' lysozymes (GEWL).  LTs catalyze...; Region: LT_GEWL; cd00254
192222003862	N-acetyl-D-glucosamine binding site [chemical binding]; other site
192222003863	catalytic residue [active]
192222003864	HMMPfam hit to PF01464, Transglycosylase SLT domain, score 1.1e-20
192222003865	PS00922 Prokaryotic transglycosylases signature
192222003866	YGGT family; Region: YGGT; cl00508
192222003867	HMMPfam hit to PF02325, YGGT family, score 6.1e-20
192222003868	glutamylglutaminyl-tRNA synthetase; Provisional; Region: PRK12410
192222003869	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222003870	active site
192222003871	HIGH motif; other site
192222003872	nucleotide binding site [chemical binding]; other site
192222003873	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
192222003874	active site
192222003875	KMSKS motif; other site
192222003876	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 1.1e-85
192222003877	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222003878	Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain; Region: MPP_YkuE_C; cd07385
192222003879	Calcineurin-like phosphoesterase; Region: Metallophos; pfam00149
192222003880	putative active site [active]
192222003881	putative metal binding site [ion binding]; other site
192222003882	4 probable transmembrane helices predicted for Cj0846 by TMHMM2.0 at aa 4-22, 34-56, 71-93 and 106-128
192222003883	HMMPfam hit to PF00149, Calcineurin-like phosphoesterase, score 1.2e-12
192222003884	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
192222003885	Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656
192222003886	HMMPfam hit to PF02666, Phosphatidylserine decarboxylase, score 1.8e-45
192222003887	Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]; Region: COG2257; cl15822
192222003888	Ring-infected erythrocyte surface antigen; Provisional; Region: PTZ00341
192222003889	Flagellar hook-length control protein FliK; Region: Flg_hook; cl15269
192222003890	PS00063 Aldo/keto reductase family  active site signature
192222003891	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222003892	putative substrate translocation pore; other site
192222003893	Major Facilitator Superfamily; Region: MFS_1; pfam07690
192222003894	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4.6e-05
192222003895	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3.5e-24
192222003896	PS00216 Sugar transport proteins signature 1
192222003897	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222003898	Putative F0F1-ATPase subunit (ATPase_gene1); Region: ATPase_gene1; cl09754
192222003899	glutamate-1-semialdehyde aminotransferase; Provisional; Region: PRK00062
192222003900	Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase; Region: OAT_like; cd00610
192222003901	inhibitor-cofactor binding pocket; inhibition site
192222003902	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222003903	catalytic residue [active]
192222003904	HMMPfam hit to PF00202, Aminotransferase class-III,score 3.5e-96
192222003905	ubiquitin-activating enzyme E1; Region: Ube1; TIGR01408
192222003906	PS00190 Cytochrome c family heme-binding site signature
192222003907	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional; Region: PRK14166
192222003908	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Region: THF_DHG_CYH; pfam00763
192222003909	NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase; Region: NAD_bind_m-THF_DH_Cyclohyd; cd01080
192222003910	homodimer interface [polypeptide binding]; other site
192222003911	NADP binding site [chemical binding]; other site
192222003912	substrate binding site [chemical binding]; other site
192222003913	HMMPfam hit to PF00763, Tetrahydrofolate dehydrogenase/cyclohyd, score 3.6e-53
192222003914	PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1
192222003915	HMMPfam hit to PF02882, Tetrahydrofolate dehydrogenase/cyclohyd, score 8.6e-103
192222003916	PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2
192222003917	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
192222003918	Catalytic site [active]
192222003919	The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are...; Region: S26_SPase_I; cd06530
192222003920	1 probable transmembrane helix predicted for Cj0856 by TMHMM2.0 at aa 13-35
192222003921	HMMPfam hit to PF00717, Peptidase S24-like, score 6e-18
192222003922	PS00761 Signal peptidases I signature 3
192222003923	Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303
192222003924	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
192222003925	dimer interface [polypeptide binding]; other site
192222003926	putative functional site; other site
192222003927	putative MPT binding site; other site
192222003928	HMMPfam hit to PF03454, MoeA C-terminal region (domain IV), score 0.01
192222003929	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 4.8e-24
192222003930	HMMPfam hit to PF03453, MoeA N-terminal region (domain I and II, score 6.8e-67
192222003931	UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Region: murA; TIGR01072
192222003932	UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine =...; Region: UdpNAET; cd01555
192222003933	hinge; other site
192222003934	active site
192222003935	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 6.4e-129
192222003936	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003937	Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950
192222003938	EamA-like transporter family; Region: EamA; cl01037
192222003939	10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24, 28-50, 63-82, 92-111,118-136, 146-168, 175-197, 212-231, 238-260 and 265-284
192222003940	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.2e-14
192222003941	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 5.2e-17
192222003942	Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase; Region: GATase1_Anthranilate_Synthase; cd01743
192222003943	Glutamine amidotransferase class-I; Region: GATase; pfam00117
192222003944	glutamine binding [chemical binding]; other site
192222003945	catalytic triad [active]
192222003946	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 1.2e-59
192222003947	chorismate binding enzyme; Region: Chorismate_bind; cl10555
192222003948	PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate...; Region: PLPDE_IV; cl00224
192222003949	substrate-cofactor binding pocket; other site
192222003950	homodimer interface [polypeptide binding]; other site
192222003951	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222003952	catalytic residue [active]
192222003953	HMMPfam hit to PF00425, chorismate binding enzyme,score 7.6e-45
192222003954	DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site...; Region: DNA_BRE_C; cl00213
192222003955	tyrosine recombinase XerC; Region: recomb_XerC; TIGR02224
192222003956	active site
192222003957	DNA binding site [nucleotide binding]
192222003958	Int/Topo IB signature motif; other site
192222003959	HMMPfam hit to PF00589, Phage integrase family,score 9.8e-27
192222003960	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
192222003961	Disulfide bond formation protein DsbB; Region: DsbB; cl00649
192222003962	4 probable transmembrane helices predicted for Cj0865 by TMHMM2.0 at aa 25-47, 62-81, 198-220 and 230-247
192222003963	Original (2000) note: Cj0866, ast, arylsulfatase pseudogene, len: 1434 bp; almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa), and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match; Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus,  not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism; PMID:8655516
192222003964	HMMPfam hit to PF05935, Arylsulfotransferase (ASST), score 8.2e-179
192222003965	DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019
192222003966	DSBA-like thioredoxin domain; Region: DSBA; pfam01323
192222003967	catalytic residues [active]
192222003968	hinge region; other site
192222003969	alpha helical domain; other site
192222003970	HMMPfam hit to PF01323, DSBA-like thioredoxin domain, score 1.1e-05
192222003971	Cytochrome c [Energy production and conversion]; Region: COG3258
192222003972	Cytochrome c [Energy production and conversion]; Region: COG3258
192222003973	Cytochrome c; Region: Cytochrom_C; cl11414
192222003974	PS00190 Cytochrome c family heme-binding site signature
192222003975	PS00190 Cytochrome c family heme-binding site signature
192222003976	Predicted phosphohydrolase (DHH superfamily) [General function prediction only]; Region: COG2404
192222003977	DHH family; Region: DHH; pfam01368
192222003978	flagellar biosynthesis protein FlhA; Validated; Region: flhA; cl07980
192222003979	FHIPEP family; Region: FHIPEP; pfam00771
192222003980	HMMPfam hit to PF00771, FHIPEP family, score 4.4e-295
192222003981	Rrf2 family protein; Region: rrf2_super; TIGR00738
192222003982	Helix-turn-helix domains; Region: HTH; cl00088
192222003983	HMMPfam hit to PF02082, Transcriptional regulator,score 3e-31
192222003984	PS01332 Uncharacterized protein family UPF0074 signature
192222003985	Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome; Region: Ribosomal_S15p_S13e; cd00353
192222003986	16S/18S rRNA binding site [nucleotide binding]; other site
192222003987	S13e-L30e interaction site [polypeptide binding]; other site
192222003988	25S rRNA binding site [nucleotide binding]; other site
192222003989	HMMPfam hit to PF00312, Ribosomal protein S15,score 2.4e-33
192222003990	PS00362 Ribosomal protein S15 signature
192222003991	DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; Region: FtsK; COG1674
192222003992	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222003993	Ftsk gamma domain; Region: Ftsk_gamma; cl09645
192222003994	HMMPfam hit to PF01580, FtsK/SpoIIIE family, score 8.5e-94
192222003995	PS00017 ATP/GTP-binding site motif A (P-loop)
192222003996	lagellar hook-associated protein FlgL; Provisional; Region: PRK14692
192222003997	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
192222003998	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
192222003999	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 1.8e-05
192222004000	ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]; Region: Uup; COG0488
192222004001	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222004002	Walker A/P-loop; other site
192222004003	ATP binding site [chemical binding]; other site
192222004004	Q-loop/lid; other site
192222004005	ABC transporter signature motif; other site
192222004006	Walker B; other site
192222004007	D-loop; other site
192222004008	H-loop/switch region; other site
192222004009	ABC transporter; Region: ABC_tran_2; pfam12848
192222004010	ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated...; Region: ABCF_EF-3; cd03221
192222004011	HMMPfam hit to PF00005, ABC transporter, score 2.1e-45
192222004012	PS00211 ABC transporters family signature
192222004013	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004014	HMMPfam hit to PF00005, ABC transporter, score 7.2e-43
192222004015	PS00211 ABC transporters family signature
192222004016	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004017	phosphate regulon sensor kinase PhoR; Region: phoR_proteo; TIGR02966
192222004018	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222004019	ATP binding site [chemical binding]; other site
192222004020	Mg2+ binding site [ion binding]; other site
192222004021	G-X-G motif; other site
192222004022	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.5e-20
192222004023	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 1.3e-11
192222004024	heavy metal response regulator; Region: cztR_silR_copR; TIGR01387
192222004025	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222004026	active site
192222004027	phosphorylation site [posttranslational modification]
192222004028	intermolecular recognition site; other site
192222004029	dimerization interface [polypeptide binding]; other site
192222004030	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
192222004031	DNA binding site [nucleotide binding]
192222004032	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 3.4e-18
192222004033	HMMPfam hit to PF00072, Response regulator receiver domain, score 5.5e-25
192222004034	D-3-phosphoglycerate dehydrogenase; Provisional; Region: PRK13581
192222004035	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004036	C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH); Region: ACT_3PGDH-xct; cd04902
192222004037	putative L-serine binding site [chemical binding]; other site
192222004038	HMMPfam hit to PF01842, ACT domain, score 1.1e-11
192222004039	HMMPfam hit to PF02826, D-isomer specific 2-hydroxyacid dehydrog, score 5.9e-52
192222004040	PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2
192222004041	PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature
192222004042	HMMPfam hit to PF00389, D-isomer specific 2-hydroxyacid dehydrog, score 2.1e-20
192222004043	1 probable transmembrane helix predicted for Cj0892c by TMHMM2.0 at aa 7-26
192222004044	30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299
192222004045	S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec1_hs1; cd05687
192222004046	RNA binding site [nucleotide binding]; other site
192222004047	S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists...; Region: S1_RPS1_repeat_ec2_hs2; cd04465
192222004048	RNA binding site [nucleotide binding]; other site
192222004049	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222004050	RNA binding site [nucleotide binding]; other site
192222004051	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222004052	RNA binding site [nucleotide binding]; other site
192222004053	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222004054	RNA binding site [nucleotide binding]; other site
192222004055	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222004056	RNA binding site [nucleotide binding]; other site
192222004057	HMMPfam hit to PF00575, S1 RNA binding domain,score 4.8e-15
192222004058	HMMPfam hit to PF00575, S1 RNA binding domain,score 3.1e-25
192222004059	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.9e-27
192222004060	HMMPfam hit to PF00575, S1 RNA binding domain,score 5.7e-22
192222004061	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.8e-06
192222004062	(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming); Region: ispH_lytB; TIGR00216
192222004063	LytB protein; Region: LYTB; cl00507
192222004064	HMMPfam hit to PF02401, LytB protein, score 2.5e-160
192222004065	3-phosphoshikimate 1-carboxyvinyltransferase; Region: aroA; TIGR01356
192222004066	EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form...; Region: EPSP_synthase; cd01556
192222004067	hinge; other site
192222004068	active site
192222004069	HMMPfam hit to PF00275, EPSP synthase (3-phosphoshikimate 1-car, score 2.1e-163
192222004070	PS00104 EPSP synthase signature 1
192222004071	phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial; Region: pheT_bact; TIGR00472
192222004072	tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain.  PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate...; Region: tRNA_bind_bactPheRS; cd02796
192222004073	putative tRNA-binding site [nucleotide binding]; other site
192222004074	B3/4 domain; Region: B3_4; cl11458
192222004075	tRNA synthetase B5 domain; Region: B5; cl08394
192222004076	Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA,  PheRS is an...; Region: PheRS_beta_core; cd00769
192222004077	dimer interface [polypeptide binding]; other site
192222004078	motif 1; other site
192222004079	motif 3; other site
192222004080	motif 2; other site
192222004081	Ferredoxin-fold anticodon binding domain; Region: FDX-ACB; cl08386
192222004082	HMMPfam hit to PF03147, Ferredoxin-fold anticodon binding domain, score 4.8e-19
192222004083	HMMPfam hit to PF03484, tRNA synthetase B5 domain,score 2.7e-21
192222004084	HMMPfam hit to PF03483, B3/4 domain, score 5.4e-21
192222004085	HMMPfam hit to PF01588,  tRNA binding domain, score 2.9e-27
192222004086	phenylalanyl-tRNA synthetase subunit alpha; Validated; Region: pheS; PRK00488
192222004087	Aminoacyl tRNA synthetase class II, N-terminal domain; Region: Phe_tRNA-synt_N; pfam02912
192222004088	Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible...; Region: PheRS_alpha_core; cd00496
192222004089	dimer interface [polypeptide binding]; other site
192222004090	motif 1; other site
192222004091	active site
192222004092	motif 2; other site
192222004093	motif 3; other site
192222004094	HMMPfam hit to PF01409, tRNA synthetases class II core domain, score 7.2e-143
192222004095	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222004096	PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1
192222004097	HMMPfam hit to PF02912, Aminoacyl tRNA synthetase class II, N, score 2.5e-23
192222004098	Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a...; Region: PKCI_related; cd01276
192222004099	nucleotide binding site/active site [active]
192222004100	HIT family signature motif; other site
192222004101	catalytic residue [active]
192222004102	HMMPfam hit to PF01230, HIT domain, score 3.2e-40
192222004103	DJ-1 family protein; Region: not_thiJ; TIGR01383
192222004104	Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135
192222004105	conserved cys residue [active]
192222004106	HMMPfam hit to PF01965, DJ-1/PfpI family, score 6.9e-32
192222004107	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222004108	1 probable transmembrane helix predicted for Cj0900c by TMHMM2.0 at aa 10-32
192222004109	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
192222004110	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222004111	dimer interface [polypeptide binding]; other site
192222004112	conserved gate region; other site
192222004113	putative PBP binding loops; other site
192222004114	ABC-ATPase subunit interface; other site
192222004115	4 probable transmembrane helices predicted for Cj0901 by TMHMM2.0 at aa 5-27, 54-76, 100-122 and 217-236
192222004116	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.6e-34
192222004117	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004118	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222004119	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
192222004120	HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP...; Region: ABC_HisP_GlnQ_permeases; cd03262
192222004121	Walker A/P-loop; other site
192222004122	ATP binding site [chemical binding]; other site
192222004123	Q-loop/lid; other site
192222004124	ABC transporter signature motif; other site
192222004125	Walker B; other site
192222004126	D-loop; other site
192222004127	H-loop/switch region; other site
192222004128	HMMPfam hit to PF00005, ABC transporter, score 2.6e-56
192222004129	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004130	PS00211 ABC transporters family signature
192222004131	Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115
192222004132	Sodium:alanine symporter family; Region: Na_Ala_symp; cl00548
192222004133	HMMPfam hit to PF01235, Sodium:alanine symporter family, score 4.2e-138
192222004134	PS00873 Sodium:alanine symporter family signature
192222004135	SpoU rRNA Methylase family; Region: SpoU_methylase; cl00362
192222004136	HMMPfam hit to PF00588, SpoU rRNA Methylase family,score 9.5e-32
192222004137	alanine racemase; Reviewed; Region: alr; PRK00053
192222004138	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261
192222004139	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
192222004140	catalytic residue [active]
192222004141	HMMPfam hit to PF00842, Alanine racemase,C-terminal domain, score 6.9e-39
192222004142	HMMPfam hit to PF01168, Alanine racemase,N-terminal domain, score 6.2e-57
192222004143	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3034
192222004144	L,D-transpeptidase catalytic domain; Region: YkuD; cl15405
192222004145	1 probable transmembrane helix predicted for Cj0908 by TMHMM2.0 at aa 5-23
192222004146	Protein of unknown function (DUF461); Region: DUF461; cl01071
192222004147	HMMPfam hit to PF04314, Protein of unknown function (DUF461), score 1.3e-62
192222004148	1 probable transmembrane helix predicted for Cj0910 by TMHMM2.0 at aa 4-26
192222004149	SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c...; Region: SCO; cd02968
192222004150	Cu(I) binding site [ion binding]; other site
192222004151	1 probable transmembrane helix predicted for Cj0911 by TMHMM2.0 at aa 5-22
192222004152	HMMPfam hit to PF02630, SCO1/SenC, score 2.3e-09
192222004153	Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031
192222004154	CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine; Region: CBS_like; cd01561
192222004155	dimer interface [polypeptide binding]; other site
192222004156	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222004157	catalytic residue [active]
192222004158	HMMPfam hit to PF00291, Pyridoxal-phosphate dependent enzyme, score 2.3e-116
192222004159	PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site
192222004160	PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site
192222004161	Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and...; Region: HU_IHF; cd00591
192222004162	IHF dimer interface [polypeptide binding]; other site
192222004163	IHF - DNA interface [nucleotide binding]; other site
192222004164	HMMPfam hit to PF00216, Bacterial DNA-binding protein, score 1.9e-42
192222004165	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
192222004166	Brown fat-inducible thioesterase (BFIT).  Brain acyl-CoA hydrolase (BACH).  These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis; Region: BFIT_BACH; cd03442
192222004167	HMMPfam hit to PF03061, Thioesterase superfamily,score 7.8e-17
192222004168	Protein of unknown function (DUF466); Region: DUF466; cl01082
192222004169	HMMPfam hit to PF04328, Protein of unknown function (DUF466), score 1.2e-39
192222004170	carbon starvation protein A; Provisional; Region: PRK15015
192222004171	Carbon starvation protein CstA; Region: CstA; pfam02554
192222004172	C-terminal domain on CstA (DUF4161); Region: DUF4161; pfam13722
192222004173	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004174	HMMPfam hit to PF02554, Carbon starvation protein CstA, score 3.2e-248
192222004175	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004176	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004177	ribose-phosphate pyrophosphokinase; Provisional; Region: PRK01259
192222004178	N-terminal domain of ribose phosphate pyrophosphokinase; Region: Pribosyltran_N; pfam13793
192222004179	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222004180	active site
192222004181	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 2.6e-35
192222004182	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222004183	PS00114 Phosphoribosyl pyrophosphate synthetase signature
192222004184	PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2
192222004185	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222004186	dimer interface [polypeptide binding]; other site
192222004187	conserved gate region; other site
192222004188	putative PBP binding loops; other site
192222004189	ABC-ATPase subunit interface; other site
192222004190	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.4e-18
192222004191	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222004192	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004193	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222004194	dimer interface [polypeptide binding]; other site
192222004195	conserved gate region; other site
192222004196	putative PBP binding loops; other site
192222004197	ABC-ATPase subunit interface; other site
192222004198	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 1.2e-24
192222004199	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222004200	bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed; Region: PRK11917
192222004201	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
192222004202	substrate binding pocket [chemical binding]; other site
192222004203	membrane-bound complex binding site; other site
192222004204	hinge residues; other site
192222004205	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 5.3e-41
192222004206	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature
192222004207	ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126
192222004208	HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP...; Region: ABC_HisP_GlnQ_permeases; cd03262
192222004209	Walker A/P-loop; other site
192222004210	ATP binding site [chemical binding]; other site
192222004211	Q-loop/lid; other site
192222004212	ABC transporter signature motif; other site
192222004213	Walker B; other site
192222004214	D-loop; other site
192222004215	H-loop/switch region; other site
192222004216	HMMPfam hit to PF00005, ABC transporter, score 1.3e-64
192222004217	PS00211 ABC transporters family signature
192222004218	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004219	CheR methyltransferase, all-alpha domain; Region: CheR_N; pfam03705
192222004220	Methyltransferase, chemotaxis proteins; Region: MeTrc; smart00138
192222004221	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004222	HMMPfam hit to PF01739, CheR methyltransferase, SAM binding domain, score 5.3e-73
192222004223	HMMPfam hit to PF03705, CheR methyltransferase,all-alpha domain, score 3e-12
192222004224	CheB methylesterase; Region: CheB_methylest; pfam01339
192222004225	HMMPfam hit to PF01339, CheB methylesterase, score 7.1e-18
192222004226	Ribose/Galactose Isomerase; Region: LacAB_rpiB; cl00485
192222004227	HMMPfam hit to PF02502, Ribose/Galactose Isomerase,score 2.4e-46
192222004228	PS00237 G-protein coupled receptors signature
192222004229	PS00190 Cytochrome c family heme-binding site signature
192222004230	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535
192222004231	TSC-22/dip/bun family; Region: TSC22; cl01853
192222004232	1 probable transmembrane helix predicted for Cj0926 by TMHMM2.0 at aa 5-24
192222004233	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]; Region: Apt; COG0503
192222004234	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222004235	active site
192222004236	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 1.6e-41
192222004237	PS00030 Eukaryotic  RNA-binding region RNP-1 signature
192222004238	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222004239	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
192222004240	5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37, 44-66, 86-108, 128-150 and 165-183
192222004241	HMMPfam hit to PF00597, DedA family, score 2.4e-10
192222004242	multifunctional aminopeptidase A; Provisional; Region: PRK00913
192222004243	Cytosol aminopeptidase family, N-terminal and catalytic domains.  Family M17 contains zinc- and manganese-dependent exopeptidases ( EC  3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and...; Region: Peptidase_M17; cd00433
192222004244	interface (dimer of trimers) [polypeptide binding]; other site
192222004245	Substrate-binding/catalytic site; other site
192222004246	Zn-binding sites [ion binding]; other site
192222004247	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature
192222004248	HMMPfam hit to PF00883, Cytosol aminopeptidase family, catalyti, score 5.3e-159
192222004249	PS00631 Cytosol aminopeptidase signature
192222004250	GTP-binding protein YchF; Reviewed; Region: PRK09601
192222004251	YchF GTPase; Region: YchF; cd01900
192222004252	G1 box; other site
192222004253	GTP/Mg2+ binding site [chemical binding]; other site
192222004254	Switch I region; other site
192222004255	G2 box; other site
192222004256	Switch II region; other site
192222004257	G3 box; other site
192222004258	G4 box; other site
192222004259	G5 box; other site
192222004260	TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the...; Region: TGS_YchF_C; cd04867
192222004261	HMMPfam hit to PF01926, GTPase of unknown function,score 2.2e-34
192222004262	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004263	HMMPfam hit to PF06071, Protein of unknown function (DUF933), score 8.1e-60
192222004264	argininosuccinate lyase; Provisional; Region: PRK00855
192222004265	Argininosuccinate lyase (argininosuccinase, ASAL); Region: Argininosuccinate_lyase; cd01359
192222004266	active sites [active]
192222004267	tetramer interface [polypeptide binding]; other site
192222004268	HMMPfam hit to PF00206, Lyase, score 5.1e-88
192222004269	PS00163 Fumarate lyases signature
192222004270	Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and...; Region: PEPCK_ATP; cd00484
192222004271	active site
192222004272	substrate-binding site [chemical binding]; other site
192222004273	metal-binding site [ion binding]
192222004274	ATP binding site [chemical binding]; other site
192222004275	HMMPfam hit to PF01293, Phosphoenolpyruvate carboxykinase, score 1.7e-302
192222004276	PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature
192222004277	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004278	Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]; Region: COG5016
192222004279	Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; Region: DRE_TIM_PC_TC_5S; cd07937
192222004280	active site
192222004281	catalytic residues [active]
192222004282	metal binding site [ion binding]; metal-binding site
192222004283	homodimer binding site [polypeptide binding]; other site
192222004284	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
192222004285	carboxyltransferase (CT) interaction site; other site
192222004286	biotinylation site [posttranslational modification]; other site
192222004287	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 2e-19
192222004288	PS00188 Biotin-requiring enzymes attachment site
192222004289	Sodium:neurotransmitter symporter family; Region: SNF; cl11976
192222004290	HMMPfam hit to PF00209, Sodium:neurotransmitter symporter family, score 3.5e-08
192222004291	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004292	Sodium:neurotransmitter symporter family; Region: SNF; cl11976
192222004293	HMMPfam hit to PF00209, Sodium:neurotransmitter symporter family, score 2.2e-10
192222004294	ATP synthase subunit C; Region: ATP-synt_C; cl00466
192222004295	3 probable transmembrane helices predicted for Cj0936 by TMHMM2.0 at aa 5-24, 39-61 and 82-104
192222004296	HMMPfam hit to PF00137, ATP synthase subunit C,score 3.8e-19
192222004297	PS00605 ATP synthase c subunit signature
192222004298	Membrane transport protein; Region: Mem_trans; cl09117
192222004299	HMMPfam hit to PF03547, Auxin Efflux Carrier, score 1.1e-81
192222004300	10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26, 31-48, 58-80, 93-115,125-147, 168-187, 192-214, 221-243, 253-271 and 278-300
192222004301	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004302	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004303	2-acyl-glycerophospho-ethanolamine acyltransferase; Validated; Region: PRK08633
192222004304	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222004305	putative substrate translocation pore; other site
192222004306	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Region: LPLAT_AGPAT-like; cd07989
192222004307	putative acyl-acceptor binding pocket; other site
192222004308	AMP-binding enzyme; Region: AMP-binding; cl15778
192222004309	HMMPfam hit to PF00501, AMP-binding enzyme, score 1e-63
192222004310	PS00455  AMP-binding domain signature
192222004311	HMMPfam hit to PF01553, Acyltransferase, score 3.3e-22
192222004312	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 3e-18
192222004313	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004314	ABC-type arginine transport system, permease component [Amino acid transport and metabolism]; Region: ArtQ; COG4215
192222004315	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cd06261
192222004316	dimer interface [polypeptide binding]; other site
192222004317	conserved gate region; other site
192222004318	putative PBP binding loops; other site
192222004319	ABC-ATPase subunit interface; other site
192222004320	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 4.8e-27
192222004321	PS00402 Binding-protein-dependent transport systems inner membrane comp. sign
192222004322	ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]; Region: LolE; COG4591
192222004323	FtsX-like permease family; Region: FtsX; cl15850
192222004324	HMMPfam hit to PF02687, Predicted permease, score 7.2e-44
192222004325	preprotein translocase subunit SecA; Reviewed; Region: PRK12904
192222004326	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222004327	SecA preprotein cross-linking domain; Region: SecA_PP_bind; cl03078
192222004328	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
192222004329	nucleotide binding region [chemical binding]; other site
192222004330	ATP-binding site [chemical binding]; other site
192222004331	SEC-C motif; Region: SEC-C; pfam02810
192222004332	HMMPfam hit to PF02810, SEC-C motif, score 3.7e-09
192222004333	HMMPfam hit to PF07516, SecA Wing and Scaffold domain, score 2.8e-73
192222004334	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 0.002
192222004335	HMMPfam hit to PF07517, SecA DEAD-like domain,score 5.8e-153
192222004336	HMMPfam hit to PF01043, SecA preprotein cross-linking domain, score 6.2e-69
192222004337	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065
192222004338	PIF1-like helicase; Region: PIF1; pfam05970
192222004339	ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]; Region: RecD; COG0507
192222004340	Helicase; Region: Herpes_Helicase; pfam02689
192222004341	1 probable transmembrane helix predicted for Cj0945c by TMHMM2.0 at aa 41-63
192222004342	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004343	NLPC_P60 stabilising domain, N term; Region: N_NLPC_P60; pfam12912
192222004344	SH3 domain of the SH3b1 type; Region: SH3_6; pfam12913
192222004345	SH3 domain of SH3b2 type; Region: SH3_7; pfam12914
192222004346	NlpC/P60 family; Region: NLPC_P60; cl11438
192222004347	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004348	N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases); Region: CPA; cd07573
192222004349	Predicted amidohydrolase [General function prediction only]; Region: COG0388
192222004350	putative active site; other site
192222004351	catalytic triad [active]
192222004352	putative dimer interface [polypeptide binding]; other site
192222004353	HMMPfam hit to PF00795, Carbon-nitrogen hydrolase,score 2.2e-59
192222004354	Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]; Region: MMT1; COG0053
192222004355	Cation efflux family; Region: Cation_efflux; cl00316
192222004356	HMMPfam hit to PF01545, Cation efflux family, score 5.9e-101
192222004357	Porphyromonas-type peptidyl-arginine deiminase; Region: PAD_porph; cl01113
192222004358	HMMPfam hit to PF04371, Porphyromonas-type peptidyl-arginine deimin, score 6.5e-166
192222004359	META domain; Region: META; cl01245
192222004360	HMMPfam hit to PF03724, Domain of unknown function (306), score 1.5e-33
192222004361	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004362	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222004363	dimer interface [polypeptide binding]; other site
192222004364	putative CheW interface [polypeptide binding]; other site
192222004365	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 3.3e-07
192222004366	Protein of unknown function (DUF3365); Region: DUF3365; pfam11845
192222004367	PS00190 Cytochrome c family heme-binding site signature
192222004368	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881
192222004369	Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal  ATIC formylase domain that formylates...; Region: IMPCH; cd01421
192222004370	purine monophosphate binding site [chemical binding]; other site
192222004371	dimer interface [polypeptide binding]; other site
192222004372	putative catalytic residues [active]
192222004373	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; cl03362
192222004374	AICARFT/IMPCHase bienzyme; Region: AICARFT_IMPCHas; cl03362
192222004375	HMMPfam hit to PF01808, AICARFT/IMPCHase bienzyme,score 1.3e-86
192222004376	HMMPfam hit to PF02142, MGS-like domain, score 3.8e-53
192222004377	N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins; Region: terB_like_DjlA; cd07316
192222004378	DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]; Region: DjlA; COG1076
192222004379	putative metal binding site [ion binding]; other site
192222004380	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
192222004381	HSP70 interaction site [polypeptide binding]; other site
192222004382	HMMPfam hit to PF00226, DnaJ domain, score 9e-11
192222004383	phosphoribosylformylglycinamidine synthase II; Provisional; Region: PRK01213
192222004384	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat1; cd02203
192222004385	dimerization interface [polypeptide binding]; other site
192222004386	ATP binding site [chemical binding]; other site
192222004387	PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP; Region: PurL_repeat2; cd02204
192222004388	dimerization interface [polypeptide binding]; other site
192222004389	ATP binding site [chemical binding]; other site
192222004390	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 2.5e-09
192222004391	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 6.5e-29
192222004392	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 6.6e-47
192222004393	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 4.9e-39
192222004394	tRNA modification GTPase TrmE; Reviewed; Region: trmE; PRK05291
192222004395	GTP-binding protein TrmE N-terminus; Region: TrmE_N; pfam10396
192222004396	trmE is a tRNA modification GTPase; Region: trmE; cd04164
192222004397	G1 box; other site
192222004398	GTP/Mg2+ binding site [chemical binding]; other site
192222004399	Switch I region; other site
192222004400	G2 box; other site
192222004401	Switch II region; other site
192222004402	G3 box; other site
192222004403	G4 box; other site
192222004404	G5 box; other site
192222004405	Catalytic cysteine-containing C-terminus of GTPase, MnmE; Region: GTPase_Cys_C; pfam12631
192222004406	HMMPfam hit to PF01926, GTPase of unknown function,score 1.7e-44
192222004407	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004408	membrane protein insertase; Provisional; Region: PRK01318
192222004409	60Kd inner membrane protein; Region: 60KD_IMP; cl00489
192222004410	HMMPfam hit to PF02096, 60Kd inner membrane protein, score 1.1e-110
192222004411	Haemolytic domain; Region: Haemolytic; cl00506
192222004412	HMMPfam hit to PF01809, Domain of unknown function DUF37, score 6e-25
192222004413	Ribonuclease P; Region: Ribonuclease_P; cl00457
192222004414	HMMPfam hit to PF00825, Ribonuclease P, score 2.6e-15
192222004415	Ribosomal protein L34; Region: Ribosomal_L34; cl00370
192222004416	HMMPfam hit to PF00468, Ribosomal protein L34,score 2.7e-18
192222004417	PS00784 Ribosomal protein L34 signature
192222004418	Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]; Region: COG1247
192222004419	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
192222004420	Coenzyme A binding pocket [chemical binding]; other site
192222004421	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.8e-13
192222004422	Uracil-DNA glycosylases (UDG) and related enzymes; Region: UDG_like; cl00483
192222004423	ligand binding site [chemical binding]; other site
192222004424	active site
192222004425	4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites; Region: 4HBT; cd00586
192222004426	active site
192222004427	HMMPfam hit to PF03061, Thioesterase superfamily,score 1.4e-18
192222004428	PS01328 4-hydroxybenzoyl-CoA thioesterase family active site
192222004429	PS00639 Eukaryotic thiol (cysteine) proteases histidine active site
192222004430	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature
192222004431	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004432	Original (2000) note: Cj0968, probable periplasmic protein, len: 80 aa; no Hp match. Contains probable N-terminal signal sequence. Similar to N-terminus of Cj0737 (53.3% identity in 92 aa overlap). The similarity continues in Cj0968, suggesting that this may be the start of a pseudogene; Original (2000) note: Cj0969, probable pseudogene,len 132 bp; 65.4% identical to part of Cj0737, similarity continues from upstream ORF. No Hp match; Updated (2006) note: No specific characterisation with acceptable identity scores has been carried out yet. Thus, kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Miscellaneous periplasmic proteins
192222004433	Hemolysin activation/secretion protein [Intracellular trafficking and secretion]; Region: FhaC; COG2831
192222004434	Surface antigen variable number repeat; Region: Surf_Ag_VNR; cl10520
192222004435	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222004436	S-adenosylmethionine binding site [chemical binding]; other site
192222004437	The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated...; Region: hot_dog; cl00509
192222004438	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004439	Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]; Region: COG1525
192222004440	Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds; Region: SNc; cd00175
192222004441	Catalytic site; other site
192222004442	HMMPfam hit to PF00565, Staphylococcal nuclease homologue, score 1.3e-34
192222004443	1 probable transmembrane helix predicted for Cj0979c by TMHMM2.0 at aa 21-39
192222004444	Xaa-His dipeptidase; Region: aa-his-dipept; TIGR01893
192222004445	Zinc peptidases M18, M20, M28, and M42; Region: Zinc_peptidase_like; cl14876
192222004446	metal binding site [ion binding]; metal-binding site
192222004447	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222004448	metabolite-proton symporter; Region: 2A0106; TIGR00883
192222004449	putative substrate translocation pore; other site
192222004450	HMMPfam hit to PF00083, Sugar (and other) transporter, score 6.5e-10
192222004451	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004452	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.8e-19
192222004453	PS00216 Sugar transport proteins signature 1
192222004454	Bacterial periplasmic substrate-binding proteins; Region: PBPb; smart00062
192222004455	Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of  substrates, such as, amino acids, peptides, sugars, vitamins and inorganic...; Region: PBPb; cd00134
192222004456	substrate binding pocket [chemical binding]; other site
192222004457	membrane-bound complex binding site; other site
192222004458	hinge residues; other site
192222004459	HMMPfam hit to PF00497, Bacterial extracellular solute-binding prot, score 4.6e-53
192222004460	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004461	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004462	Protein of unknown function (DUF328); Region: DUF328; cl01143
192222004463	HMMPfam hit to PF03883, Protein of unknown function (DUF328), score 1.8e-128
192222004464	Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]; Region: AbgB; COG1473
192222004465	M20 Peptidase Aminoacylase 1 subfamily; Region: M20_Acy1_like1; cd05666
192222004466	metal binding site [ion binding]; metal-binding site
192222004467	putative dimer interface [polypeptide binding]; other site
192222004468	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 8.8e-44
192222004469	PS00881 Protein splicing signature
192222004470	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 3.8e-12
192222004471	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222004472	putative substrate translocation pore; other site
192222004473	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.7e-16
192222004474	1 probable transmembrane helix predicted for Cj0988c by TMHMM2.0 at aa 25-42
192222004475	1 probable transmembrane helix predicted for Cj0989 by TMHMM2.0 at aa 4-21
192222004476	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
192222004477	The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved...; Region: HCP_like; cl14655
192222004478	Cysteine-rich domain; Region: CCG; pfam02754
192222004479	Cysteine-rich domain; Region: CCG; pfam02754
192222004480	HMMPfam hit to PF02754, Cysteine-rich domain, score 2.4e-11
192222004481	HMMPfam hit to PF02754, Cysteine-rich domain, score 6.7e-10
192222004482	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0013
192222004483	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222004484	coproporphyrinogen III oxidase; Provisional; Region: PRK09249
192222004485	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222004486	FeS/SAM binding site; other site
192222004487	HemN C-terminal domain; Region: HemN_C; pfam06969
192222004488	HMMPfam hit to PF06969, HemN C-terminal region,score 6.8e-41
192222004489	HMMPfam hit to PF04055, Radical SAM superfamily,score 3.5e-26
192222004490	Protein of unknown function (DUF2603); Region: DUF2603; pfam10788
192222004491	ornithine carbamoyltransferase; Provisional; Region: PRK00779
192222004492	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
192222004493	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004494	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 4.8e-46
192222004495	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 3.9e-67
192222004496	PS00097 Aspartate and ornithine carbamoyltransferases signature
192222004497	Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS; cd00384
192222004498	dimer interface [polypeptide binding]; other site
192222004499	active site
192222004500	Schiff base residues; other site
192222004501	HMMPfam hit to PF00490, Delta-aminolevulinic acid dehydratase, score 2e-176
192222004502	PS00169 Delta-aminolevulinic acid dehydratase active site
192222004503	GTP cyclohydrolase II [Coenzyme metabolism]; Region: RibA; COG0807
192222004504	GTP cyclohydrolase II (RibA).  GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the...; Region: GTP_cyclohydro2; cd00641
192222004505	dimerization interface [polypeptide binding]; other site
192222004506	active site
192222004507	HMMPfam hit to PF00925, GTP cyclohydrolase II,score 7e-67
192222004508	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222004509	HMMPfam hit to PF02527, Glucose inhibited division protein, score 1.4e-21
192222004510	PS00294 Prenyl group binding site (CAAX box)
192222004511	Conserved hypothetical protein 698; Region: Cons_hypoth698; cl01075
192222004512	HMMPfam hit to PF03601, Conserved hypothetical protein, score 3.7e-156
192222004513	Transcriptional regulator [Transcription]; Region: LysR; COG0583
192222004514	Helix-turn-helix domains; Region: HTH; cl00088
192222004515	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222004516	dimerization interface [polypeptide binding]; other site
192222004517	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix, score 7e-15
192222004518	HMMPfam hit to PF03466, LysR substrate binding domain, score 7.7e-23
192222004519	RNA polymerase sigma factor RpoD; Validated; Region: PRK05658
192222004520	Sigma-70 region 2; Region: Sigma70_r2; pfam04542
192222004521	Sigma-70 region 3; Region: Sigma70_r3; pfam04539
192222004522	Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or...; Region: Sigma70_r4; cd06171
192222004523	DNA binding residues [nucleotide binding]
192222004524	HMMPfam hit to PF00140, Sigma-70 factor, region,score 8.5e-15
192222004525	HMMPfam hit to PF04546, Sigma-70, non-essential region, score 0.01
192222004526	HMMPfam hit to PF04542, Sigma-70 region, score 6.2e-28
192222004527	PS00715 Sigma-70 factors family signature 1
192222004528	HMMPfam hit to PF04539, Sigma-70 region, score 5.3e-35
192222004529	HMMPfam hit to PF04545, Sigma-70, region, score 7.3e-19
192222004530	PS00716 Sigma-70 factors family signature 2
192222004531	Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction; Region: HP_PGM_like; cd07067
192222004532	catalytic core [active]
192222004533	Rhomboid family; Region: Rhomboid; cl11446
192222004534	HMMPfam hit to PF01694, Rhomboid family, score 2.2e-38
192222004535	ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; Region: HflB; COG0465
192222004536	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222004537	Walker A motif; other site
192222004538	ATP binding site [chemical binding]; other site
192222004539	Walker B motif; other site
192222004540	arginine finger; other site
192222004541	HMMPfam hit to PF01434, Peptidase family M41, score 0.00033
192222004542	HMMPfam hit to PF00004, ATPase family associated with various c, score 3.2e-83
192222004543	PS00674 AAA-protein family signature
192222004544	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004545	HMMPfam hit to PF06480, FtsH Extracellular, score 5e-36
192222004546	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
192222004547	MiaB-like tRNA modifying enzyme; Region: MiaB-like-C; TIGR01579
192222004548	HMMPfam hit to PF04055, Radical SAM superfamily,score 1.5e-18
192222004549	PS01278 Uncharacterized protein family UPF0004 signature
192222004550	HMMPfam hit to PF00919, Uncharacterized protein family UPF0004, score 8.5e-21
192222004551	Mitotic checkpoint protein; Region: MAD; pfam05557
192222004552	Mechanosensitive ion channel; Region: MS_channel; pfam00924
192222004553	HMMPfam hit to PF00924, Mechanosensitive ion channel, score 1.1e-24
192222004554	Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis; Region: DHQS; cd08195
192222004555	active site
192222004556	dimer interface [polypeptide binding]; other site
192222004557	metal binding site [ion binding]; metal-binding site
192222004558	HMMPfam hit to PF01761, 3-dehydroquinate synthase,score 7.1e-147
192222004559	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004560	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG3400
192222004561	Anion permease ArsB/NhaD.  These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life.  A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl15357
192222004562	HMMPfam hit to PF02080, TrkA-C domain, score 2.6e-11
192222004563	queuine tRNA-ribosyltransferase; Provisional; Region: tgt; cl00409
192222004564	Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343
192222004565	HMMPfam hit to PF01702, Queuine tRNA-ribosyltransferase, score 4.9e-110
192222004566	Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]; Region: CorA; COG0598
192222004567	2 probable transmembrane helices predicted for Cj1011 by TMHMM2.0 at aa 180-202 and 217-236
192222004568	1 probable transmembrane helix predicted for Cj1012c by TMHMM2.0 at aa 4-23
192222004569	ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]; Region: ResB; cl09125
192222004570	ResB-like family; Region: ResB; pfam05140
192222004571	Cytochrome C assembly protein; Region: Cytochrom_C_asm; cl00504
192222004572	HMMPfam hit to PF01578, Cytochrome C assembly protein, score 3.8e-49
192222004573	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivF; COG0410
192222004574	LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids.  The  E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a...; Region: ABC_TM1139_LivF_branched; cd03224
192222004575	Walker A/P-loop; other site
192222004576	ATP binding site [chemical binding]; other site
192222004577	Q-loop/lid; other site
192222004578	ABC transporter signature motif; other site
192222004579	Walker B; other site
192222004580	D-loop; other site
192222004581	H-loop/switch region; other site
192222004582	HMMPfam hit to PF00005, ABC transporter, score 1.7e-42
192222004583	PS00211 ABC transporters family signature
192222004584	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004585	ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]; Region: LivG; COG0411
192222004586	The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine.  MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E; Region: ABC_Mj1267_LivG_branched; cd03219
192222004587	Walker A/P-loop; other site
192222004588	ATP binding site [chemical binding]; other site
192222004589	Q-loop/lid; other site
192222004590	ABC transporter signature motif; other site
192222004591	Walker B; other site
192222004592	D-loop; other site
192222004593	H-loop/switch region; other site
192222004594	HMMPfam hit to PF00005, ABC transporter, score 1.5e-57
192222004595	PS00211 ABC transporters family signature
192222004596	PS00063 Aldo/keto reductase family  active site signature
192222004597	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004598	Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivM_like; cd06581
192222004599	TM-ABC transporter signature motif; other site
192222004600	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1.8e-32
192222004601	Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of...; Region: TM_PBP1_LivH_like; cd06582
192222004602	TM-ABC transporter signature motif; other site
192222004603	HMMPfam hit to PF02653, Branched-chain amino acid transport syst, score 1e-38
192222004604	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004605	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
192222004606	Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_12; cd06347
192222004607	putative ligand binding site [chemical binding]; other site
192222004608	HMMPfam hit to PF01094, Receptor family ligand binding region, score 3.8e-49
192222004609	ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]; Region: LivK; COG0683
192222004610	Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions; Region: PBP1_ABC_ligand_binding_like_12; cd06347
192222004611	putative ligand binding site [chemical binding]; other site
192222004612	HMMPfam hit to PF01094, Receptor family ligand binding region, score 1.3e-52
192222004613	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide
192222004614	Cytochrome c; Region: Cytochrom_C; cl11414
192222004615	HMMPfam hit to PF00034, Cytochrome c, score 0.0087
192222004616	PS00190 Cytochrome c family heme-binding site signature
192222004617	1 probable transmembrane helix predicted for Cj1020c by TMHMM2.0 at aa 5-27
192222004618	Campylobacter major outer membrane protein; Region: Campylo_MOMP; pfam05538
192222004619	Uncharacterized protein family, UPF0114; Region: UPF0114; cl01078
192222004620	HMMPfam hit to PF07053, Protein of unknown function (DUF1334), score 3e-81
192222004621	aspartate-semialdehyde dehydrogenase; Provisional; Region: PRK14874
192222004622	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004623	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; cl15856
192222004624	HMMPfam hit to PF02774, Semialdehyde dehydrogenase,dimerisat, score 6.2e-88
192222004625	PS01103 Aspartate-semialdehyde dehydrogenase signature
192222004626	HMMPfam hit to PF01118, Semialdehyde dehydrogenase,NAD bindi, score 5.8e-59
192222004627	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204
192222004628	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222004629	active site
192222004630	phosphorylation site [posttranslational modification]
192222004631	intermolecular recognition site; other site
192222004632	dimerization interface [polypeptide binding]; other site
192222004633	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222004634	Walker A motif; other site
192222004635	ATP binding site [chemical binding]; other site
192222004636	Walker B motif; other site
192222004637	arginine finger; other site
192222004638	HMMPfam hit to PF00158, Sigma-54 interaction domain, score 9.7e-136
192222004639	PS00676 Sigma-54 interaction domain ATP-binding region B signature
192222004640	PS00675 Sigma-54 interaction domain ATP-binding region A signature
192222004641	HMMPfam hit to PF00072, Response regulator receiver domain, score 9.1e-27
192222004642	LPP20 lipoprotein; Region: LPP20; cl15824
192222004643	HMMPfam hit to PF04164, Protein of unknown function, DUF400, score 3.2e-61
192222004644	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004645	DNA gyrase subunit A; Validated; Region: PRK05560
192222004646	DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA...; Region: TOP4c; cd00187
192222004647	CAP-like domain; other site
192222004648	active site
192222004649	primary dimer interface [polypeptide binding]; other site
192222004650	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
192222004651	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
192222004652	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
192222004653	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
192222004654	DNA gyrase C-terminal domain, beta-propeller; Region: DNA_gyraseA_C; pfam03989
192222004655	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 9.4e-11
192222004656	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 1.4e-15
192222004657	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 2.1e-15
192222004658	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 2.4e-14
192222004659	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 5.4e-15
192222004660	HMMPfam hit to PF03989, DNA gyrase C-terminal domain, beta-prop, score 4.8e-14
192222004661	HMMPfam hit to PF00521, DNA gyrase/topoisomerase IV, subunit A, score 0
192222004662	Predicted amidophosphoribosyltransferases [General function prediction only]; Region: ComFC; COG1040
192222004663	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222004664	active site
192222004665	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222004666	Outer membrane lipoprotein carrier protein LolA; Region: LolA; cl01065
192222004667	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004668	GTP-binding protein LepA; Provisional; Region: PRK05433
192222004669	LepA also known as Elongation Factor 4 (EF4); Region: LepA; cd01890
192222004670	G1 box; other site
192222004671	putative GEF interaction site [polypeptide binding]; other site
192222004672	GTP/Mg2+ binding site [chemical binding]; other site
192222004673	Switch I region; other site
192222004674	G2 box; other site
192222004675	G3 box; other site
192222004676	Switch II region; other site
192222004677	G4 box; other site
192222004678	G5 box; other site
192222004679	Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to...; Region: Translation_Factor_II_like; cl02787
192222004680	lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane.   LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits...; Region: lepA_C; cd03709
192222004681	GTP-binding protein LepA C-terminus; Region: LepA_C; pfam06421
192222004682	HMMPfam hit to PF06421, GTP-binding protein LepA C-terminus, score 1.2e-74
192222004683	HMMPfam hit to PF00679, Elongation factor G C-terminus, score 3.7e-39
192222004684	HMMPfam hit to PF03144, Elongation factor Tu domain, score 1.2e-10
192222004685	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 5.1e-73
192222004686	PS00301 GTP-binding elongation factors signature
192222004687	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004688	Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]; Region: TolC; COG1538
192222004689	HMMPfam hit to PF02321, Outer membrane efflux protein, score 3.8e-05
192222004690	HMMPfam hit to PF02321, Outer membrane efflux protein, score 1.3e-11
192222004691	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222004692	Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl; Region: Biotinyl_lipoyl_domains; cl11404
192222004693	Cation/multidrug efflux pump [Defense mechanisms]; Region: AcrB; COG0841
192222004694	HMMPfam hit to PF00873, AcrB/AcrD/AcrF family,score 5.6e-198
192222004695	12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34, 319-338, 345-367, 372-394,415-437, 452-474, 508-530, 829-851, 856-878, 883-905,931-953 and 963-985
192222004696	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004697	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
192222004698	HSP70 interaction site [polypeptide binding]; other site
192222004699	HMMPfam hit to PF00226, DnaJ domain, score 1.5e-05
192222004700	Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: COG2935
192222004701	Arginine-tRNA-protein transferase, N terminus; Region: ATE_N; pfam04376
192222004702	N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357
192222004703	HMMPfam hit to PF04377, Arginine-tRNA-protein transferase, C terminu, score 7.3e-72
192222004704	HMMPfam hit to PF04376, Arginine-tRNA-protein transferase, N terminu, score 1.9e-42
192222004705	acetyl-CoA carboxylase subunit A; Validated; Region: PRK08463
192222004706	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
192222004707	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222004708	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365
192222004709	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 7.6e-49
192222004710	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 2.9e-98
192222004711	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
192222004712	PS00866 Carbamoyl-phosphate synthase subdomain signature 1
192222004713	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.3e-42
192222004714	Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511
192222004715	HMMPfam hit to PF01098, Cell cycle protein, score 6e-78
192222004716	10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29, 39-58, 71-93, 103-125,145-164, 168-186, 191-208, 294-314, 326-348 and 358-380
192222004717	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Region: murG; TIGR01133
192222004718	MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide...; Region: GT1_MurG; cd03785
192222004719	active site
192222004720	homodimer interface [polypeptide binding]; other site
192222004721	HMMPfam hit to PF03033, Glycosyltransferase family,score 1.4e-14
192222004722	HMMPfam hit to PF04101, Glycosyltransferase family,score 1.2e-40
192222004723	Cyanate permease [Inorganic ion transport and metabolism]; Region: CynX; COG2807
192222004724	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.2e-14
192222004725	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004726	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004727	AraC-type DNA-binding domain-containing proteins [Transcription]; Region: AraC; COG2207
192222004728	Bacterial regulatory helix-turn-helix proteins, AraC family; Region: HTH_AraC; pfam00165
192222004729	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 3.3e-11
192222004730	PS00041 Bacterial regulatory proteins, araC family signature
192222004731	HMMPfam hit to PF00165, Bacterial regulatory helix-turn-helix protei, score 0.096
192222004732	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
192222004733	thiamine phosphate binding site [chemical binding]; other site
192222004734	active site
192222004735	pyrophosphate binding site [ion binding]; other site
192222004736	thiazole biosynthesis protein ThiH; Region: thiH; TIGR02351
192222004737	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222004738	FeS/SAM binding site; other site
192222004739	Biotin and Thiamin Synthesis associated domain; Region: BATS; cl06149
192222004740	HMMPfam hit to PF06968, Biotin and Thiamin Synthesis associated d, score 1.4e-41
192222004741	HMMPfam hit to PF04055, Radical SAM superfamily,score 2.4e-10
192222004742	PS00030 Eukaryotic  RNA-binding region RNP-1 signature
192222004743	Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes...; Region: ThiG; cd04728
192222004744	ThiS interaction site; other site
192222004745	putative active site [active]
192222004746	tetramer interface [polypeptide binding]; other site
192222004747	HMMPfam hit to PF05690, Thiazole biosynthesis protein ThiG, score 8.9e-158
192222004748	ThiS-like ubiquitin; Region: ThiS-like; pfam14453
192222004749	thiamine biosynthesis protein ThiF, family 2; Region: thiF_fam2; TIGR02354
192222004750	E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on...; Region: E1_ThiF_like; cd01487
192222004751	putative ATP binding site [chemical binding]; other site
192222004752	putative substrate interface [chemical binding]; other site
192222004753	HMMPfam hit to PF00899, ThiF family, score 4.1e-30
192222004754	ThiaminS ubiquitin-like sulfur carrier protein; Region: ThiS; cd00565
192222004755	thiS-thiF/thiG interaction site; other site
192222004756	HMMPfam hit to PF02597, ThiS family, score 1.4e-12
192222004757	succinyl-diaminopimelate desuccinylase, proteobacterial clade; Region: dapE_proteo; TIGR01246
192222004758	M20 Peptidase proteobacterial DapE encoded N-succinyl-L,L-diaminopimelic acid desuccinylase; Region: M20_DapE_proteobac; cd03891
192222004759	metal binding site [ion binding]; metal-binding site
192222004760	dimer interface [polypeptide binding]; other site
192222004761	HMMPfam hit to PF01546, Peptidase family M20/M25/M40, score 1.5e-35
192222004762	HMMPfam hit to PF07687, Peptidase dimerisation domain, score 9.4e-17
192222004763	PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1
192222004764	LysE type translocator; Region: LysE; cl00565
192222004765	HMMPfam hit to PF01810, LysE type translocator,score 3.1e-59
192222004766	NAD-dependent deacetylase; Provisional; Region: PRK00481
192222004767	SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+; Region: SIR2; cl00195
192222004768	HMMPfam hit to PF02146, Sir2 family, score 4.1e-40
192222004769	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; cl14958
192222004770	Type I restriction-modification system methyltransferase subunit [Defense mechanisms]; Region: HsdM; COG0286
192222004771	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004772	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
192222004773	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
192222004774	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
192222004775	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 8.2e-06
192222004776	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 4.8e-08
192222004777	PS00092 N-6 Adenine-specific DNA methylases signature
192222004778	PS00290 Immunoglobulins and major histocompatibility complex proteins signature
192222004779	recombination and DNA strand exchange inhibitor protein; Reviewed; Region: PRK00409
192222004780	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222004781	Walker A/P-loop; other site
192222004782	ATP binding site [chemical binding]; other site
192222004783	Q-loop/lid; other site
192222004784	ABC transporter signature motif; other site
192222004785	Walker B; other site
192222004786	D-loop; other site
192222004787	H-loop/switch region; other site
192222004788	Smr domain; Region: Smr; cl02619
192222004789	HMMPfam hit to PF01713, Smr domain, score 2.2e-31
192222004790	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004791	UDP-N-acetylmuramate--L-alanine ligase; Provisional; Region: murC; PRK00421
192222004792	Mur ligase family, catalytic domain; Region: Mur_ligase; pfam01225
192222004793	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
192222004794	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 1.1e-24
192222004795	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 6.5e-27
192222004796	Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]; Region: MdoB; COG1368
192222004797	Sulfatase; Region: Sulfatase; cl10460
192222004798	HMMPfam hit to PF00884, Sulfatase, score 1.4e-94
192222004799	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004800	PS00044 Bacterial regulatory proteins, lysR family signature
192222004801	Predicted amidohydrolase [General function prediction only]; Region: COG0388
192222004802	Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes; Region: nitrilase; cd07197
192222004803	active site
192222004804	catalytic triad [active]
192222004805	dimer interface [polypeptide binding]; other site
192222004806	Exonuclease VII small subunit; Region: Exonuc_VII_S; cl00750
192222004807	inosine 5'-monophosphate dehydrogenase; Reviewed; Region: PRK05567
192222004808	TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate...; Region: TIM_phosphate_binding; cl09108
192222004809	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key...; Region: CBS_pair_IMPDH; cd04601
192222004810	IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine...; Region: IMPDH; cd00381
192222004811	active site
192222004812	HMMPfam hit to PF00478, IMP dehydrogenase / GMP reductase domain, score 4.6e-211
192222004813	PS00487 IMP dehydrogenase / GMP reductase signature
192222004814	HMMPfam hit to PF00571, CBS domain, score 4.4e-11
192222004815	HMMPfam hit to PF00571, CBS domain, score 1.3e-17
192222004816	Amidase; Region: Amidase; cl11426
192222004817	HMMPfam hit to PF01425, Amidase, score 4.2e-161
192222004818	PS00571 Amidases signature
192222004819	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004820	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004821	1 probable transmembrane helix predicted for Cj1060c by TMHMM2.0 at aa 10-29
192222004822	isoleucyl-tRNA synthetase; Reviewed; Region: ileS; PRK05743
192222004823	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222004824	active site
192222004825	HIGH motif; other site
192222004826	nucleotide binding site [chemical binding]; other site
192222004827	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
192222004828	catalytic core domain of isoleucyl-tRNA synthetases; Region: IleRS_core; cd00818
192222004829	active site
192222004830	KMSKS motif; other site
192222004831	Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases; Region: Anticodon_Ia_Ile_BEm; cd07960
192222004832	tRNA binding surface [nucleotide binding]; other site
192222004833	anticodon binding site; other site
192222004834	HMMPfam hit to PF06827, Zinc finger found in FPG and IleRS, score 0.0023
192222004835	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 0
192222004836	PS00133 Zinc carboxypeptidases, zinc-binding region 2 signature
192222004837	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222004838	Competence-damaged protein; Region: CinA; cl00666
192222004839	HMMPfam hit to PF02464, Competence-damaged protein,score 1.5e-28
192222004840	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
192222004841	Coenzyme A binding pocket [chemical binding]; other site
192222004842	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.1e-12
192222004843	Original (2000) note: Cj1064, possible nitroreductase pseudogene, len: 617 bp; similar to many e.g. YFKO_BACSU  NAD(P)H nitroreductase YFKO (221 aa). Contains single frasemhift. Equivalent to HP0642, and similar to downstream (intact) gene Cj1066. Contains Pfam match to entry PF00881 Nitroreductase; Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilus with acceptable identity scores. Thus,  not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Misc; PMID:8947835, PMID:7813889
192222004844	HMMPfam hit to PF00881, Nitroreductase family,score 1.3e-32
192222004845	NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family...; Region: NfsB_like_nitroreductase; cd02149
192222004846	dimer interface [polypeptide binding]; other site
192222004847	FMN binding site [chemical binding]; other site
192222004848	HMMPfam hit to PF00881, Nitroreductase family,score 2e-33
192222004849	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
192222004850	4 probable transmembrane helices predicted for Cj1067 by TMHMM2.0 at aa 7-24, 34-56, 77-99 and 141-163
192222004851	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 6.5e-30
192222004852	PS00379 CDP-alcohol phosphatidyltransferases signature
192222004853	Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]; Region: COG0750
192222004854	RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog...; Region: S2P-M50_PDZ_RseP-like; cd06163
192222004855	active site
192222004856	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
192222004857	protein binding site [polypeptide binding]; other site
192222004858	Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic...; Region: S2P-M50; cl10020
192222004859	putative substrate binding region [chemical binding]; other site
192222004860	4 probable transmembrane helices predicted for Cj1068 by TMHMM2.0 at aa 7-29, 112-134, 291-313 and 338-360
192222004861	HMMPfam hit to PF02163, Peptidase family M50, score 1.2e-61
192222004862	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
192222004863	Protein of unknown function (DUF535); Region: DUF535; cl01128
192222004864	HMMPfam hit to PF04393, Protein of unknown function (DUF535), score 6.6e-134
192222004865	Ribosomal protein S6; Region: Ribosomal_S6; cl00414
192222004866	HMMPfam hit to PF01250, Ribosomal protein S6, score 3.5e-37
192222004867	Single-stranded DNA-binding protein [DNA replication, recombination, and repair]; Region: Ssb; COG0629
192222004868	SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date...; Region: SSB_OBF; cd04496
192222004869	dimer interface [polypeptide binding]; other site
192222004870	ssDNA binding site [nucleotide binding]; other site
192222004871	tetramer (dimer of dimers) interface [polypeptide binding]; other site
192222004872	HMMPfam hit to PF00436, Single-strand binding protein family, score 6.3e-33
192222004873	PS00735 Single-strand binding protein family signature 1
192222004874	Ribosomal protein S18; Region: Ribosomal_S18; cl00373
192222004875	HMMPfam hit to PF01084, Ribosomal protein S18,score 5.9e-25
192222004876	ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]; Region: Lon; COG0466
192222004877	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222004878	Walker A motif; other site
192222004879	ATP binding site [chemical binding]; other site
192222004880	Walker B motif; other site
192222004881	arginine finger; other site
192222004882	Subunit ChlI of Mg-chelatase; Region: ChlI; cl12214
192222004883	HMMPfam hit to PF05362, Lon protease (S16) C-terminal proteolytic do, score 3.7e-98
192222004884	PS01046 ATP-dependent serine proteases, lon family,serine active site
192222004885	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 6.4e-49
192222004886	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004887	HMMPfam hit to PF02190, ATP-dependent protease La (LON) domain, score 1.9e-06
192222004888	DNA uptake lipoprotein [General function prediction only]; Region: ComL; COG4105
192222004889	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004890	FliW protein; Region: FliW; cl00740
192222004891	HMMPfam hit to PF02623, Uncharacterized BCR,COG1699, score 1.2e-36
192222004892	pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880
192222004893	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222004894	HMMPfam hit to PF01089, Delta 1-pyrroline-5-carboxylate reductase, score 2.4e-44
192222004895	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004896	PS00521 Delta 1-pyrroline-5-carboxylate reductase signature
192222004897	1 probable transmembrane helix predicted for Cj1077 by TMHMM2.0 at aa 7-29
192222004898	1 probable transmembrane helix predicted for Cj1078 by TMHMM2.0 at aa 5-24
192222004899	PS00572 Glycosyl hydrolases family 1 active site
192222004900	1 probable transmembrane helix predicted for Cj1079 by TMHMM2.0 at aa 5-27
192222004901	uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928
192222004902	Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in...; Region: HemD; cd06578
192222004903	active site
192222004904	HMMPfam hit to PF02602, Uroporphyrinogen-III synthase HemD, score 1.6e-06
192222004905	Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5-; Region: TMP_TenI; cd00564
192222004906	thiamine phosphate binding site [chemical binding]; other site
192222004907	active site
192222004908	pyrophosphate binding site [ion binding]; other site
192222004909	HMMPfam hit to PF02581, Thiamine monophosphate synthase/TENI, score 1.5e-63
192222004910	4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of...; Region: HMPP_kinase; cd01169
192222004911	substrate binding site [chemical binding]; other site
192222004912	dimer interface [polypeptide binding]; other site
192222004913	ATP binding site [chemical binding]; other site
192222004914	Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]; Region: COG2231
192222004915	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
192222004916	minor groove reading motif; other site
192222004917	helix-hairpin-helix signature motif; other site
192222004918	active site
192222004919	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 2.7e-11
192222004920	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222004921	ATPases associated with a variety of cellular activities; Region: AAA; smart00382
192222004922	Walker A motif; other site
192222004923	ATP binding site [chemical binding]; other site
192222004924	Walker B motif; other site
192222004925	arginine finger; other site
192222004926	HMMPfam hit to PF05673, Protein of unknown function (DUF815), score 3.3e-60
192222004927	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004928	Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]; Region: Mfd; COG1197
192222004929	CarD-like/TRCF domain; Region: CarD_CdnL_TRCF; cl00588
192222004930	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
192222004931	ATP binding site [chemical binding]; other site
192222004932	putative Mg++ binding site [ion binding]; other site
192222004933	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may...; Region: HELICc; cd00079
192222004934	nucleotide binding region [chemical binding]; other site
192222004935	ATP-binding site [chemical binding]; other site
192222004936	TRCF domain; Region: TRCF; cl04088
192222004937	HMMPfam hit to PF03461, TRCF domain, score 5.5e-31
192222004938	HMMPfam hit to PF00271, Helicase conserved C-terminal domain, score 1.3e-15
192222004939	HMMPfam hit to PF00270, DEAD/DEAH box helicase,score 1.7e-25
192222004940	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004941	HMMPfam hit to PF02559, CarD-like/TRCF domain,score 4.1e-42
192222004942	Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519
192222004943	HMMPfam hit to PF04519, Protein of unknown function, DUF583, score 2.2e-48
192222004944	PS00430 TonB-dependent receptor proteins signature 1
192222004945	Peptidase family M23; Region: Peptidase_M23; pfam01551
192222004946	HMMPfam hit to PF01551, Peptidase family M23, score 1.8e-47
192222004947	1 probable transmembrane helix predicted for Cj1087c by TMHMM2.0 at aa 28-47
192222004948	folylpolyglutamate synthase/dihydrofolate synthase; Region: folC; TIGR01499
192222004949	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
192222004950	Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as domain of unknown function 1 (DUF1). It is widely present in bacteria and often links to a wide range of non-homologous domains in...; Region: GGDEF; cl00291
192222004951	active site
192222004952	I-site; other site
192222004953	Lipopolysaccharide-assembly; Region: LptE; cl01125
192222004954	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004955	leucyl-tRNA synthetase; Validated; Region: leuS; PRK00390
192222004956	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
192222004957	HIGH motif; other site
192222004958	Leucyl-tRNA synthetase, Domain 2; Region: tRNA-synt_1_2; pfam13603
192222004959	catalytic core domain of leucyl-tRNA synthetases; Region: LeuRS_core; cd00812
192222004960	active site
192222004961	KMSKS motif; other site
192222004962	Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; Region: Anticodon_Ia_like; cl12020
192222004963	tRNA binding surface [nucleotide binding]; other site
192222004964	anticodon binding site; other site
192222004965	PS00017 ATP/GTP-binding site motif A (P-loop)
192222004966	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004967	HMMPfam hit to PF00133, tRNA synthetases class I (I, L, M and V), score 7.4e-139
192222004968	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222004969	preprotein translocase subunit SecF; Reviewed; Region: secF; PRK13022
192222004970	SecD/SecF GG Motif; Region: Sec_GG; pfam07549
192222004971	Protein export membrane protein; Region: SecD_SecF; cl14618
192222004972	HMMPfam hit to PF02355, Protein export membrane protein, score 9.9e-82
192222004973	HMMPfam hit to PF07549, SecD/SecF GG Motif, score 0.00022
192222004974	preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812
192222004975	Protein export membrane protein; Region: SecD_SecF; cl14618
192222004976	HMMPfam hit to PF02355, Protein export membrane protein, score 3.4e-06
192222004977	HMMPfam hit to PF07549, SecD/SecF GG Motif, score 0.00025
192222004978	Preprotein translocase subunit; Region: YajC; cl00806
192222004979	HMMPfam hit to PF02699, Preprotein translocase subunit, score 8.3e-40
192222004980	1 probable transmembrane helix predicted for Cj1094c by TMHMM2.0 at aa 5-24
192222004981	apolipoprotein N-acyltransferase; Reviewed; Region: PRK12291
192222004982	Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes; Region: nitrilase; cl11424
192222004983	active site
192222004984	catalytic triad [active]
192222004985	dimer interface [polypeptide binding]; other site
192222004986	7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45, 49-68, 75-97, 101-123,128-145, 155-177 and 184-201
192222004987	S-adenosylmethionine synthetase; Validated; Region: PRK05250
192222004988	S-adenosylmethionine synthetase, N-terminal domain; Region: S-AdoMet_synt_N; pfam00438
192222004989	S-adenosylmethionine synthetase, central domain; Region: S-AdoMet_synt_M; pfam02772
192222004990	S-adenosylmethionine synthetase, C-terminal domain; Region: S-AdoMet_synt_C; pfam02773
192222004991	HMMPfam hit to PF02773, S-adenosylmethionine synthetase, C-te, score 9e-51
192222004992	HMMPfam hit to PF02772, S-adenosylmethionine synthetase, cent, score 1e-22
192222004993	PS00376 S-adenosylmethionine synthetase signature 1
192222004994	HMMPfam hit to PF00438, S-adenosylmethionine synthetase, N-te, score 7.3e-25
192222004995	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
192222004996	9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31, 41-63, 83-105, 139-161,182-201, 216-238, 245-267, 287-309 and 322-344
192222004997	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 4e-101
192222004998	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222004999	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005000	aspartate carbamoyltransferase catalytic subunit; Provisional; Region: pyrB; PRK00856
192222005001	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Region: OTCace_N; pfam02729
192222005002	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005003	HMMPfam hit to PF02729, Aspartate/ornithine carbamoyltransferase, ca, score 2.7e-47
192222005004	PS00097 Aspartate and ornithine carbamoyltransferases signature
192222005005	HMMPfam hit to PF00185, Aspartate/ornithine carbamoyltransferase, As, score 8.3e-14
192222005006	oligoendopeptidase, pepF/M3 family; Region: M3_fam_3; TIGR02290
192222005007	Peptidase family M3B Oligopeptidase F (PepF); Region: M3B_PepF_5; cd09610
192222005008	active site
192222005009	Zn binding site [ion binding]; other site
192222005010	HMMPfam hit to PF01432, Peptidase family M3, score 1.3e-73
192222005011	PS00142 Neutral zinc metallopeptidases,zinc-binding region signature
192222005012	ATP-dependent DNA helicase PcrA; Region: pcrA; TIGR01073
192222005013	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222005014	Family description; Region: UvrD_C_2; cl15862
192222005015	HMMPfam hit to PF00580, UvrD/REP helicase, score 2.6e-149
192222005016	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005017	tRNA pseudouridine synthase B; Provisional; Region: truB; PRK04099
192222005018	PseudoU_synth:  Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families.  This group consists of...; Region: PseudoU_synth; cl00130
192222005019	active site
192222005020	HMMPfam hit to PF01509, TruB family pseudouridylate synthase (N term, score 1.1e-25
192222005021	Global regulator protein family; Region: CsrA; cl00670
192222005022	HMMPfam hit to PF02599, Global regulator protein family, score 1.1e-31
192222005023	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional; Region: PRK04181
192222005024	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
192222005025	HMMPfam hit to PF00288, GHMP kinases  ATP-binding protei, score 1.2e-17
192222005026	Small protein B (SmpB) is a component of the trans-translation system in prokaryotes for releasing stalled ribosome from damaged messenger RNAs; Region: SmpB; cd09294
192222005027	SmpB-tmRNA interface; other site
192222005028	HMMPfam hit to PF01668, SmpB protein, score 1.8e-35
192222005029	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
192222005030	catalytic residues [active]
192222005031	ATP-dependent Clp protease adaptor protein ClpS; Region: ClpS; cl00933
192222005032	HMMPfam hit to PF02617, ATP-dependent Clp protease adaptor protein C, score 2.9e-43
192222005033	ATP-dependent Clp protease ATP-binding subunit clpA; Region: ClpA; TIGR02639
192222005034	Clp amino terminal domain; Region: Clp_N; pfam02861
192222005035	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222005036	Walker A motif; other site
192222005037	ATP binding site [chemical binding]; other site
192222005038	Walker B motif; other site
192222005039	arginine finger; other site
192222005040	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222005041	Walker A motif; other site
192222005042	ATP binding site [chemical binding]; other site
192222005043	Walker B motif; other site
192222005044	arginine finger; other site
192222005045	C-terminal, D2-small domain, of ClpB protein; Region: ClpB_D2-small; cl11083
192222005046	HMMPfam hit to PF02861, Clp amino terminal domain,score 3.7e-05
192222005047	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 9e-08
192222005048	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005049	HMMPfam hit to PF07724, ATPase family associated with various cellul, score 6e-80
192222005050	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 3.8e-05
192222005051	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005052	PS00871 Chaperonins clpA/B signature 2
192222005053	N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357
192222005054	HMMPfam hit to PF03588, Leucyl/phenylalanyl-tRNA protein transf, score 9.3e-105
192222005055	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
192222005056	PAS domain; Region: PAS_9; pfam13426
192222005057	putative active site [active]
192222005058	heme pocket [chemical binding]; other site
192222005059	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
192222005060	PAS domain; Region: PAS_9; pfam13426
192222005061	putative active site [active]
192222005062	heme pocket [chemical binding]; other site
192222005063	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222005064	dimer interface [polypeptide binding]; other site
192222005065	putative CheW interface [polypeptide binding]; other site
192222005066	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.9e-15
192222005067	HMMPfam hit to PF00785, PAC motif, score 5.7e-06
192222005068	HMMPfam hit to PF00785, PAC motif, score 0.11
192222005069	MarC family integral membrane protein; Region: MarC; cl00919
192222005070	HMMPfam hit to PF01914, MarC family integral membrane protein, score 1.4e-15
192222005071	methionine sulfoxide reductase B; Provisional; Region: PRK05508
192222005072	methionine sulfoxide reductase B; Provisional; Region: PRK00222; cl15841
192222005073	HMMPfam hit to PF01641, SelR domain, score 1.8e-58
192222005074	Ferritin-like superfamily of diiron-containing four-helix-bundle proteins; Region: Ferritin_like; cd00657
192222005075	dinuclear metal binding motif [ion binding]; other site
192222005076	HMMPfam hit to PF04305, Protein of unknown function (DUF455), score 4.6e-167
192222005077	Phosphatidylserine synthase [Lipid metabolism]; Region: PssA; COG1183
192222005078	CDP-alcohol phosphatidyltransferase; Region: CDP-OH_P_transf; cl00453
192222005079	HMMPfam hit to PF01066, CDP-alcohol phosphatidyltransferase, score 3.4e-23
192222005080	PS00379 CDP-alcohol phosphatidyltransferases signature
192222005081	Phosphatidylserine decarboxylase; Region: PS_Dcarbxylase; cl03656
192222005082	1 probable transmembrane helix predicted for Cj1115c by TMHMM2.0 at aa 10-44
192222005083	FtsH Extracellular; Region: FtsH_ext; pfam06480
192222005084	ATP-dependent metalloprotease FtsH; Region: FtsH_fam; TIGR01241
192222005085	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222005086	Walker A motif; other site
192222005087	ATP binding site [chemical binding]; other site
192222005088	Walker B motif; other site
192222005089	arginine finger; other site
192222005090	Peptidase family M41; Region: Peptidase_M41; pfam01434
192222005091	HMMPfam hit to PF01434, Peptidase family M41, score 1.1e-86
192222005092	HMMPfam hit to PF00004, ATPase family associated with various c, score 3e-87
192222005093	PS00674 AAA-protein family signature
192222005094	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005095	HMMPfam hit to PF06480, FtsH Extracellular, score 4.9e-38
192222005096	ribosomal protein L11 methyltransferase; Reviewed; Region: prmA; PRK00517
192222005097	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005098	HMMPfam hit to PF06325, Ribosomal protein L11 methyltransferase (Prm, score 1.6e-22
192222005099	chemotaxis regulatory protein CheY; Provisional; Region: PRK10610
192222005100	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222005101	active site
192222005102	phosphorylation site [posttranslational modification]
192222005103	intermolecular recognition site; other site
192222005104	dimerization interface [polypeptide binding]; other site
192222005105	HMMPfam hit to PF00072, Response regulator receiver domain, score 3.7e-32
192222005106	Cache domain; Region: Cache_1; pfam02743
192222005107	Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: COG1086
192222005108	UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237
192222005109	NAD(P) binding site [chemical binding]; other site
192222005110	homodimer interface [polypeptide binding]; other site
192222005111	substrate binding site [chemical binding]; other site
192222005112	active site
192222005113	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 4e-140
192222005114	aminotransferase, LLPSF_NHT_00031 family; Region: NHT_00031; TIGR04181
192222005115	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
192222005116	inhibitor-cofactor binding pocket; inhibition site
192222005117	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222005118	catalytic residue [active]
192222005119	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 2e-75
192222005120	sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; Region: NeuD_NnaD; TIGR03570
192222005121	Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing...; Region: LbH_AT_putative; cd03360
192222005122	putative trimer interface [polypeptide binding]; other site
192222005123	putative CoA binding site [chemical binding]; other site
192222005124	HMMPfam hit to PF00132, no description, score 4
192222005125	HMMPfam hit to PF00132, no description, score 20
192222005126	HMMPfam hit to PF00132, no description, score 65
192222005127	Bacterial sugar transferase; Region: Bac_transf; cl00939
192222005128	HMMPfam hit to PF02397, Bacterial sugar transferase, score 1.8e-42
192222005129	1 probable transmembrane helix predicted for Cj1124c by TMHMM2.0 at aa 12-33
192222005130	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
192222005131	This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides; Region: GT1_cap1E_like; cd03808
192222005132	putative ADP-binding pocket [chemical binding]; other site
192222005133	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.3e-48
192222005134	Oligosaccharyl transferase STT3 subunit; Region: STT3; pfam02516
192222005135	HMMPfam hit to PF02516, Oligosaccharyl transferase STT3 subunit, score 1e-204
192222005136	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
192222005137	This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core; Region: GT1_WabH_like; cd03811
192222005138	putative ADP-binding pocket [chemical binding]; other site
192222005139	HMMPfam hit to PF00534, Glycosyl transferases group, score 4.1e-42
192222005140	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222005141	active site
192222005142	HMMPfam hit to PF00535, Glycosyl transferase, score 1.2e-41
192222005143	Glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaG; COG0438
192222005144	This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be...; Region: GT1_amsD_like; cd03820
192222005145	putative ADP-binding pocket [chemical binding]; other site
192222005146	HMMPfam hit to PF00534, Glycosyl transferases group, score 1e-47
192222005147	ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]; Region: CydD; COG4988
192222005148	ABC transporter transmembrane region; Region: ABC_membrane; cl00549
192222005149	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222005150	Walker A/P-loop; other site
192222005151	ATP binding site [chemical binding]; other site
192222005152	Q-loop/lid; other site
192222005153	ABC transporter signature motif; other site
192222005154	Walker B; other site
192222005155	D-loop; other site
192222005156	H-loop/switch region; other site
192222005157	HMMPfam hit to PF00005, ABC transporter, score 2e-60
192222005158	PS00211 ABC transporters family signature
192222005159	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005160	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 1.9e-07
192222005161	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222005162	UDP-glucose-4-epimerase; Region: galE; TIGR01179
192222005163	UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; Region: UDP_G4E_1_SDR_e; cd05247
192222005164	NAD binding site [chemical binding]; other site
192222005165	homodimer interface [polypeptide binding]; other site
192222005166	active site
192222005167	substrate binding site [chemical binding]; other site
192222005168	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 2.2e-109
192222005169	Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases; Region: DNA_polB_like1_exo; cd05782
192222005170	active site
192222005171	catalytic site [active]
192222005172	substrate binding site [chemical binding]; other site
192222005173	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; Region: DNA_pol_B_exo2; pfam10108
192222005174	HMMPfam hit to PF03104, DNA polymerase family B,exonuclease do, score 0.0038
192222005175	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
192222005176	Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate...; Region: Glycosyltransferase_GTB_type; cl10013
192222005177	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
192222005178	putative active site [active]
192222005179	HMMPfam hit to PF01075, Glycosyltransferase family,score 3e-20
192222005180	Bacterial lipid A biosynthesis acyltransferase; Region: Lip_A_acyltrans; pfam03279
192222005181	Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like; Region: LPLAT_LABLAT-like; cd07984
192222005182	putative acyl-acceptor binding pocket; other site
192222005183	HMMPfam hit to PF03279, Bacterial lipid A biosynthesis acyltr, score 7e-34
192222005184	1 probable transmembrane helix predicted for Cj1134 by TMHMM2.0 at aa 13-35
192222005185	region with low G+C: 25.4%
192222005186	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
192222005187	UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide; Region: Beta4Glucosyltransferase; cd02511
192222005188	putative metal binding site; other site
192222005189	N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase; Region: GT2_Chondriotin_Pol_N; cd06420
192222005190	Substrate binding site; other site
192222005191	metal-binding site
192222005192	HMMPfam hit to PF00535, Glycosyl transferase, score 4.7e-21
192222005193	HMMPfam hit to PF00535, Glycosyl transferase, score 9.4e-25
192222005194	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222005195	active site
192222005196	HMMPfam hit to PF00535, Glycosyl transferase, score 9.9e-28
192222005197	Capsular polysaccharide synthesis protein; Region: Caps_synth; pfam05704
192222005198	HMMPfam hit to PF05704, Capsular polysaccharide synthesis protein, score 5.2e-160
192222005199	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
192222005200	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222005201	active site
192222005202	HMMPfam hit to PF00535, Glycosyl transferase, score 5.6e-28
192222005203	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222005204	active site
192222005205	HMMPfam hit to PF00535, Glycosyl transferase, score 3.7e-39
192222005206	Alpha-2,3-sialyltransferase (CST-I); Region: CST-I; pfam06002
192222005207	HMMPfam hit to PF06002, Alpha-2,3-sialyltransferase (CST-I), score 7.4e-239
192222005208	N-acetylneuraminate synthase; Region: NeuB_NnaB; TIGR03569
192222005209	NeuB family; Region: NeuB; cl00496
192222005210	SAF domain; Region: SAF; cl00555
192222005211	HMMPfam hit to PF03102, NeuB family, score 9.2e-91
192222005212	HMMPfam hit to PF01354, Antifreeze-like domain,score 1.8e-30
192222005213	UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; Region: NeuC_NnaA; TIGR03568
192222005214	Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786
192222005215	active site
192222005216	homodimer interface [polypeptide binding]; other site
192222005217	HMMPfam hit to PF02350, UDP-N-acetylglucosamine 2-epimerase, score 5.7e-149
192222005218	Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); Region: CgtA; pfam06306
192222005219	CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety; Region: CMP-NeuAc_Synthase; cd02513
192222005220	ligand binding site; other site
192222005221	tetramer interface; other site
192222005222	HMMPfam hit to PF06306,Beta-1,4-N-acetylgalactosaminyltransfera, score 6.3e-101
192222005223	HMMPfam hit to PF02348, Cytidylyltransferase, score 9.4e-24
192222005224	Glycosyltransferase sugar-binding region containing DXD motif; Region: Gly_transf_sug; pfam04488
192222005225	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222005226	active site
192222005227	HMMPfam hit to PF00535, Glycosyl transferase, score 4.8e-39
192222005228	ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaF; COG0859
192222005229	Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from...; Region: GT1_LPS_heptosyltransferase; cd03789
192222005230	putative active site [active]
192222005231	HMMPfam hit to PF01075, Glycosyltransferase family,score 6.3e-22
192222005232	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
192222005233	dimer interface [polypeptide binding]; other site
192222005234	active site
192222005235	HMMPfam hit to PF01380, SIS domain, score 2.5e-19
192222005236	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005237	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]; Region: RfaE; COG2870
192222005238	RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer...; Region: RfaE_like; cd01172
192222005239	putative ribose interaction site [chemical binding]; other site
192222005240	putative ADP binding site [chemical binding]; other site
192222005241	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222005242	active site
192222005243	nucleotide binding site [chemical binding]; other site
192222005244	HIGH motif; other site
192222005245	KMSKS motif; other site
192222005246	HMMPfam hit to PF01467, Cytidylyltransferase, score 4.7e-19
192222005247	HMMPfam hit to PF00294, pfkB family carbohydrate kinase, score 7.8e-26
192222005248	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005249	ADP-L-glycero-D-manno-heptose-6-epimerase; Region: heptose_epim; TIGR02197
192222005250	NAD(P) binding site [chemical binding]; other site
192222005251	active site
192222005252	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 1.5e-14
192222005253	Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]; Region: HisB; COG0241
192222005254	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222005255	active site
192222005256	motif I; other site
192222005257	motif II; other site
192222005258	Cytochrome c; Region: Cytochrom_C; cl11414
192222005259	1 probable transmembrane helix predicted for Cj1153 by TMHMM2.0 at aa 4-26
192222005260	HMMPfam hit to PF00034, Cytochrome c, score 5.8e-09
192222005261	PS00190 Cytochrome c family heme-binding site signature
192222005262	Cytochrome oxidase maturation protein cbb3-type; Region: CcoS; cl01253
192222005263	HMMPfam hit to PF03597, Cytochrome oxidase maturation protein cbb3-t, score 4.7e-21
192222005264	1 probable transmembrane helix predicted for Cj1154c by TMHMM2.0 at aa 5-27
192222005265	Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor...; Region: Ribosomal_L24e_L24; cl00909
192222005266	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
192222005267	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cl00207
192222005268	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
192222005269	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222005270	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.8e-17
192222005271	PS01229 Hypothetical cof family signature 2
192222005272	HMMPfam hit to PF00122, E1-E2 ATPase, score 1.2e-42
192222005273	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005274	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 0.031
192222005275	transcription termination factor Rho; Provisional; Region: rho; PRK09376
192222005276	Rho termination factor, N-terminal domain; Region: Rho_N; cl06505
192222005277	Rho_CSD: Rho protein cold-shock domain (CSD). Rho protein is a transcription termination factor in most bacteria. In bacteria, there are two distinct mechanisms for mRNA transcription termination. In intrinsic termination, RNA polymerase and nascent mRNA...; Region: Rho_CSD; cd04459
192222005278	RNA binding site [nucleotide binding]; other site
192222005279	Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the...; Region: rho_factor; cd01128
192222005280	multimer interface [polypeptide binding]; other site
192222005281	Walker A motif; other site
192222005282	ATP binding site [chemical binding]; other site
192222005283	Walker B motif; other site
192222005284	HMMPfam hit to PF07498, Rho termination factor,N-terminal domai, score 4.9e-18
192222005285	HMMPfam hit to PF07497, Rho termination factor,RNA-binding doma, score 2.5e-47
192222005286	HMMPfam hit to PF00006, ATP synthase alpha/beta family, nucleoti, score 4.3e-68
192222005287	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005288	DNA polymerase III subunits gamma and tau; Validated; Region: PRK08451
192222005289	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222005290	Walker A motif; other site
192222005291	ATP binding site [chemical binding]; other site
192222005292	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222005293	Walker B motif; other site
192222005294	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 3.1e-07
192222005295	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005296	Predicted small integral membrane protein (DUF2165); Region: DUF2165; cl02290
192222005297	Predicted small integral membrane protein (DUF2165); Region: DUF2165; cl02290
192222005298	1 probable transmembrane helix predicted for Cj1159c by TMHMM2.0 at aa 7-28
192222005299	Predicted small integral membrane protein (DUF2165); Region: DUF2165; cl02290
192222005300	1 probable transmembrane helix predicted for Cj1160c by TMHMM2.0 at aa 13-35
192222005301	Cation transport ATPase [Inorganic ion transport and metabolism]; Region: ZntA; COG2217
192222005302	Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain...; Region: HMA; cd00371
192222005303	metal-binding site [ion binding]
192222005304	E1-E2 ATPase; Region: E1-E2_ATPase; pfam00122
192222005305	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222005306	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2.3e-14
192222005307	PS00154 E1-E2 ATPases phosphorylation site
192222005308	HMMPfam hit to PF00122, E1-E2 ATPase, score 1.5e-61
192222005309	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005310	HMMPfam hit to PF00403, Heavy-metal-associated domain, score 0.00017
192222005311	Cation efflux family; Region: Cation_efflux; cl00316
192222005312	HMMPfam hit to PF01545, Cation efflux family, score 1.3e-97
192222005313	Transcription factor zinc-finger; Region: zf-TFIIB; cl01565
192222005314	Protein of unknown function (DUF1212); Region: DUF1212; cl01118
192222005315	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005316	Uncharacterized conserved protein [Function unknown]; Region: COG2966
192222005317	Protein of unknown function (DUF1212); Region: DUF1212; cl01118
192222005318	HMMPfam hit to PF06738, Protein of unknown function (DUF1212), score 9.3e-61
192222005319	Malate/lactate dehydrogenases [Energy production and conversion]; Region: Mdh; COG0039
192222005320	L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases; Region: HicDH_like; cd05291
192222005321	NAD binding site [chemical binding]; other site
192222005322	dimer interface [polypeptide binding]; other site
192222005323	tetramer (dimer of dimers) interface [polypeptide binding]; other site
192222005324	substrate binding site [chemical binding]; other site
192222005325	HMMPfam hit to PF00056, lactate/malate dehydrogenase, NAD binding do, score 2.2e-21
192222005326	HMMPfam hit to PF02866, lactate/malate dehydrogenase, alpha/beta C-t, score 7.5e-40
192222005327	PS00064 L-lactate dehydrogenase active site
192222005328	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
192222005329	HMMPfam hit to PF00597, DedA family, score 7.9e-14
192222005330	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222005331	Protein of unknown function (DUF3373); Region: DUF3373; pfam11853
192222005332	cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the...; Region: cyclophilin; cd00317
192222005333	active site
192222005334	HMMPfam hit to PF00160, Cyclophilin type peptidyl-prolyl cis-tr, score 7.2e-55
192222005335	PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature
192222005336	Transcriptional regulator; Region: Transcrip_reg; cl00361
192222005337	HMMPfam hit to PF01709, Domain of unknown function DUF28, score 2.1e-118
192222005338	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
192222005339	4 probable transmembrane helices predicted for Cj1173 by TMHMM2.0 at aa 7-29, 34-53, 62-84 and 89-111
192222005340	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 8.6e-17
192222005341	Small Multidrug Resistance protein; Region: Multi_Drug_Res; cl00910
192222005342	HMMPfam hit to PF00893, Small Multidrug Resistance protein, score 1.5e-21
192222005343	4 probable transmembrane helices predicted for Cj1174 by TMHMM2.0 at aa 2-20, 30-48, 55-77 and 82-101
192222005344	arginyl-tRNA synthetase; Reviewed; Region: argS; PRK01611
192222005345	Arginyl tRNA synthetase N terminal domain; Region: Arg_tRNA_synt_N; cl04104
192222005346	catalytic core domain of arginyl-tRNA synthetases; Region: ArgRS_core; cd00671
192222005347	active site
192222005348	HIGH motif; other site
192222005349	KMSK motif region; other site
192222005350	Anticodon-binding domain of arginyl tRNA synthetases; Region: Anticodon_Ia_Arg; cd07956
192222005351	tRNA binding surface [nucleotide binding]; other site
192222005352	anticodon binding site; other site
192222005353	HMMPfam hit to PF05746, DALR anticodon binding domain, score 9e-34
192222005354	HMMPfam hit to PF00750, tRNA synthetases class I (R), score 4.9e-73
192222005355	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222005356	HMMPfam hit to PF03485, Arginyl tRNA synthetase N terminal do, score 1.6e-26
192222005357	mttA/Hcf106 family; Region: MttA_Hcf106; cl00788
192222005358	HMMPfam hit to PF02416, mttA/Hcf106 family, score 3.9e-19
192222005359	1 probable transmembrane helix predicted for Cj1176c by TMHMM2.0 at aa 4-23
192222005360	Guanylate kinase [Nucleotide transport and metabolism]; Region: Gmk; COG0194
192222005361	Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine...; Region: GMPK; cd00071
192222005362	catalytic site [active]
192222005363	G-X2-G-X-G-K; other site
192222005364	HMMPfam hit to PF00625, Guanylate kinase, score 2.1e-36
192222005365	PS00856 Guanylate kinase signature
192222005366	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005367	Bacterial export proteins, family 1; Region: Bac_export_1; cl00734
192222005368	HMMPfam hit to PF01311, Bacterial export proteins,family, score 9e-53
192222005369	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
192222005370	This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255
192222005371	Walker A/P-loop; other site
192222005372	ATP binding site [chemical binding]; other site
192222005373	Q-loop/lid; other site
192222005374	ABC transporter signature motif; other site
192222005375	Walker B; other site
192222005376	D-loop; other site
192222005377	H-loop/switch region; other site
192222005378	HMMPfam hit to PF00005, ABC transporter, score 5.1e-46
192222005379	PS00211 ABC transporters family signature
192222005380	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005381	elongation factor Ts; Provisional; Region: tsf; PRK09377
192222005382	Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been...; Region: UBA; cl00153
192222005383	Elongation factor TS; Region: EF_TS; pfam00889
192222005384	Elongation factor TS; Region: EF_TS; pfam00889
192222005385	HMMPfam hit to PF00889, Elongation factor TS, score 2.1e-78
192222005386	PS01127 Elongation factor Ts signature 2
192222005387	HMMPfam hit to PF00627, UBA/TS-N domain, score 3e-11
192222005388	PS01126 Elongation factor Ts signature 1
192222005389	Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of...; Region: RPS2; cd01425
192222005390	rRNA interaction site [nucleotide binding]; other site
192222005391	S8 interaction site; other site
192222005392	putative laminin-1 binding site; other site
192222005393	HMMPfam hit to PF00318, Ribosomal protein S2, score 1.3e-104
192222005394	PS00963 Ribosomal protein S2 signature 2
192222005395	PS00962 Ribosomal protein S2 signature 1
192222005396	Mycolic acid cyclopropane synthetase; Region: CMAS; pfam02353
192222005397	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222005398	S-adenosylmethionine binding site [chemical binding]; other site
192222005399	HMMPfam hit to PF02353,Cyclopropane-fatty-acyl-phospholipid synthas, score 7.3e-83
192222005400	Cytochrome c1 [Energy production and conversion]; Region: CYT1; COG2857
192222005401	Cytochrome c; Region: Cytochrom_C; cl11414
192222005402	HMMPfam hit to PF00034, Cytochrome c, score 0.0076
192222005403	PS00228 Tubulin-beta mRNA autoregulation signal
192222005404	Cytochrome b subunit of the bc complex [Energy production and conversion]; Region: QcrB; COG1290
192222005405	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cd00284
192222005406	intrachain domain interface; other site
192222005407	interchain domain interface [polypeptide binding]; other site
192222005408	heme bH binding site [chemical binding]; other site
192222005409	Qi binding site; other site
192222005410	heme bL binding site [chemical binding]; other site
192222005411	Qo binding site; other site
192222005412	Cytochrome b(C-terminus)/b6/petD:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: cytochrome_b_C; cl00193
192222005413	interchain domain interface [polypeptide binding]; other site
192222005414	intrachain domain interface; other site
192222005415	Qi binding site; other site
192222005416	Qo binding site; other site
192222005417	HMMPfam hit to PF00032, Cytochrome b(C-terminal)/b6/petD, score 2.5e-06
192222005418	PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide
192222005419	PS00193 Cytochrome b/b6 Qo site signature
192222005420	HMMPfam hit to PF00033, Cytochrome b(N-terminal)/b6/petB, score 2.9e-61
192222005421	Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including...; Region: Rieske_cytochrome_bc1; cd03470
192222005422	[2Fe-2S] cluster binding site [ion binding]; other site
192222005423	HMMPfam hit to PF00355, Rieske [2Fe-2S] domain,score 7.4e-08
192222005424	PS00199 Rieske iron-sulfur protein signature 1
192222005425	1 probable transmembrane helix predicted for Cj1186c by TMHMM2.0 at aa 10-29
192222005426	arsenical pump membrane protein; Provisional; Region: PRK15445
192222005427	Anion permease ArsB.  These permeases have been shown to export arsenate and antimonite in eubacteria and archaea.  A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a...; Region: ArsB_permease; cd01118
192222005428	transmembrane helices; other site
192222005429	HMMPfam hit to PF02040, Arsenical pump membrane protein, score 7.3e-69
192222005430	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated; Region: PRK05192
192222005431	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005432	GidA associated domain 3; Region: GIDA_assoc_3; pfam13932
192222005433	HMMPfam hit to PF01134, Glucose inhibited division protein A, score 4e-226
192222005434	PS01280 Glucose inhibited division protein A family signature 1
192222005435	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
192222005436	PAS domain; Region: PAS_9; pfam13426
192222005437	putative active site [active]
192222005438	heme pocket [chemical binding]; other site
192222005439	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222005440	dimer interface [polypeptide binding]; other site
192222005441	putative CheW interface [polypeptide binding]; other site
192222005442	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 2.6e-19
192222005443	1 probable transmembrane helix predicted for Cj1190c by TMHMM2.0 at aa 7-41
192222005444	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
192222005445	PAS domain; Region: PAS_9; pfam13426
192222005446	putative active site [active]
192222005447	heme pocket [chemical binding]; other site
192222005448	Sodium:dicarboxylate symporter family; Region: SDF; cl00573
192222005449	Na+/H+-dicarboxylate symporters [Energy production and conversion]; Region: GltP; COG1301
192222005450	8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41, 56-78, 91-113, 168-187,210-232, 242-264, 351-373 and 388-407
192222005451	HMMPfam hit to PF00375, Sodium:dicarboxylate symporter family, score 3.4e-93
192222005452	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005453	Protein of unknown function (DUF3442); Region: DUF3442; pfam11924
192222005454	Phosphate transporter family; Region: PHO4; cl00396
192222005455	Phosphate transporter family; Region: PHO4; cl00396
192222005456	13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27, 32-51, 72-89, 109-128,133-155, 175-197, 276-298, 313-334, 346-368, 388-410,423-445, 449-468 and 480-502
192222005457	HMMPfam hit to PF01384, Phosphate transporter family, score 9.5e-139
192222005458	Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281
192222005459	dihydroorotase; Provisional; Region: PRK08417
192222005460	Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C; Region: DHOase_IIa; cd01317
192222005461	active site
192222005462	HMMPfam hit to PF01979, Amidohydrolase family,score 0.096
192222005463	PS00018 EF-hand calcium-binding domain
192222005464	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated; Region: gpsA; PRK00094
192222005465	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005466	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; Region: NAD_Gly3P_dh_C; pfam07479
192222005467	HMMPfam hit to PF07479, NAD-dependent glycerol-3-phosphate deh, score 6.7e-64
192222005468	HMMPfam hit to PF01210, NAD-dependent glycerol-3-phosphate deh, score 2.4e-14
192222005469	aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated; Region: gatB; PRK05477
192222005470	GatB/GatE catalytic domain; Region: GatB_N; pfam02934
192222005471	GatB domain; Region: GatB_Yqey; cl11497
192222005472	HMMPfam hit to PF02637, GatB/Yqey domain, score 2.1e-54
192222005473	HMMPfam hit to PF01162, PET112 family, C terminal region, score 5e-24
192222005474	HMMPfam hit to PF02934, PET112 family, N terminal region, score 7.9e-155
192222005475	PS01234 PET112 family signature
192222005476	S-Ribosylhomocysteinase (LuxS); Region: LuxS; cl00802
192222005477	HMMPfam hit to PF02664, S-Ribosylhomocysteinase (LuxS), score 2.5e-98
192222005478	Isopenicillin N synthase and related dioxygenases [General function prediction only]; Region: PcbC; COG3491
192222005479	non-haem dioxygenase in morphine synthesis N-terminal; Region: DIOX_N; cl14733
192222005480	2OG-Fe(II) oxygenase superfamily; Region: 2OG-FeII_Oxy; cl15773
192222005481	HMMPfam hit to PF03171, 2OG-Fe(II) oxygenase superfamily, score 1.9e-25
192222005482	NMT1-like family; Region: NMT1_2; cl15260
192222005483	HMMPfam hit to PF03180, NLPA lipoprotein, score 3.8e-131
192222005484	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222
192222005485	CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_N_terminal_like; cd03312
192222005486	THF binding site; other site
192222005487	CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme...; Region: CIMS_C_terminal_like; cd03311
192222005488	substrate binding site [chemical binding]; other site
192222005489	THF binding site; other site
192222005490	zinc-binding site [ion binding]; other site
192222005491	HMMPfam hit to PF01717, Methionine synthase,vitamin-B12 inde, score 6.4e-187
192222005492	Methylenetetrahydrofolate reductase; Region: MTHFR; pfam02219
192222005493	Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase...; Region: MTHFR; cd00537
192222005494	FAD binding site [chemical binding]; other site
192222005495	HMMPfam hit to PF02219, Methylenetetrahydrofolate reductase, score 3.9e-72
192222005496	ATP synthase A chain; Region: ATP-synt_A; cl00413
192222005497	HMMPfam hit to PF00119, ATP synthase A chain, score 1.5e-29
192222005498	PS00449 ATP synthase a subunit signature
192222005499	DNA repair protein RadA; Provisional; Region: PRK11823
192222005500	Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of...; Region: Sms; cd01121
192222005501	Walker A motif/ATP binding site; other site
192222005502	ATP binding site [chemical binding]; other site
192222005503	Walker B motif; other site
192222005504	Subunit ChlI of Mg-chelatase; Region: ChlI; cl12214
192222005505	HMMPfam hit to PF03796, DnaB-like helicase C terminal domain, score 0.00015
192222005506	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005507	signal recognition particle-docking protein FtsY; Provisional; Region: PRK10416
192222005508	SRP54-type protein, helical bundle domain; Region: SRP54_N; cl03758
192222005509	The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The...; Region: SRP; cd03115
192222005510	P loop; other site
192222005511	GTP binding site [chemical binding]; other site
192222005512	HMMPfam hit to PF00448, SRP54-type protein, GTPase domain, score 1.4e-102
192222005513	PS00300 SRP54-type proteins GTP-binding domain signature
192222005514	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005515	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
192222005516	catalytic residues [active]
192222005517	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005518	5-formyltetrahydrofolate cyclo-ligase family; Region: 5-FTHF_cyc-lig; cl00360
192222005519	phosphodiesterase; Provisional; Region: PRK12704
192222005520	K homology RNA-binding domain, type I.  KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that...; Region: KH-I; cl00098
192222005521	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076
192222005522	1 probable transmembrane helix predicted for Cj1209 by TMHMM2.0 at aa 5-22
192222005523	HMMPfam hit to PF00013, KH domain, score 3.5e-05
192222005524	HMMPfam hit to PF01966, HD domain, score 7.9e-20
192222005525	SNARE associated Golgi protein; Region: SNARE_assoc; cl00429
192222005526	4 probable transmembrane helices predicted for Cj1210 by TMHMM2.0 at aa 13-35, 45-67, 124-146 and 161-180
192222005527	HMMPfam hit to PF00597, DedA family, score 2.4e-05
192222005528	9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37, 176-198, 213-235, 242-264,274-294, 307-329, 334-356, 369-391 and 401-418
192222005529	HMMPfam hit to PF03772, Competence protein, score 5.4e-67
192222005530	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005531	Virulence factor BrkB; Region: Virul_fac_BrkB; cl07918
192222005532	HMMPfam hit to PF03631, Ribonuclease BN-like family, score 1.1e-66
192222005533	FAD binding domain; Region: FAD_binding_4; pfam01565
192222005534	glycolate oxidase, subunit GlcD; Region: glcD; TIGR00387
192222005535	HMMPfam hit to PF02913, FAD linked oxidases,C-terminal domain, score 1.4e-99
192222005536	HMMPfam hit to PF01565, FAD binding domain, score 3.5e-71
192222005537	Peptidase family M23; Region: Peptidase_M23; pfam01551
192222005538	HMMPfam hit to PF01551, Peptidase family M23, score 3.6e-53
192222005539	Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism]; Region: yfiH; COG1496
192222005540	Multi-copper polyphenol oxidoreductase laccase; Region: Cu-oxidase_4; cl00650
192222005541	HMMPfam hit to PF02578, Uncharacterised ACR, YfiH family COG1496, score 2.3e-21
192222005542	riboflavin synthase subunit alpha; Provisional; Region: PRK09289
192222005543	Lumazine binding domain; Region: Lum_binding; pfam00677
192222005544	Lumazine binding domain; Region: Lum_binding; pfam00677
192222005545	HMMPfam hit to PF00677, Lumazine binding domain,score 2.3e-25
192222005546	1 probable transmembrane helix predicted for Cj1219c by TMHMM2.0 at aa 5-27
192222005547	Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It...; Region: cpn10; cd00320
192222005548	oligomerisation interface [polypeptide binding]; other site
192222005549	mobile loop; other site
192222005550	roof hairpin; other site
192222005551	HMMPfam hit to PF00166, Chaperonin 10 Kd subunit,score 5.4e-35
192222005552	chaperonin GroEL; Reviewed; Region: groEL; PRK12849
192222005553	GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found...; Region: GroEL; cd03344
192222005554	ring oligomerisation interface [polypeptide binding]; other site
192222005555	ATP/Mg binding site [chemical binding]; other site
192222005556	stacking interactions; other site
192222005557	hinge regions; other site
192222005558	HMMPfam hit to PF00118, TCP-1/cpn60 chaperonin family, score 5.5e-196
192222005559	PS00296 Chaperonins cpn60 signature
192222005560	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
192222005561	dimer interface [polypeptide binding]; other site
192222005562	phosphorylation site [posttranslational modification]
192222005563	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222005564	ATP binding site [chemical binding]; other site
192222005565	Mg2+ binding site [ion binding]; other site
192222005566	G-X-G motif; other site
192222005567	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 6e-20
192222005568	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 9.6e-05
192222005569	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222005570	active site
192222005571	phosphorylation site [posttranslational modification]
192222005572	intermolecular recognition site; other site
192222005573	dimerization interface [polypeptide binding]; other site
192222005574	Helix-turn-helix domains; Region: HTH; cl00088
192222005575	DNA binding site [nucleotide binding]
192222005576	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 2.7e-18
192222005577	HMMPfam hit to PF00072, Response regulator receiver domain, score 3e-25
192222005578	Hemerythrin (Hr) is a non-heme diiron oxygen transport protein found in four marine invertebrate phyla including priapulida, brachiopoda, sipunculida, and annelida, as well as in protozoa. Myohemerythrin (Mhr), a hemerythrin homolog, is found in the...; Region: Hemerythrin; cl15774
192222005579	octamerization interface [polypeptide binding]; other site
192222005580	diferric-oxygen binding site [ion binding]; other site
192222005581	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 1.1e-05
192222005582	HMMPfam hit to PF01814, Hemerythrin HHE cation binding domain, score 0.00038
192222005583	Ribbon-helix-helix domain; Region: RHH_3; pfam12651
192222005584	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
192222005585	dimer interface [polypeptide binding]; other site
192222005586	phosphorylation site [posttranslational modification]
192222005587	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222005588	ATP binding site [chemical binding]; other site
192222005589	Mg2+ binding site [ion binding]; other site
192222005590	G-X-G motif; other site
192222005591	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3.2e-07
192222005592	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 3.7e-05
192222005593	HMMPfam hit to PF00672, HAMP domain, score 7.2e-08
192222005594	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
192222005595	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222005596	active site
192222005597	phosphorylation site [posttranslational modification]
192222005598	intermolecular recognition site; other site
192222005599	dimerization interface [polypeptide binding]; other site
192222005600	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
192222005601	DNA binding site [nucleotide binding]
192222005602	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 6.9e-19
192222005603	HMMPfam hit to PF00072, Response regulator receiver domain, score 2.9e-31
192222005604	periplasmic serine protease, Do/DeqQ family; Region: degP_htrA_DO; TIGR02037
192222005605	Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad...; Region: Tryp_SPc; cl00149
192222005606	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
192222005607	protein binding site [polypeptide binding]; other site
192222005608	PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind...; Region: PDZ_serine_protease; cd00987
192222005609	protein binding site [polypeptide binding]; other site
192222005610	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 0.03
192222005611	HMMPfam hit to PF00595, PDZ domain (Also known as DHR or GLGF), score 1.7e-08
192222005612	HMMPfam hit to PF00089, Trypsin, score 1.2e-20
192222005613	chaperone protein DnaJ; Provisional; Region: PRK14299
192222005614	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
192222005615	HSP70 interaction site [polypeptide binding]; other site
192222005616	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
192222005617	substrate binding site [polypeptide binding]; other site
192222005618	dimer interface [polypeptide binding]; other site
192222005619	HMMPfam hit to PF00226, DnaJ domain, score 1.2e-40
192222005620	PS00636 Nt-dnaJ domain signature
192222005621	HMMPfam hit to PF01556, DnaJ C terminal region,score 6.2e-22
192222005622	Helix-Turn-Helix DNA binding domain of the HspR transcription regulator; Region: HTH_HspR; cd04766
192222005623	MerR HTH family regulatory protein; Region: MerR_1; pfam13411
192222005624	DNA binding residues [nucleotide binding]
192222005625	putative dimer interface [polypeptide binding]; other site
192222005626	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.4e-07
192222005627	PS00552 Bacterial regulatory proteins, merR family signature
192222005628	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
192222005629	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
192222005630	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005631	13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22, 29-48, 52-71, 83-105,115-133, 146-168, 178-200, 207-229, 233-250, 262-281,291-313, 320-342 and 352-374
192222005632	HMMPfam hit to PF02254, TrkA-N domain, score 5.9e-08
192222005633	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
192222005634	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222005635	motif II; other site
192222005636	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 4.5e-18
192222005637	glycyl-tRNA synthetase subunit beta; Validated; Region: glyS; PRK01233
192222005638	HMMPfam hit to PF02092, Glycyl-tRNA synthetase beta subunit, score 6.5e-195
192222005639	Peptidase family M23; Region: Peptidase_M23; pfam01551
192222005640	HMMPfam hit to PF01551, Peptidase family M23, score 6.7e-45
192222005641	Putative S-adenosyl-L-methionine-dependent methyltransferase; Region: Methyltransf_28; pfam02636
192222005642	HMMPfam hit to PF02636, Uncharacterized ACR,COG1565, score 2.2e-05
192222005643	Ppx/GppA phosphatase family; Region: Ppx-GppA; cl15449
192222005644	HMMPfam hit to PF02541, Ppx/GppA phosphatase family, score 1.7e-06
192222005645	Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the...; Region: PNPsynthase; cd00003
192222005646	active site
192222005647	hydrophilic channel; other site
192222005648	dimerization interface [polypeptide binding]; other site
192222005649	catalytic residues [active]
192222005650	active site lid [active]
192222005651	HMMPfam hit to PF03740, Pyridoxal phosphate biosynthesis protein Pdx, score 7.6e-178
192222005652	Pyridoxal phosphate biosynthetic protein PdxA; Region: PdxA; cl00873
192222005653	4-hydroxythreonine-4-phosphate dehydrogenase; Validated; Region: pdxA; PRK03743
192222005654	HMMPfam hit to PF04166, Pyridoxal phosphate biosynthetic protein Pdx, score 1.4e-135
192222005655	Arabinose efflux permease [Carbohydrate transport and metabolism]; Region: AraJ; COG2814
192222005656	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222005657	putative substrate translocation pore; other site
192222005658	12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29, 44-66, 73-90, 100-122,129-151, 156-178, 203-225, 240-259, 268-290, 295-317,338-360 and 364-381
192222005659	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.7e-39
192222005660	Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717
192222005661	methyltransferase, MtaA/CmuA family; Region: mtaA_cmuA; TIGR01463
192222005662	substrate binding site [chemical binding]; other site
192222005663	active site
192222005664	HMMPfam hit to PF01208, Uroporphyrinogen decarboxylase (URO-D), score 2.1e-132
192222005665	PS00906 Uroporphyrinogen decarboxylase signature 1
192222005666	Fe-S oxidoreductases [Energy production and conversion]; Region: COG0731
192222005667	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222005668	FeS/SAM binding site; other site
192222005669	HMMPfam hit to PF04055, Radical SAM superfamily,score 4.1e-16
192222005670	excinuclease ABC subunit C; Validated; Region: uvrC; PRK00558
192222005671	Catalytic GIY-YIG domain of nucleotide excision repair endonucleases UvrC, Cho, and similar proteins; Region: GIY-YIG_UvrC_Cho; cd10434
192222005672	GIY-YIG motif/motif A; other site
192222005673	active site
192222005674	catalytic site [active]
192222005675	putative DNA binding site [nucleotide binding]; other site
192222005676	metal binding site [ion binding]; metal-binding site
192222005677	UvrB/uvrC motif; Region: UVR; pfam02151
192222005678	UvrC Helix-hairpin-helix N-terminal; Region: UvrC_HhH_N; pfam08459
192222005679	HMMPfam hit to PF02151, UvrB/uvrC motif, score 2.9e-08
192222005680	HMMPfam hit to PF01541, GIY-YIG catalytic domain,score 1.4e-29
192222005681	GMP synthase; Reviewed; Region: guaA; PRK00074
192222005682	Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase; Region: GATase1_GMP_Synthase; cd01742
192222005683	AMP/PPi binding site [chemical binding]; other site
192222005684	candidate oxyanion hole; other site
192222005685	catalytic triad [active]
192222005686	potential glutamine specificity residues [chemical binding]; other site
192222005687	The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched...; Region: GMP_synthase_C; cd01997
192222005688	ATP Binding subdomain [chemical binding]; other site
192222005689	Ligand Binding sites [chemical binding]; other site
192222005690	Dimerization subdomain; other site
192222005691	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 1.7e-57
192222005692	PS00442 Glutamine amidotransferases class-I active site
192222005693	HMMPfam hit to PF00958, GMP synthase C terminal domain, score 1e-65
192222005694	Chromosome segregation ATPases [Cell division and chromosome partitioning]; Region: Smc; COG1196
192222005695	phosphoribosylamine--glycine ligase; Provisional; Region: PRK00885
192222005696	Phosphoribosylglycinamide synthetase, N domain; Region: GARS_N; pfam02844
192222005697	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222005698	Phosphoribosylglycinamide synthetase, C domain; Region: GARS_C; pfam02843
192222005699	HMMPfam hit to PF02844, Phosphoribosylglycinamide synthetase, N doma, score 1.3e-23
192222005700	HMMPfam hit to PF02842, Phosphoribosylglycinamide synthetase, B doma, score 8.3e-40
192222005701	HMMPfam hit to PF01071, Phosphoribosylglycinamide synthetase, ATP-gr, score 5.4e-67
192222005702	HMMPfam hit to PF02843, Phosphoribosylglycinamide synthetase, C doma, score 4.1e-34
192222005703	RDD family; Region: RDD; cl00746
192222005704	HMMPfam hit to PF06271, RDD family, score 5.3e-39
192222005705	2 probable transmembrane helices predicted for Cj1251 by TMHMM2.0 at aa 23-42 and 62-84
192222005706	Organic solvent tolerance protein OstA [Cell envelope biogenesis, outer membrane]; Region: Imp; COG1452
192222005707	OstA-like protein; Region: OstA; cl00844
192222005708	Organic solvent tolerance protein; Region: OstA_C; pfam04453
192222005709	HMMPfam hit to PF04453, Organic solvent tolerance protein, score 6.9e-85
192222005710	polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824
192222005711	RNase PH-like 3'-5' exoribonucleases; Region: RNase_PH; cl03114
192222005712	oligomer interface [polypeptide binding]; other site
192222005713	RNA binding site [nucleotide binding]; other site
192222005714	Polyribonucleotide nucleotidyltransferase, RNA binding domain; Region: PNPase; pfam03726
192222005715	Polyribonucleotide nucleotidyltransferase, repeat 2; Region: RNase_PH_PNPase_2; cd11364
192222005716	RNase E interface [polypeptide binding]; other site
192222005717	trimer interface [polypeptide binding]; other site
192222005718	active site
192222005719	Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to...; Region: PNPase_KH; cd02393
192222005720	putative nucleic acid binding region [nucleotide binding]; other site
192222005721	G-X-X-G motif; other site
192222005722	S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain; Region: S1_like; cl09927
192222005723	RNA binding site [nucleotide binding]; other site
192222005724	HMMPfam hit to PF01138, 3' exoribonuclease family,domain, score 3.8e-27
192222005725	HMMPfam hit to PF03725, 3' exoribonuclease family,domain, score 1.7e-07
192222005726	HMMPfam hit to PF03726, Polyribonucleotide nucleotidyltransferase,, score 3.1e-25
192222005727	HMMPfam hit to PF01138, 3' exoribonuclease family,domain, score 4.7e-47
192222005728	HMMPfam hit to PF03725, 3' exoribonuclease family,domain, score 6.1e-20
192222005729	HMMPfam hit to PF00013, KH domain, score 1.6e-13
192222005730	HMMPfam hit to PF00575, S1 RNA binding domain,score 5.7e-06
192222005731	MUG-like Uracil-DNA glycosylase enzyme family; Region: UDG_MUG_like; cd10032
192222005732	putative active site [active]
192222005733	4-Oxalocrotonate Tautomerase:  Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one...; Region: 4Oxalocrotonate_Tautomerase; cd00491
192222005734	active site 1 [active]
192222005735	dimer interface [polypeptide binding]; other site
192222005736	hexamer interface [polypeptide binding]; other site
192222005737	active site 2 [active]
192222005738	HMMPfam hit to PF01361, Tautomerase enzyme, score 3.6e-27
192222005739	Protein of unknown function (DUF4230); Region: DUF4230; pfam14014
192222005740	1 probable transmembrane helix predicted for Cj1256c by TMHMM2.0 at aa 4-21
192222005741	drug efflux system protein MdtG; Provisional; Region: PRK09874
192222005742	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222005743	putative substrate translocation pore; other site
192222005744	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 9.6e-44
192222005745	Low molecular weight phosphatase family; Region: LMWPc; cd00115
192222005746	Low molecular weight phosphotyrosine protein phosphatase; Region: LMWPc; pfam01451
192222005747	active site
192222005748	HMMPfam hit to PF01451, Low molecular weight phosphotyrosine protein, score 1.8e-28
192222005749	Campylobacter major outer membrane protein; Region: Campylo_MOMP; pfam05538
192222005750	HMMPfam hit to PF05538, Campylobacter major outer membrane prote, score 0
192222005751	chaperone protein DnaJ; Provisional; Region: PRK10767
192222005752	DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257
192222005753	HSP70 interaction site [polypeptide binding]; other site
192222005754	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cl03262
192222005755	substrate binding site [polypeptide binding]; other site
192222005756	Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cd10719
192222005757	Zn binding sites [ion binding]; other site
192222005758	C-terminal substrate binding domain of DnaJ and HSP40; Region: DnaJ_C; cd10747
192222005759	dimer interface [polypeptide binding]; other site
192222005760	HMMPfam hit to PF01556, DnaJ C terminal region,score 2e-59
192222005761	HMMPfam hit to PF00684, DnaJ central domain (4 repeats), score 1.2e-22
192222005762	PS00637 CXXCXGXG dnaJ domain signature
192222005763	HMMPfam hit to PF00226, DnaJ domain, score 1.4e-39
192222005764	PS00636 Nt-dnaJ domain signature
192222005765	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
192222005766	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222005767	active site
192222005768	phosphorylation site [posttranslational modification]
192222005769	intermolecular recognition site; other site
192222005770	dimerization interface [polypeptide binding]; other site
192222005771	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
192222005772	DNA binding site [nucleotide binding]
192222005773	HMMPfam hit to PF00072, Response regulator receiver domain, score 1.5e-28
192222005774	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 1.7e-18
192222005775	adaptive-response sensory kinase; Validated; Region: PRK09303
192222005776	Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via...; Region: HisKA; cd00082
192222005777	dimer interface [polypeptide binding]; other site
192222005778	phosphorylation site [posttranslational modification]
192222005779	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222005780	ATP binding site [chemical binding]; other site
192222005781	Mg2+ binding site [ion binding]; other site
192222005782	G-X-G motif; other site
192222005783	PS00038 Myc-type, 'helix-loop-helix' dimerization domain signature
192222005784	2 probable transmembrane helices predicted for Cj1262 by TMHMM2.0 at aa 11-30 and 132-154
192222005785	HMMPfam hit to PF00672, HAMP domain, score 9.5e-06
192222005786	PS00146 Beta-lactamase class-A active site
192222005787	HMMPfam hit to PF00512, His Kinase A (phosphoacceptor) domain, score 2.9e-05
192222005788	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 3.8e-07
192222005789	recombination protein RecR; Reviewed; Region: recR; PRK00076
192222005790	RecR protein; Region: RecR; pfam02132
192222005791	TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR.  RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a...; Region: TOPRIM_recR; cd01025
192222005792	putative active site [active]
192222005793	putative metal-binding site [ion binding]; other site
192222005794	tetramer interface [polypeptide binding]; other site
192222005795	HMMPfam hit to PF02132, RecR protein, score 1.8e-13
192222005796	PS01300 RecR protein signature
192222005797	Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD...; Region: H2MP_MemB-H2up; cd06062
192222005798	putative substrate-binding site; other site
192222005799	nickel binding site [ion binding]; other site
192222005800	HMMPfam hit to PF01750, Hydrogenase maturation protease, score 2.7e-22
192222005801	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cl00859
192222005802	formate dehydrogenase, gamma subunit; Region: formate-DH-gamm; TIGR01583
192222005803	HMMPfam hit to PF01292, Cytochrome b561 family,score 2.6e-37
192222005804	PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2
192222005805	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005806	Nickel-dependent hydrogenase; Region: NiFeSe_Hases; cl00417
192222005807	HMMPfam hit to PF00374, Nickel-dependent hydrogenase, score 5.7e-256
192222005808	PS00508 Nickel-dependent hydrogenases large subunit signature 2
192222005809	PS00507 Nickel-dependent hydrogenases large subunit signature 1
192222005810	hydrogenase (NiFe) small subunit (hydA); Region: hydA; TIGR00391
192222005811	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl15792
192222005812	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 Kd sub, score 7.5e-05
192222005813	PS00024 Hemopexin domain signature
192222005814	bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed; Region: mnmC; PRK01747
192222005815	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222005816	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005817	HMMPfam hit to PF01266, FAD dependent oxidoreductase, score 2e-31
192222005818	HMMPfam hit to PF05430, Protein of unknown function (DUF752), score 4.9e-111
192222005819	AMIN domain; Region: AMIN; pfam11741
192222005820	N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]; Region: AmiC; COG0860
192222005821	N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino...; Region: MurNAc-LAA; cd02696
192222005822	active site
192222005823	metal binding site [ion binding]; metal-binding site
192222005824	HMMPfam hit to PF01520, N-acetylmuramoyl-L-alanine amidase, score 2.7e-47
192222005825	Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]; Region: COG2070
192222005826	2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase...; Region: NPD_like; cd04730
192222005827	FMN binding site [chemical binding]; other site
192222005828	substrate binding site [chemical binding]; other site
192222005829	putative catalytic residue [active]
192222005830	HMMPfam hit to PF03060, 2-nitropropane dioxygenase,score 5.8e-95
192222005831	tyrosyl-tRNA synthetase; Validated; Region: PRK05912
192222005832	catalytic core domain of tyrosinyl-tRNA synthetase; Region: TyrRS_core; cd00805
192222005833	active site
192222005834	HIGH motif; other site
192222005835	dimer interface [polypeptide binding]; other site
192222005836	KMSKS motif; other site
192222005837	HMMPfam hit to PF01479, S4 domain, score 0.0012
192222005838	HMMPfam hit to PF00579, tRNA synthetases class I (W and Y), score 8.6e-97
192222005839	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222005840	Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]; Region: SpoT; COG0317
192222005841	Metal dependent phosphohydrolases with conserved 'HD' motif; Region: HDc; cl00076
192222005842	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; Region: NT_Rel-Spo_like; cd05399
192222005843	synthetase active site [active]
192222005844	NTP binding site [chemical binding]; other site
192222005845	metal binding site [ion binding]; metal-binding site
192222005846	TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after...; Region: TGS_RelA_SpoT; cd01668
192222005847	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
192222005848	HMMPfam hit to PF01842, ACT domain, score 1.3e-06
192222005849	HMMPfam hit to PF02824, TGS domain, score 6.4e-20
192222005850	HMMPfam hit to PF04607, Region found in RelA / SpoT proteins, score 2.4e-45
192222005851	HMMPfam hit to PF01966, HD domain, score 8.1e-07
192222005852	PS00190 Cytochrome c family heme-binding site signature
192222005853	RNA polymerase Rpb6; Region: RNA_pol_Rpb6; cl14651
192222005854	HMMPfam hit to PF01192, RNA polymerase Rpb6, score 2.8e-19
192222005855	UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and...; Region: AAK_UMPK-PyrH-Ec; cd04254
192222005856	putative nucleotide binding site [chemical binding]; other site
192222005857	uridine monophosphate binding site [chemical binding]; other site
192222005858	homohexameric interface [polypeptide binding]; other site
192222005859	HMMPfam hit to PF00696, Amino acid kinase family,score 7.1e-54
192222005860	Membrane-bound metallopeptidase [Cell division and chromosome partitioning]; Region: COG4942
192222005861	Peptidase family M23; Region: Peptidase_M23; pfam01551
192222005862	HMMPfam hit to PF01551, Peptidase family M23, score 1e-18
192222005863	1 probable transmembrane helix predicted for Cj1275c by TMHMM2.0 at aa 5-24
192222005864	FtsX-like permease family; Region: FtsX; cl15850
192222005865	This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255
192222005866	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
192222005867	Walker A/P-loop; other site
192222005868	ATP binding site [chemical binding]; other site
192222005869	Q-loop/lid; other site
192222005870	ABC transporter signature motif; other site
192222005871	Walker B; other site
192222005872	D-loop; other site
192222005873	H-loop/switch region; other site
192222005874	HMMPfam hit to PF00005, ABC transporter, score 2.7e-54
192222005875	PS00211 ABC transporters family signature
192222005876	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005877	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl15754
192222005878	HMMPfam hit to PF02390,  methyltransferase,score 6.1e-37
192222005879	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cl00065
192222005880	Fibronectin type 3 domain-containing protein [General function prediction only]; Region: COG3401
192222005881	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cl00065
192222005882	HMMPfam hit to PF00041, Fibronectin type III domain, score 0.0033
192222005883	HMMPfam hit to PF00041, Fibronectin type III domain, score 0.0079
192222005884	HMMPfam hit to PF00041, Fibronectin type III domain, score 0.0037
192222005885	HMMPfam hit to PF00041, Fibronectin type III domain, score 0.0015
192222005886	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005887	Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]; Region: RluA; COG0564
192222005888	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
192222005889	RNA binding surface [nucleotide binding]; other site
192222005890	PseudoU_synth_RsuA/RluD: Pseudouridine synthase, RsuA/RluD family. This group is comprised of eukaryotic, bacterial and archeal proteins similar to eight site specific Escherichia coli pseudouridine synthases: RsuA, RluA, RluB, RluC, RluD, RluE, RluF and...; Region: PseudoU_synth_RluCD_like; cd02869
192222005891	active site
192222005892	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 4e-45
192222005893	PS01129 Rlu family of pseudouridine synthase signature
192222005894	HMMPfam hit to PF01479, S4 domain, score 4.3e-11
192222005895	Cell cycle protein; Region: FTSW_RODA_SPOVE; cl00511
192222005896	HMMPfam hit to PF01098, Cell cycle protein, score 1.9e-95
192222005897	9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37, 44-61, 65-87, 138-153,158-177, 182-201, 265-287, 300-322 and 332-354
192222005898	potassium uptake protein, TrkH family; Region: 2a38; TIGR00933
192222005899	Cation transport protein; Region: TrkH; cl10514
192222005900	11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32, 42-59, 72-94, 127-149,156-175, 190-212, 225-247, 290-324, 345-367, 382-404 and 409-430
192222005901	HMMPfam hit to PF02386, Cation transport protein,score 7.5e-81
192222005902	K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]; Region: TrkA; COG0569
192222005903	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222005904	HMMPfam hit to PF02254, TrkA-N domain, score 1.4e-30
192222005905	HMMPfam hit to PF02080, TrkA-C domain, score 3.7e-05
192222005906	NMT1-like family; Region: NMT1_2; cl15260
192222005907	Predicted periplasmic solute-binding protein [General function prediction only]; Region: COG1427
192222005908	HMMPfam hit to PF02621, Uncharacterized ACR,COG1427, score 3.5e-26
192222005909	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222005910	active site
192222005911	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 6e-05
192222005912	Malic enzyme, N-terminal domain; Region: malic; pfam00390
192222005913	NAD(P) binding domain of malic enzyme (ME), subgroup 2; Region: NAD_bind_2_malic_enz; cd05311
192222005914	putative NAD(P) binding site [chemical binding]; other site
192222005915	HMMPfam hit to PF03949, Malic enzyme, NAD binding domain, score 4.5e-126
192222005916	HMMPfam hit to PF00390, Malic enzyme, N-terminal domain, score 1.6e-74
192222005917	glutamyl-tRNA synthetase; Reviewed; Region: gltX; PRK01406
192222005918	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
192222005919	active site
192222005920	HIGH motif; other site
192222005921	catalytic core domain of discriminating glutamyl-tRNA synthetase; Region: GluRS_core; cd00808
192222005922	active site
192222005923	KMSKS motif; other site
192222005924	HMMPfam hit to PF00749, tRNA synthetases class I (E and Q), cata, score 7.3e-141
192222005925	PS00178 Aminoacyl-transfer RNA synthetases class-I signature
192222005926	SurA N-terminal domain; Region: SurA_N_3; cl07813
192222005927	PPIC-type PPIASE domain; Region: Rotamase; cl08278
192222005928	1 probable transmembrane helix predicted for Cj1289 by TMHMM2.0 at aa 5-27
192222005929	biotin carboxylase; Validated; Region: PRK08462
192222005930	Carbamoyl-phosphate synthase L chain, N-terminal domain; Region: CPSase_L_chain; pfam00289
192222005931	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222005932	Biotin carboxylase C-terminal domain; Region: Biotin_carb_C; cl08365
192222005933	HMMPfam hit to PF02785, Biotin carboxylase C-terminal domain, score 2.5e-57
192222005934	HMMPfam hit to PF02786, Carbamoyl-phosphate synthase L chain,, score 3.4e-108
192222005935	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
192222005936	PS00866 Carbamoyl-phosphate synthase subdomain signature 1
192222005937	HMMPfam hit to PF00289, Carbamoyl-phosphate synthase L chain,, score 1.6e-46
192222005938	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated; Region: PRK06302
192222005939	The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase; Region: biotinyl_domain; cd06850
192222005940	carboxyltransferase (CT) interaction site; other site
192222005941	biotinylation site [posttranslational modification]; other site
192222005942	HMMPfam hit to PF00364, Biotin-requiring enzyme,score 9e-27
192222005943	PS01039 Bacterial extracellular solute-binding proteins, family 3 signature
192222005944	Trimeric dUTP diphosphatases; Region: trimeric_dUTPase; cd07557
192222005945	trimer interface [polypeptide binding]; other site
192222005946	active site
192222005947	HMMPfam hit to PF00692, dUTPase, score 0.00019
192222005948	UDP-N-acetylglucosamine 4,6-dehydratase; Region: PseB; TIGR03589
192222005949	UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs; Region: UDP_invert_4-6DH_SDR_e; cd05237
192222005950	NAD(P) binding site [chemical binding]; other site
192222005951	homodimer interface [polypeptide binding]; other site
192222005952	substrate binding site [chemical binding]; other site
192222005953	active site
192222005954	HMMPfam hit to PF02719, Polysaccharide biosynthesis protein, score 7e-09
192222005955	PS00017 ATP/GTP-binding site motif A (P-loop)
192222005956	Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WecE; COG0399
192222005957	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
192222005958	inhibitor-cofactor binding pocket; inhibition site
192222005959	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222005960	catalytic residue [active]
192222005961	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 4.6e-110
192222005962	Domain of unknown function (DUF2172); Region: DUF2172; pfam09940
192222005963	Aminoglycoside 3-N-acetyltransferase; Region: Antibiotic_NAT; cl01051
192222005964	Aminoglycoside 3-N-acetyltransferase; Region: Antibiotic_NAT; cl01051
192222005965	Aminoglycoside 3-N-acetyltransferase; Region: Antibiotic_NAT; cl01051
192222005966	Phosphopantetheine attachment site; Region: PP-binding; cl09936
192222005967	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222005968	S-adenosylmethionine binding site [chemical binding]; other site
192222005969	Methylmalonyl-CoA epimerase (MMCE); Region: MMCE; cd07249
192222005970	dimer interface [polypeptide binding]; other site
192222005971	substrate binding site [chemical binding]; other site
192222005972	metal binding site [ion binding]; metal-binding site
192222005973	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005974	Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]; Region: FkbH; COG3882
192222005975	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222005976	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222005977	3-oxoacyl-(acyl carrier protein) synthase III; Reviewed; Region: PRK12880
192222005978	Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl...; Region: KAS_III; cd00830
192222005979	dimer interface [polypeptide binding]; other site
192222005980	active site
192222005981	CoA binding pocket [chemical binding]; other site
192222005982	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222005983	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222005984	D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional; Region: PRK04813
192222005985	AMP-binding enzyme; Region: AMP-binding; cl15778
192222005986	HMMPfam hit to PF00501, AMP-binding enzyme, score 1.4e-85
192222005987	PS00455  AMP-binding domain signature
192222005988	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222005989	CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety; Region: CMP-NeuAc_Synthase; cd02513
192222005990	ligand binding site; other site
192222005991	tetramer interface; other site
192222005992	HMMPfam hit to PF02348, Cytidylyltransferase, score 2e-25
192222005993	Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]; Region: spsG; COG3980
192222005994	pseudaminic acid biosynthesis N-acetyl transferase; Region: PseH; TIGR03585
192222005995	N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cl00357
192222005996	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.3e-10
192222005997	imidazole glycerol phosphate synthase subunit HisF; Provisional; Region: PRK01033
192222005998	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
192222005999	substrate binding site [chemical binding]; other site
192222006000	glutamase interaction surface [polypeptide binding]; other site
192222006001	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 1.2e-71
192222006002	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13152
192222006003	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
192222006004	putative active site [active]
192222006005	oxyanion strand; other site
192222006006	catalytic triad [active]
192222006007	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 1.6e-38
192222006008	HMMPfam hit to PF01174, SNO glutamine amidotransferase family, score 0.0029
192222006009	PS00442 Glutamine amidotransferases class-I active site
192222006010	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
192222006011	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_III; cd01996
192222006012	Ligand Binding Site [chemical binding]; other site
192222006013	PS00294 Prenyl group binding site (CAAX box)
192222006014	PS00761 Signal peptidases I signature 3
192222006015	pseudaminic acid synthase; Region: PseI; TIGR03586
192222006016	NeuB family; Region: NeuB; cl00496
192222006017	SAF domain; Region: SAF; cl00555
192222006018	HMMPfam hit to PF03102, NeuB family, score 2.3e-103
192222006019	HMMPfam hit to PF01354, Antifreeze-like domain,score 5.4e-28
192222006020	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006021	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 4.6e-79
192222006022	Arna decarboxylase_like, extended (e) SDRs; Region: Arna_like_SDR_e; cd05257
192222006023	NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family; Region: EDH_00030; TIGR04180
192222006024	NAD binding site [chemical binding]; other site
192222006025	substrate binding site [chemical binding]; other site
192222006026	active site
192222006027	HMMPfam hit to PF01370, NAD dependent epimerase/dehydratase family, score 5e-63
192222006028	aminotransferase, LLPSF_NHT_00031 family; Region: NHT_00031; TIGR04181
192222006029	3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary...; Region: AHBA_syn; cd00616
192222006030	inhibitor-cofactor binding pocket; inhibition site
192222006031	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222006032	catalytic residue [active]
192222006033	HMMPfam hit to PF01041, DegT/DnrJ/EryC1/StrS aminotransferase, score 1.3e-71
192222006034	Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing...; Region: LbH_AT_putative; cd03360
192222006035	putative trimer interface [polypeptide binding]; other site
192222006036	putative CoA binding site [chemical binding]; other site
192222006037	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 0.66
192222006038	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 7.8
192222006039	HMMPfam hit to PF00132, Bacterial transferase hexapeptide (three rep, score 31
192222006040	3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]; Region: FadB; COG1250
192222006041	tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]; Region: MesJ; COG0037
192222006042	This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily  includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which  binds to Adenosine group.  This subfamily; Region: Alpha_ANH_like_III; cd01996
192222006043	Ligand Binding Site [chemical binding]; other site
192222006044	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222006045	S-adenosylmethionine binding site [chemical binding]; other site
192222006046	N-acetylneuraminate synthase; Region: NeuB_NnaB; TIGR03569
192222006047	NeuB family; Region: NeuB; cl00496
192222006048	SAF domain; Region: SAF; cl00555
192222006049	HMMPfam hit to PF03102, NeuB family, score 1.8e-121
192222006050	PS00141 Eukaryotic and viral aspartyl proteases active site
192222006051	PS00867 Carbamoyl-phosphate synthase subdomain signature 2
192222006052	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006053	HMMPfam hit to PF01354, Antifreeze-like domain,score 3.8e-15
192222006054	UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; Region: NeuC_NnaA; TIGR03568
192222006055	Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase  family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues; Region: GT1_UDP-GlcNAc_2-Epimerase; cd03786
192222006056	active site
192222006057	homodimer interface [polypeptide binding]; other site
192222006058	HMMPfam hit to PF02350, UDP-N-acetylglucosamine 2-epimerase, score 2.9e-153
192222006059	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently...; Region: CBS_pair_NTP_transferase_assoc; cd04607
192222006060	NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family; Region: NTP_transferase_like_2; cd06426
192222006061	Substrate binding site; other site
192222006062	metal-binding site
192222006063	HMMPfam hit to PF00571, CBS domain, score 0.0046
192222006064	HMMPfam hit to PF00571, CBS domain, score 8.5e-07
192222006065	HMMPfam hit to PF00483, Nucleotidyl transferase,score 4.2e-30
192222006066	Predicted dehydrogenases and related proteins [General function prediction only]; Region: MviM; COG0673
192222006067	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006068	CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety; Region: CMP-NeuAc_Synthase; cd02513
192222006069	ligand binding site; other site
192222006070	tetramer interface; other site
192222006071	HMMPfam hit to PF02348, Cytidylyltransferase, score 6.7e-53
192222006072	flagellin modification protein A; Provisional; Region: PRK09186
192222006073	classical (c) SDR, subgroup 8; Region: SDR_c8; cd08930
192222006074	putative NAD(P) binding site [chemical binding]; other site
192222006075	active site
192222006076	HMMPfam hit to PF00106, short chain dehydrogenase,score 2.9e-15
192222006077	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006078	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 4.1e-85
192222006079	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006080	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 3.1e-83
192222006081	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006082	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 4.6e-79
192222006083	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006084	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 9.6e-90
192222006085	flagellin; Provisional; Region: PRK13589
192222006086	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
192222006087	Flagellin hook IN motif; Region: Flagellin_IN; pfam07196
192222006088	Flagellin hook IN motif; Region: Flagellin_IN; pfam07196
192222006089	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
192222006090	HMMPfam hit to PF00700, Bacterial flagellin C-terminus, score 6.3e-36
192222006091	HMMPfam hit to PF07196, Flagellin hook IN motif,score 2.2e-10
192222006092	HMMPfam hit to PF07196, Flagellin hook IN motif,score 5.4e-08
192222006093	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 6.6e-69
192222006094	flagellin; Reviewed; Region: PRK08411
192222006095	Bacterial flagellin N-terminal helical region; Region: Flagellin_N; pfam00669
192222006096	Flagellin hook IN motif; Region: Flagellin_IN; pfam07196
192222006097	Flagellin hook IN motif; Region: Flagellin_IN; pfam07196
192222006098	Bacterial flagellin C-terminal helical region; Region: Flagellin_C; pfam00700
192222006099	HMMPfam hit to PF00700, Bacterial flagellin C-terminus, score 1.5e-36
192222006100	HMMPfam hit to PF07196, Flagellin hook IN motif,score 2.2e-11
192222006101	HMMPfam hit to PF07196, Flagellin hook IN motif,score 3.2e-09
192222006102	HMMPfam hit to PF00669, Bacterial flagellin N-terminus, score 7.1e-69
192222006103	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006104	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 8.8e-71
192222006105	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2604
192222006106	HMMPfam hit to PF01973, Protein of unknown function DUF115, score 9.8e-73
192222006107	Protein of unknown function (DUF2920); Region: DUF2920; pfam11144
192222006108	HMMPfam hit to PF07963, Prokaryotic N-terminal methylation motif, score 1.5e-06
192222006109	1 probable transmembrane helix predicted for Cj1343c by TMHMM2.0 at aa 7-26
192222006110	UGMP family protein; Validated; Region: PRK09604
192222006111	Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]; Region: COG1214; cl14000
192222006112	HMMPfam hit to PF00814, Glycoprotease family, score 2.3e-19
192222006113	PS01016 Glycoprotease family signature
192222006114	M14 family of metallocarboxypeptidases and related proteins; Region: Peptidase_M14_like; cd00596
192222006115	active site
192222006116	Zn binding site [ion binding]; other site
192222006117	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447
192222006118	1-deoxy-D-xylulose 5-phosphate reductoisomerase; Region: DXP_reductoisom; pfam02670
192222006119	1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; Region: DXP_redisom_C; pfam08436
192222006120	DXP reductoisomerase C-terminal domain; Region: DXPR_C; pfam13288
192222006121	HMMPfam hit to PF02670, 1-deoxy-D-xylulose 5-phosphate reduct, score 5.7e-116
192222006122	PS00430 TonB-dependent receptor proteins signature 1
192222006123	Cytidylyltransferase family; Region: CTP_transf_1; cl00347
192222006124	HMMPfam hit to PF01148, Cytidylyltransferase family, score 7.5e-79
192222006125	PS01315 Phosphatidate cytidylyltransferase signature
192222006126	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006127	Fibronectin-binding protein A N-terminus (FbpA); Region: FbpA; pfam05833
192222006128	Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]; Region: COG1293
192222006129	Domain of unknown function (DUF814); Region: DUF814; pfam05670
192222006130	HMMPfam hit to PF05670, Domain of unknown function (DUF814), score 1.5e-35
192222006131	MobA catalyzes the formation of molybdopterin guanine dinucleotide; Region: MobA; cd02503
192222006132	molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317
192222006133	GTP binding site; other site
192222006134	The outer membrane phospholipase A (OMPLA) is an integral membrane enzyme that catalyses the hydrolysis of acylester bonds in phospholipids using calcium as a cofactor. The enzyme has a fold of transmembrane beta-barrels and is widespread among...; Region: OMPLA; cd00541
192222006135	dimerization interface [polypeptide binding]; other site
192222006136	substrate binding site [chemical binding]; other site
192222006137	active site
192222006138	calcium binding site [ion binding]; other site
192222006139	HMMPfam hit to PF02253, Phospholipase A1, score 4.1e-135
192222006140	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
192222006141	ABC-ATPase subunit  interface; other site
192222006142	dimer interface [polypeptide binding]; other site
192222006143	putative PBP binding regions; other site
192222006144	9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33, 54-76, 96-125, 138-160,180-202, 214-236, 241-263, 270-292 and 297-316
192222006145	HMMPfam hit to PF01032, FecCD transport family,score 1.7e-49
192222006146	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cl00462
192222006147	ABC-ATPase subunit  interface; other site
192222006148	dimer interface [polypeptide binding]; other site
192222006149	putative PBP binding regions; other site
192222006150	9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27, 37-59, 64-86, 101-120,125-147, 170-192, 222-244, 259-281 and 288-307
192222006151	HMMPfam hit to PF01032, FecCD transport family,score 3.3e-17
192222006152	ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CeuD; COG4604
192222006153	ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
192222006154	Walker A/P-loop; other site
192222006155	ATP binding site [chemical binding]; other site
192222006156	Q-loop/lid; other site
192222006157	ABC transporter signature motif; other site
192222006158	Walker B; other site
192222006159	D-loop; other site
192222006160	H-loop/switch region; other site
192222006161	HMMPfam hit to PF00005, ABC transporter, score 9.3e-49
192222006162	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006163	PS00211 ABC transporters family signature
192222006164	Siderophore binding protein FatB.  These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins...; Region: FatB; cd01140
192222006165	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
192222006166	putative ligand binding residues [chemical binding]; other site
192222006167	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006168	HMMPfam hit to PF01497, Periplasmic binding protein, score 1.2e-72
192222006169	Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit [Inorganic ion transport and metabolism]; Region: NrfA; COG3303
192222006170	HMMPfam hit to PF02335, Cytochrome c552, score 1.9e-15
192222006171	PS00190 Cytochrome c family heme-binding site signature
192222006172	PS00190 Cytochrome c family heme-binding site signature
192222006173	PS00190 Cytochrome c family heme-binding site signature
192222006174	PS00190 Cytochrome c family heme-binding site signature
192222006175	PS00190 Cytochrome c family heme-binding site signature
192222006176	1 probable transmembrane helix predicted for Cj1357c by TMHMM2.0 at aa 5-22
192222006177	cytochrome c nitrate reductase, small subunit; Region: cytochr_NrfH; TIGR03153
192222006178	HMMPfam hit to PF03264, NapC/NirT cytochrome c family, N-termin, score 8.9e-12
192222006179	PS00190 Cytochrome c family heme-binding site signature
192222006180	PS00190 Cytochrome c family heme-binding site signature
192222006181	PS00190 Cytochrome c family heme-binding site signature
192222006182	1 probable transmembrane helix predicted for Cj1358c by TMHMM2.0 at aa 13-35
192222006183	polyphosphate kinase; Provisional; Region: PRK05443
192222006184	Polyphosphate kinase N-terminal domain; Region: PP_kinase_N; pfam13089
192222006185	Polyphosphate kinase middle domain; Region: PP_kinase; pfam02503
192222006186	Catalytic C-terminal domain, first repeat, of Pseudomonas aeruginosa polyphosphate kinase 1 and similar proteins; Region: PLDc_PaPPK1_C1_like; cd09165
192222006187	putative domain interface [polypeptide binding]; other site
192222006188	putative active site [active]
192222006189	catalytic site [active]
192222006190	Catalytic C-terminal domain, second repeat, of Pseudomonas aeruginosa polyphosphate kinase 1 and similar proteins; Region: PLDc_PaPPK1_C2_like; cd09168
192222006191	putative domain interface [polypeptide binding]; other site
192222006192	putative active site [active]
192222006193	catalytic site [active]
192222006194	HMMPfam hit to PF02503, Polyphosphate kinase, score 0
192222006195	Holliday junction DNA helicase RuvB; Reviewed; Region: ruvB; PRK00080
192222006196	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222006197	Walker A motif; other site
192222006198	ATP binding site [chemical binding]; other site
192222006199	Walker B motif; other site
192222006200	arginine finger; other site
192222006201	Holliday junction DNA helicase ruvB C-terminus; Region: RuvB_C; pfam05491
192222006202	HMMPfam hit to PF05496, Holliday junction DNA helicase ruvB N-termin, score 1.3e-26
192222006203	HMMPfam hit to PF00004, ATPase family associated with various cellul, score 5.5e-28
192222006204	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006205	HMMPfam hit to PF05491, Holliday junction DNA helicase ruvB C-termin, score 4.6e-39
192222006206	pheromone autoinducer 2 transporter; Reviewed; Region: tqsA; cl00465
192222006207	HMMPfam hit to PF01594, Domain of unknown function DUF20, score 3.5e-68
192222006208	7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41, 56-78, 157-179, 194-216,225-247, 262-284 and 305-327
192222006209	fumarate hydratase; Reviewed; Region: fumC; PRK00485
192222006210	Class II fumarases; Region: Fumarase_classII; cd01362
192222006211	active site
192222006212	tetramer interface [polypeptide binding]; other site
192222006213	HMMPfam hit to PF00206, Lyase, score 3.2e-163
192222006214	PS00163 Fumarate lyases signature
192222006215	Peptidase S8 family domain in Autotransporter serine proteases; Region: Peptidases_S8_Autotransporter_serine_protease_like; cd04848
192222006216	catalytic triad [active]
192222006217	putative active site [active]
192222006218	Autotransporter-associated beta strand repeat; Region: Autotrns_rpt; cl15373
192222006219	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl01155
192222006220	HMMPfam hit to PF03797, Autotransporter beta-domain, score 3.7e-37
192222006221	HMMPfam hit to PF00082, Subtilase family, score 6.3e-11
192222006222	PS00138 Serine proteases, subtilase family, serine active site
192222006223	PS00137 Serine proteases, subtilase family,histidine active site
192222006224	glucosamine--fructose-6-phosphate aminotransferase; Reviewed; Region: PRK00331
192222006225	Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans).  The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In...; Region: GFAT; cd00714
192222006226	glutaminase active site [active]
192222006227	SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008
192222006228	dimer interface [polypeptide binding]; other site
192222006229	active site
192222006230	SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_2; cd05009
192222006231	dimer interface [polypeptide binding]; other site
192222006232	active site
192222006233	HMMPfam hit to PF01380, SIS domain, score 0.00048
192222006234	HMMPfam hit to PF01380, SIS domain, score 3e-39
192222006235	HMMPfam hit to PF00310, Glutamine amidotransferases class-II, score 9.2e-23
192222006236	PS00443 Glutamine amidotransferases class-II active site
192222006237	UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]; Region: GlnD; COG2844
192222006238	ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme; Region: ACT; cl09141
192222006239	hypothetical protein; Provisional; Region: PRK08444
192222006240	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222006241	FeS/SAM binding site; other site
192222006242	HMMPfam hit to PF04055, Radical SAM superfamily,score 2.2e-16
192222006243	Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]; Region: COG2252
192222006244	Sulfate transporter family; Region: Sulfate_transp; cl15842
192222006245	HMMPfam hit to PF00860, Permease family, score 4e-21
192222006246	13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39, 44-66, 73-95, 100-122,131-153, 168-186, 191-208, 246-268, 289-311, 321-343,350-367, 377-408 and 420-438
192222006247	Phosphoribosyl transferase (PRT)-type I domain; Region: PRTases_typeI; cd06223
192222006248	active site
192222006249	HMMPfam hit to PF00156, Phosphoribosyl transferase domain, score 1.2e-06
192222006250	PS00103 Purine/pyrimidine phosphoribosyl transferases signature
192222006251	VacJ like lipoprotein; Region: VacJ; cl01073
192222006252	HMMPfam hit to PF04333, VacJ like lipoprotein,score 1.9e-116
192222006253	Toluene tolerance, Ttg2; Region: Tol_Tol_Ttg2; cl01074
192222006254	HMMPfam hit to PF05494, Toluene tolerance, Ttg2,score 3.8e-69
192222006255	Predicted exporters of the RND superfamily [General function prediction only]; Region: COG1033
192222006256	Dolichyl-phosphate-mannose-protein mannosyltransferase; Region: PMT_2; cl15769
192222006257	13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32, 228-245, 249-268, 273-295,299-321, 353-375, 379-401, 433-450, 651-673, 680-702,706-728, 748-770 and 780-802
192222006258	NTPase/HAM1.  This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A...; Region: HAM1; cd00515
192222006259	active site
192222006260	dimerization interface [polypeptide binding]; other site
192222006261	HMMPfam hit to PF01725, Ham1 family, score 1.5e-52
192222006262	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222006263	Major Facilitator Superfamily; Region: MFS_1; pfam07690
192222006264	putative substrate translocation pore; other site
192222006265	HMMPfam hit to PF00083, Sugar (and other) transporter, score 8.1e-05
192222006266	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 1.6e-61
192222006267	11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32, 39-61, 71-93, 129-151,155-177, 205-227, 237-259, 268-285, 289-306, 327-349 and 353-375
192222006268	Esterases and lipases (includes fungal lipases, cholinesterases, etc.)  These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These...; Region: Esterase_lipase; cl12031
192222006269	4Fe-4S dicluster domain; Region: Fer4_7; pfam12838
192222006270	4Fe-4S dicluster domain; Region: Fer4_10; pfam13237
192222006271	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 7.5e-05
192222006272	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.00013
192222006273	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222006274	seryl-tRNA(sec) selenium transferase; Region: selA; TIGR00474
192222006275	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222006276	HMMPfam hit to PF03841, L-seryl-tRNA selenium transferase, score 4.4e-220
192222006277	Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]; Region: SelB; COG3276
192222006278	SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome; Region: SelB; cd04171
192222006279	G1 box; other site
192222006280	putative GEF interaction site [polypeptide binding]; other site
192222006281	GTP/Mg2+ binding site [chemical binding]; other site
192222006282	Switch I region; other site
192222006283	G2 box; other site
192222006284	G3 box; other site
192222006285	Switch II region; other site
192222006286	G4 box; other site
192222006287	G5 box; other site
192222006288	selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several...; Region: selB_II; cd03696
192222006289	Elongation factor SelB, winged helix; Region: SelB-wing_3; pfam09107
192222006290	HMMPfam hit to PF00009, Elongation factor Tu GTP binding domain, score 1.3e-28
192222006291	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006292	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
192222006293	1 probable transmembrane helix predicted for Cj1381 by TMHMM2.0 at aa 7-29
192222006294	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006295	NADPH-dependent FMN reductase; Region: FMN_red; cl00438
192222006296	HMMPfam hit to PF00258, Flavodoxin, score 6.8e-43
192222006297	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006298	PS00201 Flavodoxin signature
192222006299	Uncharacterized protein conserved in bacteria (DUF2325); Region: DUF2325; cl01811
192222006300	Catalase [Inorganic ion transport and metabolism]; Region: KatE; COG0753
192222006301	Clade 3 of the heme-binding enzyme catalase; Region: catalase_clade_3; cd08156
192222006302	tetramer interface [polypeptide binding]; other site
192222006303	heme binding pocket [chemical binding]; other site
192222006304	NADPH binding site [chemical binding]; other site
192222006305	HMMPfam hit to PF00199, Catalase, score 4.1e-259
192222006306	PS00437 Catalase proximal heme-ligand signature
192222006307	ankyrin repeats;  ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other...; Region: ANK; cd00204
192222006308	Ankyrin repeats (3 copies); Region: Ank_2; pfam12796
192222006309	HMMPfam hit to PF00023, Ankyrin repeat, score 6.5e-07
192222006310	HMMPfam hit to PF00023, Ankyrin repeat, score 0.0047
192222006311	HMMPfam hit to PF00023, Ankyrin repeat, score 7.4
192222006312	Uncharacterized protein conserved in bacteria [Function unknown]; Region: COG2964
192222006313	YheO-like PAS domain; Region: PAS_6; pfam08348
192222006314	Helix-turn-helix domains; Region: HTH; cl00088
192222006315	YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cd00448
192222006316	homotrimer interaction site [polypeptide binding]; other site
192222006317	putative active site [active]
192222006318	HMMPfam hit to PF01042, Endoribonuclease L-PSP,score 1.6e-56
192222006319	PS01094 Uncharacterized protein family UPF0076 signature
192222006320	Original (2000) note: Cj1389, probable transmembrane transport protein pseudogene, len: 1437 bp; similar to e.g. YHCL_ECOLI hypothetical transport protein (455 aa) (approx 45% identity), and DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa) (approx 31% identity). No Hp match; Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also, twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation work has been carried out within Escherichia coli with acceptable identity score, however,original designation was . Thus,  kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Carbohydrates, organic acids and alcohols; PMID:10525738
192222006321	HMMPfam hit to PF03606, C4-dicarboxylate anaerobic carrier, score 2.1e-56
192222006322	12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19, 26-48, 68-90, 110-132,137-159, 191-213, 254-276, 297-317, 337-359, 372-394,427-449 and 456-478
192222006323	cystathionine beta-lyase, bacterial; Region: cysta_beta_ly_B; TIGR01324
192222006324	cystathionine beta-lyase, bacterial; Region: cysta_beta_ly_B; TIGR01324
192222006325	Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl00321
192222006326	pyridoxal 5'-phosphate binding pocket [chemical binding]; other site
192222006327	catalytic residue [active]
192222006328	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 5.3e-97
192222006329	PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site
192222006330	Adenylosuccinate lyase [Nucleotide transport and metabolism]; Region: PurB; COG0015
192222006331	prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like; Region: pCLME; cd01597
192222006332	tetramer interface [polypeptide binding]; other site
192222006333	active site
192222006334	HMMPfam hit to PF00206, Lyase, score 2.2e-28
192222006335	PS00163 Fumarate lyases signature
192222006336	PS00962 Ribosomal protein S2 signature 1
192222006337	Original (2000) note: Cj1395, possible pseudogene,len: 1338 bp; similar to hypothetical proteins e.g. YXEQ_BACSU (445 aa) (approx 25% identity), and IRG1_MOUSE immune-responsive protein 1 (fragment) (646 aa) (approx 30% identity). No Hp match; Updated (2006) note: Pfam domain PF03972 MmgE/PrpD family identified within CDS. Further support given to product function. No specific characterisation has been carried out with acceptable identity scores yet. Thus, kept within product function. Functional classification - Misc
192222006338	HMMPfam hit to PF03972, MmgE/PrpD family, score 6.2e-57
192222006339	FeoA domain; Region: FeoA; cl00838
192222006340	HMMPfam hit to PF04023, FeoA domain, score 1.4e-18
192222006341	Fe2+ transport system protein B [Inorganic ion transport and metabolism]; Region: FeoB; COG0370
192222006342	Ferrous iron transport protein B (FeoB) family; Region: FeoB; cd01879
192222006343	G1 box; other site
192222006344	GTP/Mg2+ binding site [chemical binding]; other site
192222006345	Switch I region; other site
192222006346	G2 box; other site
192222006347	G3 box; other site
192222006348	Switch II region; other site
192222006349	G4 box; other site
192222006350	G5 box; other site
192222006351	Nucleoside recognition; Region: Gate; cl00486
192222006352	Ferrous iron transport protein B C terminus; Region: FeoB_C; pfam07664
192222006353	Nucleoside recognition; Region: Gate; cl00486
192222006354	HMMPfam hit to PF01926, GTPase of unknown function,score 1.4e-33
192222006355	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006356	HMMPfam hit to PF02421, Ferrous iron transport protein B, score 1.9e-46
192222006357	10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238, 266-288, 290-312,327-344, 357-379, 389-407, 449-466, 510-532, 553-575 and 585-607
192222006358	HMMPfam hit to PF07670, Nucleoside recognition,score 2.1e-12
192222006359	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006360	HMMPfam hit to PF07664, Ferrous iron transport protein B C terminus, score 4.8e-21
192222006361	HMMPfam hit to PF07670, Nucleoside recognition,score 4.1e-19
192222006362	Ni,Fe-hydrogenase I small subunit [Energy production and conversion]; Region: HyaA; COG1740
192222006363	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl15792
192222006364	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 Kd sub, score 6e-06
192222006365	Enoyl-[acyl-carrier-protein]; Region: FabI; COG0623
192222006366	Enoyl acyl carrier protein (ACP) reductase (ENR), divergent SDR; Region: ENR_SDR; cd05372
192222006367	NAD binding site [chemical binding]; other site
192222006368	homotetramer interface [polypeptide binding]; other site
192222006369	homodimer interface [polypeptide binding]; other site
192222006370	substrate binding site [chemical binding]; other site
192222006371	active site
192222006372	HMMPfam hit to PF00106, short chain dehydrogenase,score 4.6e-20
192222006373	Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually...; Region: TIM; cd00311
192222006374	substrate binding site [chemical binding]; other site
192222006375	dimer interface [polypeptide binding]; other site
192222006376	catalytic triad [active]
192222006377	HMMPfam hit to PF00121, Triosephosphate isomerase,score 1.3e-29
192222006378	Phosphoglycerate kinase; Region: PGK; pfam00162
192222006379	Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level...; Region: Phosphoglycerate_kinase; cd00318
192222006380	substrate binding site [chemical binding]; other site
192222006381	hinge regions; other site
192222006382	ADP binding site [chemical binding]; other site
192222006383	catalytic site [active]
192222006384	HMMPfam hit to PF00162, Phosphoglycerate kinase,score 1.6e-207
192222006385	PS00111 Phosphoglycerate kinase signature
192222006386	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006387	glyceraldehyde-3-phosphate dehydrogenase, type I; Region: GAPDH-I; TIGR01534
192222006388	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Region: Gp_dh_C; cl15856
192222006389	HMMPfam hit to PF02800, Glyceraldehyde 3-phosphate dehydrogenase, C-, score 7.5e-92
192222006390	PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site
192222006391	HMMPfam hit to PF00044, Glyceraldehyde 3-phosphate dehydrogenase, NA, score 1.2e-77
192222006392	Nicotinamide/nicotinate mononucleotide adenylyltransferase; Region: NMNAT; cd02165
192222006393	nicotinate (nicotinamide) nucleotide adenylyltransferase; Region: TIGR00482
192222006394	active site
192222006395	(T/H)XGH motif; other site
192222006396	HMMPfam hit to PF01467, Cytidylyltransferase, score 2.2e-24
192222006397	Oligomerisation domain; Region: Oligomerisation; cl00519
192222006398	HMMPfam hit to PF02410, Domain of unknown function DUF143, score 6.4e-28
192222006399	Protein of unknown function (DUF1090); Region: DUF1090; pfam06476
192222006400	HMMPfam hit to PF06476, Protein of unknown function (DUF1090), score 4.6e-49
192222006401	Phosphomannomutase [Carbohydrate transport and metabolism]; Region: {ManB}; COG1109
192222006402	The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a...; Region: PMM_PGM; cd03089
192222006403	active site
192222006404	substrate binding site [chemical binding]; other site
192222006405	metal binding site [ion binding]; metal-binding site
192222006406	HMMPfam hit to PF00408,Phosphoglucomutase/phosphomannomutase, C-, score 3.7e-09
192222006407	HMMPfam hit to PF02880,Phosphoglucomutase/phosphomannomutase, al, score 2e-16
192222006408	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006409	HMMPfam hit to PF02879,Phosphoglucomutase/phosphomannomutase, al, score 4.9e-23
192222006410	HMMPfam hit to PF02878,Phosphoglucomutase/phosphomannomutase, al, score 1.3e-42
192222006411	Flagellar basal body-associated protein FliL; Region: FliL; cl00681
192222006412	HMMPfam hit to PF03748, Flagellar basal body-associated protein FliL, score 6.8e-64
192222006413	1 probable transmembrane helix predicted for Cj1408 by TMHMM2.0 at aa 19-41
192222006414	4'-phosphopantetheinyl transferase superfamily; Region: ACPS; cl00500
192222006415	HMMPfam hit to PF01648, 4'-phosphopantetheinyl transferase superfami, score 1.4e-14
192222006416	PS00041 Bacterial regulatory proteins, araC family signature
192222006417	1 probable transmembrane helix predicted for Cj1410c by TMHMM2.0 at aa 33-55
192222006418	Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]; Region: CypX; cl12078
192222006419	Cytochrome P450; Region: p450; pfam00067
192222006420	HMMPfam hit to PF00067, Cytochrome P450, score 4.3e-68
192222006421	PS00086 Cytochrome P450 cysteine heme-iron ligand signature
192222006422	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006423	Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]; Region: KpsS; COG3562
192222006424	Capsule polysaccharide biosynthesis protein; Region: Capsule_synth; pfam05159
192222006425	HMMPfam hit to PF05159, Capsule polysaccharide biosynthesis pro, score 4.1e-137
192222006426	1 probable transmembrane helix predicted for Cj1413c by TMHMM2.0 at aa 157-179
192222006427	Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]; Region: KpsC; COG3563
192222006428	HMMPfam hit to PF05159, Capsule polysaccharide biosynthesis pro, score 2.5e-118
192222006429	HMMPfam hit to PF05159, Capsule polysaccharide biosynthesis pro, score 2.5e-81
192222006430	Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically 'activated' sulfate form important for the assimilation of...; Region: APSK; cd02027
192222006431	ligand-binding site [chemical binding]; other site
192222006432	HMMPfam hit to PF01583, Adenylylsulphate kinase,score 2.7e-17
192222006433	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006434	Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline; Region: PC_cytidylyltransferase; cd02523
192222006435	active site
192222006436	metal-binding site
192222006437	HMMPfam hit to PF00483, Nucleotidyl transferase,score 0.00053
192222006438	Predicted glutamine amidotransferases [General function prediction only]; Region: COG2071
192222006439	Type 1 glutamine amidotransferase (GATase1)-like domain; Region: GAT_1; cl00020
192222006440	conserved cys residue [active]
192222006441	hypothetical protein; Provisional; Region: PRK05849
192222006442	Pyruvate phosphate dikinase, PEP/pyruvate binding domain; Region: PPDK_N; pfam01326
192222006443	PEP-utilising enzyme, mobile domain; Region: PEP-utilizers; cl01586
192222006444	SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500
192222006445	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222006446	S-adenosylmethionine binding site [chemical binding]; other site
192222006447	SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]; Region: SmtA; COG0500
192222006448	S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I;  AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cd02440
192222006449	S-adenosylmethionine binding site [chemical binding]; other site
192222006450	PS00213 Lipocalin signature
192222006451	region with low G+C: 26.5%
192222006452	Protein of unknown function (DUF2972); Region: DUF2972; pfam11186
192222006453	Protein of unknown function (DUF2972); Region: DUF2972; pfam11186
192222006454	PS00221 MIP family signature
192222006455	WcbM_like is a subfamily of nucleotidyl transferases; Region: NTP_transferase_WcbM_like; cd06915
192222006456	Substrate binding site; other site
192222006457	Mg++ binding site; other site
192222006458	metal-binding site
192222006459	Mg++ binding site; other site
192222006460	metal-binding site
192222006461	HMMPfam hit to PF00483, Nucleotidyl transferase,score 1.9e-13
192222006462	Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of...; Region: SIS_GmhA; cd05006
192222006463	dimer interface [polypeptide binding]; other site
192222006464	active site
192222006465	HMMPfam hit to PF01380, SIS domain, score 1.4e-11
192222006466	Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]; Region: COG2605
192222006467	GHMP kinases N terminal domain; Region: GHMP_kinases_N; pfam00288
192222006468	HMMPfam hit to PF00288, GHMP kinases  ATP-binding protei, score 5.8e-42
192222006469	PS00012 Phosphopantetheine attachment site
192222006470	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006471	Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]; Region: WcaG; COG0451
192222006472	extended (e) SDRs; Region: SDR_e; cd08946
192222006473	NAD(P) binding site [chemical binding]; other site
192222006474	active site
192222006475	substrate binding site [chemical binding]; other site
192222006476	GDP-fucose synthetase, extended (e) SDRs; Region: GDP_FS_SDR_e; cd05239
192222006477	GDP-4-keto-6-deoxymannose-3, 5-epimerase-4-reductase; Region: PLN02725
192222006478	NADP binding site [chemical binding]; other site
192222006479	active site
192222006480	putative substrate binding site [chemical binding]; other site
192222006481	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006482	Cupin domain; Region: Cupin_2; cl09118
192222006483	HMMPfam hit to PF00908, dTDP-4-dehydrorhamnose 3,5-epimerase, score 9.4e-17
192222006484	PS00455  AMP-binding domain signature
192222006485	This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to...; Region: GT1_YqgM_like; cd03801
192222006486	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222006487	haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; Region: HAD-SF-IA-v1; TIGR01549
192222006488	HMMPfam hit to PF00534, Glycosyl transferases group, score 3.7e-23
192222006489	Protein of unknown function; Region: DUF3971; pfam13116
192222006490	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222006491	FeS/SAM binding site; other site
192222006492	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
192222006493	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
192222006494	active site
192222006495	HMMPfam hit to PF00535, Glycosyl transferase, score 7.9e-35
192222006496	Phosphoserine phosphatase [Amino acid transport and metabolism]; Region: SerB; COG0560
192222006497	Haloacid Dehalogenase-like Hydrolases; Region: HAD_like; cl11391
192222006498	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079
192222006499	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
192222006500	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222006501	homodimer interface [polypeptide binding]; other site
192222006502	catalytic residue [active]
192222006503	HMMPfam hit to PF00155, Aminotransferase class I and II, score 2.2e-07
192222006504	PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site
192222006505	Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]; Region: HisC; COG0079
192222006506	Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine...; Region: AAT_like; cd00609
192222006507	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222006508	homodimer interface [polypeptide binding]; other site
192222006509	catalytic residue [active]
192222006510	HMMPfam hit to PF00155, Aminotransferase class I and II, score 9.2e-15
192222006511	PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site
192222006512	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
192222006513	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
192222006514	active site
192222006515	ATP-grasp domain; Region: ATP-grasp_4; cl03087
192222006516	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222006517	HMMPfam hit to PF00535, Glycosyl transferase, score 2.8e-36
192222006518	UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]; Region: Glf; COG0562
192222006519	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006520	UDP-galactopyranose mutase; Region: GLF; pfam03275
192222006521	HMMPfam hit to PF03275, UDP-galactopyranose mutase,score 2e-114
192222006522	Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]; Region: WcaA; COG0463
192222006523	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222006524	active site
192222006525	1 probable transmembrane helix predicted for Cj1440c by TMHMM2.0 at aa 375-397
192222006526	HMMPfam hit to PF00535, Glycosyl transferase, score 2.1e-23
192222006527	UDP-glucose 6-dehydrogenase; Provisional; Region: PRK15057
192222006528	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006529	UDP-glucose/GDP-mannose dehydrogenase family, central domain; Region: UDPG_MGDP_dh; pfam00984
192222006530	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006531	HMMPfam hit to PF03720, UDP-glucose/GDP-mannose dehydrogenase, score 5.2e-06
192222006532	HMMPfam hit to PF00984, UDP-glucose/GDP-mannose dehydrogenase, score 3.7e-29
192222006533	HMMPfam hit to PF03721, UDP-glucose/GDP-mannose dehydrogenase, score 3.8e-33
192222006534	Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]; Region: COG4092
192222006535	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761
192222006536	active site
192222006537	Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394
192222006538	KpsF/GutQ family protein; Region: kpsF; TIGR00393
192222006539	KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose...; Region: SIS_Kpsf; cd05014
192222006540	putative active site [active]
192222006541	This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein.  These APIs catalyze the conversion of the pentose pathway...; Region: CBS_pair_KpsF_GutQ_assoc; cd04604
192222006542	HMMPfam hit to PF00571, CBS domain, score 0.0016
192222006543	HMMPfam hit to PF00571, CBS domain, score 8.1e-10
192222006544	HMMPfam hit to PF01380, SIS domain, score 1.1e-30
192222006545	Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]; Region: Wza; COG1596
192222006546	Polysaccharide biosynthesis/export protein; Region: Poly_export; pfam02563
192222006547	HMMPfam hit to PF02563, Polysaccharide biosynthesis/export protei, score 2.1e-48
192222006548	Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]; Region: KpsE; COG3524
192222006549	HMMPfam hit to PF02706, Chain length determinant protein, score 0.013
192222006550	ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]; Region: CbiO; COG1122
192222006551	ABC_KpsT_Wzt   The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export.  Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and...; Region: ABC_KpsT_Wzt; cd03220
192222006552	Walker A/P-loop; other site
192222006553	ATP binding site [chemical binding]; other site
192222006554	Q-loop/lid; other site
192222006555	ABC transporter signature motif; other site
192222006556	Walker B; other site
192222006557	D-loop; other site
192222006558	H-loop/switch region; other site
192222006559	HMMPfam hit to PF00005, ABC transporter, score 8.2e-21
192222006560	PS00211 ABC transporters family signature
192222006561	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006562	ABC-2 type transporter; Region: ABC2_membrane; cl11417
192222006563	HMMPfam hit to PF01061, ABC-2 type transporter,score 5.2e-10
192222006564	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
192222006565	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006566	dUTPase; Region: dUTPase_2; pfam08761
192222006567	Etoposide-induced protein 2.4 (EI24); Region: EI24; cl01126
192222006568	5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42, 57-79, 81-103, 136-158 and 201-223
192222006569	HMMPfam hit to PF04401, Protein of unknown function (DUF540), score 3e-75
192222006570	N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases...; Region: PP-ATPase; cd01992
192222006571	Ligand Binding Site [chemical binding]; other site
192222006572	HMMPfam hit to PF01171, PP-loop family, score 6.8e-90
192222006573	2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]; Region: MiaB; COG0621
192222006574	Uncharacterized protein family UPF0004; Region: UPF0004; pfam00919
192222006575	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222006576	FeS/SAM binding site; other site
192222006577	HMMPfam hit to PF04055, Radical SAM superfamily,score 4.3e-21
192222006578	PS01278 Uncharacterized protein family UPF0004 signature
192222006579	HMMPfam hit to PF00919, Uncharacterized protein family UPF0004, score 9e-37
192222006580	peptide chain release factor 2; Validated; Region: prfB; PRK00578
192222006581	RF-1 domain; Region: RF-1; cl02875
192222006582	RF-1 domain; Region: RF-1; cl02875
192222006583	HMMPfam hit to PF03462, PCRF domain, score 2.7e-50
192222006584	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 2e-67
192222006585	PS00745 Prokaryotic-type class I peptide chain release factors signature
192222006586	tRNA pseudouridine synthase D; Reviewed; Region: truD; PRK00984
192222006587	PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...; Region: PseudoU_synth_EcTruD; cd02575
192222006588	Permutation of conserved domain; other site
192222006589	active site
192222006590	PseudoU_synth:  Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families.  This group consists of...; Region: PseudoU_synth; cl00130
192222006591	HMMPfam hit to PF01142, tRNA pseudouridine synthase D (TruD), score 7.8e-165
192222006592	thiamine monophosphate kinase; Provisional; Region: PRK05731
192222006593	ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the...; Region: ThiL; cd02194
192222006594	ATP binding site [chemical binding]; other site
192222006595	dimerization interface [polypeptide binding]; other site
192222006596	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 0.0019
192222006597	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006598	HMMPfam hit to PF03602, Conserved hypothetical protein, score 5.6e-69
192222006599	PS00092 N-6 Adenine-specific DNA methylases signature
192222006600	flagellar basal body P-ring protein; Provisional; Region: flgI; PRK05303
192222006601	flagellar basal body P-ring protein; Reviewed; Region: flgI; cl14622
192222006602	HMMPfam hit to PF02119, Flagellar P-ring protein,score 1.4e-130
192222006603	Rod binding protein; Region: Rod-binding; cl01626
192222006604	FlgN protein; Region: FlgN; cl09176
192222006605	flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK08471
192222006606	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222006607	HMMPfam hit to PF00460, Flagella basal body rod protein, score 2.1e-05
192222006608	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 6.6e-18
192222006609	Protein of unknown function (DUF2400); Region: DUF2400; cl09884
192222006610	Predicted permeases [General function prediction only]; Region: COG0730; cl00498
192222006611	Sulfite exporter TauE/SafE; Region: TauE; pfam01925
192222006612	7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29, 76-98, 105-122, 149-171,183-200, 204-226 and 233-250
192222006613	HMMPfam hit to PF01925, Domain of unknown function DUF81, score 5.8e-34
192222006614	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006615	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006616	Original (2000) note: Cj1470c, probable type II protein secretion system F protein pseudogene, len: 1178 bp; similar to e.g. HOFC_ECOLI protein transport protein HOFC (400 aa) (22.7% identity)and GSPF_PSEAE general secretion pathway protein F (405 aa) (23.0% identity). Contains Pfam match to entry PF00482 GSPII_F, Bacterial type II secretion system protein F domain. No Hp match; Updated (2006) note: Pfam domain PF00482 Bacterial type II secretion system protein F domain identified within CDS. Also, four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterisation paper within Campylobacter attached. Thus,  not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Protein and peptide secretion; PMID:12949093
192222006617	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 2.4e-15
192222006618	HMMPfam hit to PF00482, Bacterial type II secretion system protein F, score 5.9e-21
192222006619	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]; Region: PulE; COG2804
192222006620	PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which...; Region: PulE-GspE; cd01129
192222006621	Walker A motif; other site
192222006622	ATP binding site [chemical binding]; other site
192222006623	Walker B motif; other site
192222006624	HMMPfam hit to PF00437, Type II/IV secretion system protein, score 5.9e-102
192222006625	PS00662 Bacterial type II secretion system protein E signature
192222006626	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006627	1 probable transmembrane helix predicted for Cj1472c by TMHMM2.0 at aa 20-42
192222006628	The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; Region: AAA; cd00009
192222006629	AAA domain; Region: AAA_22; pfam13401
192222006630	Walker A motif; other site
192222006631	ATP binding site [chemical binding]; other site
192222006632	Uncharacterized ATPase, putative transposase [General function prediction only]; Region: COG2842
192222006633	Walker B motif; other site
192222006634	arginine finger; other site
192222006635	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006636	pilus (MSHA type) biogenesis protein MshL; Region: pilus_MshL; TIGR02519
192222006637	Bacterial type II and III secretion system protein; Region: Secretin; pfam00263
192222006638	HMMPfam hit to PF00263, Bacterial type II and III secretion syst, score 1e-73
192222006639	HMMPfam hit to PF07655, Secretin N-terminal domain,score 1.3e-38
192222006640	HMMPfam hit to PF07660, Secretin and TonB N terminus short domai, score 2.6e-08
192222006641	pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Region: pyruv_ox_red; TIGR02176
192222006642	Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins; Region: TPP_PYR_PFOR_IOR-alpha_like; cd07034
192222006643	dimer interface [polypeptide binding]; other site
192222006644	PYR/PP interface [polypeptide binding]; other site
192222006645	TPP binding site [chemical binding]; other site
192222006646	substrate binding site [chemical binding]; other site
192222006647	Pyruvate ferredoxin/flavodoxin oxidoreductase; Region: POR; cl00546
192222006648	Domain of unknown function; Region: EKR; cl11037
192222006649	4Fe-4S binding domain; Region: Fer4; cl02805
192222006650	Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This...; Region: TPP_PFOR_PNO; cd03377
192222006651	TPP-binding site [chemical binding]; other site
192222006652	dimer interface [polypeptide binding]; other site
192222006653	HMMPfam hit to PF02775, Thiamine pyrophosphate enzyme, C-termina, score 5.1e-104
192222006654	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.00046
192222006655	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222006656	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 7.6e-06
192222006657	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222006658	HMMPfam hit to PF01558, Pyruvate ferredoxin/flavodoxin oxidoredu, score 1.7e-68
192222006659	HMMPfam hit to PF01855, Pyruvate flavodoxin/ferredoxin oxidoredu, score 2.4e-108
192222006660	Predicted phosphatases [General function prediction only]; Region: Gph; COG0546
192222006661	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222006662	motif II; other site
192222006663	HMMPfam hit to PF00702, haloacid dehalogenase-like hydrolase, score 2e-19
192222006664	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl01155
192222006665	Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; Region: OmpA_C-like; cd07185
192222006666	ligand binding site [chemical binding]; other site
192222006667	HMMPfam hit to PF00691, OmpA family, score 2.6e-37
192222006668	PS01068 OmpA-like domain
192222006669	HMMPfam hit to PF01389, OmpA-like transmembrane domain, score 0.00072
192222006670	Ribosomal protein S9/S16; Region: Ribosomal_S9; cl00334
192222006671	HMMPfam hit to PF00380, Ribosomal protein S9/S16,score 2.5e-47
192222006672	PS00360 Ribosomal protein S9 signature
192222006673	Ribosomal protein L13.  Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the...; Region: Ribosomal_L13; cd00392
192222006674	23S rRNA interface [nucleotide binding]; other site
192222006675	L3 interface [polypeptide binding]; other site
192222006676	HMMPfam hit to PF00572, Ribosomal protein L13,score 7.7e-54
192222006677	PS00783 Ribosomal protein L13 signature
192222006678	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222006679	putative recombination protein RecB; Provisional; Region: PRK13909
192222006680	Family description; Region: UvrD_C_2; cl15862
192222006681	CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641
192222006682	HMMPfam hit to PF00580, UvrD/REP helicase, score 3.9e-28
192222006683	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006684	Inactivated superfamily I helicase [DNA replication, recombination, and repair]; Region: COG3893
192222006685	CRISPR/Cas system-associated protein Cas4; Region: Cas4_I-A_I-B_I-C_I-D_II-B; cl00641
192222006686	FixH; Region: FixH; cl01254
192222006687	1 probable transmembrane helix predicted for Cj1483c by TMHMM2.0 at aa 7-29
192222006688	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006689	Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]; Region: RbsK; COG0524
192222006690	1 probable transmembrane helix predicted for Cj1485c by TMHMM2.0 at aa 7-26
192222006691	Family of unknown function (DUF4006); Region: DUF4006; pfam13179
192222006692	1 probable transmembrane helix predicted for Cj1486c by TMHMM2.0 at aa 15-37
192222006693	cytochrome c oxidase, cbb3-type, subunit III; Region: ccoP; TIGR00782
192222006694	Cytochrome c; Region: Cytochrom_C; cl11414
192222006695	Cytochrome c; Region: Cytochrom_C; cl11414
192222006696	HMMPfam hit to PF00034, Cytochrome c, score 4.4e-07
192222006697	PS00190 Cytochrome c family heme-binding site signature
192222006698	HMMPfam hit to PF00034, Cytochrome c, score 0.0077
192222006699	PS00190 Cytochrome c family heme-binding site signature
192222006700	Cytochrome cbb oxidase CcoQ.  Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2...; Region: cbb3_Oxidase_CcoQ; cl00282
192222006701	1 probable transmembrane helix predicted for Cj1488c by TMHMM2.0 at aa 29-51
192222006702	Cbb3-type cytochrome oxidase, cytochrome c subunit [Energy production and conversion]; Region: CcoO; COG2993
192222006703	Cytochrome C oxidase, mono-heme subunit/FixO; Region: FixO; cl01130
192222006704	HMMPfam hit to PF02433, Cytochrome C oxidase,mono-heme subunit/FixO, score 2.2e-99
192222006705	PS00190 Cytochrome c family heme-binding site signature
192222006706	1 probable transmembrane helix predicted for Cj1489c by TMHMM2.0 at aa 10-32
192222006707	Heme-copper oxidase subunit I.  Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane.  The superfamily is...; Region: Heme_Cu_Oxidase_I; cl00275
192222006708	Low-spin heme binding site [chemical binding]; other site
192222006709	D-pathway; other site
192222006710	Putative water exit pathway; other site
192222006711	Binuclear center (active site) [active]
192222006712	K-pathway; other site
192222006713	Putative proton exit pathway; other site
192222006714	HMMPfam hit to PF00115, Cytochrome C and Quinol oxidase polypeptide, score 3.1e-12
192222006715	PS00077 Heme-copper oxidase catalytic subunit,copper B binding region signature
192222006716	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]; Region: OmpR; COG0745
192222006717	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222006718	active site
192222006719	phosphorylation site [posttranslational modification]
192222006720	intermolecular recognition site; other site
192222006721	dimerization interface [polypeptide binding]; other site
192222006722	Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and...; Region: trans_reg_C; cd00383
192222006723	DNA binding site [nucleotide binding]
192222006724	HMMPfam hit to PF00486, Transcriptional regulatory protein, C te, score 3.9e-18
192222006725	HMMPfam hit to PF00072, Response regulator receiver domain, score 4.4e-32
192222006726	PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in...; Region: PAS; cd00130
192222006727	PAS domain; Region: PAS_9; pfam13426
192222006728	putative active site [active]
192222006729	heme pocket [chemical binding]; other site
192222006730	Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642
192222006731	Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; Region: HATPase_c; cd00075
192222006732	ATP binding site [chemical binding]; other site
192222006733	Mg2+ binding site [ion binding]; other site
192222006734	G-X-G motif; other site
192222006735	HMMPfam hit to PF02518, Histidine kinase-, DNA gyrase B-, and HSP90, score 1.3e-26
192222006736	Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl15788
192222006737	carbamoyl phosphate synthase small subunit; Reviewed; Region: PRK12564
192222006738	Carbamoyl-phosphate synthase small chain, CPSase domain; Region: CPSase_sm_chain; cl03056
192222006739	Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II; Region: GATase1_CPSase; cd01744
192222006740	catalytic site [active]
192222006741	subunit interface [polypeptide binding]; other site
192222006742	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 1.5e-57
192222006743	PS00442 Glutamine amidotransferases class-I active site
192222006744	HMMPfam hit to PF00988, Carbamoyl-phosphate synthase small ch, score 5.6e-55
192222006745	Protein of unknown function (DUF507); Region: DUF507; cl01112
192222006746	HMMPfam hit to PF04368, Protein of unknown function (DUF507), score 1.5e-129
192222006747	MgtE intracellular N domain; Region: MgtE_N; cl15244
192222006748	Flagellar FliJ protein; Region: FliJ; pfam02050
192222006749	Adenylosuccinate synthetase; Region: Adenylsucc_synt; smart00788
192222006750	Adenylosuccinate synthetase (AdSS) catalyzes the first step in the de novo biosynthesis of AMP. IMP and L-aspartate are conjugated in a two-step reaction accompanied by the hydrolysis of GTP to GDP in the presence of Mg2+. In the first step, the...; Region: AdSS; cd03108
192222006751	GDP-binding site [chemical binding]; other site
192222006752	ACT binding site; other site
192222006753	IMP binding site; other site
192222006754	HMMPfam hit to PF00709, Adenylosuccinate synthetase, score 1.6e-193
192222006755	PS00513 Adenylosuccinate synthetase active site
192222006756	PS01266 Adenylosuccinate synthetase GTP-binding site
192222006757	putative inner membrane protein; Provisional; Region: PRK11099
192222006758	Sulphur transport; Region: Sulf_transp; cl01018
192222006759	10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41, 80-97, 110-129, 139-161,194-216, 226-244, 265-287, 297-319, 331-353 and 368-390
192222006760	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006761	HMMPfam hit to PF04143, YeeE/YedE family (DUF395),score 1.3e-20
192222006762	HMMPfam hit to PF04143, YeeE/YedE family (DUF395),score 6.5e-17
192222006763	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006764	YedF is a bacterial SirA-like protein of unknown function.  SirA  (also known as UvrY,  and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system...; Region: YedF; cd03422
192222006765	CPxP  motif; other site
192222006766	HMMPfam hit to PF01206, SirA-like protein, score 1.6e-27
192222006767	PS01148 Uncharacterized protein family UPF0033 signature
192222006768	Sodium:solute symporter family; Region: SSF; cl00456
192222006769	HMMPfam hit to PF00474, Sodium:solute symporter family, score 2e-120
192222006770	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006771	Proline dehydrogenase; Region: Pro_dh; cl03282
192222006772	Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA; Region: ALDH_PutA-P5CDH; cd07125
192222006773	Aldehyde dehydrogenase family; Region: Aldedh; pfam00171
192222006774	Glutamate binding site [chemical binding]; other site
192222006775	NAD binding site [chemical binding]; other site
192222006776	catalytic residues [active]
192222006777	HMMPfam hit to PF00171, Aldehyde dehydrogenase family, score 1.3e-29
192222006778	PS00070 Aldehyde dehydrogenases cysteine active site
192222006779	PS00687 Aldehyde dehydrogenases glutamic acid active site
192222006780	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006781	HMMPfam hit to PF01619, Proline dehydrogenase,score 5.2e-98
192222006782	Selenophosphate synthase [Amino acid transport and metabolism]; Region: SelD; COG0709
192222006783	Selenophosphate synthetase  (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The...; Region: SelD; cd02195
192222006784	dimerization interface [polypeptide binding]; other site
192222006785	putative ATP binding site [chemical binding]; other site
192222006786	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 2.9e-21
192222006787	SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain.  The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY,  and YhhP) belongs to a family of a two-component response...; Region: SirA_like_N; cd03421
192222006788	selenium metabolism protein YedF; Region: selenium_YedF; TIGR03527
192222006789	CPxP  motif; other site
192222006790	HMMPfam hit to PF01206, SirA-like protein, score 5.6e-06
192222006791	Cache domain; Region: Cache_1; pfam02743
192222006792	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
192222006793	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222006794	dimer interface [polypeptide binding]; other site
192222006795	putative CheW interface [polypeptide binding]; other site
192222006796	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 1.7e-18
192222006797	Helix-turn-helix domains; Region: HTH; cl00088
192222006798	HMMPfam hit to PF00126, Bacterial regulatory helix-turn-helix protei, score 4.4e-13
192222006799	FdhD/NarQ family; Region: FdhD-NarQ; cl00659
192222006800	HMMPfam hit to PF02634, FdhD/NarQ family, score 9.6e-48
192222006801	Cytochrome b (N-terminus)/b6/petB:  Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria; Region: Cytochrome_b_N; cl00859
192222006802	formate dehydrogenase, gamma subunit; Region: formate-DH-gamm; TIGR01583
192222006803	Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]; Region: HybA; COG0437
192222006804	4Fe-4S binding domain; Region: Fer4; cl02805
192222006805	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 5e-07
192222006806	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222006807	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_Formate-Dh-Na-like; cd02752
192222006808	formate dehydrogenase, alpha subunit, archaeal-type; Region: Fdh-alpha; TIGR01591
192222006809	[4Fe-4S] binding site [ion binding]; other site
192222006810	molybdopterin cofactor binding site; other site
192222006811	Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the...; Region: MopB_CT_Formate-Dh-Na-like; cd02792
192222006812	molybdopterin cofactor binding site; other site
192222006813	HMMPfam hit to PF01568, Molydopterin dinucleotide binding dom, score 1.3e-17
192222006814	HMMPfam hit to PF00384, Molybdopterin oxidoreductase, score 1e-61
192222006815	TGA codes for Selenocysteine in Cj1511c
192222006816	HMMPfam hit to PF04879, Molybdopterin oxidoreductase Fe4S4 do, score 1.9e-19
192222006817	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1
192222006818	quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476
192222006819	Nitrate reductase delta subunit; Region: Nitrate_red_del; cl00958
192222006820	carboxynorspermidine decarboxylase; Region: nspC; TIGR01047
192222006821	Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase; Region: PLPDE_III_CANSDC; cd06829
192222006822	dimer interface [polypeptide binding]; other site
192222006823	active site
192222006824	pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site
192222006825	catalytic residues [active]
192222006826	substrate binding site [chemical binding]; other site
192222006827	HMMPfam hit to PF00278, Pyridoxal-dependent decarboxylase, C-, score 0.0031
192222006828	Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]; Region: SufI; COG2132
192222006829	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412
192222006830	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412
192222006831	Cytochrome C oxidase subunit II, periplasmic domain; Region: COX2; cl11412
192222006832	HMMPfam hit to PF07732, Multicopper oxidase, score 3.7e-48
192222006833	HMMPfam hit to PF00394, Multicopper oxidase, score 9.1e-05
192222006834	HMMPfam hit to PF07731, Multicopper oxidase, score 1.5e-18
192222006835	PS00080 Multicopper oxidases signature 2
192222006836	Ubiquitin-like proteins; Region: UBQ; cl00155
192222006837	charged pocket; other site
192222006838	hydrophobic patch; other site
192222006839	HMMPfam hit to PF02597, ThiS family, score 3.1e-13
192222006840	MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoaE; cd00756
192222006841	MoaE homodimer interface [polypeptide binding]; other site
192222006842	MoaD interaction [polypeptide binding]; other site
192222006843	active site residues [active]
192222006844	HMMPfam hit to PF02391, MoaE protein, score 0.00028
192222006845	Molybdopterin biosynthesis enzyme [Coenzyme metabolism]; Region: MoeA; COG0303
192222006846	MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and...; Region: MoeA; cd00887
192222006847	dimer interface [polypeptide binding]; other site
192222006848	putative functional site; other site
192222006849	putative MPT binding site; other site
192222006850	HMMPfam hit to PF03453, MoeA N-terminal region (domain I and II, score 1.3e-69
192222006851	HMMPfam hit to PF00994, Probable molybdopterin binding domain, score 1.6e-30
192222006852	HMMPfam hit to PF03454, MoeA C-terminal region (domain IV), score 4.1e-16
192222006853	1 probable transmembrane helix predicted for Cj1520 by TMHMM2.0 at aa 46-63
192222006854	CRISPR/Cas system-associated protein Cas2; Region: Cas2_I_II_III; cd09638
192222006855	CRISPR/Cas system-associated protein Cas1; Region: Cas1_II; cd09720
192222006856	Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]; Region: COG3513
192222006857	CRISPR/Cas system-associated protein Cas9; Region: Csn1; cd09643
192222006858	Original (2000) note: Cj1528, probable transmembrane transport protein pseudogene, len: 1191 bp; similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa), approx. 31.6% identity, and YHCL_ECOLI (455 aa) approx. 28.0% identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene), approx. 36.7% identity. May extend further upstream; Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also, ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene, however, was modified to more specific family member based on motif match. Identity scores were marginal, so  was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates, organic acids and alcohols; PMID:10525738
192222006859	HMMPfam hit to PF03606, C4-dicarboxylate anaerobic carrier, score 5.5e-08
192222006860	10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21, 26-48, 68-90, 119-153,200-222, 248-270, 274-291, 304-326, 352-374 and 444-461
192222006861	phosphoribosylaminoimidazole synthetase; Provisional; Region: PRK05385
192222006862	PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis; Region: PurM; cd02196
192222006863	dimerization interface [polypeptide binding]; other site
192222006864	putative ATP binding site [chemical binding]; other site
192222006865	HMMPfam hit to PF02769, AIR synthase related protein, C-terminal dom, score 7.4e-38
192222006866	PS00070 Aldehyde dehydrogenases cysteine active site
192222006867	HMMPfam hit to PF00586, AIR synthase related protein, N-terminal dom, score 3.6e-58
192222006868	Dephospho-CoA kinase [Coenzyme metabolism]; Region: CoaE; COG0237
192222006869	Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis; Region: DPCK; cd02022
192222006870	CoA-binding site [chemical binding]; other site
192222006871	ATP-binding [chemical binding]; other site
192222006872	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006873	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006874	HMMPfam hit to PF01121, Dephospho-CoA kinase, score 1.6e-29
192222006875	diaminopimelate epimerase; Provisional; Region: dapF; PRK00450
192222006876	Diaminopimelate epimerase; Region: DAP_epimerase; cl14668
192222006877	Diaminopimelate epimerase; Region: DAP_epimerase; cl14668
192222006878	HMMPfam hit to PF01678, Diaminopimelate epimerase,score 1.7e-20
192222006879	PS01326 Diaminopimelate epimerase signature
192222006880	HMMPfam hit to PF01678, Diaminopimelate epimerase,score 1e-07
192222006881	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006882	lysozyme_like domain.  This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases; Region: lysozyme_like; cl00222
192222006883	HMMPfam hit to PF01832, Mannosyl-glycoprotein endo-beta-N-ace, score 0.0034
192222006884	Predicted ATPase (AAA+ superfamily) [General function prediction only]; Region: COG1373
192222006885	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222006886	Ferritin-like domain; Region: Ferritin; pfam00210
192222006887	DPS protein, ferritin-like diiron-binding domain; Region: DPS; cd01043
192222006888	dimerization interface [polypeptide binding]; other site
192222006889	DPS ferroxidase diiron center [ion binding]; other site
192222006890	ion pore; other site
192222006891	HMMPfam hit to PF00210, Ferritin-like domain, score 2.5e-39
192222006892	glucose-6-phosphate isomerase; Provisional; Region: PRK03868
192222006893	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_1; cd05015
192222006894	active site
192222006895	dimer interface [polypeptide binding]; other site
192222006896	Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of...; Region: SIS_PGI_2; cd05016
192222006897	dimer interface [polypeptide binding]; other site
192222006898	active site
192222006899	HMMPfam hit to PF00342, Phosphoglucose isomerase,score 1.9e-14
192222006900	PS00174 Phosphoglucose isomerase signature 2
192222006901	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222006902	Prokaryotic UGPase catalyses the synthesis of UDP-glucose; Region: UGPase_prokaryotic; cd02541
192222006903	active site
192222006904	tetramer interface; other site
192222006905	HMMPfam hit to PF00483, Nucleotidyl transferase,score 3.3e-12
192222006906	acetyl-CoA synthetase; Provisional; Region: PRK00174
192222006907	Domain of unknown function (DUF3448); Region: DUF3448; pfam11930
192222006908	AMP-binding enzyme; Region: AMP-binding; cl15778
192222006909	Protein Kinases, catalytic domain; Region: PKc_like; cl09925
192222006910	HMMPfam hit to PF00501, AMP-binding enzyme, score 7.8e-133
192222006911	PS00455  AMP-binding domain signature
192222006912	ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]; Region: MalK; COG3839
192222006913	Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC...; Region: ABC_cobalt_CbiO_domain1; cd03225
192222006914	Walker A/P-loop; other site
192222006915	ATP binding site [chemical binding]; other site
192222006916	Q-loop/lid; other site
192222006917	ABC transporter signature motif; other site
192222006918	Walker B; other site
192222006919	D-loop; other site
192222006920	H-loop/switch region; other site
192222006921	PS00294 Prenyl group binding site (CAAX box)
192222006922	HMMPfam hit to PF00005, ABC transporter, score 5.1e-23
192222006923	PS00211 ABC transporters family signature
192222006924	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006925	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
192222006926	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 7.8e-07
192222006927	ABC-type tungstate transport system, permease component [Coenzyme metabolism]; Region: TupB; COG2998
192222006928	The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily; Region: PBP2_LTTR_substrate; cl11398
192222006929	LamB/YcsF family; Region: LamB_YcsF; cl00664
192222006930	HMMPfam hit to PF03746, LamB/YcsF family, score 8.3e-172
192222006931	Allophanate hydrolase subunit 1; Region: AHS1; pfam02682
192222006932	Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]; Region: DUR1; cl00896
192222006933	HMMPfam hit to PF02682, Allophanate hydrolase subunit, score 3e-62
192222006934	Allophanate hydrolase subunit 2; Region: AHS2; cl00865
192222006935	HMMPfam hit to PF02626, Allophanate hydrolase subunit, score 9.7e-72
192222006936	EamA-like transporter family; Region: EamA; cl01037
192222006937	HMMPfam hit to PF00892, Integral membrane protein DUF6, score 4.2e-19
192222006938	NADPH-dependent FMN reductase; Region: FMN_red; cl00438
192222006939	HMMPfam hit to PF02525, Flavodoxin-like fold, score 2.6e-66
192222006940	Helix-turn-helix domains; Region: HTH; cl00088
192222006941	HMMPfam hit to PF01638, Transcriptional regulator,score 5.1e-29
192222006942	Lipocalin / cytosolic fatty-acid binding protein family; Region: Lipocalin; cl01150
192222006943	PS00213 Lipocalin signature
192222006944	Zn-dependent alcohol dehydrogenases [General function prediction only]; Region: AdhP; COG1064
192222006945	Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283
192222006946	putative NAD(P) binding site [chemical binding]; other site
192222006947	putative substrate binding site [chemical binding]; other site
192222006948	catalytic Zn binding site [ion binding]; other site
192222006949	structural Zn binding site [ion binding]; other site
192222006950	dimer interface [polypeptide binding]; other site
192222006951	HMMPfam hit to PF00107, Zinc-binding dehydrogenase,score 9e-94
192222006952	PS00059 Zinc-containing alcohol dehydrogenases signature
192222006953	Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]; Region: COG0610
192222006954	Type I restriction enzyme R protein N terminus (HSDR_N); Region: HSDR_N; cl14958
192222006955	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region; Region: DEXDc; cd00046
192222006956	ATP binding site [chemical binding]; other site
192222006957	putative Mg++ binding site [ion binding]; other site
192222006958	Domain of unknown function (DUF3387); Region: DUF3387; pfam11867
192222006959	HMMPfam hit to PF04851, Type III restriction enzyme, res subunit, score 7.8e-10
192222006960	HMMPfam hit to PF04313, Type I restriction enzyme R protein N termin, score 6.1e-73
192222006961	AAA domain; Region: AAA_21; pfam13304
192222006962	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222006963	Q-loop/lid; other site
192222006964	ABC transporter signature motif; other site
192222006965	Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]; Region: COG3593
192222006966	Walker B; other site
192222006967	D-loop; other site
192222006968	H-loop/switch region; other site
192222006969	PS00017 ATP/GTP-binding site motif A (P-loop)
192222006970	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
192222006971	Restriction endonuclease S subunits [Defense mechanisms]; Region: HsdS; COG0732
192222006972	Type I restriction modification DNA specificity domain; Region: Methylase_S; pfam01420
192222006973	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 2.5e-06
192222006974	HMMPfam hit to PF01420, Type I restriction modification DNA speci, score 1.3e-31
192222006975	Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]; Region: COG2865
192222006976	Divergent AAA domain; Region: AAA_4; pfam04326
192222006977	ATP-dependent DNA helicase recG C-terminal; Region: HATPase_c_4; pfam13749
192222006978	HMMPfam hit to PF04326, Divergent AAA domain, score 2.9e-18
192222006979	HsdM N-terminal domain; Region: HsdM_N; pfam12161
192222006980	N-6 DNA Methylase; Region: N6_Mtase; pfam02384
192222006981	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222006982	HMMPfam hit to PF02384, N-6 DNA Methylase, score 5e-66
192222006983	PS00092 N-6 Adenine-specific DNA methylases signature
192222006984	HMMPfam hit to PF02506, Type I restriction modification system, M, score 4.6e-94
192222006985	biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs; Region: BVR-B_like_SDR_a; cd05244
192222006986	NADH(P)-binding; Region: NAD_binding_10; pfam13460
192222006987	NAD binding site [chemical binding]; other site
192222006988	substrate binding site [chemical binding]; other site
192222006989	putative active site [active]
192222006990	Helix-turn-helix domains; Region: HTH; cl00088
192222006991	HMMPfam hit to PF01638, Transcriptional regulator,score 1.2e-34
192222006992	1 probable transmembrane helix predicted for Cj1558 by TMHMM2.0 at aa 10-32
192222006993	Original (2000) note: Cj1560, probable membrane protein, len: 274 aa; simlar to hypothetical proteins e.g. Y584_METJA MJ0584 (365 aa), fasta scores; opt: 213 z-score: 246.7 E(): 2.1e-06, 23.5% identity in 294 aa overlap. No Hp match. Note that the similarities continue upstream of the first possible start site (at aa 62), and that this gene may therfore be a pseudogene, with Cj1558 representing the 5' end; Updated (2006) note: Pfam domain PF03773 Predicted permease identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet, so  kept within product function. Also, seven probable transmembrane helix predicted by TMHMM2.0. Functional classification - Transport/binding proteins - Other
192222006994	HMMPfam hit to PF03773, Predicted permease, score 1.8e-21
192222006995	7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37, 44-66, 71-90, 157-179,189-206, 213-235 and 250-272
192222006996	Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cd00090
192222006997	dimerization interface [polypeptide binding]; other site
192222006998	putative DNA binding site [nucleotide binding]; other site
192222006999	putative Zn2+ binding site [ion binding]; other site
192222007000	Predicted transcriptional regulators [Transcription]; Region: SoxR; COG0789
192222007001	Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB; Region: HTH_YyaN; cd01109
192222007002	DNA binding residues [nucleotide binding]
192222007003	putative dimer interface [polypeptide binding]; other site
192222007004	HMMPfam hit to PF00376, MerR family regulatory protein, score 1.4e-08
192222007005	Cache domain; Region: Cache_1; pfam02743
192222007006	Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]; Region: Tar; COG0840
192222007007	Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cd11386
192222007008	dimer interface [polypeptide binding]; other site
192222007009	putative CheW interface [polypeptide binding]; other site
192222007010	2 probable transmembrane helices predicted for Cj1564 by TMHMM2.0 at aa 20-42 and 291-313
192222007011	HMMPfam hit to PF02743, Cache domain, score 7e-06
192222007012	HMMPfam hit to PF00015, Methyl-accepting chemotaxis protein (MCP) s, score 6.4e-21
192222007013	Vi polysaccharide biosynthesis protein TviE; Provisional; Region: PRK15490
192222007014	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.012
192222007015	NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; Region: NuoN; COG1007
192222007016	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187
192222007017	HMMPfam hit to PF00361,NADH-Ubiquinone/plastoquinone (complex I), score 2e-50
192222007018	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007019	proton-translocating NADH-quinone oxidoreductase, chain M; Region: NDH_I_M; TIGR01972
192222007020	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187
192222007021	HMMPfam hit to PF00361,NADH-Ubiquinone/plastoquinone (complex I), score 5.3e-59
192222007022	NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590
192222007023	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; Region: Oxidored_q1_N; pfam00662
192222007024	NADH-Ubiquinone/plastoquinone (complex I), various chains; Region: Oxidored_q1; cl14187
192222007025	HMMPfam hit to PF06455, NADH dehydrogenase subunit 5 C-terminus, score 0.00052
192222007026	HMMPfam hit to PF00361,NADH-Ubiquinone/plastoquinone (complex, score 1e-89
192222007027	HMMPfam hit to PF00662, NADH-Ubiquinone oxidoreductase (complex, score 1.4e-18
192222007028	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007029	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; Region: Oxidored_q2; cl00492
192222007030	HMMPfam hit to PF00420,NADH-ubiquinone/plastoquinone oxidoreduct, score 1.5e-33
192222007031	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007032	NADH dehydrogenase subunit J; Provisional; Region: PRK06433; cl14634
192222007033	NADH:ubiquinone oxidoreductase subunit J; Provisional; Region: PRK06638
192222007034	HMMPfam hit to PF00499,NADH-ubiquinone/plastoquinone oxidoreduct, score 2.8e-07
192222007035	NADH dehydrogenase subunit I; Provisional; Region: PRK05888
192222007036	4Fe-4S binding domain; Region: Fer4; cl02805
192222007037	4Fe-4S binding domain; Region: Fer4; cl02805
192222007038	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 2.9e-07
192222007039	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222007040	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.00011
192222007041	NADH dehydrogenase; Region: NADHdh; cl00469
192222007042	HMMPfam hit to PF00146, NADH dehydrogenase, score 8.9e-82
192222007043	PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1
192222007044	NADH dehydrogenase subunit G; Validated; Region: PRK08493
192222007045	2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis...; Region: fer2; cd00207
192222007046	catalytic loop [active]
192222007047	iron binding site [ion binding]; other site
192222007048	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Region: NADH-G_4Fe-4S_3; cl11210
192222007049	Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a  large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928
192222007050	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 2.2e-05
192222007051	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222007052	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.014
192222007053	HMMPfam hit to PF00111, 2Fe-2S iron-sulfur cluster binding domain, score 2e-07
192222007054	Nickel-dependent hydrogenase; Region: NiFeSe_Hases; cl00417
192222007055	Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Region: Complex1_49kDa; pfam00346
192222007056	HMMPfam hit to PF00346, Respiratory-chain NADH dehydrogenase,, score 6.6e-104
192222007057	Respiratory-chain NADH dehydrogenase, 30 Kd subunit; Region: Complex1_30kDa; cl15771
192222007058	HMMPfam hit to PF00329, Respiratory-chain NADH dehydrogenase,, score 1.7e-36
192222007059	PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature
192222007060	NADH dehydrogenase subunit B; Provisional; Region: PRK14817
192222007061	NADH ubiquinone oxidoreductase, 20 Kd subunit; Region: Oxidored_q6; cl15792
192222007062	HMMPfam hit to PF01058, NADH ubiquinone oxidoreductase, 20 Kd sub, score 1.1e-56
192222007063	NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; Region: Oxidored_q4; cl00535
192222007064	HMMPfam hit to PF00507,NADH-ubiquinone/plastoquinone oxidoreduct, score 6.6e-17
192222007065	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
192222007066	The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257
192222007067	Walker A/P-loop; other site
192222007068	ATP binding site [chemical binding]; other site
192222007069	Q-loop/lid; other site
192222007070	ABC transporter signature motif; other site
192222007071	Walker B; other site
192222007072	D-loop; other site
192222007073	H-loop/switch region; other site
192222007074	HMMPfam hit to PF00005, ABC transporter, score 1.6e-35
192222007075	PS00211 ABC transporters family signature
192222007076	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007077	The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane...; Region: ABC_NikE_OppD_transporters; cd03257
192222007078	cobalt transport protein ATP-binding subunit; Region: cbiO; TIGR01166
192222007079	Walker A/P-loop; other site
192222007080	ATP binding site [chemical binding]; other site
192222007081	Q-loop/lid; other site
192222007082	ABC transporter signature motif; other site
192222007083	Walker B; other site
192222007084	D-loop; other site
192222007085	H-loop/switch region; other site
192222007086	HMMPfam hit to PF00005, ABC transporter, score 1.5e-29
192222007087	PS00211 ABC transporters family signature
192222007088	PS00675 Sigma-54 interaction domain ATP-binding region A signature
192222007089	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007090	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
192222007091	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 3.9e-14
192222007092	nickel ABC transporter, permease subunit NikB; Region: nickel_nikB; TIGR02789
192222007093	Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427
192222007094	HMMPfam hit to PF00528, Binding-protein-dependent transport syst, score 2.8e-47
192222007095	ABC-type dipeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: DdpA; COG0747
192222007096	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_19; cd08518
192222007097	PS00092 N-6 Adenine-specific DNA methylases signature
192222007098	HMMPfam hit to PF00496, Bacterial extracellular solute-binding prot, score 7.9e-72
192222007099	FAD/FMN-containing dehydrogenases [Energy production and conversion]; Region: GlcD; COG0277
192222007100	FAD binding domain; Region: FAD_binding_4; pfam01565
192222007101	Fe-S oxidoreductase [Energy production and conversion]; Region: GlpC; COG0247
192222007102	PS00551 Prokaryotic molybdopterin oxidoreductases signature 1
192222007103	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222007104	HMMPfam hit to PF00037, 4Fe-4S binding domain,score 0.0085
192222007105	PS00198 4Fe-4S ferredoxins, iron-sulfur binding region signature
192222007106	HMMPfam hit to PF02913, FAD linked oxidases,C-terminal domain, score 1.6e-70
192222007107	HMMPfam hit to PF01565, FAD binding domain, score 3.3e-39
192222007108	Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen...; Region: globin; cd01040
192222007109	heme-binding site [chemical binding]; other site
192222007110	HMMPfam hit to PF00042, Globin, score 3.3e-12
192222007111	multidrug transporter membrane component/ATP-binding component; Provisional; Region: PRK10522
192222007112	ABC transporter transmembrane region; Region: ABC_membrane; cl00549
192222007113	The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a...; Region: ABCC_MRP_Like; cd03228
192222007114	Walker A/P-loop; other site
192222007115	ATP binding site [chemical binding]; other site
192222007116	Q-loop/lid; other site
192222007117	ABC transporter signature motif; other site
192222007118	Walker B; other site
192222007119	D-loop; other site
192222007120	H-loop/switch region; other site
192222007121	HMMPfam hit to PF00005, ABC transporter, score 6.3e-33
192222007122	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007123	HMMPfam hit to PF00664, ABC transporter transmembrane region, score 0.00019
192222007124	metabolite-proton symporter; Region: 2A0106; TIGR00883
192222007125	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222007126	putative substrate translocation pore; other site
192222007127	HMMPfam hit to PF00083, Sugar (and other) transporter, score 2e-19
192222007128	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 4.4e-21
192222007129	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007130	PS00217 Sugar transport proteins signature 2
192222007131	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
192222007132	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.1e-20
192222007133	S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the...; Region: S1_IF1; cd04451
192222007134	rRNA binding site [nucleotide binding]; other site
192222007135	predicted 30S ribosome binding site; other site
192222007136	HMMPfam hit to PF00575, S1 RNA binding domain,score 1.1e-10
192222007137	Ribosomal protein L36; Region: Ribosomal_L36; cl00380
192222007138	HMMPfam hit to PF00444, Ribosomal protein L36,score 7.5e-17
192222007139	PS00828 Ribosomal protein L36 signature
192222007140	Ribosomal protein S13/S18; Region: Ribosomal_S13; cl00331
192222007141	Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]; Region: RpsM; COG0099
192222007142	HMMPfam hit to PF00416, Ribosomal protein S13/S18,score 1.5e-50
192222007143	PS00646 Ribosomal protein S13 signature
192222007144	Ribosomal protein S11; Region: Ribosomal_S11; cl00332
192222007145	HMMPfam hit to PF00411, Ribosomal protein S11,score 6.2e-56
192222007146	30S ribosomal protein S4; Validated; Region: rpsD; PRK05327
192222007147	Ribosomal protein S4/S9 N-terminal domain; Region: Ribosomal_S4; pfam00163
192222007148	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cd00165
192222007149	RNA binding surface [nucleotide binding]; other site
192222007150	HMMPfam hit to PF00163, Ribosomal protein S4/S9 N-terminal domai, score 5.4e-25
192222007151	PS00632 Ribosomal protein S4 signature
192222007152	HMMPfam hit to PF01479, S4 domain, score 1.3e-23
192222007153	DNA-directed RNA polymerase subunit alpha; Provisional; Region: PRK05182
192222007154	N-terminal domain of the Alpha subunit of Bacterial RNA polymerase; Region: RNAP_alpha_NTD; cd06928
192222007155	alphaNTD homodimer interface [polypeptide binding]; other site
192222007156	alphaNTD - beta interaction site [polypeptide binding]; other site
192222007157	alphaNTD - beta' interaction site [polypeptide binding]; other site
192222007158	Bacterial RNA polymerase, alpha chain C terminal domain; Region: RNA_pol_A_CTD; cl11613
192222007159	HMMPfam hit to PF01193, RNA polymerase Rpb3/Rpb11 dimerisation, score 3.8e-15
192222007160	HMMPfam hit to PF01000, RNA polymerase Rpb3/RpoA insert domain, score 4.9e-43
192222007161	HMMPfam hit to PF03118, Bacterial RNA polymerase,alpha chain C, score 1.2e-22
192222007162	Ribosomal protein L17; Region: Ribosomal_L17; cl00356
192222007163	HMMPfam hit to PF01196, Ribosomal protein L17,score 1.3e-53
192222007164	PS01167 Ribosomal protein L17 signature
192222007165	ATP phosphoribosyltransferase; Reviewed; Region: hisG; PRK00489
192222007166	ATP phosphoribosyltransferase; Region: HisG; cl15266
192222007167	HisG, C-terminal domain; Region: HisG_C; cl06867
192222007168	HMMPfam hit to PF01634, ATP phosphoribosyltransferase, score 4.3e-67
192222007169	histidinol dehydrogenase; Region: hisD; TIGR00069
192222007170	Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent...; Region: Histidinol_dh; cd06572
192222007171	NAD binding site [chemical binding]; other site
192222007172	dimerization interface [polypeptide binding]; other site
192222007173	product binding site; other site
192222007174	substrate binding site [chemical binding]; other site
192222007175	zinc binding site [ion binding]; other site
192222007176	catalytic residues [active]
192222007177	HMMPfam hit to PF00815, Histidinol dehydrogenase,score 1.1e-233
192222007178	PS00611 Histidinol dehydrogenase signature
192222007179	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007180	imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional; Region: PRK05446
192222007181	Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others; Region: HAD_like; cd01427
192222007182	active site
192222007183	motif I; other site
192222007184	motif II; other site
192222007185	Imidazoleglycerol-phosphate dehydratase; Region: IGPD; cd07914
192222007186	putative active site pocket [active]
192222007187	4-fold oligomerization interface [polypeptide binding]; other site
192222007188	metal binding residues [ion binding]; metal-binding site
192222007189	3-fold/trimer interface [polypeptide binding]; other site
192222007190	HMMPfam hit to PF00475, Imidazoleglycerol-phosphate dehydratase, score 7e-88
192222007191	PS00954 Imidazoleglycerol-phosphate dehydratase signature 1
192222007192	PS00955 Imidazoleglycerol-phosphate dehydratase signature 2
192222007193	imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13170
192222007194	Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS); Region: GATase1_IGP_Synthase; cd01748
192222007195	putative active site [active]
192222007196	oxyanion strand; other site
192222007197	catalytic triad [active]
192222007198	HMMPfam hit to PF00117, Glutamine amidotransferase class-I, score 4.8e-34
192222007199	PS00442 Glutamine amidotransferases class-I active site
192222007200	Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]; Region: HisA; COG0106
192222007201	HisA.  Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1...; Region: HisA; cd04732
192222007202	catalytic residues [active]
192222007203	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 2.9e-103
192222007204	Protein of unknown function (DUF511); Region: DUF511; cl01114
192222007205	HMMPfam hit to PF04373, Protein of unknown function (DUF511), score 2.8e-201
192222007206	The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)...; Region: HisF; cd04731
192222007207	Histidine biosynthesis protein; Region: His_biosynth; pfam00977
192222007208	substrate binding site [chemical binding]; other site
192222007209	glutamase interaction surface [polypeptide binding]; other site
192222007210	HMMPfam hit to PF00977, Histidine biosynthesis protein, score 2.6e-115
192222007211	Phosphoribosyl-AMP cyclohydrolase; Region: PRA-CH; cl00344
192222007212	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; Reviewed; Region: PRK02759
192222007213	MazG nucleotide pyrophosphohydrolase domain; Region: MazG; cl00345
192222007214	HMMPfam hit to PF01502, Phosphoribosyl-AMP cyclohydrolase, score 5.5e-43
192222007215	HMMPfam hit to PF01503, Phosphoribosyl-ATP pyrophosphohydrolase, score 2.6e-44
192222007216	Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]; Region: DapD; COG2171
192222007217	Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal...; Region: LbH_THP_succinylT_putative; cd04649
192222007218	putative trimer interface [polypeptide binding]; other site
192222007219	putative CoA binding site [chemical binding]; other site
192222007220	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007221	antiporter inner membrane protein; Provisional; Region: PRK11670
192222007222	Domain of unknown function DUF59; Region: DUF59; cl00941
192222007223	MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions...; Region: MRP-like; cd02037
192222007224	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007225	HMMPfam hit to PF01883, Domain of unknown function DUF59, score 2.9e-05
192222007226	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional; Region: ispDF; PRK09382
192222007227	CDP-ME synthetase is involved in mevalonate-independent isoprenoid production; Region: CDP-ME_synthetase; cd02516
192222007228	substrate binding site; other site
192222007229	dimer interface; other site
192222007230	MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis; Region: MECDP_synthase; cd00554
192222007231	homotrimer interaction site [polypeptide binding]; other site
192222007232	zinc binding site [ion binding]; other site
192222007233	CDP-binding sites; other site
192222007234	HMMPfam hit to PF01128, Uncharacterized protein family UPF0007, score 1.3e-11
192222007235	HMMPfam hit to PF02542, YgbB family, score 1.9e-73
192222007236	FOG: CheY-like receiver [Signal transduction mechanisms]; Region: CheY; COG0784
192222007237	Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; Region: REC; cd00156
192222007238	active site
192222007239	intermolecular recognition site; other site
192222007240	dimerization interface [polypeptide binding]; other site
192222007241	HMMPfam hit to PF00072, Response regulator receiver domain, score 8.9e-05
192222007242	ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]; Region: MET3; COG2046
192222007243	nucleotidyl transferase superfamily; Region: nt_trans; cl00015
192222007244	active site
192222007245	nucleotide binding site [chemical binding]; other site
192222007246	HIGH motif; other site
192222007247	KMSKS motif; other site
192222007248	Phosphatidylglycerophosphatase A; a bacterial membrane-associated enzyme involved in lipid metabolism; Region: PgpA; cd06971
192222007249	tetramer interfaces [polypeptide binding]; other site
192222007250	binuclear metal-binding site [ion binding]; other site
192222007251	HMMPfam hit to PF04608,Phosphatidylglycerophosphatase A, score 2.9e-86
192222007252	3 probable transmembrane helices predicted for Cj1610 by TMHMM2.0 at aa 20-54, 80-102 and 136-158
192222007253	Ribosomal protein S20; Region: Ribosomal_S20p; cl00384
192222007254	HMMPfam hit to PF01649, Ribosomal protein S20,score 1.5e-27
192222007255	peptide chain release factor 1; Validated; Region: prfA; PRK00591
192222007256	RF-1 domain; Region: RF-1; cl02875
192222007257	RF-1 domain; Region: RF-1; cl02875
192222007258	HMMPfam hit to PF03462, PCRF domain, score 3.3e-64
192222007259	HMMPfam hit to PF00472, Peptidyl-tRNA hydrolase domain, score 3.8e-74
192222007260	PS00745 Prokaryotic-type class I peptide chain release factors signature
192222007261	Protein of unknown function (DUF2470); Region: DUF2470; pfam10615
192222007262	heme oxygenase, HugZ family; Region: heme_ox_HugZ; TIGR04109
192222007263	Pyridoxine 5'-phosphate (PNP) oxidase-like proteins; Region: PNPOx_like; cl00381
192222007264	HMMPfam hit to PF01243, Pyridoxamine 5'-phosphate oxidase, score 1.5e-17
192222007265	Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]; Region: CirA; COG1629
192222007266	TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel; Region: ligand_gated_channel; cd01347
192222007267	N-terminal plug; other site
192222007268	ligand-binding site [chemical binding]; other site
192222007269	HMMPfam hit to PF07715, TonB-dependent Receptor Plug Domain, score 2e-14
192222007270	HMMPfam hit to PF00593, TonB dependent receptor,score 3.8e-21
192222007271	ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]; Region: FepG; COG4779
192222007272	Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of...; Region: TM_ABC_iron-siderophores_like; cd06550
192222007273	ABC-ATPase subunit  interface; other site
192222007274	dimer interface [polypeptide binding]; other site
192222007275	putative PBP binding regions; other site
192222007276	9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31, 63-85, 92-110, 115-137,144-166, 186-205, 236-258, 273-290 and 297-319
192222007277	HMMPfam hit to PF01032, FecCD transport family,score 7.2e-77
192222007278	ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]; Region: FepC; COG1120
192222007279	ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC...; Region: ABC_Iron-Siderophores_B12_Hemin; cd03214
192222007280	Walker A/P-loop; other site
192222007281	ATP binding site [chemical binding]; other site
192222007282	Q-loop/lid; other site
192222007283	ABC transporter signature motif; other site
192222007284	Walker B; other site
192222007285	D-loop; other site
192222007286	H-loop/switch region; other site
192222007287	HMMPfam hit to PF00005, ABC transporter, score 2e-47
192222007288	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007289	PS00211 ABC transporters family signature
192222007290	Periplasmic binding protein YvrC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct...; Region: YvrC; cd01143
192222007291	Periplasmic binding protein; Region: Peripla_BP_2; pfam01497
192222007292	putative binding site residues; other site
192222007293	HMMPfam hit to PF01497, Periplasmic binding protein, score 2e-31
192222007294	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222007295	FeS/SAM binding site; other site
192222007296	Domain of unknown function (DUF4008); Region: DUF4008; cl14869
192222007297	HMMPfam hit to PF04055, Radical SAM superfamily,score 1.7e-06
192222007298	alpha-ketoglutarate transporter; Provisional; Region: PRK10406
192222007299	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222007300	putative substrate translocation pore; other site
192222007301	HMMPfam hit to PF00083, Sugar (and other) transporter, score 4e-45
192222007302	12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35, 50-72, 85-102, 112-134,155-174, 184-203, 230-252, 267-289, 298-317, 327-349,361-383 and 393-412
192222007303	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 7.3e-21
192222007304	PS00217 Sugar transport proteins signature 2
192222007305	A/G-specific adenine glycosylase; Region: mutY; TIGR01084
192222007306	endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases; Region: ENDO3c; cd00056
192222007307	minor groove reading motif; other site
192222007308	helix-hairpin-helix signature motif; other site
192222007309	substrate binding pocket [chemical binding]; other site
192222007310	active site
192222007311	HMMPfam hit to PF00730, HhH-GPD superfamily base excision DNA repair, score 2.5e-23
192222007312	HMMPfam hit to PF00633, Helix-hairpin-helix motif,score 9.8e-07
192222007313	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007314	1 probable transmembrane helix predicted for Cj1621 by TMHMM2.0 at aa 7-29
192222007315	riboflavin biosynthesis protein RibD; Region: eubact_ribD; TIGR00326
192222007316	Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the...; Region: Riboflavin_deaminase-reductase; cd01284
192222007317	catalytic motif [active]
192222007318	Zn binding site [ion binding]; other site
192222007319	Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5; Region: DHFR; cl00161
192222007320	HMMPfam hit to PF00383, Cytidine and deoxycytidylate deaminase, score 4.9e-27
192222007321	2 probable transmembrane helices predicted for Cj1623 by TMHMM2.0 at aa 97-116 and 121-143
192222007322	L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720
192222007323	Serine dehydratase beta chain; Region: SDH_beta; pfam03315
192222007324	Serine dehydratase alpha chain; Region: SDH_alpha; cl12120
192222007325	HMMPfam hit to PF03313, Serine dehydratase alpha chain, score 8.3e-143
192222007326	HMMPfam hit to PF03315, Serine dehydratase beta chain, score 8.4e-47
192222007327	Amino acid permeases [Amino acid transport and metabolism]; Region: SdaC; COG0814
192222007328	Transmembrane amino acid transporter protein; Region: Aa_trans; cl15776
192222007329	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007330	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007331	Protein of unknown function (DUF2874); Region: DUF2874; pfam11396
192222007332	Protein of unknown function (DUF2874); Region: DUF2874; pfam11396
192222007333	Domain of unknown function (DUF4261); Region: DUF4261; pfam14080
192222007334	MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; cl00568
192222007335	HMMPfam hit to PF01618, MotA/TolQ/ExbB proton channel family, score 9.2e-42
192222007336	3 probable transmembrane helices predicted for Cj1628 by TMHMM2.0 at aa 10-28, 61-83 and 103-125
192222007337	Biopolymer transport protein ExbD/TolR; Region: ExbD; cl00537
192222007338	HMMPfam hit to PF02472, Biopolymer transport protein ExbD/TolR, score 6.5e-41
192222007339	1 probable transmembrane helix predicted for Cj1629 by TMHMM2.0 at aa 12-34
192222007340	Gram-negative bacterial tonB protein; Region: TonB; cl10048
192222007341	1 probable transmembrane helix predicted for Cj1630 by TMHMM2.0 at aa 12-29
192222007342	HMMPfam hit to PF03544, Gram-negative bacterial tonB protein, score 3e-13
192222007343	Protein of unknown function (DUF3135); Region: DUF3135; pfam11333
192222007344	PS00018 EF-hand calcium-binding domain
192222007345	Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: TrmU; COG0482
192222007346	ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide; Region: ThiI; cd01712
192222007347	Ligand Binding Site [chemical binding]; other site
192222007348	PS00190 Cytochrome c family heme-binding site signature
192222007349	Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway; Region: Chorismate_synthase; cd07304
192222007350	Tetramer interface [polypeptide binding]; other site
192222007351	active site
192222007352	FMN-binding site [chemical binding]; other site
192222007353	HMMPfam hit to PF01264, Chorismate synthase, score 6.3e-158
192222007354	PS00788 Chorismate synthase signature 2
192222007355	PS00787 Chorismate synthase signature 1
192222007356	ribonuclease III; Reviewed; Region: rnc; PRK00102
192222007357	RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in...; Region: RIBOc; cd00593
192222007358	dimerization interface [polypeptide binding]; other site
192222007359	active site
192222007360	metal binding site [ion binding]; metal-binding site
192222007361	Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III; Region: DSRM; cd00048
192222007362	dsRNA binding site [nucleotide binding]; other site
192222007363	HMMPfam hit to PF00035, Double-stranded RNA binding motif, score 2.1e-19
192222007364	HMMPfam hit to PF00636, RNase3 domain, score 1.2e-41
192222007365	PS00517 Ribonuclease III family signature
192222007366	RNase HI family found mainly in prokaryotes; Region: RNase_HI_prokaryote_like; cd09278
192222007367	RNA/DNA hybrid binding site [nucleotide binding]; other site
192222007368	active site
192222007369	HMMPfam hit to PF00075, RNase H, score 3.7e-46
192222007370	Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; Region: TPR; cd00189
192222007371	TPR motif; other site
192222007372	binding surface
192222007373	Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have...; Region: ZZ; cl00295
192222007374	Zinc-binding sites [ion binding]; other site
192222007375	zinc cluster 1 [ion binding]; other site
192222007376	putative charged binding surface; other site
192222007377	putative hydrophobic binding surface; other site
192222007378	zinc cluster 2 [ion binding]; other site
192222007379	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.0026
192222007380	1 probable transmembrane helix predicted for Cj1637c by TMHMM2.0 at aa 12-34
192222007381	DNA primase, catalytic core; Region: dnaG; TIGR01391
192222007382	CHC2 zinc finger; Region: zf-CHC2; cl15369
192222007383	DNA primase catalytic core, N-terminal domain; Region: Toprim_N; pfam08275
192222007384	TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG...; Region: TOPRIM_DnaG_primases; cd03364
192222007385	active site
192222007386	metal binding site [ion binding]; metal-binding site
192222007387	interdomain interaction site; other site
192222007388	HMMPfam hit to PF01807, CHC2 zinc finger, score 4.2e-50
192222007389	HMMPfam hit to PF01751, Toprim domain, score 3.7e-18
192222007390	NifU-like domain; Region: NifU; cl00484
192222007391	HMMPfam hit to PF01106, NifU-like domain, score 2.7e-20
192222007392	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007393	UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139
192222007394	Mur ligase middle domain; Region: Mur_ligase_M; pfam08245
192222007395	Mur ligase family, glutamate ligase domain; Region: Mur_ligase_C; pfam02875
192222007396	HMMPfam hit to PF01225, Mur ligase family,catalytic domain, score 6.2e-36
192222007397	PS01011 Folylpolyglutamate synthase signature 1
192222007398	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007399	HMMPfam hit to PF02875, Mur ligase family,glutamate ligase doma, score 9.8e-27
192222007400	YbaB/EbfC DNA-binding family; Region: YbaB_DNA_bd; cl00494
192222007401	HMMPfam hit to PF02575, Uncharacterised BCR, YbaB family COG0718, score 9.9e-35
192222007402	PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated; Region: PDZ; cl00117
192222007403	PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ...; Region: PDZ_metalloprotease; cd00989
192222007404	Trans-Isoprenyl Diphosphate Synthases, head-to-tail; Region: Trans_IPPS_HT; cd00685
192222007405	substrate binding pocket [chemical binding]; other site
192222007406	chain length determination region; other site
192222007407	substrate-Mg2+ binding site; other site
192222007408	catalytic residues [active]
192222007409	aspartate-rich region 1; other site
192222007410	active site lid residues [active]
192222007411	aspartate-rich region 2; other site
192222007412	HMMPfam hit to PF00348, Polyprenyl synthetase,score 8.6e-63
192222007413	PS00723 Polyprenyl synthetases signature 1
192222007414	PS00444 Polyprenyl synthetases signature 2
192222007415	transketolase; Reviewed; Region: PRK05899
192222007416	Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the...; Region: TPP_TK; cd02012
192222007417	TPP-binding site [chemical binding]; other site
192222007418	dimer interface [polypeptide binding]; other site
192222007419	Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins; Region: TPP_PYR_DXS_TK_like; cd07033
192222007420	PYR/PP interface [polypeptide binding]; other site
192222007421	dimer interface [polypeptide binding]; other site
192222007422	TPP binding site [chemical binding]; other site
192222007423	Transketolase, C-terminal domain; Region: Transketolase_C; pfam02780
192222007424	HMMPfam hit to PF00456, Transketolase, thiamine diphosphate b, score 1.1e-148
192222007425	PS00801 Transketolase signature 1
192222007426	HMMPfam hit to PF02779, Transketolase, pyridine binding domai, score 3.3e-50
192222007427	PS00802 Transketolase signature 2
192222007428	HMMPfam hit to PF02780, Transketolase, C-terminal domain, score 0.00035
192222007429	Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors; Region: STAS; cl00604
192222007430	Permease; Region: Permease; cl00510
192222007431	6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141, 161-183, 193-215,259-281, 306-325 and 346-368
192222007432	HMMPfam hit to PF02405, Domain of unknown function DUF140, score 1.4e-80
192222007433	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007434	ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2A; COG1127
192222007435	P-loop containing Nucleoside Triphosphate Hydrolases; Region: P-loop_NTPase; cl09099
192222007436	Walker A/P-loop; other site
192222007437	ATP binding site [chemical binding]; other site
192222007438	Q-loop/lid; other site
192222007439	ABC transporter signature motif; other site
192222007440	Walker B; other site
192222007441	D-loop; other site
192222007442	H-loop/switch region; other site
192222007443	HMMPfam hit to PF00005, ABC transporter, score 4e-51
192222007444	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007445	PS00211 ABC transporters family signature
192222007446	ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]; Region: Ttg2C; COG1463
192222007447	mce related protein; Region: MCE; pfam02470
192222007448	1 probable transmembrane helix predicted for Cj1648 by TMHMM2.0 at aa 7-29
192222007449	HMMPfam hit to PF02470, mce related protein, score 0.00095
192222007450	Protein of unknown function (DUF330); Region: DUF330; cl01135
192222007451	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007452	Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides; Region: MetAP1; cd01086
192222007453	active site
192222007454	HMMPfam hit to PF00557, metallopeptidase family M24, score 1.5e-59
192222007455	PS00680 Methionine aminopeptidase subfamily 1 signature
192222007456	Asp/Glu/Hydantoin racemase; Region: Asp_Glu_race; cl00518
192222007457	HMMPfam hit to PF01177, Asp/Glu/Hydantoin racemase,score 2e-90
192222007458	PS00924 Aspartate and glutamate racemases signature 2
192222007459	PS00923 Aspartate and glutamate racemases signature 1
192222007460	PS00225 Crystallins beta and gamma 'Greek key' motif signature
192222007461	NlpC/P60 family; Region: NLPC_P60; cl11438
192222007462	HMMPfam hit to PF00877, NlpC/P60 family, score 7.8e-40
192222007463	1 probable transmembrane helix predicted for Cj1653c by TMHMM2.0 at aa 4-23
192222007464	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007465	Na+/H+ antiporter 1; Region: Na_H_antiport_1; cl01133
192222007466	HMMPfam hit to PF06965, Na+/H+ antiporter, score 2.2e-229
192222007467	PS00284 Serpins signature
192222007468	Na+/H+ antiporter 1; Region: Na_H_antiport_1; cl01133
192222007469	HMMPfam hit to PF06965, Na+/H+ antiporter, score 1.1e-239
192222007470	Putative motility protein; Region: YjfB_motility; pfam14070
192222007471	Iron permease FTR1 family; Region: FTR1; cl00475
192222007472	HMMPfam hit to PF03239, Iron permease FTR1 family,score 2.3e-08
192222007473	7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458, 470-492, 502-524,551-573, 583-604, 616-633 and 668-685
192222007474	Fe2+ transport protein; Region: Iron_transport; cl01377
192222007475	1 probable transmembrane helix predicted for Cj1659 by TMHMM2.0 at aa 5-27
192222007476	Predicted membrane protein [Function unknown]; Region: COG4393
192222007477	Predicted membrane protein (DUF2318); Region: DUF2318; pfam10080
192222007478	Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor...; Region: Ribosomal_L24e_L24; cl00909
192222007479	8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21, 28-50, 60-79, 86-105,120-142, 154-176, 196-218 and 244-266
192222007480	HMMPfam hit to PF04945, YHS domain, score 1.1e-17
192222007481	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
192222007482	FtsX-like permease family; Region: FtsX; cl15850
192222007483	4 probable transmembrane helices predicted for Cj1661 by TMHMM2.0 at aa 20-42, 303-325, 359-381 and 391-413
192222007484	HMMPfam hit to PF02687, Predicted permease, score 2.3e-29
192222007485	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007486	MacB-like periplasmic core domain; Region: MacB_PCD; pfam12704
192222007487	FtsX-like permease family; Region: FtsX; cl15850
192222007488	4 probable transmembrane helices predicted for Cj1662 by TMHMM2.0 at aa 21-43, 250-272, 301-323 and 333-355
192222007489	HMMPfam hit to PF02687, Predicted permease, score 1.4e-30
192222007490	ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]; Region: SalX; COG1136
192222007491	This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together...; Region: ABC_MJ0796_Lo1CDE_FtsE; cd03255
192222007492	Walker A/P-loop; other site
192222007493	ATP binding site [chemical binding]; other site
192222007494	Q-loop/lid; other site
192222007495	ABC transporter signature motif; other site
192222007496	Walker B; other site
192222007497	D-loop; other site
192222007498	H-loop/switch region; other site
192222007499	HMMPfam hit to PF00005, ABC transporter, score 1.1e-63
192222007500	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007501	PS00211 ABC transporters family signature
192222007502	TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a...; Region: TlpA_like_family; cd02966
192222007503	catalytic residues [active]
192222007504	PS00194 Thioredoxin family active site
192222007505	Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; Region: Thioredoxin_like; cl00388
192222007506	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007507	Protein of unknown function, DUF; Region: DUF411; cl01142
192222007508	HMMPfam hit to PF04214, Protein of unknown function, DUF, score 4.7e-60
192222007509	1 probable transmembrane helix predicted for Cj1668c by TMHMM2.0 at aa 4-26
192222007510	DNA ligase; Provisional; Region: PRK09125
192222007511	Adenylation domain of kDNA ligases and similar proteins; Region: Adenylation_kDNA_ligase_like; cd07896
192222007512	DNA binding site [nucleotide binding]
192222007513	active site
192222007514	The Oligonucleotide/oligosaccharide binding (OB)-fold domain of kDNA ligase-like ATP-dependent DNA ligases is a DNA-binding module that is part of the catalytic core unit; Region: OBF_kDNA_ligase_like; cd08041
192222007515	DNA binding site [nucleotide binding]
192222007516	HMMPfam hit to PF01068, ATP dependent DNA ligase domain, score 8.1e-08
192222007517	PS00333 ATP-dependent DNA ligase signature 2
192222007518	AMIN domain; Region: AMIN; pfam11741
192222007519	1 probable transmembrane helix predicted for Cj1671c by TMHMM2.0 at aa 2-21
192222007520	enolase; Provisional; Region: eno; PRK00077
192222007521	Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions; Region: enolase; cd03313
192222007522	dimer interface [polypeptide binding]; other site
192222007523	metal binding site [ion binding]; metal-binding site
192222007524	substrate binding pocket [chemical binding]; other site
192222007525	HMMPfam hit to PF00113, Enolase, C-terminal TIM barrel domain, score 5e-135
192222007526	HMMPfam hit to PF03952, Enolase, N-terminal domain,score 8.4e-59
192222007527	recombinase A; Provisional; Region: recA; PRK09354
192222007528	RecA is a  bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response.  RecA couples ATP hydrolysis to DNA strand exchange; Region: recA; cd00983
192222007529	hexamer interface [polypeptide binding]; other site
192222007530	Walker A motif; other site
192222007531	ATP binding site [chemical binding]; other site
192222007532	Walker B motif; other site
192222007533	HMMPfam hit to PF00154, recA bacterial DNA recombination protein, score 1.2e-237
192222007534	PS00321 recA signature
192222007535	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007536	NMT1-like family; Region: NMT1_2; cl15260
192222007537	HMMPfam hit to PF02642, Uncharacterized ACR,COG2107, score 1.9e-107
192222007538	Bacterial export proteins, family 3; Region: Bac_export_3; cl00867
192222007539	HMMPfam hit to PF01313, Bacterial export proteins,family, score 4.6e-32
192222007540	2 probable transmembrane helices predicted for Cj1675 by TMHMM2.0 at aa 15-37 and 49-71
192222007541	UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional; Region: murB; PRK13904
192222007542	UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; Region: MurB_C; pfam02873
192222007543	HMMPfam hit to PF02873,UDP-N-acetylenolpyruvoylglucosamine reductas, score 6.6e-30
192222007544	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl01155
192222007545	HMMPfam hit to PF03797, Autotransporter beta-domain, score 5.9e-38
192222007546	TPR repeat; Region: TPR_11; pfam13414
192222007547	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 2.8
192222007548	HMMPfam hit to PF07719, Tetratricopeptide repeat,score 0.00092
192222007549	CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine...; Region: CysQ; cd01638
192222007550	active site
192222007551	HMMPfam hit to PF00459, Inositol monophosphatase family, score 3.5e-29
192222007552	PS00629 Inositol monophosphatase family signature 1
192222007553	Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS...; Region: EcCS_like; cd06114
192222007554	dimer interface [polypeptide binding]; other site
192222007555	Citrate synthase; Region: Citrate_synt; pfam00285
192222007556	active site
192222007557	citrylCoA binding site [chemical binding]; other site
192222007558	NADH binding [chemical binding]; other site
192222007559	cationic pore residues; other site
192222007560	oxalacetate/citrate binding site [chemical binding]; other site
192222007561	coenzyme A binding site [chemical binding]; other site
192222007562	catalytic triad [active]
192222007563	HMMPfam hit to PF00285, Citrate synthase, score 2.2e-174
192222007564	PS00480 Citrate synthase signature
192222007565	Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]; Region: KefB; cl10482
192222007566	Sodium/hydrogen exchanger family; Region: Na_H_Exchanger; pfam00999
192222007567	biotin synthase; Provisional; Region: PRK08508
192222007568	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222007569	FeS/SAM binding site; other site
192222007570	Biotin and Thiamin Synthesis associated domain; Region: BATS; cl06149
192222007571	HMMPfam hit to PF06968, Biotin and Thiamin Synthesis associated d, score 1e-25
192222007572	HMMPfam hit to PF04055, Radical SAM superfamily,score 9.8e-20
192222007573	DNA topoisomerase I; Validated; Region: PRK05582
192222007574	TOPRIM_TopoIA_TopoI: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to Escherichia coli DNA topoisomerase I.   Type IA DNA topoisomerases remove (relax) negative supercoils in the...; Region: TOPRIM_TopoIA_TopoI; cd03363
192222007575	active site
192222007576	interdomain interaction site; other site
192222007577	putative metal-binding site [ion binding]; other site
192222007578	nucleotide binding site [chemical binding]; other site
192222007579	DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA...; Region: TOP1Ac; cd00186
192222007580	domain I; other site
192222007581	DNA binding groove [nucleotide binding]
192222007582	phosphate binding site [ion binding]; other site
192222007583	domain II; other site
192222007584	domain III; other site
192222007585	nucleotide binding site [chemical binding]; other site
192222007586	catalytic site [active]
192222007587	domain IV; other site
192222007588	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
192222007589	Topoisomerase DNA binding C4 zinc finger; Region: zf-C4_Topoisom; pfam01396
192222007590	HMMPfam hit to PF01396, Topoisomerase DNA binding C4 zinc fing, score 0.0034
192222007591	HMMPfam hit to PF01396, Topoisomerase DNA binding C4 zinc fing, score 8.7e-14
192222007592	HMMPfam hit to PF01396, Topoisomerase DNA binding C4 zinc fing, score 4e-17
192222007593	HMMPfam hit to PF01131, DNA topoisomerase, score 3.7e-168
192222007594	PS00396 Prokaryotic DNA topoisomerase I active site
192222007595	HMMPfam hit to PF01751, Toprim domain, score 4.5e-32
192222007596	The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of...; Region: MFS; cd06174
192222007597	putative substrate translocation pore; other site
192222007598	12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53, 80-102, 115-137, 141-160,172-194, 199-221, 240-259, 279-301, 308-327, 332-354,367-389 and 399-416
192222007599	HMMPfam hit to PF07690, Major Facilitator Superfamily, score 2.5e-47
192222007600	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007601	preprotein translocase subunit SecY; Reviewed; Region: secY; PRK09204
192222007602	SecY translocase; Region: SecY; pfam00344
192222007603	HMMPfam hit to PF00344, eubacterial secY protein,score 5.2e-113
192222007604	PS00095 C-5 cytosine-specific DNA methylases C-terminal signature
192222007605	PS00756 Protein secY signature 2
192222007606	Ribosomal protein L18e/L15; Region: Ribosomal_L18e; cl12022
192222007607	HMMPfam hit to PF01305, Ribosomal protein L15 amino terminal re, score 1.5e-41
192222007608	Ribosomal protein S5, N-terminal domain; Region: Ribosomal_S5; pfam00333
192222007609	Ribosomal protein S5, C-terminal domain; Region: Ribosomal_S5_C; pfam03719
192222007610	HMMPfam hit to PF03719, Ribosomal protein S5,C-terminal domai, score 1.8e-23
192222007611	HMMPfam hit to PF00333, Ribosomal protein S5,N-terminal domai, score 6.4e-34
192222007612	PS00585 Ribosomal protein S5 signature
192222007613	Ribosomal L18/L5e:  L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA...; Region: Ribosomal_L18_L5e; cd00432
192222007614	5S rRNA interface [nucleotide binding]; other site
192222007615	23S rRNA interface [nucleotide binding]; other site
192222007616	L5 interface [polypeptide binding]; other site
192222007617	HMMPfam hit to PF00861, Ribosomal L18p/L5e family,score 8.6e-27
192222007618	50S ribosomal protein L6; Validated; Region: rplF; PRK05498
192222007619	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
192222007620	Ribosomal protein L6; Region: Ribosomal_L6; pfam00347
192222007621	HMMPfam hit to PF00347, Ribosomal protein L6, score 2.6e-30
192222007622	PS00525 Ribosomal protein L6 signature 1
192222007623	HMMPfam hit to PF00347, Ribosomal protein L6, score 3e-07
192222007624	Ribosomal protein S8; Region: Ribosomal_S8; cl00330
192222007625	HMMPfam hit to PF00410, Ribosomal protein S8, score 2.7e-52
192222007626	PS00294 Prenyl group binding site (CAAX box)
192222007627	PS00053 Ribosomal protein S8 signature
192222007628	Ribosomal protein S14p/S29e; Region: Ribosomal_S14; cl00355
192222007629	HMMPfam hit to PF00253, Ribosomal protein S14p/S29e, score 6.5e-20
192222007630	PS00527 Ribosomal protein S14 signature
192222007631	50S ribosomal protein L5; Validated; Region: rplE; PRK00010
192222007632	Ribosomal protein L5; Region: Ribosomal_L5; pfam00281
192222007633	ribosomal L5P family C-terminus; Region: Ribosomal_L5_C; pfam00673
192222007634	HMMPfam hit to PF00673, ribosomal L5P family C-terminus, score 6e-47
192222007635	HMMPfam hit to PF00281, Ribosomal protein L5, score 2.1e-21
192222007636	PS00358 Ribosomal protein L5 signature
192222007637	KOW motif; Region: KOW; cl00354
192222007638	HMMPfam hit to PF00467, KOW motif, score 9.3e-11
192222007639	PS01108 Ribosomal protein L24 signature
192222007640	Ribosomal protein L14p/L23e; Region: Ribosomal_L14; cl00328
192222007641	HMMPfam hit to PF00238, Ribosomal protein L14p/L23e, score 3.4e-77
192222007642	PS00049 Ribosomal protein L14 signature
192222007643	Ribosomal protein S17; Region: Ribosomal_S17; cl00351
192222007644	HMMPfam hit to PF00366, Ribosomal protein S17,score 1.1e-23
192222007645	PS00056 Ribosomal protein S17 signature
192222007646	Ribosomal L29 protein/HIP.  L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals.  L29 is located on the surface of the large ribosomal subunit, where it...; Region: Ribosomal_L29_HIP; cd00427
192222007647	putative translocon interaction site; other site
192222007648	23S rRNA interface [nucleotide binding]; other site
192222007649	signal recognition particle (SRP54) interaction site; other site
192222007650	L23 interface [polypeptide binding]; other site
192222007651	trigger factor interaction site; other site
192222007652	HMMPfam hit to PF00831, Ribosomal L29 protein,score 1.5e-19
192222007653	PS00579 Ribosomal protein L29 signature
192222007654	Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with...; Region: Ribosomal_L16_L10e; cd01433
192222007655	23S rRNA interface [nucleotide binding]; other site
192222007656	5S rRNA interface [nucleotide binding]; other site
192222007657	putative antibiotic binding site [chemical binding]; other site
192222007658	L25 interface [polypeptide binding]; other site
192222007659	L27 interface [polypeptide binding]; other site
192222007660	HMMPfam hit to PF00252, Ribosomal protein L16,score 2.7e-82
192222007661	PS00701 Ribosomal protein L16 signature 2
192222007662	30S ribosomal protein S3; Reviewed; Region: rpsC; PRK00310
192222007663	K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3  is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel.  The KH...; Region: 30S_S3_KH; cd02412
192222007664	G-X-X-G motif; other site
192222007665	Ribosomal protein S3, C-terminal domain; Region: Ribosomal_S3_C; pfam00189
192222007666	HMMPfam hit to PF00189, Ribosomal protein S3,C-terminal domai, score 2.8e-49
192222007667	PS00548 Ribosomal protein S3 signature
192222007668	HMMPfam hit to PF07650, KH domain, score 1.4e-17
192222007669	HMMPfam hit to PF00417, Ribosomal protein S3,N-terminal domai, score 1.9e-24
192222007670	Ribosomal protein L22/L17e.  L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit.  It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper...; Region: Ribosomal_L22; cd00336
192222007671	putative translocon binding site; other site
192222007672	protein-rRNA interface [nucleotide binding]; other site
192222007673	HMMPfam hit to PF00237, Ribosomal protein L22p/L17e, score 3.7e-29
192222007674	PS00464 Ribosomal protein L22 signature
192222007675	Ribosomal protein S19; Region: Ribosomal_S19; cl00350
192222007676	HMMPfam hit to PF00203, Ribosomal protein S19,score 1.7e-43
192222007677	PS00323 Ribosomal protein S19 signature
192222007678	50S ribosomal protein L2; Validated; Region: rplB; PRK09374
192222007679	Ribosomal Proteins L2, RNA binding domain; Region: Ribosomal_L2; pfam00181
192222007680	Ribosomal Proteins L2, C-terminal domain; Region: Ribosomal_L2_C; pfam03947
192222007681	HMMPfam hit to PF03947, Ribosomal Proteins L2,C-terminal doma, score 1.7e-85
192222007682	PS00467 Ribosomal protein L2 signature
192222007683	HMMPfam hit to PF00181, Ribosomal Proteins L2, RNA binding dom, score 4.1e-40
192222007684	Ribosomal protein L23; Region: Ribosomal_L23; cl00326
192222007685	HMMPfam hit to PF00276, Ribosomal protein L23,score 2.7e-09
192222007686	Ribosomal protein L4/L1 family; Region: Ribosomal_L4; cl00325
192222007687	HMMPfam hit to PF00573, Ribosomal protein L4/L1 family, score 1.6e-49
192222007688	Ribosomal protein L3; Region: Ribosomal_L3; cl00324
192222007689	HMMPfam hit to PF00297, Ribosomal protein L3, score 2.3e-18
192222007690	Ribosomal protein S10p/S20e; Region: Ribosomal_S10; cl00314
192222007691	HMMPfam hit to PF00338, Ribosomal protein S10p/S20e, score 9.1e-49
192222007692	PS00361 Ribosomal protein S10 signature
192222007693	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]; Region: RsuA; COG1187
192222007694	S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site;  Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized...; Region: S4; cl09940
192222007695	PseudoU_synth:  Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families.  This group consists of...; Region: PseudoU_synth; cl00130
192222007696	active site
192222007697	HMMPfam hit to PF00849, RNA pseudouridylate synthase, score 2.2e-07
192222007698	PS01149 Rsu family of pseudouridine synthase signature
192222007699	HMMPfam hit to PF01479, S4 domain, score 3.6e-09
192222007700	PS00881 Protein splicing signature
192222007701	mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]; Region: COG0595
192222007702	Metallo-beta-lactamase superfamily; Region: Lactamase_B; cl00446
192222007703	RNA-metabolising metallo-beta-lactamase; Region: RMMBL; pfam07521
192222007704	HMMPfam hit to PF07521, RNA-metabolising metallo-beta-lactamase, score 4.4e-11
192222007705	PS01292 Uncharacterized protein family UPF0036 signature
192222007706	HMMPfam hit to PF00753, Metallo-beta-lactamase superfamily, score 1.8e-26
192222007707	Rossmann-fold NAD(P)(+)-binding proteins; Region: NADB_Rossmann; cl09931
192222007708	HMMPfam hit to PF00398, Ribosomal RNA adenine dimethylase, score 1.4e-42
192222007709	PS00322 Histone H3 signature 1
192222007710	Phosphorylase superfamily; Region: PNP_UDP_1; cl00303
192222007711	ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK14462
192222007712	Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster; Region: Radical_SAM; cd01335
192222007713	FeS/SAM binding site; other site
192222007714	HMMPfam hit to PF04055, Radical SAM superfamily,score 1.9e-13
192222007715	1 probable transmembrane helix predicted for Cj1714 by TMHMM2.0 at aa 6-28
192222007716	Acetyltransferases [General function prediction only]; Region: RimI; COG0456
192222007717	N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate; Region: NAT_SF; cd04301
192222007718	Coenzyme A binding pocket [chemical binding]; other site
192222007719	HMMPfam hit to PF00583, Acetyltransferase (GNAT) family, score 1.7e-13
192222007720	Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate...; Region: IPMI_Swivel; cd01577
192222007721	substrate binding site [chemical binding]; other site
192222007722	HMMPfam hit to PF00694, Aconitase C-terminal domain, score 7.2e-54
192222007723	3-isopropylmalate dehydratase large subunit; Reviewed; Region: PRK00402
192222007724	3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; Region: IPMI; cd01583
192222007725	substrate binding site [chemical binding]; other site
192222007726	ligand binding site [chemical binding]; other site
192222007727	HMMPfam hit to PF00330, Aconitase family (aconitate hydratase), score 3.1e-218
192222007728	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007729	PS01244 Aconitase family signature 2
192222007730	PS00450 Aconitase family signature 1
192222007731	tartrate dehydrogenase; Provisional; Region: PRK08194
192222007732	Isocitrate/isopropylmalate dehydrogenase; Region: Iso_dh; cl00445
192222007733	HMMPfam hit to PF00180, Isocitrate/isopropylmalate dehydrogenase, score 2.3e-191
192222007734	PS00470 Isocitrate and isopropylmalate dehydrogenases signature
192222007735	2-isopropylmalate synthase; Validated; Region: PRK00915
192222007736	2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain; Region: DRE_TIM_IPMS; cd07940
192222007737	active site
192222007738	catalytic residues [active]
192222007739	metal binding site [ion binding]; metal-binding site
192222007740	LeuA allosteric (dimerisation) domain; Region: LeuA_dimer; cl07212
192222007741	HMMPfam hit to PF00682, HMGL-like, score 3.1e-133
192222007742	PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2
192222007743	PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1
192222007744	Outer membrane protein beta-barrel domain; Region: OMP_b-brl; cl01155
192222007745	Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1),  6-pyrovoyl...; Region: TFold; cl00263
192222007746	HMMPfam hit to PF01227, GTP cyclohydrolase I, score 1.1e-55
192222007747	Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]; Region: TrxB; COG0492
192222007748	1 probable transmembrane helix predicted for Cj1725 by TMHMM2.0 at aa 5-24
192222007749	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007750	homoserine O-succinyltransferase; Region: metA; TIGR01001
192222007751	Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS); Region: GATase1_HTS; cd03131
192222007752	proposed active site lysine [active]
192222007753	conserved cys residue [active]
192222007754	HMMPfam hit to PF04204, Homoserine O-succinyltransferase, score 6.7e-185
192222007755	OAH/OAS sulfhydrylase; Region: OAH_OAS_sulfhy; TIGR01326
192222007756	CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of...; Region: CGS_like; cd00614
192222007757	homodimer interface [polypeptide binding]; other site
192222007758	substrate-cofactor binding pocket; other site
192222007759	pyridoxal 5'-phosphate binding site [chemical binding]; other site
192222007760	catalytic residue [active]
192222007761	HMMPfam hit to PF01053, Cys/Met metabolism PLP-dependent enzy, score 1.3e-159
192222007762	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007763	PS00013 Prokaryotic membrane lipoprotein lipid attachment site
192222007764	1 probable transmembrane helix predicted for Cj1728c by TMHMM2.0 at aa 20-42
192222007765	flagellar hook protein FlgE; Validated; Region: flgE; PRK08425
192222007766	Flagella basal body rod protein; Region: Flg_bb_rod; cl15793
192222007767	Flagellar basal body protein FlaE; Region: FlaE; pfam07559
192222007768	Flagellar basal body rod FlgEFG protein C-terminal; Region: Flg_bbr_C; cl15855
192222007769	HMMPfam hit to PF06429, Domain of unknown function (DUF1078), score 2e-20
192222007770	PS00017 ATP/GTP-binding site motif A (P-loop)
192222007771	HMMPfam hit to PF07559, Flagellar basal body protein FlaE, score 5.2e-32
192222007772	HMMPfam hit to PF07196, Flagellin hook IN motif,score 9.5e-08
192222007773	HMMPfam hit to PF00460, Flagella basal body rod protein, score 8.2e-12
192222007774	Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination.  HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes...; Region: RuvC_resolvase; cd00529
192222007775	active site
192222007776	putative DNA-binding cleft [nucleotide binding]; other site
192222007777	dimer interface [polypeptide binding]; other site
192222007778	HMMPfam hit to PF02075, Crossover junction endodeoxyribonuclease Ruv, score 7.9e-66