-- dump date   	20140619_020821
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004046699.1	KEGG: act:ACLA_065780 sugar transporter, putative; SPTR: Sugar transporter, putative
YP_004046700.1	InterPro IPR002917; KEGG: dap:Dacet_0622 GTP-binding protein HSR1-related protein; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein HSR1-related protein; PFAM: Dynamin family
YP_004046701.1	KEGG: dap:Dacet_0621 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dynamin family
YP_004046702.1	KEGG: dap:Dacet_0620 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Dynamin family
YP_004046704.1	COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: aar:Acear_1998 transposase IS200-family protein; PFAM: transposase IS200-family protein; SPTR: Transposase IS200-family protein; PFAM: Transposase IS200 like
YP_004046705.1	COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: cyc:PCC7424_2948 transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004046706.1	KEGG: fps:FP2181 hypothetical protein; SPTR: Putative uncharacterized protein
YP_004046707.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase
YP_004046708.1	InterPro IPR006626; KEGG: cbr:CBG18961 C. briggsae CBR-DRE-1 protein; SPTR: Heat shock protein 70
YP_004046709.1	COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593: IPR003959; KEGG: alv:Alvin_1450 AAA ATPase central domain protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: ATPase, AAA family; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004046710.1	KEGG: pfa:PF13_0047 conserved Plasmodium protein, unknown function; SPTR: Putative uncharacterized protein
YP_004046711.1	KEGG: msi:Msm_0335 glutamyl-tRNA(Gln) amidotransferase subunit E; SPTR: Methyl-accepting chemotaxis protein
YP_004046712.1	InterPro IPR018631; KEGG: ddf:DEFDS_1269 hypothetical protein; PFAM: AAA-ATPase-like; SPTR: Putative uncharacterized protein; PFAM: Predicted AAA-ATPase
YP_004046713.1	KEGG: ddf:DEFDS_P065 hypothetical protein; SPTR: Putative uncharacterized protein
YP_004046714.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: ddf:DEFDS_P066 site-specific recombinase, phage integrase family; PFAM: integrase family protein; SPTR: Site-specific recombinase, phage integrase family; PFAM: Phage integrase family
YP_004046715.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: dap:Dacet_1071 ATPase; SPTR: ATPase
YP_004046716.1	COGs: COG0790 FOG: TPR repeat SEL1 subfamily; InterPro IPR006597; KEGG: wsu:WS0385 hypothetical protein; PFAM: Sel1 domain protein repeat-containing protein; SPTR: Sel1 repeat-containing domain protein; PFAM: Sel1 repeat
YP_004046717.1	InterPro IPR004437: IPR003115; KEGG: ddf:DEFDS_P213 hypothetical protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: Putative uncharacterized protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_004046718.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: ddf:DEFDS_P212 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004046719.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterPro IPR003593: IPR020591: IPR013317; KEGG: ddf:DEFDS_P211 hypothetical protein; PFAM: Chromosomal replication initiator DnaA; SMART: AAA ATPase; SPTR: Chromosomal replication initiator protein dnaA; PFAM: Bacterial dnaA protein
YP_004046720.1	COGs: COG1943 Transposase and inactivated derivatives; InterPro IPR002686; KEGG: cob:COB47_2235 transposase IS200-family protein; PFAM: transposase IS200-family protein; SPTR: Transposase IS200-family protein; PFAM: Transposase IS200 like
YP_004046721.1	COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095: IPR001959; KEGG: sul:SYO3AOP1_1391 transposase, IS605 OrfB family; PFAM: transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; SPTR: Transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; PFAM: Helix-turn-helix domain; Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region
YP_004046723.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: nth:Nther_2336 transposase mutator type; PFAM: transposase mutator type; SPTR: Transposase mutator type; PFAM: Transposase, Mutator family
YP_004046725.1	KEGG: xla:380019 ADP-ribosylation factor GTPase activating protein 3; SPTR: Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0
YP_004046726.1	COGs: COG0863 DNA modification methylase; InterPro IPR001091: IPR017985: IPR018312: IPR002941; KEGG: cyc:PCC7424_4192 DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: DNA methylase N-4/N-6 domain protein; PFAM: DNA methylase
YP_004046727.1	InterPro IPR003615: IPR002711; KEGG: ele:Elen_0844 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease domain protein; PFAM: HNH endonuclease
YP_004046728.1	InterPro IPR001173; KEGG: ant:Arnit_2325 family 2 glycosyl transferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004046729.1	KEGG: pyo:PY01987 CCAAT-box DNA binding protein subunit B; SPTR: CCAAT-box DNA binding protein subunit B, putative
YP_004046731.1	KEGG: ecp:ECP_3803 hypothetical protein; SPTR: Putative uncharacterized protein
YP_004046732.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase
YP_004046733.1	InterPro IPR018631: IPR012547; KEGG: saf:SULAZ_0529 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: AAA-ATPase-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: Protein of unknown function (DUF1703); Predicted AAA-ATPase
YP_004046734.1	InterPro IPR000412: IPR013526: IPR013525; KEGG: ddf:DEFDS_2063 ABC transporter permease; PFAM: ABC-2 type transporter; SPTR: ABC transporter, permease; PFAM: ABC-2 type transporter
YP_004046735.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_2062 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004046736.1	COGs: COG1797 Cobyrinic acid a c-diamide synthase; InterPro IPR004484: IPR017929: IPR011698; KEGG: ddf:DEFDS_2061 cobyrinic acid a,c-diamide synthase; PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase
YP_004046737.1	COGs: COG4822 Cobalamin biosynthesis protein CbiK Co2+ chelatase; InterPro IPR010388: IPR019758; KEGG: ddf:DEFDS_2060 sirohydrochlorin cobaltochelatase; PFAM: anaerobic cobalt chelatase; PRIAM: Sirohydrochlorin cobaltochelatase; SPTR: Sirohydrochlorin cobaltochelatase; PFAM: Cobalt chelatase (CbiK)
YP_004046738.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ddf:DEFDS_2059 iron ABC transporter permease; PFAM: transport system permease protein; SPTR: Iron ABC transporter, permease; PFAM: FecCD transport family
YP_004046739.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_2058 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004046740.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_2057 iron ABC transporter substrate-binding protein; PFAM: periplasmic binding protein; SPTR: Iron ABC transporter, substrate-binding protein; PFAM: Periplasmic binding protein
YP_004046741.1	COGs: COG0007 Uroporphyrinogen-III methylase; InterPro IPR006366: IPR003043: IPR000878; KEGG: ddf:DEFDS_2056 uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase
YP_004046742.1	COGs: COG2243 Precorrin-2 methylase; InterPro IPR006364: IPR012382: IPR000878; KEGG: ddf:DEFDS_2055 precorrin-2 C(20)-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Precorrin-2 C(20)-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase
YP_004046743.1	COGs: COG2082 Precorrin isomerase; InterPro IPR003722; KEGG: ddf:DEFDS_2054 precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase CbiC/CobH; PRIAM: Precorrin-8X methylmutase; SPTR: Precorrin-8X methylmutase; PFAM: Precorrin-8X methylmutase
YP_004046744.1	COGs: COG2099 Precorrin-6x reductase; InterPro IPR003723; KEGG: ddf:DEFDS_2053 precorrin-6A reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; SPTR: Precorrin-6A reductase; TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase
YP_004046745.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004838: IPR004839; KEGG: ddf:DEFDS_2048 L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; SPTR: L-threonine-O-3-phosphate decarboxylase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_004046746.1	COGs: COG1492 Cobyric acid synthase; InterPro IPR004459: IPR017929: IPR011698; KEGG: ddf:DEFDS_2047 adenosylcobyric acid synthase (glutamine-hydrolyzing); PFAM: CobB/CobQ domain protein glutamine amidotransferase; SPTR: Cobyric acid synthase; TIGRFAM: cobyric acid synthase CobQ; manually curated; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ
YP_004046747.1	COGs: COG1270 Cobalamin biosynthesis protein CobD/CbiB; InterPro IPR004485; KEGG: ddf:DEFDS_2046 adenosylcobinamide-phosphate synthase; PFAM: cobalamin biosynthesis protein CbiB; SPTR: Adenosylcobinamide-phosphate synthase; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD
YP_004046748.1	COGs: COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain); InterPro IPR006367; KEGG: ddf:DEFDS_2045 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: siroheme synthase; TIGRFAM: siroheme synthase, N-terminal domain
YP_004046749.1	COGs: COG1903 Cobalamin biosynthesis protein CbiD; InterPro IPR002748; KEGG: ddf:DEFDS_2044 cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; SPTR: Putative cobalt-precorrin-6A synthase [deacetylating]; TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD
YP_004046750.1	COGs: COG2241 Precorrin-6B methylase 1; InterPro IPR012818: IPR000878; KEGG: ddf:DEFDS_2043 precorrin-6Y C(5,15)-methyltransferase (decarboxylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Precorrin-6Y C(5,15)-methyltransferase (Decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
YP_004046751.1	COGs: COG2875 Precorrin-4 methylase; InterPro IPR006362: IPR003043: IPR000878; KEGG: ddf:DEFDS_2042 precorrin-4 C(11)-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C(11)-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase
YP_004046752.1	COGs: COG2073 Cobalamin biosynthesis protein CbiG; InterPro IPR002750; KEGG: ddf:DEFDS_2041 cobalamin biosynthesis protein CbiG; PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; SPTR: Cobalamin biosynthesis protein CbiG; PFAM: Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal
YP_004046753.1	COGs: COG1010 Precorrin-3B methylase; InterPro IPR006363: IPR000878; KEGG: ddf:DEFDS_2040 precorrin-3B C(17)-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PRIAM: Precorrin-3B C(17)-methyltransferase; SPTR: Precorrin-3B C(17)-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase
YP_004050081.1	COGs: COG1171 Threonine dehydratase; InterPro IPR000634: IPR005789: IPR001926: IPR002912; KEGG: ddf:DEFDS_2182 threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; SPTR: Threonine dehydratase; TIGRFAM: threonine dehydratase; manually curated; PFAM: ACT domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase, medium form
YP_004050082.1	COGs: COG0593 ATPase involved in DNA replication initiation; InterPro IPR020591: IPR018312: IPR001957: IPR013317: IPR 013159: IPR003593; KEGG: ddf:DEFDS_2181 chromosome replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; SPTR: Chromosomal replication initiator protein dnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_004050083.1	COGs: COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); InterPro IPR001001; KEGG: dap:Dacet_2869 DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; PRIAM: DNA-directed DNA polymerase; SMART: DNA polymerase III beta chain; SPTR: DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_004050084.1	COGs: COG1195 Recombinational DNA repair ATPase (RecF pathway); InterPro IPR018078: IPR003395; KEGG: ddf:DEFDS_0002 hypothetical protein; PFAM: SMC domain protein; SPTR: uncharacterized protein
YP_004050085.1	COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR001241: IPR000565: IPR018522: IPR000408: IPR 011557: IPR003594: IPR013506: IPR006171: IPR002288; KEGG: dap:Dacet_2871 DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain-containing protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; SPTR: DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_004050086.1	COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743: IPR002205: IPR006691; KEGG: ddf:DEFDS_0004 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA gyrase/topoisomerase IV subunit A; SPTR: DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A; TIGRFAM: DNA gyrase, A subunit
YP_004050087.1	COGs: COG0190 5 10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; InterPro IPR000672: IPR020867: IPR020630: IPR020631; KEGG: dap:Dacet_2873 methylenetetrahydrofolate dehydrogenase (NADP(+)); PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; PRIAM: Methylenetetrahydrofolate dehydrogenase (NADP(+)); SPTR: Bifunctional protein folD; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004050088.1	COGs: COG0486 GTPase; InterPro IPR004520: IPR005225: IPR018948: IPR002917; KEGG: dap:Dacet_2874 tRNA modification GTPase TrmE; PFAM: GTP-binding protein HSR1-related; GTP-binding protein TrmE-like; SPTR: tRNA modification GTPase mnmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE
YP_004050089.1	COGs: COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; InterPro IPR020595: IPR004416: IPR002218; KEGG: ddf:DEFDS_0007 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; SPTR: tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG; TIGRFAM: glucose inhibited division protein A; PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_004050090.1	COGs: COG0357 S-adenosylmethionine-dependent methyltransferase involved in cell division; InterPro IPR003682; KEGG: ddf:DEFDS_0008 glucose inhibited division protein B; PFAM: glucose inhibited division protein; SPTR: Ribosomal RNA small subunit methyltransferase G; TIGRFAM: methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA methyltransferase GidB
YP_004050091.1	KEGG: apo:Arcpr_0792 MCM family protein; SPTR: MCM family protein
YP_004050092.1	COGs: COG4892 heme/steroid binding protein; InterPro IPR001199; KEGG: ddf:DEFDS_0851 hypothetical protein; PFAM: cytochrome b5; SPTR: uncharacterized protein; PFAM: Cytochrome b5-like Heme/Steroid binding domain
YP_004050093.1	InterPro IPR003251; KEGG: ddf:DEFDS_0850 hypothetical protein; PFAM: Rubrerythrin; SPTR: uncharacterized protein; PFAM: Rubrerythrin
YP_004050094.1	InterPro IPR000767: IPR002078: IPR013247; KEGG: ddf:DEFDS_1249 hypothetical protein; PFAM: SH3 type 3 domain protein; SPTR: uncharacterized protein; PFAM: Archaeal ATPase; Bacterial SH3 domain
YP_004050095.1	COGs: COG0566 rRNA methylase; InterPro IPR004441: IPR013123: IPR001537; KEGG: ddf:DEFDS_2175 RNA methyltransferase TrmH family; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: RNA methyltransferase, TrmH family; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 3
YP_004050096.1	KEGG: cgr:CAGL0J01774g hypothetical protein; SPTR: uncharacterized protein
YP_004050097.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR000792: IPR014284: IPR013249; KEGG: dal:Dalk_3692 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004050098.1	InterPro IPR004193; KEGG: dat:HRM2_02180 hypothetical 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb); PFAM: glycoside hydrolase family 13 domain protein; SPTR: Hypothetical 5-AMP-activated protein kinase, beta-1 subunit (AMPK beta-1 chain) (AMPKb); PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
YP_004050099.1	KEGG: dap:Dacet_0979 glycoside hydrolase family 13 domain protein; SPTR: Glycoside hydrolase family 13 domain protein
YP_004050100.1	KEGG: dal:Dalk_3689 hypothetical protein; SPTR: uncharacterized protein
YP_004050101.1	COGs: COG1840 ABC-type Fe3+ transport system periplasmic component; InterPro IPR015077; KEGG: glo:Glov_1035 hypothetical protein; PFAM: Domain of unknown function DUF1858; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1858)
YP_004050102.1	COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR012202: IPR003495; KEGG: dap:Dacet_2026 cobalamin synthesis protein P47K; PFAM: cobalamin synthesis protein P47K; SPTR: Cobalamin synthesis protein, P47K; PFAM: CobW/HypB/UreG, nucleotide-binding domain
YP_004050103.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: glo:Glov_1037 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004050104.1	KEGG: ddf:DEFDS_1680 hypothetical protein; SPTR: uncharacterized protein
YP_004050105.1	InterPro IPR020483; KEGG: ddf:DEFDS_1681 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nitrous oxide-stimulated promoter
YP_004050106.1	COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR019844: IPR012156: IPR011129; KEGG: ddf:DEFDS_1433 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004050107.1	COGs: COG1278 Cold shock protein; InterPro IPR002059: IPR019844: IPR012156: IPR011129; KEGG: ddf:DEFDS_1433 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain
YP_004050108.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004050109.1	KEGG: ddf:DEFDS_1432 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2905)
YP_004050110.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590; KEGG: dap:Dacet_1625 aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: Aldehyde Dehydrogenase; PFAM: Aldehyde dehydrogenase family
YP_004050111.1	COGs: COG2768 Uncharacterized Fe-S center protein; InterPro IPR017900: IPR017896; KEGG: ddf:DEFDS_0264 4Fe-4S ferredoxin; SPTR: 4Fe-4S ferredoxin; PFAM: Domain of unknown function (DUF362)
YP_004050112.1	COGs: COG0455 ATPase involved in chromosome partitioning; InterPro IPR009875; KEGG: ddf:DEFDS_0211 hypothetical protein; PFAM: type IV pilus assembly PilZ; SPTR: uncharacterized protein; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; PilZ domain
YP_004050113.1	KEGG: dap:Dacet_2960 hypothetical protein; SPTR: uncharacterized protein
YP_004050114.1	COGs: COG2855 membrane protein; InterPro IPR004684: IPR018383; KEGG: ddf:DEFDS_1435 hypothetical protein; PFAM: Uncharacterised protein family UPF0324; SPTR: uncharacterized protein; manually curated; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein
YP_004050115.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: dap:Dacet_2046 NmrA family protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NmrA family protein; PFAM: Protein of unknown function (DUF2867); 3-beta hydroxysteroid dehydrogenase/isomerase family
YP_004050116.1	COGs: COG0415 Deoxyribodipyrimidine photolyase; InterPro IPR005101; KEGG: mmh:Mmah_0410 deoxyribodipyrimidine photo-lyase type II; PFAM: DNA photolyase FAD-binding; PRIAM: Deoxyribodipyrimidine photo-lyase; SPTR: Deoxyribodipyrimidine photo-lyase; PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: photolyase PhrII
YP_004050117.1	COGs: COG5621 secreted hydrolase; KEGG: ddf:DEFDS_1878 hypothetical protein; SPTR: uncharacterized protein; PFAM: Hydroxyneurosporene synthase (CrtC)
YP_004050118.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: ddf:DEFDS_1877 ABC transporter ATP-binding subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding subunit; PFAM: ABC transporter
YP_004050119.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ddf:DEFDS_1876 ABC transporter permease; PFAM: protein of unknown function DUF214; SPTR: ABC transporter, permease; PFAM: Predicted permease
YP_004050120.1	COGs: COG1896 hydrolase of HD superfamily; KEGG: nth:Nther_2075 hydrolase (HAD superfamily); SPTR: Hydrolase (HAD superfamily)
YP_004050121.1	KEGG: ddf:DEFDS_1344 hypothetical protein; SPTR: uncharacterized protein
YP_004050122.1	COGs: COG0237 Dephospho-CoA kinase; InterPro IPR001977; KEGG: ddf:DEFDS_0315 dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; PRIAM: Dephospho-CoA kinase; SPTR: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_004050123.1	InterPro IPR005358; KEGG: ddf:DEFDS_0314 hypothetical protein; PFAM: protein of unknown function UPF0153; SPTR: uncharacterized protein; manually curated
YP_004050124.1	COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: ddf:DEFDS_0313 fumarylacetoacetate hydrolase family protein; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: Ureidoglycolate lyase; SPTR: Fumarylacetoacetate hydrolase family protein; PFAM: Domain of unknown function (DUF2437); Fumarylacetoacetate (FAA) hydrolase family
YP_004050125.1	COGs: COG1559 periplasmic solute-binding protein; InterPro IPR003770; KEGG: ddf:DEFDS_1020 aminodeoxychorismate lyase; PFAM: aminodeoxychorismate lyase; SPTR: Aminodeoxychorismate lyase; PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_004050126.1	COGs: COG0505 Carbamoylphosphate synthase small subunit; InterPro IPR001317: IPR011702: IPR006220: IPR017926: IPR 006274: IPR002474: IPR000991; KEGG: ddf:DEFDS_1021 carbamoylphosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; SPTR: Carbamoylphosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_004050127.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: nis:NIS_0705 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein
YP_004050128.1	InterPro IPR002781; KEGG: ddf:DEFDS_0184 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004050129.1	COGs: COG0777 acetyl-CoA carboxylase beta subunit; InterPro IPR000438: IPR011762: IPR000022; KEGG: ddf:DEFDS_0579 acetyl-CoA carboxylase carboxyl transferase subunit beta; PFAM: carboxyl transferase; SPTR: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_004050130.1	COGs: COG0285 Folylpolyglutamate synthase; InterPro IPR018109: IPR001645: IPR013221; KEGG: dap:Dacet_1860 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; SPTR: FolC bifunctional protein; TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_004050131.1	COGs: COG1452 Organic solvent tolerance protein OstA; InterPro IPR005653: IPR007543; KEGG: ddf:DEFDS_0577 organic solvent tolerance protein; PFAM: OstA family protein; Organic solvent tolerance protein; SPTR: Organic solvent tolerance protein; PFAM: OstA-like protein
YP_004050132.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: ddf:DEFDS_0576 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004050133.1	KEGG: ddf:DEFDS_0575 hypothetical protein; SPTR: uncharacterized protein
YP_004050134.1	COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: dap:Dacet_1863 phosphoesterase RecJ domain protein; PFAM: phosphoesterase RecJ domain protein; SPTR: Phosphoesterase RecJ domain protein; PFAM: DHH family
YP_004050135.1	COGs: COG1773 Rubredoxin; InterPro IPR001052: IPR018527: IPR004039; KEGG: dde:Dde_3194 rubredoxin; PFAM: Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubredoxin; PFAM: Rubredoxin
YP_004050136.1	COGs: COG0426 flavoprotein; InterPro IPR008254: IPR016440; KEGG: ddf:DEFDS_0572 rubredoxin-oxygen oxidoreductase; PFAM: flavodoxin/nitric oxide synthase; SPTR: Rubredoxin-oxygen oxidoreductase; PFAM: Metallo-beta-lactamase superfamily; Flavodoxin
YP_004050137.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610: IPR001667: IPR003156; KEGG: csc:Csac_0860 single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_004050138.1	COGs: COG2431 membrane protein; InterPro IPR005642; KEGG: ddf:DEFDS_1289 hypothetical protein; PFAM: protein of unknown function DUF340 membrane; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function (DUF340)
YP_004050139.1	KEGG: ddf:DEFDS_1290 hypothetical protein; SPTR: uncharacterized protein
YP_004050140.1	COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362: IPR020557: IPR004769: IPR019468; KEGG: ddf:DEFDS_1224 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase-like; fumarate lyase; SPTR: Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase
YP_004050141.1	COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component; InterPro IPR017909: IPR006311: IPR019546: IPR018389; KEGG: ddf:DEFDS_0139 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: C4-dicarboxylate transporter, substrate-binding protein; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Bacterial extracellular solute-binding protein, family 7; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004050142.1	COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; InterPro IPR004681: IPR010656; KEGG: dap:Dacet_2051 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_004050143.1	COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: ddf:DEFDS_2070 C4-dicarboxylate transporter small subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: C4-dicarboxylate transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_004050144.1	COGs: COG1227 Inorganic pyrophosphatase/exopolyphosphatase; InterPro IPR000644: IPR004097; KEGG: dap:Dacet_2031 inorganic diphosphatase; PFAM: CBS domain containing protein; DHHA2 domain protein; PRIAM: Inorganic diphosphatase; SPTR: Inorganic diphosphatase; PFAM: DRTGG domain; DHH family; CBS domain; DHHA2 domain
YP_004050145.1	InterPro IPR002645; KEGG: tmt:Tmath_1165 anti-sigma-factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004050146.1	COGs: COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase); InterPro IPR003594; KEGG: noc:Noc_2977 anti-sigma regulatory factor (Ser/Thr protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004050147.1	InterPro IPR017937: IPR017936: IPR000866; KEGG: ddf:DEFDS_1997 hypothetical protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: uncharacterized protein; PFAM: Redoxin
YP_004050148.1	InterPro IPR010035: IPR003749; KEGG: ddf:DEFDS_1998 thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; SPTR: Thiamine biosynthesis protein ThiS; TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS
YP_004050149.1	COGs: COG0476 Dinucleotide-utilizing protein involved in molybdopterin and thiamine biosynthesis family 2; InterPro IPR012729: IPR000594; KEGG: ddf:DEFDS_1999 thiamine biosynthesis protein ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; SPTR: Thiamine biosynthesis protein ThiF; TIGRFAM: thiamine biosynthesis protein ThiF; PFAM: ThiF family; TIGRFAM: thiamine biosynthesis protein ThiF, family 2
YP_004050150.1	COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: ddf:DEFDS_1995 peptidase M48 family; PFAM: peptidase M48 Ste24p; SPTR: Peptidase, M48 family; PFAM: Peptidase family M48
YP_004050151.1	COGs: COG1852 conserved hypothetical protein; InterPro IPR002829; KEGG: gsu:GSU0131 hypothetical protein; PFAM: protein of unknown function DUF116; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF116
YP_004050152.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR005794: IPR002376: IPR005793; KEGG: dap:Dacet_2748 methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; SPTR: Methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_004050153.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004838: IPR004839; KEGG: ddf:DEFDS_1993 aminotransferase I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, I and II; PFAM: Aminotransferase class I and II
YP_004050154.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158: IPR007197: IPR006638; KEGG: lil:LA_3994 Fe-S oxidoreductase-like protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase-like protein; PFAM: Radical SAM superfamily; B12 binding domain
YP_004050155.1	COGs: COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); InterPro IPR002942; KEGG: dap:Dacet_0255 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: RNA-binding S4 domain protein; PFAM: S4 domain
YP_004050156.1	InterPro IPR000297: IPR015391; KEGG: ddf:DEFDS_0231 peptidyl-prolyl cis-trans isomerase SurA; PFAM: SurA domain; PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase SurA; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_004050157.1	InterPro IPR000297; KEGG: ddf:DEFDS_0230 hypothetical protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: uncharacterized protein; PFAM: PPIC-type PPIASE domain
YP_004050158.1	COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR006054: IPR013520: IPR006055; KEGG: ddf:DEFDS_0125 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: uncharacterized protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004050159.1	COGs: COG0797 Lipoprotein; InterPro IPR012997: IPR005132: IPR007730; KEGG: ddf:DEFDS_2081 rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain-containing protein; SPTR: Rare lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A
YP_004050160.1	COGs: COG2603 ATPase; InterPro IPR001763: IPR017582; KEGG: ddf:DEFDS_2080 rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese domain protein; TIGRFAM: tRNA 2-selenouridine synthase; PFAM: Rhodanese-like domain; TIGRFAM: tRNA 2-selenouridine synthase
YP_004050161.1	COGs: COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; InterPro IPR003837; KEGG: ddf:DEFDS_1950 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C; PFAM: Glu-tRNAGln amidotransferase C subunit; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
YP_004050162.1	COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR020556: IPR004412: IPR000120; KEGG: ddf:DEFDS_1951 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A; PFAM: Amidase; PRIAM: Amidase; SPTR: Glutamyl-tRNA(Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit
YP_004050163.1	KEGG: ddf:DEFDS_1952 hypothetical protein; SPTR: uncharacterized protein
YP_004050164.1	KEGG: dap:Dacet_2124 type I phosphodiesterase/nucleotide pyrophosphatase; SPTR: Type I phosphodiesterase/nucleotide pyrophosphatase; PFAM: Metalloenzyme superfamily; Type I phosphodiesterase / nucleotide pyrophosphatase
YP_004050165.1	InterPro IPR001845; KEGG: dap:Dacet_0740 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family
YP_004050166.1	COGs: COG0077 Prephenate dehydratase; InterPro IPR018528: IPR002701: IPR001086: IPR008242: IPR 010957: IPR020822: IPR002912; KEGG: ddf:DEFDS_2102 bifunctional chorismate mutase/prephenate dehydratase; PFAM: prephenate dehydratase; Chorismate mutase, type II; amino acid-binding ACT domain protein; SPTR: Bifunctional chorismate mutase/prephenate dehydratase; TIGRFAM: chorismate mutase; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of gram positive AroA protein; chorismate mutase domain of proteobacterial P-protein, clade 2
YP_004050167.1	COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR001917: IPR005861: IPR004839; KEGG: ddf:DEFDS_2101 histidinol-phosphate transaminase; PFAM: aminotransferase class I and II; SPTR: Histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_004050168.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006268: IPR006218; KEGG: ddf:DEFDS_2100 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; SPTR: 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004050169.1	COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099; KEGG: ddf:DEFDS_2099 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase
YP_004050170.1	COGs: COG0128 5-enolpyruvylshikimate-3-phosphate synthase; InterPro IPR001986: IPR016228: IPR006264; KEGG: ddf:DEFDS_2098 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); PRIAM: 3-phosphoshikimate 1-carboxyvinyltransferase; SPTR: 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_004050171.1	COGs: COG0283 Cytidylate kinase; InterPro IPR018313: IPR003136: IPR011994; KEGG: ddf:DEFDS_2097 cytidylate kinase; PFAM: cytidylate kinase region; SPTR: Cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_004050172.1	COGs: COG0761 Penicillin tolerance protein; InterPro IPR003451; KEGG: ddf:DEFDS_2096 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; PRIAM: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; SPTR: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_004050173.1	COGs: COG0539 Ribosomal protein S1; InterPro IPR000110: IPR003029; KEGG: ddf:DEFDS_2095 30S ribosomal protein S1; PFAM: RNA binding S1 domain protein; SPTR: 30S ribosomal protein S1; PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_004050174.1	COGs: COG1740 Ni Fe-hydrogenase I small subunit; InterPro IPR001821: IPR017909: IPR006311: IPR006137; KEGG: ddf:DEFDS_0077 Ni-Fe hydrogenase small subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: Hydrogenase (acceptor); SPTR: Ni-Fe hydrogenase, small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; hydrogenase (NiFe) small subunit (hydA)
YP_004050175.1	COGs: COG0374 Ni Fe-hydrogenase I large subunit; InterPro IPR018194: IPR001501; KEGG: ddf:DEFDS_0076 Ni-Fe hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: Ni-Fe hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase
YP_004050176.1	COGs: COG1969 Ni Fe-hydrogenase I cytochrome b subunit; InterPro IPR000516; KEGG: ddf:DEFDS_0075 Ni-Fe hydrogenase cytochrome b subunit; SPTR: Ni-Fe hydrogenase, cytochrome b subunit; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit
YP_004050177.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004090: IPR004089: IPR003660; KEGG: dap:Dacet_0889 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: Methyl-accepting chemotaxis sensory transducer; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050178.1	COGs: COG0468 RecA/RadA recombinase; InterPro IPR001553: IPR020584: IPR020588: IPR020587: IPR 013765: IPR003593; KEGG: ddf:DEFDS_0038 DNA recombination protein RecA; PFAM: RecA domain protein; SMART: AAA ATPase; SPTR: Protein recA; TIGRFAM: recA protein; PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_004050179.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321; KEGG: ddf:DEFDS_0037 twitching motility protein PilT; PFAM: type II secretion system protein E; SPTR: Twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_004050180.1	COGs: COG2137 conserved hypothetical protein; InterPro IPR003783; KEGG: dap:Dacet_2774 regulatory protein RecX; PFAM: regulatory protein RecX; SPTR: Regulatory protein RecX; PFAM: RecX family
YP_004050181.1	COGs: COG0359 Ribosomal protein L9; InterPro IPR020594: IPR020070: IPR020069; KEGG: ddf:DEFDS_0035 50S ribosomal protein L9; PFAM: Ribosomal protein L9-like; SPTR: 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_004050182.1	COGs: COG0305 Replicative DNA helicase; InterPro IPR007694: IPR007692: IPR007693; KEGG: ddf:DEFDS_0034 replicative DNA helicase DnaB; PFAM: DnaB domain protein helicase domain protein; SPTR: Replicative DNA helicase DnaB; TIGRFAM: replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase
YP_004050183.1	COGs: COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; InterPro IPR004463; KEGG: ddf:DEFDS_0033 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; SPTR: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_004050184.1	InterPro IPR009410: IPR011642; KEGG: ddf:DEFDS_2158 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: uncharacterized protein
YP_004050185.1	InterPro IPR011642; KEGG: ddf:DEFDS_2159 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: uncharacterized protein; PFAM: Nucleoside recognition
YP_004050186.1	COGs: COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; InterPro IPR004399: IPR013749; KEGG: nde:NIDE1195 phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; SPTR: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_004050187.1	COGs: COG0587 DNA polymerase III alpha subunit; InterPro IPR004805: IPR004013: IPR011708: IPR004365: IPR 003141; KEGG: ddf:DEFDS_2002 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_004050188.1	COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: ddf:DEFDS_2001 molybdopterin-guanine dinucleotide biosynthesis protein B; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB
YP_004050189.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: swo:Swol_0155 hypothetical protein; PFAM: transposase mutator type; SPTR: uncharacterized protein; PFAM: Transposase, Mutator family
YP_004050190.1	COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: ddf:DEFDS_0172 cytochrome c-type biogenesis protein; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Cytochrome c-type biogenesis protein; PFAM: Cytochrome C biogenesis protein transmembrane region
YP_004050192.1	InterPro IPR001173; KEGG: dap:Dacet_1396 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004050193.1	COGs: COG0398 conserved hypothetical protein; InterPro IPR015414; KEGG: dap:Dacet_1397 SNARE associated Golgi protein-related protein; PFAM: SNARE associated Golgi protein; SPTR: SNARE associated Golgi protein-related protein; PFAM: SNARE associated Golgi protein
YP_004050194.1	COGs: COG3222 conserved hypothetical protein; InterPro IPR018641; KEGG: fbc:FB2170_08399 hypothetical protein; PFAM: Protein of unknown function DUF2064; SPTR: uncharacterized protein; manually curated; PFAM: Uncharacterized protein conserved in bacteria (DUF2064)
YP_004050195.1	COGs: COG0502 Biotin synthase; KEGG: dap:Dacet_1024 radical SAM domain protein; SPTR: Radical SAM domain protein
YP_004050196.1	InterPro IPR010181; KEGG: dap:Dacet_1415 C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; SPTR: C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein
YP_004050197.1	InterPro IPR001763; KEGG: dat:HRM2_39110 ThiF; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: ThiF; PFAM: Rhodanese-like domain
YP_004050198.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: tye:THEYE_A0898 transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_004050199.1	COGs: COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; InterPro IPR017871: IPR003439: IPR003593; KEGG: tle:Tlet_1353 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related; PFAM: ABC transporter
YP_004050200.1	COGs: COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system permease component; InterPro IPR000515; KEGG: clj:CLJU_c08790 nitrate/sulfonate/bicarbonate ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Predicted ABC nitrate/sulfonate/bicarbonate family transporter, permease component; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004050201.1	COGs: COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components; KEGG: str:Sterm_2281 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein; SPTR: ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
YP_004050202.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: ppd:Ppro_3385 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Polysaccharide biosynthesis protein CapD; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Polysaccharide biosynthesis protein
YP_004050203.1	COGs: COG1287 membrane protein required for N-linked glycosylation; InterPro IPR003674; KEGG: ddf:DEFDS_0397 hypothetical protein; PFAM: Oligosaccharyl transferase STT3 subunit; SPTR: uncharacterized protein; PFAM: Oligosaccharyl transferase STT3 subunit
YP_004050204.1	InterPro IPR003674; KEGG: ddf:DEFDS_0397 hypothetical protein; PFAM: Oligosaccharyl transferase STT3 subunit; SPTR: uncharacterized protein
YP_004050205.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362; KEGG: saf:SULAZ_0356 sugar transferase; PFAM: sugar transferase; SPTR: Sugar transferase; PFAM: Bacterial sugar transferase
YP_004050206.1	COGs: COG0812 UDP-N-acetylmuramate dehydrogenase; InterPro IPR016166: IPR003170: IPR006094: IPR011601; KEGG: dap:Dacet_0478 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain-containing protein; FAD linked oxidase domain protein; PRIAM: UDP-N-acetylmuramate dehydrogenase; SPTR: UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_004050207.1	COGs: COG0005 Purine nucleoside phosphorylase; InterPro IPR000845; KEGG: ddf:DEFDS_0474 S-methyl-5-thioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1; SPTR: S-methyl-5-thioadenosine phosphorylase; PFAM: Phosphorylase superfamily
YP_004050208.1	COGs: COG2860 membrane protein; InterPro IPR005115; KEGG: ddf:DEFDS_0473 hypothetical protein; PFAM: Uncharacterised protein family UPF0126; SPTR: uncharacterized protein; PFAM: UPF0126 domain
YP_004050209.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR017871: IPR010916: IPR003439: IPR015854: IPR 003593; KEGG: dap:Dacet_0476 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter
YP_004050210.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: ddf:DEFDS_0471 lipoprotein-releasing system permease protein; PFAM: protein of unknown function DUF214; SPTR: Lipoprotein-releasing system permease protein; PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family
YP_004050211.1	COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterPro IPR011702: IPR006220: IPR001317: IPR017926: IPR 004739: IPR001674: IPR000991; KEGG: ddf:DEFDS_0470 GMP synthase glutamine-hydrolyzing; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; SPTR: GMP synthase, glutamine-hydrolyzing; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase C terminal domain; Glutamine amidotransferase class-I; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_004050212.1	COGs: COG0516 IMP dehydrogenase/GMP reductase; InterPro IPR015875: IPR000644: IPR018529: IPR005990: IPR 001093; KEGG: ddf:DEFDS_0469 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; PRIAM: IMP dehydrogenase; SMART: CBS domain containing protein; SPTR: Inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_004050213.1	COGs: COG0171 NAD synthase; InterPro IPR003694; KEGG: ddf:DEFDS_0468 NAD(+) synthase; SPTR: NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; TIGRFAM: NAD+ synthetase
YP_004050214.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ddf:DEFDS_0467 hydrolase carbon-nitrogen family; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Hydrolase, carbon-nitrogen family; PFAM: Carbon-nitrogen hydrolase
YP_004050215.1	COGs: COG0315 Molybdenum cofactor biosynthesis enzyme; InterPro IPR002820; KEGG: ddf:DEFDS_0466 molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis protein MoaC; SPTR: Molybdenum cofactor biosynthesis protein C; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: MoaC family; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC
YP_004050216.1	COGs: COG0012 GTPase probable translation factor; InterPro IPR006073: IPR004396: IPR002917: IPR013029; KEGG: ddf:DEFDS_0464 GTP-binding protein; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; SPTR: GTP-binding protein; TIGRFAM: GTP-binding protein YchF; PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_004050217.1	KEGG: mbr:MONBRDRAFT_6677 hypothetical protein; SPTR: Predicted protein
YP_004050218.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR005467: IPR003660: IPR003661: IPR 003594; KEGG: tye:THEYE_A0751 sensor histidine kinase, putative; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Sensor histidine kinase, putative; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050219.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR005829: IPR001789: IPR001867; KEGG: tye:THEYE_A0752 DNA-binding response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: DNA-binding response regulator; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004050220.1	InterPro IPR005075; KEGG: tye:THEYE_A0756 peptidase propeptide and ypeb domain protein; PFAM: Propeptide PepSY amd peptidase M4; SPTR: Peptidase propeptide and ypeb domain protein; PFAM: Peptidase propeptide and YPEB domain
YP_004050221.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR010916; KEGG: cob:COB47_0800 transcriptional regulator; SPTR: transcriptional regulator
YP_004050222.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004050223.1	COGs: COG0326 Molecular chaperone HSP90 family; InterPro IPR020575: IPR019805: IPR001404: IPR003594: IPR 020576; KEGG: dap:Dacet_0900 heat shock protein HSP90; PFAM: Heat shock protein Hsp90-like; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Chaperone protein htpG; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_004050224.1	InterPro IPR011935; KEGG: pae:PA1494 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein
YP_004050225.1	COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR000983: IPR001120: IPR012902; KEGG: ddf:DEFDS_1270 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050226.1	KEGG: tye:THEYE_A0414 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2723)
YP_004050227.1	KEGG: tye:THEYE_A0413 hypothetical protein; SPTR: uncharacterized protein
YP_004050228.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: tye:THEYE_A0412 ADP-heptose:LPS heptosyltransferase II, putative; PFAM: glycosyl transferase family 9; SPTR: ADP-heptose:LPS heptosyltransferase II, putative; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_004050229.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: saf:SULAZ_1001 dolichol-phosphate mannosyltransferase (dolichol-phosphate mannose synthase) (dolichyl-phosphate beta-D-mannosyltransferase) (mannose-P-dolichol synthase) (MPD synthase) (DPMsynthase); PFAM: glycosyl transferase family 2; PRIAM: Dolichyl-phosphate beta-D-mannosyltransferase; SPTR: Dolichol-phosphate mannosyltransferase (Dolichol-phosphate mannose synthase) (Dolichyl-phosphate beta-D-mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPMsynthase); PFAM: Glycosyl transferase family 2
YP_004050231.1	InterPro IPR002797; KEGG: tye:THEYE_A0578 hypothetical protein; PFAM: polysaccharide biosynthesis protein; SPTR: uncharacterized protein; PFAM: Polysaccharide biosynthesis protein
YP_004050232.1	COGs: COG0438 Glycosyltransferase; InterPro IPR018120: IPR001296; KEGG: saf:SULAZ_0998 glycosyl transferase, group 1 family; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family; PFAM: Glycosyl transferases group 1
YP_004050233.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: saf:SULAZ_0999 glycosyl transferase, family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2; PFAM: Glycosyl transferase family 2
YP_004050234.1	KEGG: saf:SULAZ_1000 methyltransferase domain family protein; SPTR: Methyltransferase domain family protein
YP_004050235.1	KEGG: pfh:PFHG_02879 conserved hypothetical protein; SPTR: uncharacterized protein
YP_004050236.1	COGs: COG3419 Tfp pilus assembly protein tip-associated adhesin PilY1; InterPro IPR018247: IPR002035; KEGG: pmx:PERMA_1154 hypothetical protein; PFAM: von Willebrand factor type A; SPTR: uncharacterized protein; PFAM: von Willebrand factor type A domain
YP_004050237.1	InterPro IPR001120: IPR012902; KEGG: ddf:DEFDS_0861 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050238.1	KEGG: ddf:DEFDS_0860 hypothetical protein; SPTR: uncharacterized protein
YP_004050239.1	InterPro IPR001120: IPR012902; KEGG: ddf:DEFDS_0859 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050240.1	KEGG: ddf:DEFDS_0858 hypothetical protein; SPTR: uncharacterized protein
YP_004050241.1	InterPro IPR001120: IPR012902; KEGG: dps:DP1468 fimbrial biogenesis protein FimU; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050242.1	COGs: COG1087 UDP-glucose 4-epimerase; InterPro IPR005886: IPR001509; KEGG: saf:SULAZ_0910 UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase
YP_004050243.1	COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR017871: IPR003439: IPR017940: IPR011917: IPR 001140: IPR003593; KEGG: ddf:DEFDS_0328 ABC transporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter; ABC transporter transmembrane region; TIGRFAM: lipid A export permease/ATP-binding protein MsbA
YP_004050244.1	COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR000795: IPR005225: IPR006298: IPR004161: IPR 000640; KEGG: dvm:DvMF_0822 GTP-binding protein TypA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_004050245.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR005467: IPR001789: IPR000700: IPR 000014: IPR001638: IPR013656: IPR003661: IPR003594: IPR001610; KEGG: dba:Dbac_2309 PAS/PAC sensor hybrid histidine kinase; PFAM: extracellular solute-binding protein family 3; PAS fold-4 domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver; SMART: extracellular solute-binding protein family 3; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box
YP_004050246.1	InterPro IPR017932; KEGG: ddf:DEFDS_2138 hypothetical protein; SPTR: uncharacterized protein; PFAM: Glutamine amidotransferases class-II
YP_004050247.1	COGs: COG0069 Glutamate synthase domain 2; InterPro IPR017900: IPR017896: IPR002932; KEGG: ddf:DEFDS_2137 ferredoxin-dependent glutamate synthase subunit alpha; PFAM: ferredoxin-dependent glutamate synthase; SPTR: Ferredoxin-dependent glutamate synthase, alpha subunit; PFAM: Conserved region in glutamate synthase
YP_004050248.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027: IPR017900: IPR017896: IPR002489; KEGG: ddf:DEFDS_2136 ferredoxin-dependent glutamate synthase subunit beta; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase alpha subunit domain protein; SPTR: Ferredoxin-dependent glutamate synthase, beta subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif
YP_004050249.1	COGs: COG0004 Ammonia permease; InterPro IPR018047: IPR001905; KEGG: ddf:DEFDS_0082 ammonium transporter Amt family; PFAM: ammonium transporter; SPTR: Ammonium transporter, Amt family; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter; TC 1.A.11
YP_004050250.1	InterPro IPR001845; KEGG: ddf:DEFDS_1673 AsrR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, AsrR family; PFAM: Bacterial regulatory protein, arsR family
YP_004050251.1	COGs: COG0701 permease; InterPro IPR001991: IPR005524; KEGG: dap:Dacet_2259 permease; PFAM: permease; SPTR: Permease; PFAM: Predicted permease
YP_004050252.1	COGs: COG1230 Co/Zn/Cd efflux system component; InterPro IPR002524; KEGG: tko:TK2009 cobalt/zinc/cadmium cation efflux pump protein; PFAM: cation efflux protein; SPTR: Cobalt/zinc/cadmium cation efflux pump protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004050253.1	InterPro IPR005243; KEGG: ddf:DEFDS_1671 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2; TIGRFAM: small redox-active disulfide protein 2
YP_004050255.1	COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: ddf:DEFDS_1452 arsenate reductase (glutaredoxin); PFAM: Protein-tyrosine phosphatase, low molecular weight; PRIAM: Protein-tyrosine-phosphatase; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: Arsenate reductase (Glutaredoxin); PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin)
YP_004050256.1	COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706: IPR002657; KEGG: nde:NIDE3708 arsenite resistance protein ArsB; PFAM: Bile acid:sodium symporter; SPTR: Arsenite resistance protein ArsB; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein
YP_004050257.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: dap:Dacet_0517 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Auxin Efflux Carrier; PFAM: Membrane transport protein
YP_004050258.1	COGs: COG0113 Delta-aminolevulinic acid dehydratase; InterPro IPR001731; KEGG: ddf:DEFDS_0812 porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; PRIAM: Porphobilinogen synthase; SPTR: Delta-aminolevulinic acid dehydratase; PFAM: Delta-aminolevulinic acid dehydratase
YP_004050259.1	COGs: COG2607 ATPase (AAA+ superfamily); InterPro IPR008533; KEGG: ddf:DEFDS_0813 hypothetical protein; PFAM: protein of unknown function DUF815; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF815)
YP_004050260.1	COGs: COG3434 signal transduction protein containing EAL and modified HD-GYP domains; InterPro IPR001633: IPR014408: IPR013976; KEGG: ddf:DEFDS_0835 signal transduction response regulator; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein; SPTR: Signal transduction response regulator; PFAM: EAL domain; HDOD domain
YP_004050261.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006655: IPR017909: IPR006311: IPR006963: IPR 006656: IPR006657; KEGG: ddf:DEFDS_1699 molybdopterin oxidoreductase molybdopterin-binding subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; SPTR: Molybdopterin oxidoreductase, molybdopterin-binding subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_004050262.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR017900: IPR017896; KEGG: ddf:DEFDS_1692 molybdopterin oxidoreductase 4Fe-4S ferredoxin; SPTR: Molybdopterin oxidoreductase, 4Fe-4S ferredoxin; PFAM: 4Fe-4S binding domain
YP_004050263.1	COGs: COG5557 Polysulphide reductase; InterPro IPR005614; KEGG: ddf:DEFDS_1691 molybdopterin oxidoreductase membrane subunit; PFAM: Polysulphide reductase NrfD; SPTR: Molybdopterin oxidoreductase, membrane subunit; PFAM: Polysulphide reductase, NrfD
YP_004050264.1	COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645: IPR003658; KEGG: ddf:DEFDS_0079 anti-sigma factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004050265.1	COGs: COG0815 Apolipoprotein N-acyltransferase; InterPro IPR003010: IPR004563; KEGG: ddf:DEFDS_0986 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase
YP_004050266.1	KEGG: ddf:DEFDS_0580 hypothetical protein; SPTR: uncharacterized protein
YP_004050267.1	InterPro IPR000297; KEGG: ddf:DEFDS_1056 peptidyl-prolyl cis-trans isomerse D; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerse D; PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_004050268.1	COGs: COG2984 ABC-type uncharacterized transport system periplasmic component; InterPro IPR007487; KEGG: ddf:DEFDS_0187 ABC transporter substrate-binding protein; PFAM: protein of unknown function DUF534; SPTR: ABC transporter, substrate-binding protein; PFAM: ABC transporter substrate binding protein
YP_004050269.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR016160: IPR005467: IPR001789: IPR 000014: IPR013656: IPR003594; KEGG: ppd:Ppro_3008 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; response regulator receiver; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004050270.1	InterPro IPR000868; KEGG: ddf:DEFDS_0678 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family
YP_004050271.1	COGs: COG3091 conserved hypothetical protein; InterPro IPR006640; KEGG: asu:Asuc_0837 hypothetical protein; SMART: protein of unknown function SprT; SPTR: Protein sprT; PFAM: SprT-like family
YP_004050272.1	KEGG: dap:Dacet_2885 hypothetical protein; SPTR: uncharacterized protein
YP_004050273.1	COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: drt:Dret_0095 phosphonate ABC transporter, periplasmic phosphonate-binding protein; SPTR: Phosphonates-binding protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein
YP_004050274.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: ddf:DEFDS_P121 transposase; PFAM: transposase mutator type; SPTR: Transposase; PFAM: Transposase, Mutator family
YP_004050275.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR006162: IPR005467: IPR001789: IPR 003661: IPR003594; KEGG: ssm:Spirs_1419 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain
YP_004050276.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198; KEGG: hch:HCH_00126 short-chain alcohol dehydrogenase-like protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain alcohol dehydrogenase-like protein; PFAM: short chain dehydrogenase
YP_004050277.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR020476: IPR020084: IPR003710: IPR013332: IPR 013752: IPR000086; KEGG: ddf:DEFDS_2126 hypothetical protein; PFAM: Ketopantoate reductase ApbA/PanE domain protein; NUDIX hydrolase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; NUDIX domain; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_004050278.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR001270: IPR018368: IPR004176: IPR003959: IPR 013093: IPR019489: IPR003593; KEGG: ddf:DEFDS_2127 ATP-dependent Clp protease ATP-binding subunit ClpC; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent Clp protease, ATP-binding subunit ClpC; PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)
YP_004050279.1	COGs: COG2206 HD-GYP domain; InterPro IPR006674: IPR003607; KEGG: ddf:DEFDS_2128 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004050280.1	COGs: COG2716 Glycine cleavage system regulatory protein; InterPro IPR002912; KEGG: ddf:DEFDS_2129 glycine cleavage system transcriptional repressor; PFAM: amino acid-binding ACT domain protein; SPTR: Glycine cleavage system transcriptional repressor; PFAM: ACT domain
YP_004050281.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: ddf:DEFDS_2130 polypeptide deformylase; PFAM: formylmethionine deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_004050282.1	COGs: COG1052 Lactate dehydrogenase and related dehydrogenase; InterPro IPR006139: IPR006140; KEGG: ddf:DEFDS_2131 D-isomer specific 2-hydroxyacid dehydrogenase catalytic component; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; SPTR: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_004050283.1	KEGG: maq:Maqu_3164 preprotein translocase subunit SecB; SPTR: Protein-export protein secB; PFAM: Preprotein translocase subunit SecB
YP_004050284.1	COGs: COG0616 Periplasmic serine protease (ClpP class); InterPro IPR004635: IPR002142; KEGG: ddf:DEFDS_2093 signal peptide peptidase SppA; PFAM: peptidase S49; SPTR: Signal peptide peptidase SppA; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type
YP_004050285.1	COGs: COG2703 Hemerythrin; InterPro IPR016131: IPR012827: IPR012312; KEGG: tte:TTE0259 hemerythrin; SPTR: Hemerythrin; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; TIGRFAM: hemerythrin-like metal-binding domain
YP_004050286.1	COGs: COG0591 Na+/proline symporter; InterPro IPR001734; KEGG: ddf:DEFDS_1547 solute:sodium symporter; PFAM: Na+/solute symporter; SPTR: Solute:sodium symporter; PFAM: Sodium:solute symporter family
YP_004050287.1	COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: ddf:DEFDS_1548 appr-1-p processing domain protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: Appr-1-p processing domain protein; PFAM: Macro domain
YP_004050288.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ddf:DEFDS_1549 carbon-nitrogen hydrolase family protein; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Carbon-nitrogen hydrolase family protein; PFAM: Carbon-nitrogen hydrolase
YP_004050289.1	COGs: COG0427 acetyl-CoA hydrolase; InterPro IPR003702; KEGG: dap:Dacet_1280 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase; PRIAM: acetyl-CoA hydrolase; SPTR: acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase N-terminal domain
YP_004050290.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: dap:Dacet_0517 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Auxin Efflux Carrier; PFAM: Membrane transport protein
YP_004050291.1	COGs: COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); InterPro IPR003751; KEGG: dap:Dacet_2469 carbon storage regulator, CsrA; PFAM: carbon storage regulator; SPTR: Carbon storage regulator homolog; TIGRFAM: carbon storage regulator; PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA)
YP_004050292.1	COGs: COG1699 conserved hypothetical protein; InterPro IPR003775; KEGG: ddf:DEFDS_2143 flagellar assembly protein FliW; PFAM: protein of unknown function DUF180; SPTR: Flagellar assembly factor fliW; PFAM: FliW protein
YP_004050293.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR016160; KEGG: ddf:DEFDS_2144 hypothetical protein; SPTR: uncharacterized protein; PFAM: Bacterial flagellin N-terminal helical region
YP_004050294.1	COGs: COG1256 Flagellar hook-associated protein; InterPro IPR002371: IPR001444: IPR010930; KEGG: ddf:DEFDS_2145 flagellar hook-associated protein 1 FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar hook-associated protein 1 FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK
YP_004050295.1	InterPro IPR007809; KEGG: ddf:DEFDS_2146 hypothetical protein; PFAM: FlgN family protein; SPTR: uncharacterized protein; PFAM: FlgN protein
YP_004050296.1	InterPro IPR007412; KEGG: ddf:DEFDS_2147 negative regulator of flagellin synthesis FlgM; PFAM: Anti-sigma-28 factor FlgM family protein; SPTR: Negative regulator of flagellin synthesis FlgM; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM
YP_004050297.1	InterPro IPR019301; KEGG: dap:Dacet_2475 flagellar protein FlgJ-like protein; PFAM: Flagellar protein FlgJ-like; SPTR: Flagellar protein FlgJ-like protein; PFAM: Rod binding protein
YP_004050298.1	COGs: COG1706 Flagellar basal-body P-ring protein; InterPro IPR001782; KEGG: ddf:DEFDS_2149 flagellar P-ring protein FlgI; PFAM: flagellar P-ring protein; SPTR: Flagellar P-ring protein; PFAM: Flagellar P-ring protein
YP_004050299.1	COGs: COG2063 Flagellar basal body L-ring protein; InterPro IPR000527; KEGG: ddf:DEFDS_2150 flagellar L-ring protein FlgH; PFAM: flagellar L-ring protein; SPTR: Flagellar L-ring protein; PFAM: Flagellar L-ring protein
YP_004050300.1	InterPro IPR018631: IPR012547; KEGG: saf:SULAZ_0996 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004050301.1	KEGG: ddf:DEFDS_1651 hypothetical protein; SPTR: uncharacterized protein
YP_004050302.1	COGs: COG0606 ATPase with chaperone activity; InterPro IPR001208: IPR004482: IPR000523: IPR003593; KEGG: ddf:DEFDS_2092 Mg chelatase-related protein; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; SPTR: Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, subunit ChlI; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: Mg chelatase-related protein
YP_004050303.1	COGs: COG0703 Shikimate kinase; InterPro IPR000623; KEGG: ddf:DEFDS_0449 shikimate kinase; PFAM: shikimate kinase; PRIAM: Shikimate kinase; SPTR: Shikimate kinase; PFAM: Shikimate kinase
YP_004050304.1	COGs: COG0337 3-dehydroquinate synthetase; InterPro IPR016303: IPR016037: IPR002658; KEGG: ddf:DEFDS_0450 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; PRIAM: 3-dehydroquinate synthase; SPTR: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_004050305.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: ddf:DEFDS_0451 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein
YP_004050306.1	KEGG: ddf:DEFDS_0452 hypothetical protein; SPTR: uncharacterized protein; PFAM: Roadblock/LC7 domain
YP_004050307.1	COGs: COG0757 3-dehydroquinate dehydratase II; InterPro IPR001874; KEGG: apa:APP7_1952 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; PRIAM: 3-dehydroquinate dehydratase; SPTR: 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_004050308.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001131: IPR000587: IPR000994; KEGG: ddf:DEFDS_0454 X-Pro dipeptidase; PFAM: peptidase M24; creatinase; SPTR: X-Pro dipeptidase; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_004050309.1	COGs: COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); InterPro IPR013852: IPR020599: IPR011768: IPR013185: IPR 001059: IPR015365; KEGG: ddf:DEFDS_0455 translation elongation factor P; PFAM: Elongation factor P; Elongation factor P/YeiP protein; Elongation factor KOW-like domain-containing protein; SPTR: Elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_004050310.1	COGs: COG0511 Biotin carboxyl carrier protein; InterPro IPR001249: IPR000089; KEGG: ddf:DEFDS_0456 acetyl-CoA carboxylase biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_004050311.1	COGs: COG4770 acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR005479: IPR011761: IPR011764: IPR004549: IPR 005481: IPR005482; KEGG: ddf:DEFDS_0457 acetyl-CoA carboxylase biotin carboxylase subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: acetyl-CoA carboxylase, biotin carboxylase subunit; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004050312.1	InterPro IPR020606: IPR019734: IPR013026: IPR001440; KEGG: ddf:DEFDS_0458 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein
YP_004050313.1	KEGG: dap:Dacet_0068 hypothetical protein; SPTR: uncharacterized protein
YP_004050314.1	COGs: COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; InterPro IPR004424: IPR006204: IPR013750; KEGG: ddf:DEFDS_0460 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; PRIAM: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; SPTR: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_004050315.1	COGs: COG0462 Phosphoribosylpyrophosphate synthetase; InterPro IPR000842: IPR005946: IPR000836; KEGG: ddf:DEFDS_0461 ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; PRIAM: Ribose-phosphate diphosphokinase; SPTR: Ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_004050316.1	COGs: COG0193 Peptidyl-tRNA hydrolase; InterPro IPR018171: IPR001328; KEGG: dap:Dacet_0071 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; PRIAM: Aminoacyl-tRNA hydrolase; SPTR: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_004050317.1	COGs: COG3808 Inorganic pyrophosphatase; InterPro IPR004131; KEGG: ddf:DEFDS_0463 V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H pyrophosphatase; PRIAM: Inorganic diphosphatase; SPTR: V-type H(+)-translocating pyrophosphatase; TIGRFAM: V-type H(+)-translocating pyrophosphatase; PFAM: Inorganic H+ pyrophosphatase; TIGRFAM: vacuolar-type H(+)-translocating pyrophosphatase
YP_004050318.1	COGs: COG3174 membrane protein; InterPro IPR003416; KEGG: tgr:Tgr7_2575 hypothetical protein; PFAM: MgtC/SapB transporter; SPTR: uncharacterized protein; PFAM: MgtC family
YP_004050319.1	InterPro IPR000620; KEGG: dap:Dacet_0527 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family
YP_004050320.1	InterPro IPR000620; KEGG: ddf:DEFDS_1813 drug/metabolite transporter; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Drug/metabolite transporter; PFAM: EamA-like transporter family
YP_004050321.1	InterPro IPR017969: IPR000620; KEGG: ddf:DEFDS_1812 drug/metabolite transporter; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Drug/metabolite transporter; PFAM: EamA-like transporter family
YP_004050322.1	COGs: COG0682 Prolipoprotein diacylglyceryltransferase; InterPro IPR001640; KEGG: ddf:DEFDS_1811 prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; SPTR: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_004050323.1	COGs: COG1410 Methionine synthase I cobalamin-binding domain; InterPro IPR003726: IPR000489: IPR004223: IPR006158: IPR 003759: IPR011822; KEGG: ddf:DEFDS_1683 5-methyltetrahydrofolate--homocysteine methyltransferase; PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; Vitamin B12 dependent methionine synthase activation region; SPTR: 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; Homocysteine S-methyltransferase; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase; methylmalonyl-CoA mutase C-terminal domain
YP_004050324.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR020060: IPR001412: IPR004514: IPR020058: IPR 020059; KEGG: dap:Dacet_1019 glutaminyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain; SPTR: Glutaminyl-tRNA synthetase; TIGRFAM: glutaminyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_004050325.1	COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: ddf:DEFDS_0049 hypothetical protein; PFAM: protein of unknown function DUF218; SPTR: uncharacterized protein; PFAM: DUF218 domain
YP_004050326.1	COGs: COG1420 Transcriptional regulator of heat shock gene; InterPro IPR002571: IPR021153; KEGG: dap:Dacet_2890 heat-inducible transcription repressor HrcA; PFAM: Winged helix-turn-helix transcription repressor, HrcA-like; SPTR: Heat-inducible transcription repressor hrcA; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA
YP_004050327.1	COGs: COG0576 Molecular chaperone GrpE (heat shock protein); InterPro IPR000740; KEGG: ddf:DEFDS_2115 molecular chaperone GrpE; PFAM: GrpE protein; SPTR: Protein grpE; PFAM: GrpE
YP_004050328.1	COGs: COG0443 Molecular chaperone; InterPro IPR001023: IPR018181: IPR012725: IPR013126; KEGG: ddf:DEFDS_2114 molecular chaperone DnaK; PFAM: Heat shock protein 70; SPTR: Chaperone protein dnaK; TIGRFAM: chaperone protein DnaK; PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; Fe-S protein assembly chaperone HscA
YP_004050329.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR003095: IPR018253: IPR001623: IPR001305: IPR 012724: IPR002939; KEGG: dap:Dacet_2887 chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_004050330.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR020441: IPR002078: IPR001789: IPR002197: IPR 003593; KEGG: ddf:DEFDS_2111 two-component system, NtrC family, transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component system, NtrC family, transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004050331.1	COGs: COG0165 Argininosuccinate lyase; InterPro IPR003031: IPR000362: IPR020557: IPR009049; KEGG: dap:Dacet_2886 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_004050332.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089: IPR000727; KEGG: ddf:DEFDS_1544 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis protein; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050333.1	InterPro IPR013217; KEGG: ddf:DEFDS_1657 S-adenosylmethionine-dependent methyltransferase; PFAM: Methyltransferase type 12; SPTR: S-adenosylmethionine-dependent methyltransferase; PFAM: Methyltransferase small domain
YP_004050334.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR005467: IPR003660: IPR003661: IPR 003594; KEGG: tye:THEYE_A1801 sensor protein AtoS; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Sensor protein AtoS; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050335.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR020441: IPR002078: IPR001789: IPR002197: IPR 003593; KEGG: gem:GM21_3903 two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004050336.1	KEGG: rfr:Rfer_3349 histone protein; SPTR: Histone protein
YP_004050337.1	COGs: COG2518 Protein-L-isoaspartate carboxylmethyltransferase; InterPro IPR000682; KEGG: ddf:DEFDS_0260 protein-L-isoaspartate (D-aspartate) O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; PRIAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; SPTR: Protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004050338.1	COGs: COG0548 acetylglutamate kinase; InterPro IPR001057: IPR011148: IPR004662: IPR001048; KEGG: dap:Dacet_0443 acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; PRIAM: acetylglutamate kinase; SPTR: acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase
YP_004050339.1	InterPro IPR011701; KEGG: afu:AF0367 oxalate/formate antiporter (OxlT-2); PFAM: major facilitator superfamily MFS_1; SPTR: Oxalate/formate antiporter (OxlT-2); PFAM: Major Facilitator Superfamily
YP_004050340.1	COGs: COG2014 conserved hypothetical protein; KEGG: ddf:DEFDS_1903 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF364)
YP_004050341.1	COGs: COG0140 Phosphoribosyl-ATP pyrophosphohydrolase; InterPro IPR008179: IPR021130; KEGG: ddf:DEFDS_1904 phosphoribosyl-ATP pyrophosphohydrolase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase-like; SPTR: Phosphoribosyl-ATP pyrophosphatase; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_004050342.1	COGs: COG0107 Imidazoleglycerol-phosphate synthase; InterPro IPR004651: IPR006062; KEGG: dap:Dacet_3004 imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; SPTR: Imidazole glycerol phosphate synthase subunit hisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_004050343.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR004358: IPR005467: IPR001789: IPR003661: IPR 003594; KEGG: ddf:DEFDS_0953 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050344.1	COGs: COG5581 glycosyltransferase; InterPro IPR009875; KEGG: ddf:DEFDS_0952 type IV pilus assembly protein PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Type IV pilus assembly protein PilZ; PFAM: PilZ domain
YP_004050345.1	COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR002645: IPR003658; KEGG: ddf:DEFDS_0951 anti-sigma factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004050346.1	COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: ddf:DEFDS_0950 hypothetical protein; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; SPTR: uncharacterized protein; PFAM: CheR methyltransferase, SAM binding domain
YP_004050347.1	COGs: COG0820 Fe-S-cluster redox enzyme; InterPro IPR004383: IPR007197; KEGG: dap:Dacet_1903 radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SPTR: Ribosomal RNA large subunit methyltransferase N; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family
YP_004050348.1	COGs: COG1225 Peroxiredoxin; InterPro IPR017936: IPR000866; KEGG: ddf:DEFDS_0947 bacterioferritin comigratory protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Bacterioferritin comigratory protein; PFAM: AhpC/TSA family
YP_004050349.1	InterPro IPR003761; KEGG: ddf:DEFDS_0946 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; SPTR: Exodeoxyribonuclease 7 small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit
YP_004050350.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: dap:Dacet_1901 polyprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Polyprenyl synthetase; PFAM: Polyprenyl synthetase
YP_004050351.1	COGs: COG1154 Deoxyxylulose-5-phosphate synthase; InterPro IPR005474: IPR020826: IPR005477: IPR005475: IPR 005476; KEGG: ddf:DEFDS_0944 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain-containing protein; SPTR: 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_004050352.1	COGs: COG1189 rRNA methylase; InterPro IPR002942: IPR004538: IPR002877; KEGG: dap:Dacet_1899 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Hemolysin A; TIGRFAM: hemolysin A; PFAM: S4 domain; FtsJ-like methyltransferase; TIGRFAM: hemolysin TlyA family protein
YP_004050353.1	COGs: COG0061 sugar kinase; InterPro IPR002504; KEGG: ddf:DEFDS_0942 NAD(+) kinase; PFAM: ATP-NAD/AcoX kinase; SPTR: Probable inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD kinase
YP_004050354.1	COGs: COG0497 ATPase involved in DNA repair; InterPro IPR004604: IPR003395; KEGG: ddf:DEFDS_1599 DNA repair protein RecN; PFAM: SMC domain protein; SPTR: DNA repair protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_004050355.1	COGs: COG0586 membrane-associated protein; InterPro IPR015414; KEGG: ddf:DEFDS_1598 hypothetical protein; PFAM: SNARE associated Golgi protein; SPTR: uncharacterized protein; PFAM: SNARE associated Golgi protein
YP_004050356.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: ddf:DEFDS_1597 peptidase M23/M37 family; PFAM: Peptidase M23; SPTR: Peptidase, M23/M37 family; PFAM: Peptidase family M23
YP_004050357.1	COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR000802: IPR004680; KEGG: ddf:DEFDS_1180 citrate transporter; PFAM: Citrate transporter; SPTR: Citrate transporter; PFAM: Citrate transporter
YP_004050358.1	InterPro IPR017900: IPR017896; KEGG: ddf:DEFDS_0633 2-oxoacid oxidoreductase subunit delta; SPTR: 2-oxoacid oxidoreductase, delta subunit; PFAM: 4Fe-4S binding domain
YP_004050359.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: ddf:DEFDS_0634 2-oxoacid oxidoreductase subunit alpha; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: 2-oxoacid oxidoreductase, alpha subunit; PFAM: domain; Transketolase, C-terminal domain
YP_004050360.1	COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: ddf:DEFDS_0635 2-oxoacid oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: 2-oxoacid oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_004050361.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: ddf:DEFDS_0636 2-oxoacid oxidoreductase subunit gamma; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoacid oxidoreductase, gamma subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase
YP_004050362.1	COGs: COG1254 Acylphosphatase; InterPro IPR020456: IPR017968: IPR001792; KEGG: ddf:DEFDS_0637 acylphosphatase; PFAM: acylphosphatase; SPTR: Acylphosphatase; PFAM: Acylphosphatase
YP_004050363.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: pin:Ping_3151 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Auxin Efflux Carrier; manually curated; PFAM: Membrane transport protein
YP_004050364.1	COGs: COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase; InterPro IPR006115; KEGG: sta:STHERM_c16040 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; PRIAM: 3-hydroxyisobutyrate dehydrogenase; SPTR: 3-hydroxyisobutyrate dehydrogenase; PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_004050365.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845: IPR000873; KEGG: ddf:DEFDS_0569 acyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; SPTR: Acyl-CoA synthase; PFAM: AMP-binding enzyme
YP_004050366.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: ddf:DEFDS_2074 acetyl-CoA synthetase family protein; PFAM: AMP-dependent synthetase and ligase; SPTR: acetyl-CoA synthetase family protein; PFAM: AMP-binding enzyme
YP_004050367.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004050368.1	COGs: COG1158 Transcription termination factor; InterPro IPR004665: IPR011112: IPR011113: IPR000194: IPR 011129: IPR003593; KEGG: ddf:DEFDS_0096 transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA-binding; Rho termination factor domain protein; SMART: Cold shock protein; AAA ATPase; SPTR: Transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_004050369.1	COGs: COG0254 Ribosomal protein L31; InterPro IPR002150; KEGG: ddf:DEFDS_0097 50S ribosomal protein L31; PFAM: ribosomal protein L31; SPTR: 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_004050370.1	COGs: COG1351 alternative thymidylate synthase; InterPro IPR003669; KEGG: ddf:DEFDS_0098 FAD-dependent thymidylate synthase; PFAM: thymidylate synthase complementing protein ThyX; SPTR: FAD-dependent thymidylate synthase; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: Thymidylate synthase complementing protein; TIGRFAM: thymidylate synthase, flavin-dependent
YP_004050371.1	COGs: COG3872 metal-dependent protein; InterPro IPR010787; KEGG: ddf:DEFDS_0099 hypothetical protein; PFAM: protein of unknown function DUF1385; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1385)
YP_004050372.1	COGs: COG0216 Protein chain release factor A; InterPro IPR000352: IPR004373: IPR005139; KEGG: ddf:DEFDS_0100 peptide chain release factor RF-1; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_004050373.1	COGs: COG2890 Methylase of polypeptide chain release factors; InterPro IPR002052: IPR004556: IPR019874: IPR007848; KEGG: ddf:DEFDS_0101 modification methylase HemK family; PFAM: methyltransferase small; SPTR: Modification methylase, HemK family; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_004050374.1	COGs: COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; InterPro IPR005750: IPR001986; KEGG: ddf:DEFDS_0102 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); SPTR: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_004050375.1	COGs: COG0040 ATP phosphoribosyltransferase; InterPro IPR018198: IPR013820; KEGG: dap:Dacet_2297 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; PRIAM: ATP phosphoribosyltransferase; SPTR: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase
YP_004050376.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR016474: IPR010827: IPR000184; KEGG: ddf:DEFDS_0104 hypothetical protein; PFAM: surface antigen (D15); surface antigen variable number repeat-containing protein; SPTR: uncharacterized protein; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_004050377.1	InterPro IPR005632; KEGG: ddf:DEFDS_0105 outer membrane protein OmpH; PFAM: outer membrane chaperone Skp (OmpH); SPTR: Outer membrane protein OmpH; PFAM: Outer membrane protein (OmpH-like)
YP_004050378.1	COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR018357: IPR007691: IPR001451; KEGG: ddf:DEFDS_0106 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; SPTR: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_004050379.1	COGs: COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; InterPro IPR010084: IPR013114; KEGG: ddf:DEFDS_0107 3R-hydroxymyristoyl ACP dehydrase; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; SPTR: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_004050380.1	COGs: COG1043 Acyl-(acyl carrier protein); InterPro IPR010137: IPR001451; KEGG: ddf:DEFDS_0108 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam O-acyltransferase; PRIAM:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluc osamineO-acyltransferase; SPTR:Acyl-[acyl-carrier-protein]--UDP-N-acetylgluco samO-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylgl ucosamineO-acyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_004050381.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: ddf:DEFDS_0109 oxidoreductase; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold
YP_004050382.1	COGs: COG3494 conserved hypothetical protein; InterPro IPR010415; KEGG: ddf:DEFDS_0110 hypothetical protein; PFAM: protein of unknown function DUF1009; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1009)
YP_004050383.1	COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: ddf:DEFDS_0111 hypothetical protein; PFAM: CheC domain protein; SPTR: uncharacterized protein; PFAM: CheC-like family
YP_004050384.1	COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627: IPR000045: IPR014032; KEGG: ddf:DEFDS_0112 type IV prepilin peptidase; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; PRIAM: Prepilin peptidase; SPTR: Type IV prepilin peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family
YP_004050385.1	COGs: COG0162 Tyrosyl-tRNA synthetase; InterPro IPR002942: IPR001412: IPR002305: IPR002307; KEGG: ddf:DEFDS_0113 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_004050386.1	COGs: COG4198 conserved hypothetical protein; InterPro IPR008323; KEGG: ddf:DEFDS_0114 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033563; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1015)
YP_004050387.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR002942: IPR006224: IPR006145: IPR006225; KEGG: ddf:DEFDS_1986 ribosomal large subunit pseudouridine synthase D; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_004050388.1	COGs: COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); InterPro IPR000440; KEGG: ddf:DEFDS_1985 NADH-quinone oxidoreductase subunit A; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; SPTR: NADH-quinone oxidoreductase subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004050389.1	COGs: COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductase; InterPro IPR006137: IPR006138; KEGG: ddf:DEFDS_1984 NADH-quinone oxidoreductase subunit B; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase subunit B; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_004050390.1	COGs: COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; InterPro IPR020396: IPR001268; KEGG: ddf:DEFDS_1983 NADH-quinone oxidoreductase subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: NADH-quinone oxidoreductase; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_004050391.1	COGs: COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; InterPro IPR014029: IPR001135: IPR010219; KEGG: ddf:DEFDS_1982 NADH-quinone oxidoreductase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, D subunit; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit
YP_004050392.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: ddf:DEFDS_1981 NADH-quinone oxidoreductase subunit E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: NADH-quinone oxidoreductase, E subunit; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_004050393.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR017896: IPR017900: IPR001949: IPR011538: IPR 019554: IPR019575; KEGG: ddf:DEFDS_1980 NADH-quinone oxidoreductase subunit F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH-quinone oxidoreductase, F subunit; PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; 4Fe-4S binding domain; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_004050394.1	COGs: COG3383 Uncharacterized anaerobic dehydrogenase; InterPro IPR001041: IPR017896: IPR017900: IPR000283: IPR 019574: IPR006963: IPR006656: IPR006657; KEGG: ddf:DEFDS_1979 NADH-quinone oxidoreductase subunit G; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; SPTR: NADH-quinone oxidoreductase, G subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain
YP_004050395.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: tet:TTHERM_00319980 TPR Domain containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR Domain containing protein; PFAM: Tetratricopeptide repeat
YP_004050396.1	COGs: COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); InterPro IPR018086: IPR001694; KEGG: ddf:DEFDS_1978 NADH-quinone oxidoreductase subunit H; PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: NADH-quinone oxidoreductase, H subunit; PFAM: NADH dehydrogenase
YP_004050397.1	COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017896: IPR017900: IPR010226; KEGG: ddf:DEFDS_1977 NADH-quinone oxidoreductase subunit I; SPTR: NADH-quinone oxidoreductase subunit I; TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_004050398.1	COGs: COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); InterPro IPR001457; KEGG: ddf:DEFDS_1976 NADH-quinone oxidoreductase subunit J; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; SPTR: NADH-quinone oxidoreductase, J subunit; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_004050399.1	COGs: COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); InterPro IPR001133; KEGG: ddf:DEFDS_1975 NADH-quinone oxidoreductase subunit K; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: NADH-quinone oxidoreductase subunit K; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_004050400.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001516: IPR001750: IPR003916: IPR018393: IPR 003945; KEGG: ddf:DEFDS_1974 NADH-quinone oxidoreductase subunit L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; SPTR: NADH-quinone oxidoreductase, L subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 C-terminus; NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L
YP_004050401.1	COGs: COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); InterPro IPR001750: IPR003918: IPR010227; KEGG: ddf:DEFDS_1973 NADH-quinone oxidoreductase subunit M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH-quinone oxidoreductase, M subunit; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M
YP_004050402.1	COGs: COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); InterPro IPR001750: IPR010096; KEGG: ddf:DEFDS_1972 NADH-quinone oxidoreductase subunit N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH-quinone oxidoreductase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_004050403.1	InterPro IPR003251; KEGG: ddf:DEFDS_1971 rubrerythrin; PFAM: Rubrerythrin; SPTR: Rubrerythrin; PFAM: Rubrerythrin
YP_004050404.1	COGs: COG0016 Phenylalanyl-tRNA synthetase alpha subunit; InterPro IPR006195: IPR004188: IPR002319: IPR004529; KEGG: ddf:DEFDS_1622 phenylalanyl-tRNA synthetase subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; SPTR: Phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_004050405.1	COGs: COG0072 Phenylalanyl-tRNA synthetase beta subunit; InterPro IPR002547: IPR005121: IPR005146: IPR005147: IPR 004532; KEGG: ddf:DEFDS_1621 phenylalanyl-tRNA synthetase subunit beta; PFAM: B3/4 domain protein; t-RNA-binding domain-containing protein; tRNA synthetase B5; ferredoxin-fold anticodon-binding; SPTR: Phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_004050406.1	KEGG: lhk:LHK_01945 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF904)
YP_004050407.1	KEGG: ddf:DEFDS_0478 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cell division protein ZapA
YP_004050408.1	COGs: COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; InterPro IPR002464: IPR003959: IPR003593; KEGG: dap:Dacet_1923 ATPase AAA; PFAM: ATPase AAA; SMART: AAA ATPase; SPTR: ATPase AAA; PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)
YP_004050409.1	COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: ddf:DEFDS_0480 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_004050410.1	COGs: COG1418 HD superfamily hydrolase; InterPro IPR004088: IPR018111: IPR006674: IPR004087: IPR 003607: IPR017705: IPR006675; KEGG: ddf:DEFDS_0481 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein; SPTR: uncharacterized protein; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: KH domain; HD domain; Domain of unknown function (DUF3552); TIGRFAM: conserved hypothetical protein YmdA/YtgF; uncharacterized domain HDIG
YP_004050411.1	COGs: COG1692 conserved hypothetical protein; InterPro IPR004843: IPR005235; KEGG: ddf:DEFDS_0482 hypothetical protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family
YP_004050412.1	COGs: COG0379 Quinolinate synthase; InterPro IPR003473; KEGG: ddf:DEFDS_0483 quinolinate synthase subunit A; PFAM: Quinolinate synthetase A; PRIAM: Quinolinate synthase; SPTR: Quinolinate synthase, subunit A; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit
YP_004050413.1	COGs: COG1832 CoA-binding protein; InterPro IPR003781; KEGG: ddf:DEFDS_1675 hypothetical protein; PFAM: CoA-binding domain protein; SPTR: uncharacterized protein; PFAM: CoA binding domain
YP_004050414.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647: IPR013570; KEGG: ddf:DEFDS_1282 TetR family transcriptional regulator; PFAM: Tetracycline transcriptional regulator YsiA domain-containing protein; regulatory protein TetR; SPTR: Transcriptional regulator, TetR family; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family
YP_004050415.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: gur:Gura_1594 beta-lactamase domain-containing protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_004050416.1	COGs: COG2067 Long-chain fatty acid transport protein; InterPro IPR005017; KEGG: dal:Dalk_0288 aromatic hydrocarbon degradation membrane protein; PFAM: membrane protein involved in aromatic hydrocarbon degradation; SPTR: Membrane protein involved in aromatic hydrocarbon degradation; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_004050417.1	KEGG: ddf:DEFDS_1839 hypothetical protein; SPTR: uncharacterized protein; PFAM: Chalcone-flavanone isomerase
YP_004050418.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR018376: IPR001753; KEGG: ddf:DEFDS_1835 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxybutyryl-CoA dehydratase; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004050419.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089: IPR006092: IPR006091: IPR006090; KEGG: ddf:DEFDS_1834 butyryl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Butyryl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004050420.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017896: IPR017900: IPR004017; KEGG: ddf:DEFDS_1833 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Iron-sulfur cluster-binding protein; PFAM: Cysteine-rich domain; Nitrate reductase gamma subunit
YP_004050421.1	COGs: COG2086 Electron transfer flavoprotein beta subunit; InterPro IPR014730: IPR012255; KEGG: ddf:DEFDS_1832 electron transfer flavoprotein subunit beta; PFAM: Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein, beta subunit; PFAM: Electron transfer flavoprotein domain
YP_004050422.1	COGs: COG2025 Electron transfer flavoprotein alpha subunit; InterPro IPR018206: IPR014730: IPR014731: IPR001308; KEGG: ddf:DEFDS_1831 electron transfer flavoprotein subunit alpha; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SPTR: Electron transfer flavoprotein, alpha subunit; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain
YP_004050423.1	KEGG: ddf:DEFDS_1830 hypothetical protein; SPTR: uncharacterized protein
YP_004050424.1	COGs: COG2070 Dioxygenase related to 2-nitropropane dioxygenase; InterPro IPR004136; KEGG: ddf:DEFDS_1829 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase NPD; SPTR: 2-nitropropane dioxygenase; PFAM: 2-nitropropane dioxygenase
YP_004050425.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR022272: IPR020845: IPR000873; KEGG: ddf:DEFDS_1468 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme
YP_004050426.1	COGs: COG1250 3-hydroxyacyl-CoA dehydrogenase; InterPro IPR017441: IPR006176: IPR006108: IPR001753; KEGG: ddf:DEFDS_1467 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain-containing protein; Enoyl-CoA hydratase/isomerase; SPTR: 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase; PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_004050427.1	COGs: COG0183 acetyl-CoA acetyltransferase; InterPro IPR020615: IPR020610: IPR020613: IPR020616: IPR 020617: IPR002155; KEGG: ddf:DEFDS_1466 3-ketoacyl-CoA thiolase; PFAM: Thiolase-like; SPTR: 3-ketoacyl-CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004050428.1	COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006089: IPR006092: IPR006091: IPR006090; KEGG: ddf:DEFDS_1465 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_004050429.1	COGs: COG0045 Succinyl-CoA synthetase beta subunit; InterPro IPR011761: IPR017866: IPR013650: IPR005811: IPR 005809; KEGG: ddf:DEFDS_0920 succinyl-CoA synthase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; PRIAM: Succinate--CoA ligase (ADP-forming); SPTR: Succinyl-CoA ligase [ADP-forming] subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_004050430.1	COGs: COG0074 Succinyl-CoA synthetase alpha subunit; InterPro IPR017440: IPR005810: IPR003781: IPR005811; KEGG: nis:NIS_0839 succinyl-CoA synthase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding domain protein; SPTR: Succinyl-CoA ligase [ADP-forming] subunit alpha; TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_004050431.1	InterPro IPR009875; KEGG: dap:Dacet_1189 type IV pilus assembly PilZ; PFAM: type IV pilus assembly PilZ; SPTR: Type IV pilus assembly PilZ; PFAM: PilZ domain
YP_004050432.1	COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR019591; KEGG: ddf:DEFDS_1268 ATP-binding protein, CobQ/CobB/MinD/ParA family; PFAM: ATPase-like, ParA/MinD; SPTR: ATP-binding protein, CobQ/CobB/MinD/ParA family; PFAM: ParA/MinD ATPase like; ATPase MipZ
YP_004050433.1	COGs: COG2003 DNA repair protein; InterPro IPR020891: IPR001405; KEGG: ddf:DEFDS_0563 DNA repair protein RadC; PFAM: DNA repair protein RadC; SPTR: DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_004050434.1	COGs: COG0702 nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: ddf:DEFDS_0565 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NmrA-like family
YP_004050435.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160; KEGG: dap:Dacet_1262 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004050436.1	COGs: COG1190 Lysyl-tRNA synthetase (class II); InterPro IPR006195: IPR004365: IPR004364: IPR002313: IPR 018149; KEGG: ddf:DEFDS_1155 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_004050437.1	COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: ddf:DEFDS_1157 phosphodiesterase MJ0936 family; PFAM: metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; TIGRFAM: phosphoesterase, MJ0936 family
YP_004050438.1	COGs: COG1077 Actin-like ATPase involved in cell morphogenesis; InterPro IPR004753; KEGG: ddf:DEFDS_1158 cell shape-determining protein MreB; PFAM: cell shape determining protein MreB/Mrl; SPTR: Cell shape-determining protein MreB; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_004050439.1	COGs: COG1792 Cell shape-determining protein; InterPro IPR007221: IPR005223; KEGG: dap:Dacet_1265 rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; SPTR: Rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC; PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_004050440.1	KEGG: dap:Dacet_1266 hypothetical protein; SPTR: uncharacterized protein
YP_004050441.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460: IPR017790; KEGG: dap:Dacet_1267 penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_004050442.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR018365: IPR001182: IPR011923; KEGG: dap:Dacet_1268 rod shape-determining protein RodA; PFAM: cell cycle protein; SPTR: Rod shape-determining protein RodA; TIGRFAM: rod shape-determining protein RodA; PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_004050443.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR007197: IPR018768: IPR006638; KEGG: ddf:DEFDS_1163 Fe-S oxidoreductases family protein; PFAM: Radical SAM domain protein; Protein of unknown function DUF2344; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductases family protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2344); Radical SAM superfamily
YP_004050444.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: ddf:DEFDS_1164 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: Ferric uptake regulator, Fur family; PFAM: Ferric uptake regulator family
YP_004050445.1	InterPro IPR014127; KEGG: dap:Dacet_1270 hypothetical protein; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: conserved hypothetical protein TIGR02757
YP_004050446.1	COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR017936: IPR017937: IPR013766: IPR006662: IPR 005746; KEGG: ddf:DEFDS_1167 thioredoxin; PFAM: Thioredoxin domain-containing protein; SPTR: Thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_004050447.1	InterPro IPR013429; KEGG: ddf:DEFDS_1168 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family
YP_004050448.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119; KEGG: dap:Dacet_1449 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, beta subunit
YP_004050449.1	COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR020578: IPR000192; KEGG: ddf:DEFDS_2124 serine--glyoxylate transaminase; PFAM: aminotransferase class V; SPTR: Serine--glyoxylate transaminase; PFAM: Aminotransferase class-V
YP_004050450.1	COGs: COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis; InterPro IPR006195: IPR002314: IPR004516; KEGG: ddf:DEFDS_2123 ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II (G H P and S); PRIAM: Histidine--tRNA ligase; SPTR: ATP phosphoribosyltransferase regulatory subunit; PFAM: tRNA synthetase class II core domain (G, H, P, S and T)
YP_004050451.1	COGs: COG0104 Adenylosuccinate synthase; InterPro IPR018220: IPR001114; KEGG: ddf:DEFDS_2122 adenylosuccinate synthase; PFAM: adenylosuccinate synthetase; PRIAM: Adenylosuccinate synthase; SMART: adenylosuccinate synthetase; SPTR: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_004050452.1	COGs: COG0691 tmRNA-binding protein; InterPro IPR000037; KEGG: ddf:DEFDS_1882 SsrA RNA (tmRNA)-binding protein; PFAM: SmpB protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_004050453.1	KEGG: nth:Nther_0089 hypothetical protein; SPTR: uncharacterized protein
YP_004050454.1	KEGG: gfo:GFO_1946 hypothetical protein; SPTR: Hypothetical transmembrane protein
YP_004050455.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR018488: IPR002373; KEGG: ddf:DEFDS_0233 hypothetical protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_004050456.1	COGs: COG0114 Fumarase; InterPro IPR020557: IPR000362: IPR018951: IPR003031; KEGG: ddf:DEFDS_0234 fumarate hydratase class II; PFAM: fumarate lyase; Fumarase C-like; SPTR: Fumarate hydratase, class II; PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II
YP_004050457.1	COGs: COG2049 Allophanate hydrolase subunit 1; InterPro IPR003833: IPR010016; KEGG: tga:TGAM_1183 allophanate hydrolase subunit 1; PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; SPTR: uncharacterized protein; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: conserved hypothetical protein TIGR00370
YP_004050458.1	COGs: COG1984 Allophanate hydrolase subunit 2; InterPro IPR003778; KEGG: toc:Toce_1840 UreA amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; PRIAM: Urea carboxylase; SMART: Allophanate hydrolase subunit 2; SPTR: Urea amidolyase related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotin-dependent carboxylase uncharacterized domain
YP_004050459.1	COGs: COG1540 conserved hypothetical protein; InterPro IPR005501; KEGG: pab:PAB2445 LamB/YcsF family protein; PFAM: LamB/YcsF family protein; SPTR: LamB/YcsF family protein; PFAM: LamB/YcsF family
YP_004050460.1	COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389; KEGG: cti:RALTA_A1446 TRAP transporter, extracytoplasmic binding receptor component (DctP); PFAM: Extracellular solute-binding protein, family 7; SPTR: TRAP transporter, extracytoplasmic binding receptor component (DctP); PFAM: Bacterial extracellular solute-binding protein, family 7
YP_004050461.1	InterPro IPR007387; KEGG: bbr:BB2986 hypothetical protein; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: membrane protein; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_004050462.1	COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656: IPR004681; KEGG: dia:Dtpsy_1375 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_004050463.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR010822: IPR001932; KEGG: tdn:Suden_0208 response regulator receiver domain-containing protein; PFAM: response regulator receiver; Stage II sporulation protein E; SMART: response regulator receiver; protein phosphatase 2C domain protein; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Response regulator receiver domain; Stage II sporulation protein E (SpoIIE)
YP_004050464.1	COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: ddf:DEFDS_1400 TRAP-type transporter substrate-binding protein; SPTR: TRAP-type transport system, substrate-binding protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; TIGRFAM: TRAP transporter solute receptor, TAXI family
YP_004050465.1	COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR010656: IPR011853; KEGG: ddf:DEFDS_1399 TRAP-type transporter permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP-type transport system, permease component; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein
YP_004050466.1	COGs: COG0101 Pseudouridylate synthase; InterPro IPR020097: IPR001406; KEGG: ddf:DEFDS_0990 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; SPTR: tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_004050467.1	KEGG: taf:THA_623 GGDEF domain protein; SPTR: Ggdef domain protein
YP_004050468.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369: IPR006312: IPR003998; KEGG: dap:Dacet_2963 twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Sec-independent protein translocase protein tatA/E homolog; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_004050469.1	InterPro IPR012902; KEGG: ddf:DEFDS_1246 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050470.1	InterPro IPR001120: IPR012902; KEGG: ddf:DEFDS_1247 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050471.1	InterPro IPR012902; KEGG: ddf:DEFDS_1248 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050472.1	KEGG: asa:ASA_3939 MSHA biogenesis protein MshP; SPTR: uncharacterized protein
YP_004050473.1	COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); KEGG: ddf:DEFDS_1249 hypothetical protein; SPTR: uncharacterized protein; PFAM: AAA domain (dynein-related subfamily)
YP_004050474.1	InterPro IPR013026; KEGG: ddf:DEFDS_1250 hypothetical protein; SPTR: uncharacterized protein
YP_004050475.1	KEGG: ddf:DEFDS_1251 hypothetical protein; SPTR: uncharacterized protein
YP_004050476.1	KEGG: ddf:DEFDS_1252 hypothetical protein; SPTR: uncharacterized protein
YP_004050477.1	KEGG: ddf:DEFDS_1253 hypothetical protein; SPTR: uncharacterized protein
YP_004050478.1	KEGG: ddf:DEFDS_1254 hypothetical protein; SPTR: uncharacterized protein
YP_004050479.1	COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR004845: IPR005644: IPR011662: IPR004846: IPR 001775: IPR001814; KEGG: ddf:DEFDS_1255 type IV pilus assembly protein PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; SPTR: Type IV pilus assembly protein PilQ; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ
YP_004050480.1	InterPro IPR013026; KEGG: ddf:DEFDS_2108 hypothetical protein; SPTR: uncharacterized protein
YP_004050481.1	COGs: COG1469 conserved hypothetical protein; InterPro IPR003801; KEGG: ddf:DEFDS_2107 hypothetical protein; PFAM: protein of unknown function DUF198; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase folE2; PFAM: Uncharacterized ACR, COG1469
YP_004050482.1	COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR003593; KEGG: ddf:DEFDS_1256 type IV pilus assembly protein PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: Type IV pilus assembly protein PilB; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E
YP_004050483.1	COGs: COG0215 Cysteinyl-tRNA synthetase; InterPro IPR015803: IPR015273: IPR002308; KEGG: ddf:DEFDS_0838 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; PRIAM: Cysteine--tRNA ligase; SPTR: Cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_004050484.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509: IPR008089; KEGG: ddf:DEFDS_0837 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004050485.1	COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR005835: IPR001451: IPR005882; KEGG: dap:Dacet_2836 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: Bifunctional protein glmU; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_004050486.1	COGs: COG0449 Glucosamine 6-phosphate synthetase contains amidotransferase and phosphosugar isomerase domains; InterPro IPR017932: IPR000583: IPR001347: IPR005855; KEGG: ddf:DEFDS_1947 glucosamine--fructose-6-phosphate aminotransferase; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); SPTR: Glucosamine--fructose-6-phosphate aminotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_004050487.1	InterPro IPR005631; KEGG: ddf:DEFDS_0926 hypothetical protein; PFAM: protein of unknown function DUF339; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF339)
YP_004050488.1	COGs: COG1462 Uncharacterized protein involved in formation of curli polymers; InterPro IPR005534; KEGG: sul:SYO3AOP1_0256 hypothetical protein; PFAM: Curli production assembly/transport component CsgG; SPTR: uncharacterized protein; PFAM: Curli production assembly/transport component CsgG
YP_004050489.1	COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR017936: IPR017937: IPR000866; KEGG: dap:Dacet_2447 redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; SPTR: Redoxin domain protein; PFAM: AhpC/TSA family
YP_004050490.1	InterPro IPR006626: IPR006558; KEGG: ddf:DEFDS_1152 hypothetical protein; SMART: LamG domain protein jellyroll fold domain protein; Parallel beta-helix repeat; SPTR: uncharacterized protein
YP_004050491.1	KEGG: ddf:DEFDS_1242 hypothetical protein; SPTR: uncharacterized protein
YP_004050492.1	KEGG: ddf:DEFDS_1245 hypothetical protein; SPTR: uncharacterized protein; PFAM: Bacterial type II secretion system protein G
YP_004050493.1	COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076: IPR003004; KEGG: ddf:DEFDS_1244 general secretion pathway protein F; PFAM: Type II secretion system F domain; SPTR: General secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain
YP_004050494.1	InterPro IPR001120: IPR012902; KEGG: ddf:DEFDS_1243 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_004050495.1	COGs: COG0021 Transketolase; InterPro IPR005474: IPR005475: IPR005476; KEGG: ddf:DEFDS_0073 hypothetical protein; PFAM: Transketolase domain-containing protein; Transketolase central region; SPTR: uncharacterized protein; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_004050496.1	COGs: COG1929 Glycerate kinase; InterPro IPR004381; KEGG: thx:Thet_1040 glycerate kinase; PFAM: glycerate kinase; PRIAM: Glycerate kinase; SPTR: Glycerate kinase; TIGRFAM: glycerate kinase; PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase
YP_004050497.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310; KEGG: ddf:DEFDS_0189 histidine triad family protein; PFAM: histidine triad (HIT) protein; SPTR: Histidine triad family protein; PFAM: HIT domain
YP_004050498.1	KEGG: ddf:DEFDS_0190 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1049)
YP_004050499.1	KEGG: ddf:DEFDS_0191 hypothetical protein; SPTR: uncharacterized protein
YP_004050500.1	COGs: COG0249 Mismatch repair ATPase (MutS family); InterPro IPR000432: IPR007695: IPR007696: IPR007861: IPR 005748; KEGG: ddf:DEFDS_2173 DNA mismatch repair ATPase MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; SPTR: DNA mismatch repair protein mutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS family domain IV; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_004050501.1	KEGG: ddf:DEFDS_2174 hypothetical protein; SPTR: uncharacterized protein
YP_004050502.1	KEGG: ddf:DEFDS_1221 hypothetical protein; SPTR: uncharacterized protein
YP_004050503.1	KEGG: dap:Dacet_0519 hypothetical protein; SPTR: uncharacterized protein
YP_004050504.1	InterPro IPR010324; KEGG: mct:MCR_0519 type II restriction endonuclease DpnI; PFAM: Dam-replacing family protein; PRIAM: Type II site-specific deoxyribonuclease; SPTR: Dam-replacing family; PFAM: Dam-replacing family
YP_004050505.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004050506.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR000943: IPR009042: IPR007627: IPR007624: IPR 007630: IPR014284; KEGG: ddf:DEFDS_0258 DNA-directed RNA polymerase sigma 70 factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: DNA-directed RNA polymerase sigma 70 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004050507.1	COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: dap:Dacet_0447 peptidase M24; PFAM: peptidase M24; SPTR: Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_004050508.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR014188; KEGG: dap:Dacet_0838 quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; SPTR: Quinone oxidoreductase, YhdH/YhfP family; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: quinone oxidoreductase, YhdH/YhfP family
YP_004050509.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001734: IPR003018: IPR010822: IPR001932; KEGG: ddf:DEFDS_1669 serine phosphatase; PFAM: Stage II sporulation protein E; GAF domain protein; Na+/solute symporter; SMART: protein phosphatase 2C domain protein; GAF domain protein; SPTR: Serine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004050510.1	COGs: COG2206 HD-GYP domain; InterPro IPR005467: IPR006674: IPR013656: IPR003594: IPR 003607: IPR000014: IPR006675; KEGG: dap:Dacet_1017 metal dependent phosphohydrolase; PFAM: ATP-binding region ATPase domain protein; metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: uncharacterized domain HDIG
YP_004050511.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089: IPR003660; KEGG: ddf:DEFDS_0847 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: uncharacterized protein; PFAM: HAMP domain; Protein of unknown function (DUF3365); Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050512.1	COGs: COG0031 Cysteine synthase; InterPro IPR001216: IPR001926: IPR005856: IPR005859; KEGG: ddf:DEFDS_0207 cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Cysteine synthase; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_004050513.1	COGs: COG2873 O-acetylhomoserine sulfhydrylase; InterPro IPR000277: IPR006235; KEGG: ddf:DEFDS_0208 O-acetylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; PRIAM: Cysteine synthase; SPTR: O-acetylhomoserine (Thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase
YP_004050514.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddf:DEFDS_0209 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004050515.1	COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: gsu:GSU1281 cobalt ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATPase component NikO of energizing module of nickel ECF transporter; PFAM: ABC transporter
YP_004050516.1	InterPro IPR003339; KEGG: cpy:Cphy_0691 cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; SPTR: Cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: Cobalt transport protein
YP_004050517.1	COGs: COG0310 ABC-type Co2+ transport system permease component; InterPro IPR002751; KEGG: cbk:CLL_A2030 cobalamin; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; SPTR: Cobalamin; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM
YP_004050518.1	KEGG: ddf:DEFDS_0063 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004050519.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037: IPR013099; KEGG: gca:Galf_1204 TrkA-N domain-containing protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein; SPTR: TrkA-N domain protein; PFAM: Ion channel; TrkA-N domain; TrkA-C domain
YP_004050520.1	KEGG: lpa:lpa_01691 hypothetical protein; SPTR: uncharacterized protein
YP_004050521.1	KEGG: ddf:DEFDS_2154 hypothetical protein; SPTR: uncharacterized protein
YP_004050522.1	COGs: COG4786 Flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013: IPR012836; KEGG: ddf:DEFDS_2153 flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins
YP_004050523.1	COGs: COG4786 Flagellar basal body rod protein; InterPro IPR001444: IPR010930: IPR020013: IPR012834; KEGG: ddf:DEFDS_2152 flagellar basal-body rod protein FlgG; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria
YP_004050524.1	COGs: COG1261 Flagellar basal body P-ring biosynthesis protein; InterPro IPR017585; KEGG: ddf:DEFDS_2151 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: flagella basal body P-ring formation protein FlgA; TIGRFAM: flagella basal body P-ring formation protein FlgA
YP_004050525.1	COGs: COG1607 Acyl-CoA hydrolase; InterPro IPR006683; KEGG: dap:Dacet_1712 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: Thioesterase superfamily protein; PFAM: Thioesterase superfamily
YP_004050526.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: dap:Dacet_1013 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004050527.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003660: IPR003661: IPR003594: IPR 004358; KEGG: ddf:DEFDS_1825 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two-component sensor histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Protein of unknown function (DUF3365)
YP_004050528.1	COGs: COG0250 Transcription antiterminator; InterPro IPR006645; KEGG: ddf:DEFDS_1351 transcriptional activator RfaH; PFAM: NGN domain-containing protein; SMART: NGN domain-containing protein; SPTR: Transcriptional activator RfaH; PFAM: Transcription termination factor nusG; TIGRFAM: transcriptional activator RfaH
YP_004050529.1	COGs: COG2834 Outer membrane lipoprotein-sorting protein; InterPro IPR004564; KEGG: ddf:DEFDS_0271 hypothetical protein; PFAM: outer membrane lipoprotein carrier protein LolA; SPTR: uncharacterized protein; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_004050530.1	InterPro IPR001789; KEGG: cpi:Cpin_3620 two component, sigma54 specific, transcriptional regulator, fis family; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain
YP_004050531.1	KEGG: pmx:PERMA_0174 hypothetical protein; SPTR: uncharacterized protein
YP_004050532.1	COGs: COG2195 Di- and tripeptidase; InterPro IPR002933: IPR011650: IPR001160; KEGG: bvu:BVU_2372 aminoacyl-histidine dipeptidase; PFAM: peptidase dimerisation domain protein; peptidase M20; PRIAM: Xaa-His dipeptidase; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: aminoacyl-histidine dipeptidase
YP_004050533.1	COGs: COG4651 Kef-type K+ transport system predicted NAD-binding component; InterPro IPR003148: IPR006037: IPR006153; KEGG: tye:THEYE_A1050 sodium/hydrogen exchanger family/TrkA domain protein; PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; TrkA-C domain protein; SPTR: Sodium/hydrogen exchanger family/TrkA domain protein; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family
YP_004050534.1	COGs: COG2984 ABC-type uncharacterized transport system periplasmic component; InterPro IPR007487; KEGG: ddf:DEFDS_1508 ABC transporter substrate-binding protein; PFAM: protein of unknown function DUF534; SPTR: ABC transporter, substrate-binding protein; PFAM: ABC transporter substrate binding protein
YP_004050535.1	COGs: COG4120 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: ddf:DEFDS_1507 ABC transporter permease; PFAM: inner-membrane translocator; SPTR: ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004050536.1	COGs: COG1101 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: ddf:DEFDS_1506 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004050537.1	COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003395: IPR011890; KEGG: ddf:DEFDS_1341 chromosome segregation protein SMC; PFAM: SMC domain protein; SPTR: Chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_004050538.1	COGs: COG2838 Monomeric isocitrate dehydrogenase; InterPro IPR004436; KEGG: cte:CT0351 isocitrate dehydrogenase, NADP-dependent, monomeric type; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; PRIAM: Isocitrate dehydrogenase (NADP(+)); SPTR: Isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type
YP_004050539.1	COGs: COG0039 Malate/lactate dehydrogenase; InterPro IPR001236: IPR011275: IPR001557; KEGG: ddf:DEFDS_0919 malate dehydrogenase; PFAM: Lactate/malate dehydrogenase; SPTR: Malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent
YP_004050540.1	InterPro IPR017896: IPR017900; KEGG: ddf:DEFDS_0922 2-oxoglutarate ferredoxin oxidoreductase subunit delta; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S binding domain
YP_004050541.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR002880; KEGG: ddf:DEFDS_0923 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit; PFAM: domain
YP_004050542.1	COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011766; KEGG: ddf:DEFDS_0924 2-oxoglutarate ferredoxin oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, beta subunit; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_004050543.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: ddf:DEFDS_0925 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family
YP_004050544.1	KEGG: ddf:DEFDS_2118 hypothetical protein; SPTR: uncharacterized protein
YP_004050545.1	COGs: COG0495 Leucyl-tRNA synthetase; InterPro IPR001412: IPR015413: IPR013155: IPR002302; KEGG: ddf:DEFDS_0790 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_004050546.1	KEGG: ddf:DEFDS_0791 hypothetical protein; SPTR: uncharacterized protein
YP_004050547.1	COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372; KEGG: ddf:DEFDS_0792 hypothetical protein; PFAM: DNA polymerase III delta; SPTR: uncharacterized protein; PFAM: DNA polymerase III, delta subunit
YP_004050548.1	COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: ddf:DEFDS_0202 peptidase M23/M37 family; PFAM: Peptidase M23; SPTR: Peptidase, M23/M37 family; PFAM: Peptidase family M23
YP_004050549.1	InterPro IPR000064; KEGG: hth:HTH_1474 hypothetical protein; PFAM: NLP/P60 protein; SPTR: uncharacterized protein; PFAM: NlpC/P60 family
YP_004050550.1	COGs: COG0628 permease; InterPro IPR002549; KEGG: dap:Dacet_2389 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF20
YP_004050551.1	COGs: COG0196 FAD synthase; InterPro IPR015864: IPR015865: IPR002606; KEGG: ddf:DEFDS_1953 riboflavin biosynthesis regulatory protein RibF; PFAM: FAD synthetase; Riboflavin kinase; SPTR: Riboflavin biosynthesis regulatory protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_004050552.1	COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR013848: IPR020612: IPR007197: IPR006638: IPR 005840: IPR005839; KEGG: dap:Dacet_2381 MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme YliG, TIGR01125; RNA modification enzyme, MiaB family
YP_004050553.1	COGs: COG4105 DNA uptake lipoprotein; InterPro IPR019734: IPR013026: IPR001440: IPR017689; KEGG: dap:Dacet_2380 outer membrane assembly lipoprotein YfiO; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Outer membrane assembly lipoprotein YfiO; TIGRFAM: outer membrane assembly lipoprotein YfiO; PFAM: Tetratricopeptide repeat; TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_004050554.1	COGs: COG0172 Seryl-tRNA synthetase; InterPro IPR006195: IPR015866: IPR002314: IPR018156: IPR 002317; KEGG: ddf:DEFDS_1957 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; PRIAM: Serine--tRNA ligase; SPTR: Seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase
YP_004050555.1	COGs: COG0313 methyltransferase; InterPro IPR000878; KEGG: dap:Dacet_2378 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases
YP_004050556.1	COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000595: IPR000644: IPR002114: IPR005105: IPR 018821; KEGG: tye:THEYE_A0033 nucleotidyltransferase family; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: cyclic nucleotide-binding; CBS domain containing protein; SPTR: nucleotidyltransferase family; PFAM: CBS domain; nucleotidyltransferase substrate binding domain; Cyclic nucleotide-binding domain; nucleotidyltransferase DUF294
YP_004050557.1	COGs: COG4327 membrane protein; InterPro IPR019886; KEGG: ddf:DEFDS_1575 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: solute symporter protein; TIGRFAM: probable solute:sodium symporter small subunit
YP_004050558.1	COGs: COG4147 symporter; InterPro IPR001734: IPR018212: IPR019899; KEGG: afw:Anae109_3832 symporter; PFAM: Na+/solute symporter; SPTR: Symporter; TIGRFAM: sodium symporter protein; PFAM: Sodium:solute symporter family; TIGRFAM: probable sodium:solute symporter, VC_2705 subfamily; transporter, SSS family
YP_004050559.1	KEGG: dka:DKAM_0509 flagellar protein J - like protein; SPTR: uncharacterized protein
YP_004050560.1	COGs: COG3303 Formate-dependent nitrite reductase periplasmic cytochrome c552 subunit; InterPro IPR011031; KEGG: gem:GM21_1277 nitrite reductase (cytochrome; ammonia-forming); SPTR: Cytochrome c family protein; PFAM: Cytochrome c552
YP_004050561.1	COGs: COG1333 ResB protein required for cytochrome c biosynthesis; KEGG: tye:THEYE_A1060 hypothetical protein; SPTR: uncharacterized protein; PFAM: ResB-like family
YP_004050562.1	COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541: IPR017562; KEGG: tye:THEYE_A1061 cytochrome c biogenesis protein, CcmF/CcyK/CcsA family; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c biogenesis protein, CcmF/CcyK/CcsA family; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: Cytochrome C assembly protein; TIGRFAM: cytochrome c-type biogenesis protein CcsB
YP_004050563.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: ddf:DEFDS_1626 multidrug-efflux transporter MFS family; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug-efflux transporter, MFS family; PFAM: Major Facilitator Superfamily
YP_004050564.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR007197: IPR010722: IPR012726; KEGG: ddf:DEFDS_0221 thiamine biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SPTR: Thiamine biosynthesis protein ThiH; TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH
YP_004050565.1	COGs: COG2022 Uncharacterized protein of thiazole biosynthesis; InterPro IPR008867; KEGG: ddf:DEFDS_0220 thiamine biosynthesis protein ThiG; PFAM: thiazole biosynthesis family protein; SPTR: Thiazole synthase; PFAM: Thiazole biosynthesis protein ThiG
YP_004050566.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891: IPR002034: IPR013709: IPR005671; KEGG: ddf:DEFDS_1662 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain-containing protein; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain; HMGL-like; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_004050567.1	COGs: COG1183 Phosphatidylserine synthase; InterPro IPR000462: IPR004533; KEGG: ddf:DEFDS_1663 CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_004050568.1	COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR003817: IPR004428; KEGG: ddf:DEFDS_1664 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor-related protein
YP_004050569.1	COGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224; KEGG: ddf:DEFDS_1600 sugar fermentation stimulation protein A; PFAM: sugar fermentation stimulation protein; SPTR: Sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein
YP_004050570.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR000189: IPR008258; KEGG: ddf:DEFDS_1602 hypothetical protein; PFAM: Lytic transglycosylase catalytic; SPTR: uncharacterized protein; PFAM: Transglycosylase SLT domain
YP_004050571.1	COGs: COG1038 Pyruvate carboxylase; InterPro IPR000089: IPR011761: IPR011764: IPR000891: IPR 005479: IPR005481: IPR005482: IPR003379: IPR005930; KEGG: ddf:DEFDS_1275 pyruvate carboxylase; PFAM: Conserved carboxylase region; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; pyruvate carboxyltransferase; biotin/lipoyl attachment domain-containing protein; SPTR: Pyruvate carboxylase; TIGRFAM: pyruvate carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; HMGL-like; Carbamoyl-phosphate synthase L chain, N-terminal domain; Conserved carboxylase domain; Biotin-requiring enzyme; TIGRFAM: pyruvate carboxylase
YP_004050572.1	COGs: COG1151 6Fe-6S prismane cluster-containing protein; InterPro IPR004137: IPR010048; KEGG: ddf:DEFDS_0776 hydroxylamine reductase; PFAM: Prismane; SPTR: Hydroxylamine reductase; TIGRFAM: hybrid cluster protein; PFAM: Prismane/CO dehydrogenase family; TIGRFAM: hydroxylamine reductase
YP_004050573.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595: IPR012318: IPR001808; KEGG: ddf:DEFDS_1546 CRP/FNR family transcriptional regulator, anaerobic regulatory protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: CRP/FNR family transcriptional regulator, anaerobic regulatory protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_004050574.1	KEGG: xla:100037153 nuclear fragile X mental retardation protein interacting protein 2; SPTR: Transposase, IS4 family protein
YP_004050575.1	InterPro IPR002559; KEGG: lcr:LCRIS_00616 polynucleotidyl transferase, ribonuclease H fold; PFAM: transposase IS4 family protein; SPTR: uncharacterized protein
YP_004050576.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089: IPR003660; KEGG: ddf:DEFDS_0797 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050577.1	COGs: COG2217 Cation transport ATPase; InterPro IPR006121: IPR018303: IPR017969: IPR008250: IPR 005834: IPR001757: IPR001756: IPR001877: IPR006403: IPR006416; KEGG: cth:Cthe_1848 copper-translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Copper-translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004050578.1	InterPro IPR006121: IPR017969: IPR000428: IPR006122; KEGG: cob:COB47_2045 heavy metal translocating P-type ATPase; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein; TIGRFAM: copper ion binding protein; PFAM: Heavy-metal-associated domain; TIGRFAM: copper ion binding protein
YP_004050579.1	InterPro IPR016160; KEGG: mru:mru_1210 adhesin-like protein; SPTR: Hemolysin
YP_004050580.1	KEGG: dba:Dbac_2226 hypothetical protein; SPTR: uncharacterized protein
YP_004050581.1	COGs: COG1033 exporter of the RND superfamily protein; InterPro IPR000595: IPR000731: IPR018488: IPR003392: IPR 002373; KEGG: dal:Dalk_4262 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; Patched family protein; SMART: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: MMPL family; Cyclic nucleotide-binding domain
YP_004050582.1	KEGG: tde:TDE2009 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1329)
YP_004050583.1	COGs: COG0241 Histidinol phosphatase and related phosphatase; InterPro IPR006543: IPR006549; KEGG: ddf:DEFDS_0138 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain
YP_004050584.1	COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: ddf:DEFDS_0137 lipid A biosynthesis lauroyl acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: Lipid A biosynthesis lauroyl acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_004050585.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: ddf:DEFDS_0136 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_004050586.1	COGs: COG2121 conserved hypothetical protein; InterPro IPR007172; KEGG: ddf:DEFDS_0135 hypothetical protein; PFAM: protein of unknown function DUF374; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF374)
YP_004050587.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: ddf:DEFDS_0134 aminotransferase DegT/DnrJ/EryC1/StrS family; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Aminotransferase, DegT/DnrJ/EryC1/StrS family; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004050588.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR005467: IPR003661: IPR003594: IPR004358; KEGG: ddf:DEFDS_1377 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box
YP_004050589.1	COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: ddf:DEFDS_1017 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: Probable molybdopterin-guanine dinucleotide biosynthesis protein A
YP_004050590.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR000183: IPR002986; KEGG: mac:MA0726 diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Diaminopimelate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase
YP_004050591.1	COGs: COG0360 Ribosomal protein S6; InterPro IPR020814: IPR000529; KEGG: ddf:DEFDS_1987 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; SPTR: 30S ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_004050592.1	COGs: COG0629 Single-stranded DNA-binding protein; InterPro IPR000424: IPR011344; KEGG: ddf:DEFDS_1988 single-strand DNA binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; SPTR: Single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_004050593.1	COGs: COG0238 Ribosomal protein S18; InterPro IPR018275: IPR001648; KEGG: dap:Dacet_0006 30S ribosomal protein S18; PFAM: ribosomal protein S18; SPTR: 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_004050594.1	InterPro IPR018710; KEGG: ddf:DEFDS_1990 hypothetical protein; PFAM: Protein of unknown function DUF2232, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2232)
YP_004050595.1	COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: ddf:DEFDS_1992 cation efflux protein; PFAM: cation efflux protein; SPTR: Cation efflux protein; TIGRFAM: cation diffusion facilitator family transporter; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_004050596.1	InterPro IPR000644; KEGG: dol:Dole_2123 CBS domain-containing protein; PFAM: CBS domain containing protein; SPTR: CBS domain containing membrane protein; PFAM: CBS domain
YP_004050597.1	COGs: COG1055 Na+/H+ antiporter NhaD and related arsenite permease; InterPro IPR004680: IPR000802; KEGG: dma:DMR_06440 arsenical pump membrane protein; PFAM: Citrate transporter; SPTR: Arsenical pump membrane protein; PFAM: Citrate transporter; TC 2.A.45.2.1
YP_004050598.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004050599.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: swo:Swol_0155 hypothetical protein; PFAM: transposase mutator type; SPTR: uncharacterized protein; PFAM: Transposase, Mutator family
YP_004050600.1	COGs: COG1863 Multisubunit Na+/H+ antiporter MnhE subunit; InterPro IPR002758; KEGG: dak:DaAHT2_2517 cation antiporter; PFAM: cation antiporter; SPTR: DNA topoisomerase IV subunit A; PFAM: Na+/H+ ion antiporter subunit
YP_004050601.1	InterPro IPR007208; KEGG: fpl:Ferp_0723 multiple resistance and pH regulation protein F; PFAM: multiple resistance and pH regulation protein F; SPTR: Multiple resistance and pH regulation protein F; PFAM: Multiple resistance and pH regulation protein F (MrpF / PhaF); TC 2.A.63.1
YP_004050602.1	COGs: COG1320 Multisubunit Na+/H+ antiporter MnhG subunit; InterPro IPR005133; KEGG: fpl:Ferp_0722 monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; SPTR: Monovalent cation/proton antiporter, MnhG/PhaG subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit
YP_004050603.1	KEGG: pla:Plav_2970 multicomponent Na+-H+ antiporter subunit A; SPTR: multicomponent Na+-H+ antiporter subunit A
YP_004050604.1	InterPro IPR007182; KEGG: swp:swp_0938 monovalent cation/H+ antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: Na+/H+ antiporter MnhB subunit-related protein; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter
YP_004050605.1	COGs: COG1006 Multisubunit Na+/H+ antiporter MnhC subunit; InterPro IPR001133; KEGG: spl:Spea_3283 NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone oxidoreductase chain 4L; SPTR: NADH-ubiquinone oxidoreductase chain 4L; PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L; TC 2.A.63.1
YP_004050606.1	COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750: IPR003918; KEGG: rba:RB1431 monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH dehydrogenase/oxidoreductase; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_004050607.1	COGs: COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter MnhA subunit; InterPro IPR001750: IPR003916; KEGG: dat:HRM2_35350 MnhA2; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: NADH-ubiquinone/plastoquinone (Complex I), subunit; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TC 2.A.63.1
YP_004050608.1	KEGG: kko:Kkor_0771 hypothetical protein; SPTR: uncharacterized protein
YP_004050609.1	COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR001750; KEGG: dal:Dalk_4926 monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: monovalent cation/H+ antiporter subunit D; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TC 2.A.63.1
YP_004050610.1	COGs: COG0855 Polyphosphate kinase; InterPro IPR003414; KEGG: dap:Dacet_3002 polyphosphate kinase; PFAM: Polyphosphate kinase; PRIAM: Polyphosphate kinase; SPTR: Polyphosphate kinase; TIGRFAM: Polyphosphate kinase; PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_004050611.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695: IPR006674; KEGG: dap:Dacet_3001 exopolyphosphatase-like protein; PFAM: metal-dependent phosphohydrolase HD sub domain; Ppx/GppA phosphatase; SPTR: Exopolyphosphatase-like protein; PFAM: HD domain; Ppx/GppA phosphatase family
YP_004050612.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695: IPR006674: IPR003607; KEGG: dap:Dacet_3000 Ppx/GppA phosphatase; PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Ppx/GppA phosphatase; PFAM: HD domain; Ppx/GppA phosphatase family
YP_004050613.1	InterPro IPR001623: IPR013026: IPR019734; KEGG: ddf:DEFDS_1649 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: DnaJ domain
YP_004050614.1	COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852; KEGG: ddf:DEFDS_1847 TRAP-type transporter substrate-binding protein; SPTR: TRAP-type transport system, substrate-binding protein; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family
YP_004050615.1	COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR010656: IPR011853; KEGG: ddf:DEFDS_1846 TRAP-type transporter permease component; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP-type transport system, permease component; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein
YP_004050616.1	COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: ddf:DEFDS_1259 patatin-like phospholipase family protein; PFAM: Patatin; SPTR: Patatin-like phospholipase family protein; PFAM: Patatin-like phospholipase
YP_004050617.1	InterPro IPR000412: IPR013525; KEGG: ddf:DEFDS_1590 multidrug ABC transporter permease; PFAM: ABC-2 type transporter; SPTR: Multidrug ABC transporter, permease; PFAM: ABC-2 type transporter
YP_004050618.1	InterPro IPR000412: IPR013525; KEGG: ddf:DEFDS_1589 multidrug ABC transporter permease; PFAM: ABC-2 type transporter; SPTR: Multidrug ABC transporter, permease; PFAM: ABC-2 type transporter
YP_004050619.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: ddf:DEFDS_1588 multidrug ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Multidrug ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004050620.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997; KEGG: ddf:DEFDS_1587 hypothetical protein; SPTR: uncharacterized protein
YP_004050621.1	InterPro IPR007899; KEGG: dap:Dacet_2998 CHAD domain containing protein; PFAM: CHAD domain containing protein; SPTR: CHAD; PFAM: CHAD domain
YP_004050622.1	COGs: COG2062 Phosphohistidine phosphatase SixA; InterPro IPR013078; KEGG: dap:Dacet_2997 phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase; SPTR: phosphohistidine phosphatase, SixA; PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_004050623.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: son:SO_2295 MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Probable multidrug resistance protein norM; TIGRFAM: MATE efflux family protein; manually curated; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004050624.1	COGs: COG0693 intracellular protease/amidase; InterPro IPR006286: IPR002818; KEGG: ddf:DEFDS_2037 intracellular protease PfpI family; PFAM: ThiJ/PfpI domain-containing protein; SPTR: Intracellular protease, PfpI family; TIGRFAM: intracellular protease, PfpI family; PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family
YP_004050625.1	COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR000595; KEGG: ddf:DEFDS_0849 hypothetical protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: uncharacterized protein; PFAM: Cyclic nucleotide-binding domain
YP_004050626.1	COGs: COG1305 Transglutaminase-like protein; InterPro IPR002931; KEGG: ddf:DEFDS_2034 hypothetical protein; PFAM: transglutaminase domain-containing protein; SMART: transglutaminase domain-containing protein; SPTR: uncharacterized protein; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488)
YP_004050627.1	COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: ddf:DEFDS_2035 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF58
YP_004050628.1	COGs: COG0714 MoxR-like ATPase; InterPro IPR011703: IPR003593: IPR016366; KEGG: ddf:DEFDS_2036 ATPase AAA family; PFAM: ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; SPTR: ATPase, AAA family; PFAM: ATPase family associated with various cellular activities (AAA)
YP_004050629.1	COGs: COG1252 NADH dehydrogenase FAD-containing subunit; InterPro IPR013027: IPR000103; KEGG: dap:Dacet_2753 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004050630.1	COGs: COG0680 Ni Fe-hydrogenase maturation factor; InterPro IPR000671; KEGG: dap:Dacet_2487 hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; SPTR: Hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: Hydrogenase maturation protease; TIGRFAM: hydrogenase expression/formation protein; hydrogenase maturation protease
YP_004050631.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR020845: IPR000873; KEGG: ddf:DEFDS_0642 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme
YP_004050632.1	COGs: COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; InterPro IPR003697; KEGG: ddf:DEFDS_0643 septum formation protein; PFAM: Maf family protein; SPTR: Maf-like protein DEFDS_0643; TIGRFAM: maf protein; PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_004050633.1	InterPro IPR010898; KEGG: ddf:DEFDS_0644 hypothetical protein; PFAM: Heptaprenyl diphosphate synthase component I; SPTR: uncharacterized protein; PFAM: Heptaprenyl diphosphate synthase component I
YP_004050634.1	COGs: COG5341 conserved hypothetical protein; InterPro IPR010739; KEGG: ddf:DEFDS_0645 hypothetical protein; PFAM: protein of unknown function DUF1312; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1312)
YP_004050635.1	COGs: COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis; InterPro IPR003374; KEGG: ddf:DEFDS_0646 thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE family lipoprotein; SPTR: Thiamine biosynthesis lipoprotein ApbE; PFAM: ApbE family
YP_004050636.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197: IPR016431; KEGG: ddf:DEFDS_0647 pyruvate-formate lyase-activating enzyme; PFAM: Radical SAM domain protein; SPTR: Pyruvate-formate lyase-activating enzyme; PFAM: Radical SAM superfamily
YP_004050637.1	COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ddf:DEFDS_0648 octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase; SPTR: Octaprenyl-diphosphate synthase; PFAM: Polyprenyl synthetase
YP_004050638.1	KEGG: ddf:DEFDS_0649 hypothetical protein; SPTR: uncharacterized protein
YP_004050639.1	COGs: COG0251 translation initiation inhibitor yjgF family; InterPro IPR019897: IPR006175: IPR006056; KEGG: ddf:DEFDS_0650 translation initiation inhibitor; PFAM: Endoribonuclease L-PSP; SPTR: Translation initiation inhibitor; TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_004050640.1	COGs: COG4799 acetyl-CoA carboxylase carboxyltransferase component (subunits alpha and beta); InterPro IPR011762: IPR011763: IPR000022; KEGG: ddf:DEFDS_1228 propionyl-CoA carboxylase subunit beta; PFAM: carboxyl transferase; SPTR: Propionyl-CoA carboxylase, beta subunit; PFAM: Carboxyl transferase domain
YP_004050641.1	COGs: COG4770 acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR011761: IPR011764: IPR005479: IPR005481: IPR 005482; KEGG: ddf:DEFDS_1227 propionyl-CoA carboxylase subunit alpha; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; SPTR: Propionyl-CoA carboxylase, alpha subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_004050642.1	COGs: COG4770 acetyl/propionyl-CoA carboxylase alpha subunit; InterPro IPR000089: IPR001882; KEGG: ddf:DEFDS_1226 biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; SPTR: Biotin carboxyl carrier protein; PFAM: Biotin-requiring enzyme
YP_004050643.1	COGs: COG1884 Methylmalonyl-CoA mutase N-terminal domain/subunit; InterPro IPR006158: IPR006099: IPR006098: IPR006159; KEGG: dap:Dacet_1930 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; PRIAM: Methylmalonyl-CoA mutase; SPTR: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: Methylmalonyl-CoA mutase; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain
YP_004050644.1	COGs: COG1703 periplasmic protein kinase ArgK and related GTPase of G3E family; InterPro IPR005129: IPR003593; KEGG: dap:Dacet_1929 LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; SPTR: LAO/AO transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase
YP_004050645.1	COGs: COG0499 S-adenosylhomocysteine hydrolase; InterPro IPR020082: IPR000043: IPR015878; KEGG: dap:Dacet_1441 adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; PRIAM: Adenosylhomocysteinase; SPTR: Adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_004050646.1	COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: tye:THEYE_A0116 transcriptional regulator, TetR family; PFAM: regulatory protein TetR; SPTR: uncharacterized protein; PFAM: Bacterial regulatory proteins, tetR family
YP_004050647.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: sfu:Sfum_3680 secretion protein HlyD family protein; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004050648.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036: IPR004764; KEGG: sfu:Sfum_3679 acriflavin resistance protein; PFAM: acriflavin resistance protein; SPTR: Acriflavine resistance protein B; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004050649.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: tye:THEYE_A1620 outer membrane protein OprM; PFAM: outer membrane efflux protein; SPTR: Outer membrane protein OprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_004050650.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052: IPR003356: IPR002296; KEGG: nis:NIS_1707 type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: Type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_004050651.1	KEGG: nis:NIS_1706 death-on-curing family protein; SPTR: Death-on-curing family protein
YP_004050652.1	COGs: COG2865 transcriptional regulator protein; InterPro IPR001845: IPR007421; KEGG: ddf:DEFDS_0288 ATP-dependent DNA helicase; PFAM: AAA-4 family protein; SPTR: ATP-dependent DNA helicase; PFAM: Sugar-specific transcriptional regulator TrmB; Divergent AAA domain
YP_004050653.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: pmz:HMPREF0659_A6119 type I restriction modification DNA specificity domain protein; PFAM: restriction modification system DNA specificity domain; SPTR: HsdS; PFAM: Type I restriction modification DNA specificity domain
YP_004050654.1	InterPro IPR012657; KEGG: fjo:Fjoh_0085 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004050655.1	COGs: COG0610 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014021: IPR001650: IPR007409: IPR006935: IPR 014001: IPR004473; KEGG: nis:NIS_1703 type I restriction-modification system, R subunit; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase; SPTR: Type I restriction-modification system, R subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_004050656.1	COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR001460; KEGG: ddf:DEFDS_0448 hypothetical protein; PFAM: penicillin-binding protein transpeptidase; SPTR: uncharacterized protein; PFAM: Penicillin binding protein transpeptidase domain
YP_004050657.1	COGs: COG0127 Xanthosine triphosphate pyrophosphatase; InterPro IPR002637: IPR020922; KEGG: dap:Dacet_0057 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1 family protein; SPTR: Nucleoside-triphosphatase; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
YP_004050658.1	COGs: COG0689 RNase PH; InterPro IPR018336: IPR001247: IPR015847: IPR002381; KEGG: ddf:DEFDS_0446 tRNA nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; PRIAM: tRNA nucleotidyltransferase; SPTR: Ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_004050659.1	KEGG: sew:SeSA_B0100 histidine kinase; SPTR: uncharacterized protein
YP_004050660.1	COGs: COG2878 NADH:ubiquinone oxidoreductase subunit RnfB; InterPro IPR017896: IPR017900: IPR007202: IPR010207; KEGG: ddf:DEFDS_0492 electron transport complex protein RnfB; PFAM: Fe-S cluster domain protein; SPTR: Electron transport complex protein RnfB; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: Fe-S cluster; 4Fe-4S binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit
YP_004050661.1	COGs: COG4657 NADH:ubiquinone oxidoreductase subunit RnfA; InterPro IPR003667: IPR011293; KEGG: ddf:DEFDS_0491 electron transport complex protein RnfA; PFAM: RnfA-Nqr electron transport subunit; SPTR: Electron transport complex protein RnfA; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, A subunit
YP_004050662.1	COGs: COG4660 NADH:ubiquinone oxidoreductase subunit RnfE; InterPro IPR003667: IPR010968; KEGG: ddf:DEFDS_0490 electron transport complex protein RnfE; PFAM: RnfA-Nqr electron transport subunit; SPTR: Electron transport complex protein RnfE; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: electron transport complex, RnfABCDGE type, E subunit
YP_004050663.1	COGs: COG4659 NADH:ubiquinone oxidoreductase subunit RnfG; InterPro IPR007329: IPR010209; KEGG: ddf:DEFDS_0489 electron transport complex protein RnfG; PFAM: FMN-binding domain protein; SPTR: Electron transport complex protein RnfG; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain; TIGRFAM: electron transport complex, RnfABCDGE type, G subunit
YP_004050664.1	COGs: COG4658 NADH:ubiquinone oxidoreductase subunit RnfD; InterPro IPR004338: IPR011303; KEGG: ddf:DEFDS_0488 electron transport complex protein RnfD; PFAM: NQR2 and RnfD family protein; SPTR: Electron transport complex protein RnfD; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: electron transport complex, RnfABCDGE type, D subunit
YP_004050665.1	COGs: COG4656 NADH:ubiquinone oxidoreductase subunit RnfC; InterPro IPR017896: IPR017900: IPR011538: IPR019554: IPR 010208; KEGG: ddf:DEFDS_0487 electron transport complex protein RnfC; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; SPTR: Electron transport complex protein RnfC; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: electron transport complex, RnfABCDGE type, C subunit
YP_004050666.1	COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016192: IPR002125: IPR016473; KEGG: ddf:DEFDS_0486 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: CMP/dCMP deaminase, zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004050667.1	COGs: COG0112 Glycine/serine hydroxymethyltransferase; InterPro IPR019798: IPR001085; KEGG: ddf:DEFDS_0485 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; PRIAM: Glycine hydroxymethyltransferase; SPTR: Serine hydroxymethyltransferase; PFAM: Serine hydroxymethyltransferase
YP_004050668.1	COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500: IPR004785; KEGG: ddf:DEFDS_0484 ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family
YP_004050669.1	KEGG: ddf:DEFDS_1790 hypothetical protein; SPTR: uncharacterized protein
YP_004050670.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006158: IPR007197: IPR006638; KEGG: ddf:DEFDS_0799 hypothetical protein; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004050671.1	COGs: COG1030 Membrane-bound serine protease (ClpP class); InterPro IPR002810; KEGG: dap:Dacet_0511 hypothetical protein; PFAM: protein of unknown function DUF107; SPTR: uncharacterized protein; PFAM: Clp protease; NfeD-like
YP_004050672.1	COGs: COG0220 S-adenosylmethionine-dependent methyltransferase; InterPro IPR003358; KEGG: ddf:DEFDS_0801 methyltransferase; PFAM: methyltransferase; SPTR: tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_004050673.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: ddf:DEFDS_0802 hypothetical protein; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily
YP_004050674.1	InterPro IPR015077; KEGG: ddf:DEFDS_0803 hypothetical protein; PFAM: Domain of unknown function DUF1858; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1858)
YP_004050675.1	COGs: COG0350 Methylated DNA-protein cysteine methyltransferase; InterPro IPR001497: IPR014048; KEGG: ddf:DEFDS_0223 methylated-DNA--[protein]-cysteine S-methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: Methylated-DNA--[protein]-cysteine S-methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_004050676.1	COGs: COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; InterPro IPR018236: IPR001636; KEGG: ddf:DEFDS_1861 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; PRIAM: Phosphoribosylaminoimidazolesuccinocarboxamide synthase; SPTR: Phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_004050677.1	COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR001763: IPR013027: IPR004099; KEGG: dap:Dacet_0835 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Rhodanese-like domain
YP_004050678.1	COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR013848: IPR020612: IPR007197: IPR006638: IPR 005839: IPR006467; KEGG: ddf:DEFDS_1859 hypothetical protein; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family
YP_004050679.1	COGs: COG2844 UTP:GlnB (protein PII) uridylyltransferase; InterPro IPR002934: IPR013546: IPR006674: IPR002912: IPR 003607: IPR010043; KEGG: ddf:DEFDS_1857 protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; DNA polymerase beta domain protein region; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; PRIAM: [Protein-PII] uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; SPTR: Protein-P-II uridylyltransferase; PFAM: GlnD PII-uridylyltransferase; HD domain; Nucleotidyltransferase domain; TIGRFAM: [Protein-PII] uridylyltransferase
YP_004050680.1	KEGG: mlo:mll0525 hypothetical protein; SPTR: Mll0525 protein
YP_004050681.1	KEGG: ddf:DEFDS_1277 hypothetical protein; SPTR: uncharacterized protein; PFAM: Stringent starvation protein B
YP_004050682.1	COGs: COG1893 Ketopantoate reductase; InterPro IPR003710: IPR013332: IPR013752; KEGG: clj:CLJU_c08720 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; PRIAM: 2-dehydropantoate 2-reductase; SPTR: 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_004050683.1	COGs: COG0731 Fe-S oxidoreductase; InterPro IPR006638: IPR007197; KEGG: ddf:DEFDS_0828 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004050684.1	KEGG: drt:Dret_1494 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria C-term(DUF2220)
YP_004050685.1	COGs: COG3096 conserved hypothetical protein involved in chromosome partitioning; InterPro IPR004969; KEGG: drt:Dret_1493 SMC domain protein; SPTR: SMC domain protein; PFAM: MukB N-terminal
YP_004050686.1	KEGG: mcd:MCRO_0480 hypothetical protein; SPTR: uncharacterized protein
YP_004050687.1	KEGG: drt:Dret_1491 hypothetical protein; SPTR: uncharacterized protein
YP_004050688.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddf:DEFDS_1113 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004050689.1	InterPro IPR013344: IPR013509: IPR000788; KEGG: ddf:DEFDS_1169 ribonucleoside-diphosphate reductase alpha chain; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; PRIAM: Ribonucleoside-diphosphate reductase; SPTR: Ribonucleoside-diphosphate reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase, all-alpha domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
YP_004050690.1	KEGG: ddf:DEFDS_0297 hypothetical protein; SPTR: uncharacterized protein; PFAM: DsrE/DsrF-like family
YP_004050691.1	InterPro IPR017900: IPR000813: IPR017896; KEGG: ddf:DEFDS_2170 4Fe-4S ferredoxin; SPTR: 4Fe-4S ferredoxin; PFAM: 4Fe-4S binding domain
YP_004050692.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR005881: IPR001451; KEGG: ddf:DEFDS_2169 serine O-acetyltransferase; SPTR: Serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: Serine acetyltransferase, N-terminal; Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase
YP_004050693.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddf:DEFDS_2168 Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004050694.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192: IPR016454: IPR020578; KEGG: ddf:DEFDS_2167 cysteine desulfurase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS
YP_004050695.1	KEGG: ddf:DEFDS_1866 hypothetical protein; SPTR: uncharacterized protein
YP_004050696.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651: IPR004035; KEGG: ddf:DEFDS_1865 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; SPTR: Endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_004050697.1	COGs: COG1522 Transcriptional regulators; InterPro IPR019888: IPR019887: IPR000485; KEGG: ddf:DEFDS_1864 AsnC family transcriptional regulator; PFAM: Transcription regulator AsnC-type-like; SMART: Transcription regulator AsnC-type; SPTR: Transcriptional regulator, AsnC family; PFAM: AsnC family
YP_004050698.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dap:Dacet_2405 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004050699.1	COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: dal:Dalk_0438 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family
YP_004050700.1	COGs: COG1592 Rubrerythrin; InterPro IPR003251: IPR004039: IPR009040; KEGG: ddf:DEFDS_0019 rubrerythrin; PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; SPTR: Rubrerythrin; PFAM: Rubrerythrin
YP_004050701.1	KEGG: dat:HRM2_45060 hypothetical protein; SPTR: uncharacterized protein
YP_004050702.1	COGs: COG2871 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrF; InterPro IPR010205: IPR001041: IPR008333: IPR001433: IPR 001709: IPR017927; KEGG: dap:Dacet_2017 NADH:ubiquinone oxidoreductase, subunit F; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; Oxidoreductase FAD-binding domain protein; SPTR: NADH:ubiquinone oxidoreductase, subunit F; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit
YP_004050703.1	COGs: COG2209 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrE; InterPro IPR010967: IPR003667; KEGG: dap:Dacet_2018 NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; SPTR: Na(+)-translocating NADH-quinone reductase subunit E; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit
YP_004050704.1	COGs: COG1347 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrD; InterPro IPR011292: IPR003667: IPR002052; KEGG: ddf:DEFDS_1915 Na(+)-translocating NADH-quinone reductase subunit D; PFAM: RnfA-Nqr electron transport subunit; SPTR: Na(+)-translocating NADH-quinone reductase subunit D; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: Rnf-Nqr subunit, membrane protein; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit
YP_004050705.1	COGs: COG2869 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrC; InterPro IPR010204: IPR007329; KEGG: dap:Dacet_2020 NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; SPTR: NADH:ubiquinone oxidoreductase, subunit C; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit
YP_004050706.1	COGs: COG1805 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrB; InterPro IPR010966: IPR004338; KEGG: dap:Dacet_2021 NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2 and RnfD family protein; SPTR: NADH:ubiquinone oxidoreductase, subunit B; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit B; PFAM: NQR2, RnfD, RnfE family; TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit
YP_004050707.1	COGs: COG1726 Na+-transporting NADH:ubiquinone oxidoreductase subunit NqrA; InterPro IPR008703; KEGG: maq:Maqu_1931 Na(+)-translocating NADH-quinone reductase subunit A; PFAM: Na-translocating NADH-quinone reductase subunit A; SPTR: Na(+)-translocating NADH-quinone reductase subunit A; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit A; PFAM: NQRA C-terminal domain; Na(+)-translocating NADH-quinone reductase subunit A (NQRA); TIGRFAM: NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit
YP_004050708.1	COGs: COG0496 acid phosphatase; InterPro IPR002828; KEGG: ddf:DEFDS_1267 stationary-phase survival protein; PFAM: Survival protein SurE; SPTR: 5'-nucleotidase surE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_004050709.1	KEGG: dap:Dacet_1100 hypothetical protein; SPTR: uncharacterized protein
YP_004050710.1	KEGG: ddf:DEFDS_1266 hypothetical protein; SPTR: uncharacterized protein
YP_004050711.1	COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: ddf:DEFDS_1265 biopolymer transport protein, ExbB/TolQ family; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Biopolymer transport protein, ExbB/TolQ family; PFAM: MotA/TolQ/ExbB proton channel family
YP_004050712.1	COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: dap:Dacet_1103 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_004050713.1	KEGG: ddf:DEFDS_1263 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: TonB family C-terminal domain
YP_004050714.1	COGs: COG1565 conserved hypothetical protein; InterPro IPR003788; KEGG: ddf:DEFDS_1262 hypothetical protein; PFAM: protein of unknown function DUF185; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1565
YP_004050715.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145: IPR002942; KEGG: ddf:DEFDS_0560 hypothetical protein; PFAM: pseudouridine synthase; SPTR: uncharacterized protein; PFAM: RNA pseudouridylate synthase
YP_004050716.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197: IPR 020441; KEGG: ddf:DEFDS_1454 two-component, sigma54 specific, transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component, sigma54 specific, transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004050717.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR004358: IPR005467; KEGG: ddf:DEFDS_1455 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050718.1	COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; InterPro IPR005770; KEGG: ddf:DEFDS_1456 phosphate/phosphonate ABC transporter substrate-binding protein; SPTR: Phosphate/phosphonate ABC transporter, substrate-binding protein; TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; TIGRFAM: phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein
YP_004050719.1	KEGG: gur:Gura_0469 hypothetical protein; SPTR: uncharacterized protein
YP_004050720.1	COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR006311: IPR017900: IPR017909: IPR017896; KEGG: pas:Pars_0387 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; PFAM: 4Fe-4S binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004050721.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006311: IPR006963: IPR006656: IPR006657: IPR 017909; KEGG: pai:PAE1265 molybdopterin oxidoreductase, molybdopterin binding subunit; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; SPTR: Molybdopterin oxidoreductase, molybdopterin binding subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004050722.1	KEGG: pfa:PF13_0284 conserved Plasmodium protein, unknown function; SPTR: uncharacterized protein
YP_004050723.1	COGs: COG0760 Parvulin-like peptidyl-prolyl isomerase; InterPro IPR000297; KEGG: ddf:DEFDS_1151 hypothetical protein; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SPTR: uncharacterized protein; PFAM: PPIC-type PPIASE domain
YP_004050724.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: tai:Taci_0382 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase; PFAM: Nitroreductase family
YP_004050725.1	COGs: COG0669 Phosphopantetheine adenylyltransferase; InterPro IPR004821: IPR001980: IPR004820; KEGG: ddf:DEFDS_0158 phosphopantetheine adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Pantetheine-phosphate adenylyltransferase; SPTR: Phosphopantetheine adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_004050726.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ddf:DEFDS_0160 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain
YP_004050727.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: ddf:DEFDS_0161 twitching motility two-component system response regulator PilH; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Twitching motility two-component system response regulator PilH; PFAM: Response regulator receiver domain
YP_004050728.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: csc:Csac_0818 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: CheW protein; PFAM: CheW-like domain
YP_004050729.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660: IPR004089; KEGG: ddf:DEFDS_0163 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: uncharacterized protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050730.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR008207: IPR003594: IPR002545: IPR001789: IPR 004358: IPR005467; KEGG: ddf:DEFDS_0164 hypothetical protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; SPTR: uncharacterized protein; PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; Hpt domain
YP_004050731.1	KEGG: ddf:DEFDS_0165 hypothetical protein; SPTR: uncharacterized protein
YP_004050732.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ddf:DEFDS_0166 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain
YP_004050733.1	COGs: COG0150 Phosphoribosylaminoimidazole (AIR) synthetase; InterPro IPR004733: IPR000728: IPR010918; KEGG: dap:Dacet_3019 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: Phosphoribosylformylglycinamidine cyclo-ligase; SPTR: Phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_004050734.1	COGs: COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN; InterPro IPR004607: IPR002376: IPR001555; KEGG: ddf:DEFDS_0168 phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; SPTR: Phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_004050735.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863; KEGG: dap:Dacet_3021 peptidase M16 domain protein; PFAM: peptidase M16 domain protein; SPTR: Peptidase M16 domain protein; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004050736.1	COGs: COG0450 Peroxiredoxin; InterPro IPR000866: IPR019479: IPR017936; KEGG: ddf:DEFDS_0018 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004050737.1	COGs: COG1528 Ferritin-like protein; InterPro IPR008331: IPR009040; KEGG: ddf:DEFDS_0829 ferritin; PFAM: Ferritin Dps family protein; PRIAM: Ferroxidase; SPTR: Ferritin; PFAM: Ferritin-like domain
YP_004050738.1	COGs: COG0317 Guanosine polyphosphate pyrophosphohydrolase/synthetase; InterPro IPR004811: IPR003607: IPR006674: IPR007685: IPR 004095: IPR002912; KEGG: ddf:DEFDS_0048 GTP pyrophosphokinase; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain-containing protein; amino acid-binding ACT domain protein; PRIAM: GTP diphosphokinase; SMART: metal-dependent phosphohydrolase HD region; SPTR: GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_004050739.1	COGs: COG0608 Single-stranded DNA-specific exonuclease; InterPro IPR004610: IPR001667: IPR003156; KEGG: ddf:DEFDS_0047 single-strand DNA-specific exonuclease; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Single-strand DNA-specific exonuclease; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_004050740.1	COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: tye:THEYE_A1167 sulfur transferase, selenocysteine-containing protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: sulfur transferase, selenocysteine-containing protein; PFAM: Rhodanese-like domain
YP_004050741.1	COGs: COG0556 Helicase subunit of the DNA excision repair complex; InterPro IPR004807: IPR014001: IPR001650: IPR006935: IPR 001943: IPR014021; KEGG: ddf:DEFDS_0663 excinuclease ABC subunit B; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: UvrABC system protein B; TIGRFAM: excinuclease ABC, B subunit; manually curated; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_004050742.1	COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR011816: IPR001264: IPR001460; KEGG: ddf:DEFDS_0662 penicillin-binding protein 1A; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family
YP_004050743.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterPro IPR003594: IPR004358: IPR005467; KEGG: dap:Dacet_0840 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050744.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789: IPR003593: IPR002078: IPR002197: IPR 020441; KEGG: ddf:DEFDS_0660 two-component system, NtrC family, nitrogen regulation response regulator GlnG; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component system, NtrC family, nitrogen regulation response regulator GlnG; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004050745.1	COGs: COG0557 Exoribonuclease R; InterPro IPR011805: IPR004476: IPR011129: IPR013223: IPR 001900: IPR003029: IPR000209; KEGG: ddf:DEFDS_0659 ribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein; SPTR: Ribonuclease; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: Ribonuclease B OB domain; RNB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_004050746.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR000891: IPR002034; KEGG: dap:Dacet_1054 pyruvate carboxyltransferase; PFAM: pyruvate carboxyltransferase; SPTR: Pyruvate carboxyltransferase; PFAM: HMGL-like
YP_004050747.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638: IPR007197: IPR000385; KEGG: dap:Dacet_1055 nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB
YP_004050748.1	KEGG: dap:Dacet_1056 hypothetical protein; SPTR: uncharacterized protein
YP_004050749.1	COGs: COG3604 Transcriptional regulator containing GAF AAA-type ATPase and DNA binding domains; InterPro IPR003593: IPR002078: IPR002197: IPR020441; KEGG: dap:Dacet_1039 transcriptional regulator, NifA subfamily, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; SPTR: Transcriptional regulator, NifA, Fis Family; PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: Nif-specific regulatory protein
YP_004050750.1	InterPro IPR007415; KEGG: dap:Dacet_1041 NifZ family protein; PFAM: NifZ family protein; SPTR: NifZ family protein; PFAM: NifZ domain
YP_004050751.1	InterPro IPR014283: IPR017900: IPR017896; KEGG: rsk:RSKD131_1869 4Fe-4S ferredoxin, iron-sulfur binding domain protein; SPTR: dimeric ferredoxin (FdIII); TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S binding domain; TIGRFAM: ferredoxin III, nif-specific
YP_004050752.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: dap:Dacet_1050 nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifE
YP_004050753.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000510; KEGG: dap:Dacet_1051 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: Nitrogenase molybdenum-iron cofactor biosynthesis protein NifN; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
YP_004050754.1	InterPro IPR003731; KEGG: tye:THEYE_A1713 nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogen fixation protein NifX
YP_004050755.1	KEGG: naz:Aazo_1347 nitrogen fixation protein; SPTR: Nitrogen fixation protein; PFAM: Protein of unknown function, DUF269; TIGRFAM: probable nitrogen fixation protein
YP_004050756.1	COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: dap:Dacet_1043 ADP-ribosyl-(dinitrogen reductase) hydrolase; PFAM: ADP-ribosylation/Crystallin J1; PRIAM: ADP-ribosyl-[dinitrogen reductase] hydrolase; SPTR: ADP-ribosyl-(Dinitrogen reductase) hydrolase; PFAM: ADP-ribosylglycohydrolase; TIGRFAM: ADP-ribosyl-[dinitrogen reductase] hydrolase
YP_004050757.1	InterPro IPR009953; KEGG: dap:Dacet_1042 NAD(+)--dinitrogen-reductaseADP-D-ribosyltransfe rase; PFAM: Dinitrogenase reductase ADP-ribosyltransferase; PRIAM: NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; SPTR: NAD(+)--dinitrogen-reductaseADP-D-ribosyltransfe rase; PFAM: Dinitrogenase reductase ADP-ribosyltransferase (DRAT)
YP_004050758.1	COGs: COG1348 Nitrogenase subunit NifH (ATPase); InterPro IPR005977: IPR000392; KEGG: dap:Dacet_1046 nitrogenase iron protein; PFAM: NifH/frxC-family protein; PRIAM: Nitrogenase; SPTR: Nitrogenase iron protein; TIGRFAM: nitrogenase iron protein; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; TIGRFAM: nitrogenase iron protein
YP_004050759.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR005972: IPR010143: IPR000510: IPR000318; KEGG: dap:Dacet_1047 nitrogenase molybdenum-iron protein alpha chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: Nitrogenase protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase molybdenum-iron protein alpha chain
YP_004050760.1	COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR005976: IPR000510: IPR000318; KEGG: dap:Dacet_1048 nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: Nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: Domain of unknown function (DUF3364); Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase molybdenum-iron protein beta chain
YP_004050761.1	InterPro IPR009727; KEGG: dap:Dacet_1049 nitrogen fixation protein FixT; PFAM: NifT/FixU family protein; SPTR: Nitrogen fixation protein FixT; TIGRFAM: nitrogen fixation protein FixT; PFAM: NifT/FixU protein; TIGRFAM: probable nitrogen fixation protein FixT
YP_004050762.1	COGs: COG4148 ABC-type molybdate transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: saf:SULAZ_0044 spermidine/putrescine import ATP-binding protein PotA; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATPase; PFAM: ABC transporter
YP_004050763.1	COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR011867: IPR000515; KEGG: tdn:Suden_0925 molybdate ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Molybdate ABC transporter, permease protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein
YP_004050764.1	COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR005950: IPR006059; KEGG: aae:aq_1609 molybdate periplasmic binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Molybdate periplasmic binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_004050765.1	COGs: COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidase); InterPro IPR006200: IPR006199: IPR019759: IPR006197; KEGG: dap:Dacet_1375 transcriptional repressor, LexA family; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region; SPTR: LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA
YP_004050766.1	KEGG: ddf:DEFDS_0499 hypothetical protein; SPTR: uncharacterized protein
YP_004050767.1	COGs: COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair; InterPro IPR001126: IPR017963; KEGG: ddf:DEFDS_0477 DNA polymerase IV; PFAM: UMUC domain protein DNA-repair protein; PRIAM: DNA-directed DNA polymerase; SPTR: DNA polymerase IV; PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family
YP_004050768.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_1066 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004050769.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: ddf:DEFDS_1065 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_004050770.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ddf:DEFDS_1064 branched-chain amino acid ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004050771.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ddf:DEFDS_1063 branched-chain amino acid ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004050772.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828: IPR000709; KEGG: ddf:DEFDS_1062 branched-chain amino acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, substrate-binding protein; PFAM: Receptor family ligand binding region
YP_004050773.1	InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_1061 transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix
YP_004050774.1	COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: ddf:DEFDS_0316 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_004050775.1	InterPro IPR004477; KEGG: dap:Dacet_0044 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein
YP_004050776.1	KEGG: dap:Dacet_0419 hypothetical protein; SPTR: uncharacterized protein
YP_004050777.1	COGs: COG2262 GTPase; InterPro IPR016496: IPR005225: IPR002917: IPR006073; KEGG: ddf:DEFDS_1593 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: GTP-binding proten HflX; small GTP-binding protein; manually curated; PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX; small GTP-binding protein domain
YP_004050778.1	COGs: COG0303 Molybdopterin biosynthesis enzyme; InterPro IPR020817: IPR005110: IPR001453: IPR005111; KEGG: ddf:DEFDS_1594 molybdopterin biosynthesis protein MoeA; PFAM: MoeA domain protein domain I and II; molybdopterin binding domain; MoeA domain protein domain IV; SPTR: Molybdopterin biosynthesis protein MoeA; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain
YP_004050779.1	COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006145: IPR006224; KEGG: ddf:DEFDS_1595 ribosomal large subunit pseudouridine synthase A; PFAM: pseudouridine synthase; SPTR: Ribosomal large subunit pseudouridine synthase A; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_004050780.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492: IPR001029; KEGG: dap:Dacet_0501 flagellin domain protein; PFAM: flagellin domain protein; SPTR: Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_004050781.1	KEGG: dap:Dacet_0502 hypothetical protein; SPTR: uncharacterized protein
YP_004050783.1	COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR020025: IPR003869; KEGG: rhi:NGR_b09450 RkpL, polysaccharide biosynthesis protein UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Polysaccharide biosynthesis protein CapD; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase
YP_004050784.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR020026: IPR000653; KEGG: msi:Msm_1536 pleiotropic regulatory protein DegT (PLP-dependent); PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Pleiotropic regulatory protein DegT (PLP-dependent); TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
YP_004050785.1	COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: msi:Msm_1537 acylneuraminate cytidylyltransferase NeuS; PFAM: acylneuraminate cytidylyltransferase; SPTR: cytidylyltransferase; PFAM: Cytidylyltransferase
YP_004050786.1	InterPro IPR019239; KEGG: tmt:Tmath_2080 protein of unknown function DUF2191; PFAM: Protein of unknown function DUF2191; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2191)
YP_004050787.1	InterPro IPR002716; KEGG: tmt:Tmath_2081 PilT protein domain protein; PFAM: PilT protein domain protein; SPTR: PilT protein domain protein; PFAM: PIN domain
YP_004050788.1	COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase; InterPro IPR020023: IPR007235; KEGG: msi:Msm_1538 CMP-sialic acid synthetase, NeuA; PFAM: Glycosyltransferase 28 domain; SPTR: Glycosyltransferase; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; PFAM: Glycosyltransferase family 28 C-terminal domain; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG
YP_004050789.1	COGs: COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR002480; KEGG: dak:DaAHT2_1993 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: Phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: Class-II DAHP synthetase family
YP_004050790.1	COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; InterPro IPR000873: IPR020845; KEGG: hba:Hbal_2325 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: AMP-binding enzyme
YP_004050791.1	InterPro IPR006342; KEGG: cbk:CLL_A2332 methyltransferase FkbM family; SPTR: methyltransferase FkbM family; TIGRFAM: methyltransferase FkbM family; TIGRFAM: methyltransferase, FkbM family
YP_004050792.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: hba:Hbal_2324 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_004050793.1	KEGG: nmr:Nmar_0143 hypothetical protein; SPTR: uncharacterized protein
YP_004050794.1	COGs: COG4310 Uncharacterized protein with an aminopeptidase-like domain; KEGG: nmr:Nmar_0144 aminoglycoside N3'-acetyltransferase; SPTR: Aminoglycoside N3'-acetyltransferase; PFAM: Domain of unknown function (DUF2172); Aminoglycoside 3-N-acetyltransferase
YP_004050795.1	COGs: COG4310 Uncharacterized protein with an aminopeptidase-like domain; InterPro IPR019232: IPR012353; KEGG: gsu:GSU1966 hypothetical protein; PFAM: Protein of unknown function DUF2172, aminopeptidase-like; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF2172)
YP_004050796.1	COGs: COG1670 acetyltransferase including N-acetylase of ribosomal protein; InterPro IPR020036: IPR000182; KEGG: hpj:jhp0310 flagellar biosynthesis protein; PFAM: GCN5-related N-acetyltransferase; SPTR: FLAGELLAR BIOSYNTHESIS PROTEIN; TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase
YP_004050797.1	COGs: COG2089 Sialic acid synthase; InterPro IPR020030: IPR013132: IPR013974: IPR006190; KEGG: hth:HTH_1538 sialic acid synthase; PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; PRIAM: N-acetylneuraminate synthase; SPTR: Sialic acid synthase; TIGRFAM: pseudaminic acid synthase; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase
YP_004050798.1	COGs: COG2604 conserved hypothetical protein; InterPro IPR002826; KEGG: dap:Dacet_0453 hypothetical protein; PFAM: protein of unknown function DUF115; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF115
YP_004050799.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: swo:Swol_0155 hypothetical protein; PFAM: transposase mutator type; SPTR: Transposase, Mutator family; PFAM: Transposase, Mutator family
YP_004050800.1	COGs: COG1817 conserved hypothetical protein; InterPro IPR007152; KEGG: sdl:Sdel_2214 protein of unknown function DUF354; PFAM: protein of unknown function DUF354; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF354)
YP_004050801.1	COGs: COG0068 Hydrogenase maturation factor; InterPro IPR004421: IPR001792: IPR011125: IPR006070: IPR 017968; KEGG: ddf:DEFDS_1539 Ni-Fe hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; SPTR: Ni-Fe hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF
YP_004050802.1	COGs: COG4123 O-methyltransferase; InterPro IPR003402: IPR002052; KEGG: dap:Dacet_0890 methyltransferase small; PFAM: protein of unknown function Met10; SPTR: Methyltransferase small; PFAM: Methyltransferase small domain
YP_004050803.1	COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003593: IPR003439: IPR017871; KEGG: dap:Dacet_1780 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter
YP_004050804.1	COGs: COG0612 Zn-dependent peptidase; InterPro IPR011765: IPR007863: IPR001431; KEGG: ddf:DEFDS_0496 peptidase M16 family; PFAM: peptidase M16 domain protein; SPTR: Peptidase, M16 family; PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_004050805.1	COGs: COG2902 NAD-specific glutamate dehydrogenase; InterPro IPR007780; KEGG: ddf:DEFDS_1921 NAD-glutamate dehydrogenase; PFAM: NAD-glutamate dehydrogenase; SPTR: NAD-glutamate dehydrogenase; PFAM: Bacterial NAD-glutamate dehydrogenase
YP_004050806.1	COGs: COG0281 Malic enzyme; InterPro IPR012301: IPR012302; KEGG: dap:Dacet_1216 malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein NAD-binding; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating); PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain
YP_004050807.1	InterPro IPR000086; KEGG: ddf:DEFDS_1922 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: NUDIX hydrolase; PFAM: NUDIX domain
YP_004050808.1	KEGG: ddf:DEFDS_1923 hypothetical protein; SPTR: uncharacterized protein
YP_004050809.1	COGs: COG1360 Flagellar motor protein; InterPro IPR006665; KEGG: dba:Dbac_1997 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004050810.1	COGs: COG1291 Flagellar motor component; InterPro IPR000540; KEGG: tye:THEYE_A0813 lateral flagellar motor protein MotA; SPTR: Lateral flagellar motor protein MotA; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: flagellar motor stator protein MotA
YP_004050811.1	COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: ddf:DEFDS_1131 hypothetical protein; PFAM: LemA family protein; SPTR: uncharacterized protein; PFAM: LemA family
YP_004050812.1	COGs: COG4907 membrane protein; InterPro IPR018702; KEGG: ddf:DEFDS_1130 hypothetical protein; PFAM: Protein of unknown function DUF2207, membrane; SPTR: uncharacterized protein; PFAM: Predicted membrane protein (DUF2207)
YP_004050813.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR005793; KEGG: ddf:DEFDS_1129 hypothetical protein; PFAM: formyl transferase domain protein; SPTR: uncharacterized protein; PFAM: Formyl transferase; Formyl transferase, C-terminal domain
YP_004050814.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004050815.1	COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR004636: IPR005814; KEGG: ddf:DEFDS_1629 acetylornithine transaminase; PFAM: aminotransferase class-III; PRIAM: acetylornithine transaminase; SPTR: acetylornithine transaminase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine aminotransferases
YP_004050816.1	COGs: COG0078 Ornithine carbamoyltransferase; InterPro IPR002292: IPR006132: IPR006131: IPR006130; KEGG: ddf:DEFDS_1628 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; PRIAM: Ornithine carbamoyltransferase; SPTR: Ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_004050817.1	COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518: IPR018223; KEGG: ddf:DEFDS_1627 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_004050818.1	COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; InterPro IPR002310: IPR006194; KEGG: ddf:DEFDS_0639 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit
YP_004050819.1	COGs: COG3155 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis; InterPro IPR002818; KEGG: ddf:DEFDS_1436 sigma cross-reacting protein 27A; PFAM: ThiJ/PfpI domain-containing protein; SPTR: Sigma cross-reacting protein 27A; PFAM: DJ-1/PfpI family
YP_004050820.1	COGs: COG1232 Protoporphyrinogen oxidase; InterPro IPR004572: IPR006076; KEGG: ddf:DEFDS_1356 protoporphyrinogen oxidase; PFAM: FAD dependent oxidoreductase; PRIAM: Protoporphyrinogen oxidase; SPTR: Protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: protoporphyrinogen oxidase
YP_004050821.1	KEGG: tye:THEYE_A0347 hypothetical protein; SPTR: uncharacterized protein
YP_004050822.1	COGs: COG0245 2C-methyl-D-erythritol 2 4-cyclodiphosphate synthase; InterPro IPR003526: IPR020555; KEGG: dap:Dacet_2463 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; SPTR: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: YgbB family; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_004050823.1	KEGG: dap:Dacet_0906 hypothetical protein; SPTR: uncharacterized protein
YP_004050824.1	COGs: COG0546 phosphatase; InterPro IPR006439: IPR005834; KEGG: sua:Saut_1020 HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase, subfamily IA, variant 1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004050825.1	COGs: COG2606 conserved hypothetical protein; InterPro IPR004369: IPR007214; KEGG: glo:Glov_2948 YbaK/EbsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: YbaK/ebsC protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein
YP_004050826.1	COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR014816; KEGG: ddf:DEFDS_0605 tRNA (adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit; PRIAM: tRNA (adenine-N(1)-)-methyltransferase; SPTR: tRNA (Adenine-N(1)-)-methyltransferase; PFAM: tRNA methyltransferase complex GCD14 subunit
YP_004050827.1	COGs: COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; InterPro IPR005259: IPR014001: IPR001650: IPR011545: IPR 014021; KEGG: ddf:DEFDS_1551 primosomal replication factor Y; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Primosomal replication factor Y; TIGRFAM: primosomal protein N'; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_004050828.1	COGs: COG2326 conserved hypothetical protein; InterPro IPR005660; KEGG: hch:HCH_05561 hypothetical protein; PFAM: protein of unknown function DUF344; SPTR: uncharacterized protein; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:AMP phosphotransferase
YP_004050829.1	COGs: COG0611 Thiamine monophosphate kinase; InterPro IPR006283: IPR000728: IPR010918; KEGG: dap:Dacet_2993 thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; PRIAM: Thiamine-phosphate kinase; SPTR: Thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein, N-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_004050830.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: dap:Dacet_2992 thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; SPTR: Thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; manually curated; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_004050831.1	COGs: COG0422 Thiamine biosynthesis protein ThiC; InterPro IPR002817; KEGG: ddf:DEFDS_1615 thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; SPTR: Phosphomethylpyrimidine synthase; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_004050832.1	COGs: COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; InterPro IPR004404: IPR000581: IPR020558; KEGG: rpb:RPB_4066 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; PRIAM: Dihydroxy-acid dehydratase; SPTR: Dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_004050833.1	COGs: COG1377 Flagellar biosynthesis pathway component FlhB; InterPro IPR006136: IPR006135; KEGG: ddf:DEFDS_0413 flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; SPTR: Flagellar biosynthetic protein FlhB; TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB
YP_004050834.1	COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR006303: IPR002010; KEGG: ddf:DEFDS_0412 flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; SPTR: Flagellar biosynthetic protein fliR; TIGRFAM: flagellar biosynthetic protein FliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR
YP_004050835.1	COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR012135; KEGG: dap:Dacet_2754 dihydroorotate oxidase; PFAM: dihydroorotate oxidase; SPTR: Dihydroorotate oxidase; PFAM: Dihydroorotate dehydrogenase
YP_004050836.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR000014: IPR000160: IPR001633: IPR013767; KEGG: nis:NIS_0136 hypothetical protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: uncharacterized protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; manually curated; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_004050837.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR003660: IPR004089: IPR004010: IPR004090; KEGG: ddf:DEFDS_0640 hypothetical protein; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; Cache domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: uncharacterized protein; PFAM: HAMP domain; Cache domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050838.1	KEGG: ddf:DEFDS_P172 methyl-accepting chemotaxis protein; SPTR: Methyl-accepting chemotaxis protein
YP_004050839.1	COGs: COG0282 Acetate kinase; InterPro IPR004372: IPR000890; KEGG: ddf:DEFDS_1816 acetate kinase; PFAM: acetate and butyrate kinase; SPTR: Acetate kinase; TIGRFAM: acetate kinase; PFAM: Acetokinase family; TIGRFAM: acetate kinase
YP_004050840.1	COGs: COG0280 Phosphotransacetylase; InterPro IPR004614: IPR002505: IPR012147; KEGG: ddf:DEFDS_1815 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; PRIAM: Phosphate acetyltransferase; SPTR: Phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: Phosphate acetyl/butaryl transferase; TIGRFAM: phosphate acetyltransferase
YP_004050841.1	COGs: COG2905 signal-transduction protein containing cAMP-binding and CBS domains; InterPro IPR000644: IPR000595: IPR005105: IPR018821; KEGG: dap:Dacet_1248 CBS domain and cyclic nucleotide-regulated nucleotidyltransferase; PFAM: protein of unknown function DUF294 nucleotidyltransferase; CBS domain containing protein; cyclic nucleotide-binding; Domain of unknown function DUF294, nucleotidyltransferase substrate-binding; SMART: CBS domain containing protein; SPTR: CBS domain and cyclic nucleotide-regulated nucleotidyltransferase; PFAM: CBS domain; nucleotidyltransferase substrate binding domain; Cyclic nucleotide-binding domain; nucleotidyltransferase DUF294
YP_004050842.1	COGs: COG3162 membrane protein; InterPro IPR007436; KEGG: dap:Dacet_1118 hypothetical protein; PFAM: protein of unknown function DUF485; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF485
YP_004050843.1	COGs: COG4147 symporter; InterPro IPR019900: IPR001734: IPR018212; KEGG: dap:Dacet_1117 SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; SPTR: SSS sodium solute transporter superfamily; TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family
YP_004050844.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR006055: IPR013520; KEGG: ddf:DEFDS_1873 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; SPTR: uncharacterized protein; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004050845.1	COGs: COG0030 Dimethyladenosine transferase (rRNA methylation); InterPro IPR011530: IPR020598: IPR001737: IPR020596; KEGG: ddf:DEFDS_1874 dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase-like; SPTR: Dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_004050846.1	COGs: COG1995 Pyridoxal phosphate biosynthesis protein; InterPro IPR005255; KEGG: ddf:DEFDS_1875 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; PRIAM: 4-hydroxythreonine-4-phosphate dehydrogenase; SPTR: 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase
YP_004050847.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006657; KEGG: ddf:DEFDS_1943 hypothetical protein; PFAM: molydopterin dinucleotide-binding region; SPTR: uncharacterized protein; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain
YP_004050848.1	InterPro IPR002482: IPR008258: IPR018392: IPR000189; KEGG: ddf:DEFDS_1862 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SPTR: Lytic transglycosylase, catalytic; PFAM: Transglycosylase SLT domain; LysM domain
YP_004050849.1	COGs: COG3426 Butyrate kinase; InterPro IPR011245: IPR000890; KEGG: gem:GM21_1109 butyrate kinase; PFAM: acetate and butyrate kinase; SPTR: Butyrate kinase; TIGRFAM: butyrate kinase; PFAM: Acetokinase family; TIGRFAM: butyrate kinase
YP_004050850.1	COGs: COG0280 Phosphotransacetylase; InterPro IPR013096: IPR002505; KEGG: gem:GM21_1110 phosphate butyryltransferase; PFAM: phosphate acetyl/butaryl transferase; Cupin 2 conserved barrel domain protein; PRIAM: Phosphate butyryltransferase; SPTR: Phosphate butyryltransferase; PFAM: Cupin domain; Phosphate acetyl/butaryl transferase
YP_004050851.1	COGs: COG0803 ABC-type metal ion transport system periplasmic component/surface adhesin; InterPro IPR006127: IPR006129: IPR006128; KEGG: pdi:BDI_3081 zinc ABC transporter zinc-binding protein; PFAM: periplasmic solute binding protein; SPTR: zinc ABC transporter zinc-binding protein; PFAM: Periplasmic solute binding protein family
YP_004050852.1	COGs: COG1121 ABC-type Mn/Zn transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: drt:Dret_0026 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter
YP_004050853.1	COGs: COG1108 ABC-type Mn2+/Zn2+ transport systems permease components; InterPro IPR001626; KEGG: dsa:Desal_1081 ABC-3 protein; PFAM: ABC-3 protein; SPTR: ABC-3 protein; PFAM: ABC 3 transport family
YP_004050854.1	COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; KEGG: pmz:HMPREF0659_A7268 hypothetical protein; SPTR: uncharacterized protein; PFAM: Ferric uptake regulator family
YP_004050855.1	COGs: COG0546 phosphatase; InterPro IPR006439: IPR005834; KEGG: ddf:DEFDS_1222 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004050856.1	COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: ddf:DEFDS_1223 N-ethylammeline chlorohydrolase; PFAM: amidohydrolase; SPTR: N-ethylammeline chlorohydrolase; PFAM: Amidohydrolase family
YP_004050857.1	COGs: COG0679 permease; InterPro IPR004776; KEGG: dae:Dtox_1678 auxin efflux carrier; PFAM: Auxin Efflux Carrier; SPTR: Auxin Efflux Carrier; PFAM: Membrane transport protein
YP_004050858.1	COGs: COG1237 Metal-dependent hydrolase of the beta-lactamase superfamily II; KEGG: dap:Dacet_1136 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily
YP_004050859.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545: IPR001789; KEGG: ddf:DEFDS_0276 two-component system, chemotaxis family, response regulator CheV; PFAM: CheW domain protein; response regulator receiver; SMART: response regulator receiver; CheW domain protein; SPTR: Two-component system, chemotaxis family, response regulator CheV; PFAM: CheW-like domain; Response regulator receiver domain
YP_004050860.1	COGs: COG1729 conserved hypothetical protein; InterPro IPR014162: IPR019734: IPR001440: IPR013026; KEGG: ddf:DEFDS_0275 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein; TIGRFAM: tol-pal system protein YbgF; PFAM: Tetratricopeptide repeat; TIGRFAM: tol-pal system protein YbgF
YP_004050861.1	InterPro IPR002482: IPR018392; KEGG: ddf:DEFDS_0274 hypothetical protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: uncharacterized protein; PFAM: LysM domain
YP_004050862.1	COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR001492: IPR001029; KEGG: ddf:DEFDS_2020 flagellin domain protein; PFAM: flagellin domain protein; SPTR: Flagellin domain protein; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_004050863.1	InterPro IPR005186; KEGG: ddf:DEFDS_2019 flagellar protein FlaG; PFAM: flagellar protein FlaG protein; SPTR: Flagellar protein FlaG; PFAM: FlaG protein
YP_004050864.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089: IPR004090; KEGG: tye:THEYE_A0440 methyl-accepting chemotaxis transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis transducer; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_004050865.1	KEGG: dap:Dacet_1785 hypothetical protein; SPTR: uncharacterized protein
YP_004050866.1	COGs: COG2231 Uncharacterized protein related to Endonuclease III; InterPro IPR003265; KEGG: ddf:DEFDS_0818 endonuclease III; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; SPTR: Endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein
YP_004050867.1	COGs: COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase); InterPro IPR003661: IPR003594: IPR004358: IPR005467; KEGG: slt:Slit_1327 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Multi-sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004050868.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: mei:Msip34_2210 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004050869.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR000014: IPR001789: IPR003661: IPR003594: IPR 013767: IPR004358: IPR005467; KEGG: gme:Gmet_1918 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004050870.1	COGs: COG1639 signal transduction protein; InterPro IPR001789: IPR013976; KEGG: csc:Csac_1329 response regulator receiver protein; PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain; HDOD domain
YP_004050871.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: tmt:Tmath_1814 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004050872.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: gme:Gmet_3472 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver domain protein (CheY-like); PFAM: Response regulator receiver domain
YP_004050873.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003594: IPR001789: IPR004358: IPR005467; KEGG: tit:Thit_1844 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator receiver; SPTR: Multi-sensor signal transduction histidine kinase; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box
YP_004050874.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR000014: IPR001610: IPR003594: IPR001789: IPR 013767: IPR004358: IPR005467: IPR000700; KEGG: cts:Ctha_0490 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box
YP_004050875.1	COGs: COG2200 FOG: EAL domain; InterPro IPR000014: IPR000160: IPR001633: IPR013767: IPR 000700; KEGG: ddf:DEFDS_1853 signal transduction sensor histidine kinase/response regulator; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: Signal transduction sensor histidine kinase/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_004050876.1	InterPro IPR003251; KEGG: ddf:DEFDS_0342 rubrerythrin domain protein; PFAM: Rubrerythrin; SPTR: Rubrerythrin domain protein; PFAM: Rubrerythrin
YP_004050877.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: ddf:DEFDS_0343 aminotransferase I and II; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, I and II; PFAM: Aminotransferase class I and II
YP_004050878.1	InterPro IPR019870: IPR001455; KEGG: ddf:DEFDS_0344 hypothetical protein; PFAM: SirA-like domain-containing protein; SPTR: uncharacterized protein; TIGRFAM: selenium metabolism protein YedF; PFAM: DsrE/DsrF-like family; SirA-like protein; TIGRFAM: selenium metabolism protein YedF
YP_004050879.1	COGs: COG0709 Selenophosphate synthase; Contains Selenocysteine; InterPro IPR004536: IPR000728: IPR010918; KEGG: ddf:DEFDS_0345 selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; SPTR: Selenide, water dikinase; TIGRFAM: selenide, water dikinase; manually curated; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: selenium donor protein
YP_004050880.1	InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_0680 transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix
YP_004050881.1	InterPro IPR005503; KEGG: tpd:Teth39_1246 flagellar basal body-associated protein FliL; PFAM: flagellar basal body-associated protein FliL; SPTR: Flagellar basal body-associated protein FliL; PFAM: Flagellar basal body-associated protein FliL
YP_004050882.1	COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase; KEGG: ddf:DEFDS_1625 cytoplasmic chaperone TorD; SPTR: Cytoplasmic chaperone TorD; PFAM: Nitrate reductase delta subunit
YP_004050883.1	KEGG: ddf:DEFDS_1624 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004050884.1	KEGG: ddf:DEFDS_1623 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3373)
YP_004050885.1	COGs: COG4314 lipoprotein involved in nitrous oxide reduction; KEGG: sdl:Sdel_2169 hypothetical protein; SPTR: uncharacterized protein; PFAM: NosL
YP_004050886.1	KEGG: sdl:Sdel_2174 hypothetical protein; SPTR: uncharacterized protein
YP_004050887.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: tdn:Suden_1316 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: ABC transporter, permease protein; PFAM: Predicted permease
YP_004050888.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: sua:Saut_1420 ABC transporter-like protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter; Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ)
YP_004050889.1	KEGG: sua:Saut_1419 hypothetical protein; SPTR: uncharacterized protein
YP_004050890.1	KEGG: dap:Dacet_1548 hypothetical protein; SPTR: uncharacterized protein
YP_004050891.1	COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: ddf:DEFDS_1618 Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: Transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (transcriptional regulator)
YP_004050892.1	COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883; KEGG: dap:Dacet_1538 cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: Cytochrome-c oxidase; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I
YP_004050893.1	COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR003468: IPR003088: IPR009056; KEGG: dap:Dacet_1539 cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; SPTR: Cytochrome c oxidase, cbb3-type, subunit II; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome c; Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II
YP_004050894.1	KEGG: dap:Dacet_1540 hypothetical protein; SPTR: uncharacterized protein
YP_004050895.1	KEGG: ank:AnaeK_1233 hypothetical protein; SPTR: uncharacterized protein; PFAM: Cbb3-type cytochrome oxidase component FixQ
YP_004050896.1	COGs: COG0348 Polyferredoxin; InterPro IPR017900: IPR017896; KEGG: dap:Dacet_1542 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; PFAM: Ubp3 associated protein Bre5; TIGRFAM: cytochrome c oxidase accessory protein FixG
YP_004050897.1	KEGG: dap:Dacet_1543 hypothetical protein; SPTR: uncharacterized protein
YP_004050898.1	InterPro IPR004714; KEGG: hna:Hneap_1052 cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; SPTR: Cytochrome oxidase maturation protein, Cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; manually curated; PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type
YP_004050899.1	COGs: COG2217 Cation transport ATPase; InterPro IPR006403: IPR006416: IPR001757: IPR006121: IPR 008250: IPR005834: IPR018303: IPR000150; KEGG: dap:Dacet_1545 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Heavy metal translocating P-type ATPase; TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; metal-binding domain of cation transport ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_004050900.1	COGs: COG2836 conserved hypothetical protein; KEGG: dap:Dacet_1547 hypothetical protein; SPTR: uncharacterized protein
YP_004050901.1	COGs: COG0013 Alanyl-tRNA synthetase; InterPro IPR002318: IPR018164: IPR012947: IPR003156: IPR 018165; KEGG: ddf:DEFDS_1463 alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; SPTR: Alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_004050902.1	InterPro IPR003615: IPR002711; KEGG: gme:Gmet_0936 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease
YP_004050903.1	COGs: COG1866 Phosphoenolpyruvate carboxykinase (ATP); InterPro IPR001272; KEGG: ddf:DEFDS_1461 phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP); SPTR: Phosphoenolpyruvate carboxykinase [ATP]; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: Phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP)
YP_004050904.1	COGs: COG0059 Ketol-acid reductoisomerase; InterPro IPR013023: IPR013116: IPR000506; KEGG: ddf:DEFDS_1665 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain-containing protein; acetohydroxy acid isomeroreductase; PRIAM: Ketol-acid reductoisomerase; SPTR: Ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_004050905.1	COGs: COG0440 Acetolactate synthase small (regulatory) subunit; InterPro IPR004789: IPR002912: IPR019455; KEGG: ddf:DEFDS_1666 acetolactate synthase small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; SPTR: Acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit
YP_004050906.1	COGs: COG0028 Thiamine pyrophosphate-requiring protein; InterPro IPR012846: IPR012001: IPR012000: IPR011766: IPR 000399; KEGG: ddf:DEFDS_1667 acetolactate synthase large subunit; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; thiamine pyrophosphate central domain-containing protein; SPTR: Acetolactate synthase; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_004050907.1	COGs: COG4277 DNA-binding protein with the Helix-hairpin-helix motif; InterPro IPR003583: IPR007197; KEGG: hya:HY04AAS1_0393 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Helix-hairpin-helix DNA-binding class 1; SPTR: Radical SAM domain protein
YP_004050908.1	KEGG: fnu:FN0953 hypothetical protein; SPTR: uncharacterized protein
YP_004050909.1	COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR003838; KEGG: dvm:DvMF_2954 protein of unknown function DUF214; PFAM: protein of unknown function DUF214; SPTR: uncharacterized protein; PFAM: Predicted permease
YP_004050910.1	COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: pmx:PERMA_1485 macrolide export ATP-binding/permease protein MacB; PFAM: protein of unknown function DUF214; SPTR: Macrolide export ATP-binding/permease protein MacB; PFAM: Predicted permease
YP_004050911.1	COGs: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: saf:SULAZ_0339 VI polysaccharide biosynthesis protein VipA/TviB; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; SPTR: VI polysaccharide biosynthesis protein VipA/tviB; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004050912.1	KEGG: llo:LLO_0838 membrane protein; SPTR: membrane protein
YP_004050913.1	COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR003141: IPR004013; KEGG: ddf:DEFDS_1471 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: uncharacterized protein; PFAM: PHP domain
YP_004050914.1	COGs: COG1950 membrane protein; InterPro IPR007165; KEGG: ddf:DEFDS_0628 hypothetical protein; PFAM: membrane protein of unknown function; SPTR: uncharacterized protein; PFAM: Membrane protein of unknown function
YP_004050915.1	KEGG: ddf:DEFDS_0629 hypothetical protein; SPTR: uncharacterized protein
YP_004050916.1	COGs: COG4517 conserved hypothetical protein; KEGG: ddf:DEFDS_0630 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1820)
YP_004050917.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: ddf:DEFDS_0631 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family
YP_004050918.1	COGs: COG0795 permease; InterPro IPR005495; KEGG: ddf:DEFDS_0632 hypothetical protein; PFAM: permease YjgP/YjgQ family protein; SPTR: uncharacterized protein; PFAM: Predicted permease YjgP/YjgQ family
YP_004050919.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016: IPR006015; KEGG: ddf:DEFDS_0517 universal stress protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004050920.1	COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: ddf:DEFDS_1937 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese domain protein; PFAM: Rhodanese-like domain
YP_004050921.1	COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR018391: IPR019781: IPR011600: IPR 019775: IPR020472: IPR019782: IPR017986; KEGG: ddf:DEFDS_0903 hypothetical protein; PFAM: WD40 repeat, subgroup; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat-containing protein; Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: uncharacterized protein; PFAM: Caspase domain; WD domain, G-beta repeat
YP_004050922.1	COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: mpi:Mpet_1013 proteinase inhibitor I4 serpin; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; SPTR: Non-specific serine/threonine protein kinase; PFAM: Serpin (serine protease inhibitor)
YP_004050923.1	KEGG: gka:GK0718 hypothetical protein; SPTR: uncharacterized protein
YP_004050924.1	KEGG: tye:THEYE_A1911 hypothetical protein; SPTR: uncharacterized protein
YP_004050925.1	COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR019781: IPR011600: IPR019775: IPR 019782: IPR017986; KEGG: ddf:DEFDS_0903 hypothetical protein; PFAM: WD40 repeat, subgroup; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat-containing protein; SPTR: uncharacterized protein; PFAM: Caspase domain; WD domain, G-beta repeat
YP_004050926.1	KEGG: ser:SERP2443 lipoprotein; SPTR: uncharacterized protein
YP_004050927.1	COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: mpi:Mpet_1013 proteinase inhibitor I4 serpin; PFAM: proteinase inhibitor I4 serpin; SMART: proteinase inhibitor I4 serpin; SPTR: Non-specific serine/threonine protein kinase; PFAM: Serpin (serine protease inhibitor)
YP_004050928.1	KEGG: tye:THEYE_A1912 lipoprotein, putative; SPTR: Lipoprotein, putative
YP_004050929.1	KEGG: sul:SYO3AOP1_1414 hypothetical protein; SPTR: uncharacterized protein
YP_004050930.1	KEGG: tye:THEYE_A1910 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2330)
YP_004050931.1	COGs: COG4249 Uncharacterized protein containing caspase domain; InterPro IPR011600; KEGG: tye:THEYE_A1905 polysaccharide deacetylase, putative; PFAM: peptidase C14 caspase catalytic subunit p20; SPTR: Polysaccharide deacetylase, putative; PFAM: Caspase domain
YP_004050932.1	KEGG: tye:THEYE_A1907 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF400
YP_004050933.1	COGs: COG2319 FOG: WD40 repeat; InterPro IPR001680: IPR019781: IPR002372: IPR011600: IPR 019775: IPR019782: IPR017986; KEGG: dma:DMR_25970 hypothetical protein; PFAM: WD40 repeat, subgroup; Pyrrolo-quinoline quinone repeat-containing protein; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat-containing protein; SPTR: Peptidase C14 caspase catalytic subunit p20; PFAM: Caspase domain; WD domain, G-beta repeat
YP_004050934.1	COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddf:DEFDS_0133 peptide/nickel ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Peptide/nickel ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004050935.1	COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: ddf:DEFDS_0132 peptide/nickel ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Peptide/nickel ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004050936.1	COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ddf:DEFDS_0131 peptide/nickel ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 5; SPTR: Peptide/nickel ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_004050937.1	InterPro IPR004692; KEGG: ddf:DEFDS_0130 preprotein translocase subunit G; PFAM: Preprotein translocase SecG subunit; SPTR: Preprotein translocase subunit G; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_004050938.1	COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644; KEGG: ddf:DEFDS_0853 hypothetical protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: uncharacterized protein; PFAM: CBS domain
YP_004050939.1	COGs: COG0365 Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase; InterPro IPR000873; KEGG: dap:Dacet_1247 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: AMP-dependent synthetase and ligase; PFAM: Domain of unknown function (DUF3448); AMP-binding enzyme
YP_004050940.1	InterPro IPR004664; KEGG: dap:Dacet_2283 cyclic nucleotide-binding protein; PFAM: ribonuclease BN; SPTR: Cyclic nucleotide-binding protein; PFAM: Ribonuclease BN-like family
YP_004050941.1	COGs: COG0460 Homoserine dehydrogenase; InterPro IPR005106: IPR001342: IPR002912: IPR016204: IPR 019811; KEGG: ddf:DEFDS_1176 homoserine dehydrogenase; PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; SPTR: Homoserine dehydrogenase; PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase; ACT domain
YP_004050942.1	COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR013371: IPR004456: IPR019304: IPR006124; KEGG: ddf:DEFDS_1177 phosphoglycerate mutase; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: Phosphoglycerate mutase; TIGRFAM: proposed homoserine kinase; phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; proposed homoserine kinase
YP_004050943.1	COGs: COG0527 Aspartokinase; InterPro IPR005260: IPR001341: IPR001048: IPR002912: IPR 018042: IPR001057; KEGG: ddf:DEFDS_1178 aspartate kinase monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; SPTR: Aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase
YP_004050944.1	COGs: COG0119 Isopropylmalate/homocitrate/citramalate synthase; InterPro IPR005675: IPR000891: IPR013709: IPR002034; KEGG: ddf:DEFDS_1179 2-isopropylmalate synthase; PFAM: LeuA allosteric (dimerisation) domain-containing protein; pyruvate carboxyltransferase; SPTR: 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein
YP_004050945.1	COGs: COG0173 Aspartyl-tRNA synthetase; InterPro IPR004524: IPR004365: IPR004364: IPR004115: IPR 002312: IPR006195; KEGG: ddf:DEFDS_1552 aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; SPTR: Aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_004050946.1	COGs: COG0124 Histidyl-tRNA synthetase; InterPro IPR015807: IPR002314: IPR004154: IPR004516: IPR 006195; KEGG: ddf:DEFDS_1553 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; PRIAM: Histidine--tRNA ligase; SPTR: Histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_004050947.1	COGs: COG1102 Cytidylate kinase; KEGG: ddf:DEFDS_1510 hypothetical protein; SPTR: uncharacterized protein
YP_004050948.1	COGs: COG0801 7 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; InterPro IPR000550; KEGG: dap:Dacet_1438 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; SPTR:2-amino-4-hydroxy-6-hydroxymethyldihydropterid inepyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropte ridinepyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_004050949.1	COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterPro IPR013027: IPR004099: IPR000815; KEGG: dap:Dacet_1440 pyridine nucleotide-disulfide oxidoreductase dimerization region; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Pyridine nucleotide-disulfide oxidoreductase dimerization region; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004050950.1	COGs: COG0192 S-adenosylmethionine synthetase; InterPro IPR002133; KEGG: ddf:DEFDS_1515 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; PRIAM: Methionine adenosyltransferase; SPTR: S-adenosylmethionine synthase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, central domain; S-adenosylmethionine synthetase, N-terminal domain; TIGRFAM: S-adenosylmethionine synthetase
YP_004050951.1	KEGG: ddf:DEFDS_1516 hypothetical protein; SPTR: uncharacterized protein
YP_004050952.1	COGs: COG0456 acetyltransferase; InterPro IPR006464: IPR000182; KEGG: ddf:DEFDS_1517 ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Ribosomal-protein-alanine acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase
YP_004050953.1	COGs: COG1214 Inactive homolog of metal-dependent protease molecular chaperone; InterPro IPR000905; KEGG: ddf:DEFDS_1518 glycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; SPTR: Glycoprotein endopeptidase; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ
YP_004050954.1	COGs: COG0432 conserved hypothetical protein; InterPro IPR001602; KEGG: ddf:DEFDS_1845 hypothetical protein; PFAM: protein of unknown function UPF0047; SPTR: uncharacterized protein; PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_004050955.1	COGs: COG2404 phosphohydrolase (DHH superfamily); InterPro IPR003156; KEGG: ddf:DEFDS_1844 hypothetical protein; PFAM: phosphoesterase DHHA1; SPTR: uncharacterized protein; PFAM: DHH family; DHHA1 domain
YP_004050956.1	COGs: COG0218 GTPase; InterPro IPR019987: IPR005225: IPR002917; KEGG: ddf:DEFDS_1843 GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Probable GTP-binding protein engB; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB; small GTP-binding protein domain
YP_004050957.1	COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: ddf:DEFDS_1842 phospholipase D/transphosphatidylase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/transphosphatidylase; PFAM: Polyphosphate kinase; Phospholipase D Active site motif
YP_004050958.1	COGs: COG0506 Proline dehydrogenase; InterPro IPR002872: IPR008219: IPR000215; KEGG: ddf:DEFDS_1068 proline dehydrogenase; PFAM: Proline dehydrogenase; SPTR: Proline dehydrogenase; PFAM: Proline dehydrogenase
YP_004050959.1	COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR005931: IPR015590: IPR016160; KEGG: ddf:DEFDS_1067 1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; SPTR: 1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1
YP_004050960.1	COGs: COG1748 Saccharopine dehydrogenase and related protein; InterPro IPR005097; KEGG: ddf:DEFDS_1287 saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase; SPTR: Saccharopine dehydrogenase; PFAM: Saccharopine dehydrogenase
YP_004050961.1	COGs: COG0019 Diaminopimelate decarboxylase; InterPro IPR005730: IPR000183; KEGG: dap:Dacet_2597 carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; TIGRFAM: carboxynorspermidine decarboxylase
YP_004050962.1	KEGG: dap:Dacet_1115 hypothetical protein; SPTR: uncharacterized protein; PFAM: Nucleoside recognition
YP_004050963.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ddf:DEFDS_0964 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate-CoA ligase; PFAM: AMP-binding enzyme; TIGRFAM: phenylacetate-CoA ligase
YP_004050964.1	COGs: COG4747 ACT domain-containing protein; InterPro IPR002912; KEGG: ddf:DEFDS_0963 hypothetical protein; PFAM: amino acid-binding ACT domain protein; SPTR: uncharacterized protein; PFAM: ACT domain
YP_004050965.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828: IPR000709; KEGG: ddf:DEFDS_0962 branched-chain amino acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, substrate-binding protein; PFAM: Receptor family ligand binding region
YP_004050966.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR001828: IPR000709; KEGG: ddf:DEFDS_0962 branched-chain amino acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, substrate-binding protein; PFAM: Receptor family ligand binding region
YP_004050967.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ddf:DEFDS_0961 branched-chain amino acid ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004050968.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: dap:Dacet_1874 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_004050969.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: dap:Dacet_1873 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_004050970.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: dap:Dacet_1872 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter
YP_004050971.1	COGs: COG1541 Coenzyme F390 synthetase; InterPro IPR000873; KEGG: ddf:DEFDS_0957 phenylacetate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; PRIAM: Phenylacetate--CoA ligase; SPTR: Phenylacetate-CoA ligase; PFAM: AMP-binding enzyme
YP_004050972.1	COGs: COG1896 hydrolase of HD superfamily; InterPro IPR006675: IPR003607: IPR006674; KEGG: ddf:DEFDS_0956 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: uncharacterized protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004050973.1	KEGG: ddf:DEFDS_1232 hypothetical protein; SPTR: uncharacterized protein
YP_004050974.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR011895: IPR002880: IPR019752: IPR019456: IPR 011766: IPR017900: IPR017896; KEGG: ddf:DEFDS_0568 pyruvate:ferredoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; Pyruvate-flavodoxin oxidoreductase, EKR domain; thiamine pyrophosphate TPP-binding domain-containing protein; SPTR: Pyruvate-flavodoxin oxidoreductase; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
YP_004050975.1	COGs: COG0044 Dihydroorotase and related cyclic amidohydrolase; InterPro IPR004722: IPR006680: IPR002195; KEGG: ddf:DEFDS_0840 dihydroorotase; PFAM: amidohydrolase; SPTR: Dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_004050976.1	COGs: COG0540 Aspartate carbamoyltransferase catalytic chain; InterPro IPR002082: IPR006132: IPR006131: IPR006130; KEGG: ddf:DEFDS_0841 aspartate carbamoyltransferase catalytic subunit; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; PRIAM: Aspartate carbamoyltransferase; SPTR: Aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_004050977.1	COGs: COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; InterPro IPR000836; KEGG: ddf:DEFDS_0842 bifunctional pyrimidine biosynthesis protein PyrR; PFAM: phosphoribosyltransferase; PRIAM: Uracil phosphoribosyltransferase; SPTR: Bifunctional pyrimidine biosynthesis protein PyrR; PFAM: Phosphoribosyl transferase domain
YP_004050978.1	KEGG: ddf:DEFDS_1114 hypothetical protein; SPTR: uncharacterized protein
YP_004050979.1	COGs: COG1246 N-acetylglutamate synthase and related acetyltransferase; InterPro IPR000182; KEGG: ddf:DEFDS_1115 amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Amino-acid N-acetyltransferase; PFAM: acetyltransferase (GNAT) family
YP_004050980.1	COGs: COG1186 Protein chain release factor B; InterPro IPR004374: IPR020853: IPR005139: IPR000352; KEGG: ddf:DEFDS_1117 peptide chain release factor RF-2; PFAM: Class I peptide chain release factor; PCRF domain protein; SPTR: Peptide chain release factor 2; TIGRFAM: peptide chain release factor 2; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2
YP_004050981.1	COGs: COG0787 Alanine racemase; InterPro IPR000821: IPR001608: IPR011079: IPR020622; KEGG: ddf:DEFDS_1118 alanine racemase; PFAM: alanine racemase domain protein; PRIAM: Alanine racemase; SPTR: Alanine racemase; TIGRFAM: alanine racemase; PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_004050982.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: ddf:DEFDS_1119 ABC transporter permease; PFAM: protein of unknown function DUF140; SPTR: ABC transporter, permease; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_004050983.1	COGs: COG1127 ABC-type transport system involved in resistance to organic solvents ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_1120 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004050984.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: ddf:DEFDS_1121 ABC transporter substrate-binding protein; PFAM: Mammalian cell entry related domain protein; SPTR: ABC transporter, substrate-binding protein; PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein
YP_004050985.1	COGs: COG2107 periplasmic solute-binding protein; KEGG: ddf:DEFDS_1123 hypothetical protein; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178)
YP_004050986.1	KEGG: ddf:DEFDS_1124 hypothetical protein; SPTR: uncharacterized protein
YP_004050987.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004050988.1	COGs: COG1047 FKBP-type peptidyl-prolyl cis-trans isomerase 2; InterPro IPR001179; KEGG: ddf:DEFDS_0971 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; PFAM: peptidylprolyl isomerase FKBP-type; SPTR: Peptidyl-prolyl cis-trans isomerase; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_004050989.1	COGs: COG0756 dUTPase; InterPro IPR008181: IPR008180; KEGG: ddf:DEFDS_1519 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; PRIAM: dUTP diphosphatase; SPTR: Deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_004050990.1	COGs: COG2105 conserved hypothetical protein; InterPro IPR009288; KEGG: mja:MJ_1514 hypothetical protein; PFAM: AIG2 family protein; SPTR: AIG2 family protein; PFAM: AIG2-like family
YP_004050991.1	COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR020817: IPR005302: IPR001453; KEGG: ddf:DEFDS_0070 hypothetical protein; PFAM: molybdopterin binding domain; MOSC domain containing protein; SPTR: uncharacterized protein; TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: Probable molybdopterin binding domain; MOSC domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_004050992.1	COGs: COG0125 Thymidylate kinase; InterPro IPR018094: IPR000062: IPR018095; KEGG: ddf:DEFDS_0069 dTMP kinase; PFAM: thymidylate kinase; PRIAM: dTMP kinase; SPTR: Thymidylate kinase; TIGRFAM: thymidylate kinase; PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_004050993.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; KEGG: ddf:DEFDS_0068 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: DNA polymerase III, delta' subunit
YP_004050994.1	COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: dap:Dacet_2364 PSP1 domain protein; PFAM: PSP1 domain protein; SPTR: PSP1 domain protein; PFAM: PSP1 C-terminal conserved region
YP_004050995.1	COGs: COG0143 Methionyl-tRNA synthetase; InterPro IPR002304: IPR004495: IPR002547: IPR014758: IPR 015413; KEGG: ddf:DEFDS_0066 methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); t-RNA-binding domain-containing protein; SPTR: Methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_004050996.1	COGs: COG0084 Mg-dependent DNase; InterPro IPR015991: IPR012278: IPR001130: IPR018228; KEGG: dap:Dacet_2362 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: Hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_004050997.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: dap:Dacet_2361 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004050998.1	COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015: IPR006016; KEGG: ddf:DEFDS_1788 universal stress protein; PFAM: UspA domain-containing protein; SPTR: Universal stress protein; PFAM: Universal stress protein family
YP_004050999.1	COGs: COG1942 Uncharacterized protein 4-oxalocrotonate tautomerase homolog; InterPro IPR004370; KEGG: mpd:MCP_1128 4-oxalocrotonate tautomerase; PFAM: 4-oxalocrotonate tautomerase; SPTR: 4-oxalocrotonate tautomerase; PFAM: Tautomerase enzyme; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme
YP_004051000.1	COGs: COG1298 Flagellar biosynthesis pathway component FlhA; InterPro IPR006301: IPR001712; KEGG: ddf:DEFDS_0414 flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; SPTR: Flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA
YP_004051001.1	COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR020006: IPR003593: IPR000897; KEGG: dap:Dacet_2845 flagellar biosynthetic protein FlhF; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; SPTR: Flagellar biosynthetic protein FlhF; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF
YP_004051002.1	COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: dap:Dacet_2846 cobyrinic acid ac-diamide synthase; SPTR: Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004051003.1	KEGG: ddf:DEFDS_0417 hypothetical protein; SPTR: uncharacterized protein
YP_004051004.1	COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterPro IPR014284: IPR012845: IPR000943: IPR007627: IPR 007630; KEGG: dap:Dacet_2848 RNA polymerase, sigma 28 subunit, FliA/WhiG; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; SPTR: RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family
YP_004051005.1	COGs: COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; InterPro IPR001789: IPR000673: IPR008248; KEGG: ddf:DEFDS_0419 chemotaxis-specific methylesterase CheB; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; SPTR: Chemotaxis-specific methylesterase CheB; PFAM: CheB methylesterase; Response regulator receiver domain
YP_004051006.1	COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689: IPR001543; KEGG: ddf:DEFDS_0420 flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM
YP_004051007.1	COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR012826: IPR001172: IPR001543: IPR018130; KEGG: dap:Dacet_2851 flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; SPTR: Flagellar motor switch protein FliN; TIGRFAM: flagellar motor switch protein FliN; manually curated; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_004051008.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789; KEGG: dap:Dacet_2852 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004051009.1	KEGG: ddf:DEFDS_0423 hypothetical protein; SPTR: uncharacterized protein; PFAM: Chemotaxis phosphatase, CheZ
YP_004051010.1	COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterPro IPR008207: IPR003594: IPR002545: IPR001789: IPR 005467: IPR004358: IPR004105; KEGG: ddf:DEFDS_0424 two-component system, chemotaxis family, sensor kinase CheA; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; response regulator receiver; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; response regulator receiver; SPTR: Two-component system, chemotaxis family, sensor kinase CheA; PFAM: CheW-like domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain
YP_004051011.1	KEGG: ddf:DEFDS_0425 hypothetical protein; SPTR: uncharacterized protein
YP_004051012.1	KEGG: dap:Dacet_2855 OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein
YP_004051013.1	KEGG: ddf:DEFDS_0427 hypothetical protein; SPTR: uncharacterized protein
YP_004051014.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR000014: IPR001932: IPR010822; KEGG: ddf:DEFDS_0428 hypothetical protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; PAS domain containing protein; SPTR: uncharacterized protein; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004051015.1	COGs: COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); InterPro IPR003658: IPR002645; KEGG: ddf:DEFDS_0429 anti-sigma factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Anti-sigma factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004051016.1	COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155: IPR021133: IPR002645; KEGG: ddf:DEFDS_0430 hypothetical protein; PFAM: PBS lyase HEAT domain protein repeat-containing protein; SPTR: uncharacterized protein; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_004051017.1	COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: dap:Dacet_2860 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_004051018.1	KEGG: ddf:DEFDS_0432 hypothetical protein; SPTR: uncharacterized protein
YP_004051019.1	KEGG: ddf:DEFDS_0433 hypothetical protein; SPTR: uncharacterized protein; PFAM: PilZ domain
YP_004051020.1	KEGG: ddf:DEFDS_0434 hypothetical protein; SPTR: uncharacterized protein
YP_004051021.1	KEGG: dap:Dacet_2864 hypothetical protein; SPTR: uncharacterized protein
YP_004051022.1	COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR002792: IPR010280; KEGG: ddf:DEFDS_0222 tRNA (uracil-5-)-methyltransferase; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; SPTR: tRNA (Uracil-5-)-methyltransferase; PFAM: tRNA (Uracil-5-)-methyltransferase; TRAM domain; Ribosomal RNA adenine dimethylase
YP_004051023.1	COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: dba:Dbac_1067 protein of unknown function DUF195; PFAM: protein of unknown function DUF195; SPTR: uncharacterized protein; PFAM: RmuC family
YP_004051024.1	COGs: COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; InterPro IPR001310: IPR019808; KEGG: ddf:DEFDS_1906 histidine triad family protein; PFAM: histidine triad (HIT) protein; SPTR: Histidine triad family protein; PFAM: HIT domain
YP_004051025.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR011782: IPR001478: IPR001940: IPR001254; KEGG: gsu:GSU0080 protease DegQ; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Protease Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004051026.1	InterPro IPR007404; KEGG: ddf:DEFDS_1879 hypothetical protein; PFAM: membrane-bound metal-dependent hydrolase; SPTR: uncharacterized protein; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457)
YP_004051027.1	COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR011782: IPR001478: IPR001940: IPR001254; KEGG: ddf:DEFDS_1060 peptidase S1C, Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Peptidase S1C, Do; TIGRFAM: protease Do; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_004051028.1	KEGG: dap:Dacet_1971 sigma E regulatory protein, MucB/RseB; SPTR: sigma E regulatory protein, MucB/RseB
YP_004051029.1	KEGG: ddf:DEFDS_1058 hypothetical protein; SPTR: uncharacterized protein
YP_004051030.1	COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: ddf:DEFDS_1057 DNA-directed RNA polymerase sigma 70 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004051031.1	COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR012827: IPR004089: IPR012312: IPR016131; KEGG: ddf:DEFDS_1545 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; Hemerythrin HHE cation binding domain protein; SMART: chemotaxis sensory transducer; SPTR: Methyl-accepting chemotaxis protein; TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; TIGRFAM: hemerythrin-like metal-binding domain
YP_004051032.1	InterPro IPR019657; KEGG: ddf:DEFDS_1970 hypothetical protein; PFAM: Late competence development protein ComFB; SPTR: uncharacterized protein; PFAM: Late competence development protein ComFB
YP_004051033.1	COGs: COG0240 Glycerol-3-phosphate dehydrogenase; InterPro IPR006168: IPR011128: IPR006109; KEGG: ddf:DEFDS_1969 glycerol-3-phosphate dehydrogenase (NAD(P)+); PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_004051034.1	InterPro IPR013429; KEGG: ddf:DEFDS_1611 hypothetical protein; PFAM: regulatory protein FmdB; SPTR: uncharacterized protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Zinc ribbon domain; TIGRFAM: regulatory protein, FmdB family
YP_004051035.1	COGs: COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; InterPro IPR005786: IPR001544; KEGG: shn:Shewana3_3830 branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; PRIAM: Branched-chain-amino-acid transaminase; SPTR: Branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_004051036.1	COGs: COG1159 GTPase; InterPro IPR005225: IPR005662: IPR003593: IPR004044: IPR 002917; KEGG: ddf:DEFDS_1082 GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; SMART: AAA ATPase; SPTR: GTP-binding protein era homolog; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_004051037.1	COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR000644: IPR002550: IPR005170: IPR018253; KEGG: ddf:DEFDS_1081 magnesium/cobalt efflux protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: Magnesium/cobalt efflux protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_004051038.1	COGs: COG0818 Diacylglycerol kinase; InterPro IPR000326: IPR000829; KEGG: ddf:DEFDS_1080 diacylglycerol kinase; PFAM: diacylglycerol kinase; phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase; PAP2 superfamily
YP_004051039.1	COGs: COG0319 metal-dependent hydrolase; InterPro IPR002036: IPR020549; KEGG: ddf:DEFDS_1079 hypothetical protein; PFAM: protein of unknown function UPF0054; SPTR: metalloprotease DEFDS_1079; PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family
YP_004051040.1	COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR018111: IPR003714; KEGG: ddf:DEFDS_1078 phosphate starvation-induced protein PhoH; PFAM: PhoH family protein; K Homology, type 1, subgroup; SPTR: Phosphate starvation-induced protein PhoH; PFAM: KH domain; PhoH-like protein
YP_004051041.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR000644: IPR001667: IPR003156: IPR002646; KEGG: ddf:DEFDS_1077 polyA polymerase family protein; PFAM: Polynucleotide adenylyltransferase region; CBS domain containing protein; phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SMART: CBS domain containing protein; SPTR: PolyA polymerase family protein; PFAM: DHH family; CBS domain; Poly A polymerase head domain
YP_004051042.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: dap:Dacet_1530 integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_004051043.1	KEGG: mxa:MXAN_5749 hypothetical protein; SPTR: uncharacterized protein
YP_004051044.1	COGs: COG2884 ATPase involved in cell division; InterPro IPR003593: IPR003439: IPR017871: IPR002078; KEGG: ddf:DEFDS_1362 cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Cell division ATP-binding protein FtsE; PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE
YP_004051045.1	COGs: COG2177 Cell division protein; InterPro IPR003838; KEGG: ddf:DEFDS_1363 cell division transport system permease protein; PFAM: protein of unknown function DUF214; SPTR: Cell division transport system permease protein; PFAM: Predicted permease
YP_004051046.1	COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: ddf:DEFDS_1364 hypothetical protein; PFAM: Peptidase M23; SPTR: uncharacterized protein; PFAM: Peptidase family M23
YP_004051047.1	COGs: COG0793 Periplasmic protease; InterPro IPR004447: IPR001478: IPR005151; KEGG: ddf:DEFDS_1365 carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_004051048.1	COGs: COG2861 conserved hypothetical protein; InterPro IPR006837; KEGG: ddf:DEFDS_1366 hypothetical protein; PFAM: protein of unknown function DUF610 YibQ; SPTR: uncharacterized protein; PFAM: Divergent polysaccharide deacetylase
YP_004051049.1	COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017861: IPR000905: IPR017860; KEGG: ddf:DEFDS_1367 O-sialoglycoprotein endopeptidase; PFAM: peptidase M22 glycoprotease; PRIAM: O-sialoglycoprotein endopeptidase; SPTR: O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: Glycoprotease family; TIGRFAM: glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_004051050.1	COGs: COG0042 tRNA-dihydrouridine synthase; InterPro IPR001269; KEGG: ddf:DEFDS_1368 tRNA-dihydrouridine synthase; PFAM: dihydrouridine synthase DuS; SPTR: tRNA-dihydrouridine synthase; PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family
YP_004051051.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR019999: IPR006805: IPR015890; KEGG: dap:Dacet_1172 anthranilate synthase; PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; PRIAM: Anthranilate synthase; SPTR: Anthranilate synthase; PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme
YP_004051052.1	COGs: COG0512 Anthranilate/para-aminobenzoate synthase component II; InterPro IPR006221: IPR017926: IPR006220: IPR011702: IPR 001317: IPR000991; KEGG: ddf:DEFDS_0439 anthranilate synthase component II; PFAM: glutamine amidotransferase class-I; SPTR: Anthranilate synthase component II; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_004051053.1	COGs: COG0547 Anthranilate phosphoribosyltransferase; InterPro IPR005940: IPR017459: IPR000312; KEGG: ddf:DEFDS_0440 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; PRIAM: Anthranilate phosphoribosyltransferase; SPTR: Anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_004051054.1	COGs: COG0134 Indole-3-glycerol phosphate synthase; InterPro IPR013798: IPR001468; KEGG: dap:Dacet_1175 indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase; PRIAM: Indole-3-glycerol-phosphate synthase; SPTR: Indole-3-glycerol-phosphate synthase; PFAM: Indole-3-glycerol phosphate synthase
YP_004051055.1	COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: ddf:DEFDS_0442 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); SPTR: N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_004051056.1	COGs: COG0133 Tryptophan synthase beta chain; InterPro IPR006654: IPR001926: IPR006653; KEGG: ddf:DEFDS_0443 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase, beta subunit; TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_004051057.1	COGs: COG0159 Tryptophan synthase alpha chain; InterPro IPR002028; KEGG: ddf:DEFDS_0444 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; SPTR: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_004051058.1	COGs: COG0442 Prolyl-tRNA synthetase; InterPro IPR004500: IPR006195: IPR002316: IPR002314: IPR 007214: IPR004154; KEGG: ddf:DEFDS_2069 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon-binding domain protein; SPTR: Prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: YbaK / prolyl-tRNA synthetases associated domain; Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II
YP_004051059.1	COGs: COG1092 SAM-dependent methyltransferase; KEGG: dap:Dacet_0735 hypothetical protein; SPTR: uncharacterized protein; PFAM: S-adenosylmethionine-dependent methyltransferase
YP_004051060.1	COGs: COG1049 Aconitase B; InterPro IPR004406: IPR015929: IPR001030: IPR018136; KEGG: ddf:DEFDS_0917 aconitate hydratase; PFAM: Aconitase B; aconitate hydratase domain-containing protein; SPTR: Aconitate hydratase 2; TIGRFAM: aconitate hydratase 2; PFAM: Aconitate B N-terminal domain; Aconitase family (aconitate hydratase); Aconitate hydratase 2 N-terminus; TIGRFAM: aconitate hydratase 2
YP_004051061.1	COGs: COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I N-terminal domain; InterPro IPR004646: IPR004647: IPR011167; KEGG: gbm:Gbem_0889 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; SPTR: Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_004051062.1	COGs: COG0284 Orotidine-5'-phosphate decarboxylase; InterPro IPR014732: IPR001754: IPR018089; KEGG: dap:Dacet_1908 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; PRIAM: Orotidine-5'-phosphate decarboxylase; SPTR: Orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 1
YP_004051063.1	COGs: COG0461 Orotate phosphoribosyltransferase; InterPro IPR006273: IPR000836; KEGG: ddf:DEFDS_0566 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Orotate phosphoribosyltransferase; SPTR: Orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase, Thermus family
YP_004051064.1	COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300; KEGG: dap:Dacet_0437 glycoside hydrolase family 57; PFAM: glycoside hydrolase family 57; SPTR: Glycoside hydrolase family 57; PFAM: Glycosyl hydrolase family 57
YP_004051065.1	COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR005835: IPR001451: IPR005844: IPR005845; KEGG: dap:Dacet_0438 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; SPTR: Nucleotidyl transferase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Nucleotidyl transferase; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004051066.1	COGs: COG0058 Glucan phosphorylase; InterPro IPR011834: IPR000811; KEGG: dap:Dacet_1353 alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; PRIAM: Phosphorylase; SPTR: Alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: Carbohydrate phosphorylase; Protein of unknown function (DUF3417); TIGRFAM: alpha-glucan phosphorylases
YP_004051067.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: ddf:DEFDS_1214 purine-binding chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: Purine-binding chemotaxis protein CheW; PFAM: CheW-like domain
YP_004051068.1	COGs: COG1200 RecG-like helicase; InterPro IPR004609: IPR014001: IPR001650: IPR014021: IPR 011545; KEGG: ddf:DEFDS_1215 ATP-dependent DNA recombinase RecG; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent DNA recombinase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_004051069.1	KEGG: pmx:PERMA_1964 lipoprotein; SPTR: lipoprotein
YP_004051070.1	COGs: COG0136 Aspartate-semialdehyde dehydrogenase; InterPro IPR005986: IPR012080: IPR000534: IPR012280; KEGG: ddf:DEFDS_1418 aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding; PRIAM: Aspartate-semialdehyde dehydrogenase; SPTR: Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase, gamma-proteobacterial; aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_004051071.1	COGs: COG0623 Enoyl-(acyl-carrier-protein); InterPro IPR002347; KEGG: ddf:DEFDS_1807 enoyl-[acyl-carrier protein] reductase (NADH); SPTR: Enoyl-[acyl-carrier protein] reductase (NADH); PFAM: short chain dehydrogenase
YP_004051072.1	COGs: COG1066 ATP-dependent serine protease; InterPro IPR004504: IPR003593: IPR007694; KEGG: ddf:DEFDS_1808 DNA repair protein RadA; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; SPTR: DNA repair protein radA; TIGRFAM: DNA repair protein RadA; PFAM: KaiC; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: DNA repair protein RadA
YP_004051073.1	COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR004605: IPR008823: IPR003593: IPR008824: IPR 003959; KEGG: ddf:DEFDS_1809 Holliday junction DNA helicase RuvB; PFAM: ATPase AAA; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_004051074.1	InterPro IPR017896: IPR017900; KEGG: ddf:DEFDS_0692 hypothetical protein; SPTR: uncharacterized protein
YP_004051075.1	KEGG: ddf:DEFDS_0691 hypothetical protein; SPTR: uncharacterized protein
YP_004051076.1	COGs: COG2078 conserved hypothetical protein; InterPro IPR002733; KEGG: ddf:DEFDS_0690 hypothetical protein; PFAM: AMMECR1 domain protein; SPTR: uncharacterized protein; PFAM: AMMECR1; TIGRFAM: uncharacterized protein, PH0010 family
YP_004051077.1	COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001: IPR001650: IPR014021: IPR014014: IPR 011545: IPR005580: IPR000629; KEGG: ddf:DEFDS_1798 ATP-dependent RNA helicase DEAD/DEAH box family; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_004051078.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: sul:SYO3AOP1_1247 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004051079.1	InterPro IPR007527; KEGG: ddf:DEFDS_1216 hypothetical protein; SPTR: uncharacterized protein
YP_004051080.1	COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR006275: IPR011761: IPR005483: IPR005481: IPR 005479: IPR005480: IPR011607; KEGG: ddf:DEFDS_1217 carbamoylphosphate synthase large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; SPTR: Carbamoylphosphate synthase, large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_004051081.1	COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR017927: IPR012165: IPR001433: IPR019480; KEGG: dap:Dacet_1422 oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; SPTR: Oxidoreductase FAD/NAD(P)-binding domain protein; PFAM: Oxidoreductase FAD-binding domain; Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; Oxidoreductase NAD-binding domain
YP_004051082.1	COGs: COG0167 Dihydroorotate dehydrogenase; InterPro IPR005720: IPR012135: IPR001295; KEGG: dap:Dacet_1421 dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; SPTR: Dihydroorotate dehydrogenase family protein; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase (subfamily 1) family protein
YP_004051083.1	COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665: IPR006664; KEGG: dba:Dbac_0633 OmpA/MotB domain protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA/MotB domain protein; PFAM: OmpA family
YP_004051084.1	KEGG: dat:HRM2_46490 hypothetical protein; SPTR: uncharacterized protein; PFAM: FecR protein
YP_004051085.1	KEGG: ddf:DEFDS_1410 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF400
YP_004051086.1	KEGG: ddf:DEFDS_1413 hypothetical protein; SPTR: uncharacterized protein; PFAM: Curli production assembly/transport component CsgG
YP_004051087.1	COGs: COG1573 Uracil-DNA glycosylase; InterPro IPR005273: IPR005122; KEGG: ddf:DEFDS_1425 uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; SPTR: Uracil-DNA glycosylase; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4
YP_004051088.1	COGs: COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; InterPro IPR005252: IPR003382: IPR007085; KEGG: ddf:DEFDS_1426 P-pantothenate cysteine ligase / P-pantothenoylcysteine decarboxylase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; PRIAM: Phosphopantothenate--cysteine ligase; SPTR: P-pantothenate cysteine ligase / P-pantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_004051089.1	InterPro IPR003716: IPR006110; KEGG: ddf:DEFDS_1427 DNA-directed RNA polymerase omega subunit; PFAM: RNA polymerase Rpb6; SPTR: DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_004051090.1	COGs: COG0194 Guanylate kinase; InterPro IPR017665: IPR008145: IPR008144: IPR020590; KEGG: dap:Dacet_1560 guanylate kinase; PFAM: guanylate kinase; PRIAM: Guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; SPTR: Guanylate kinase; TIGRFAM: guanylate kinase; PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_004051091.1	COGs: COG1561 Uncharacterized stress-induced protein; InterPro IPR005229: IPR013527: IPR013551; KEGG: dap:Dacet_1561 hypothetical protein; PFAM: domain of unknown function DUF1732; YicC-like domain-containing protein; SPTR: uncharacterized protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: conserved hypothetical protein TIGR00255
YP_004051092.1	COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107: IPR001972; KEGG: ddf:DEFDS_1430 hypothetical protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: uncharacterized protein; PFAM: SPFH domain / Band 7 family
YP_004051093.1	COGs: COG3086 Positive regulator of sigma E activity; InterPro IPR007359; KEGG: ddf:DEFDS_0306 hypothetical protein; PFAM: Positive regulator of sigma(E) RseC/MucC; SPTR: uncharacterized protein; PFAM: Positive regulator of sigma(E), RseC/MucC
YP_004051094.1	InterPro IPR007167; KEGG: ddf:DEFDS_0436 ferrous iron transport protein A; PFAM: FeoA family protein; SPTR: Ferrous iron transport protein A; PFAM: FeoA domain
YP_004051095.1	COGs: COG0370 Fe2+ transport system protein B; InterPro IPR005225: IPR003373: IPR006073: IPR002917: IPR 011619: IPR011642: IPR011640; KEGG: ddf:DEFDS_0437 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain-containing protein; nucleoside recognition domain protein; Ferrous iron transport B domain-containing protein; SPTR: Ferrous iron transport protein B; TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain
YP_004051096.1	COGs: COG0281 Malic enzyme; InterPro IPR012188: IPR012301: IPR012302: IPR002505: IPR 001969: IPR015884; KEGG: ddf:DEFDS_1074 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+); PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase; SPTR: Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP+); PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase
YP_004051097.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR001610: IPR003661: IPR003594: IPR 001789: IPR005467: IPR000700: IPR008207: IPR004358: IPR013655; KEGG: sbl:Sbal_3505 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004051098.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160: IPR001789; KEGG: azl:AZL_024270 two-component response regulator, modulated diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; SMART: GGDEF domain containing protein; response regulator receiver; SPTR: GGDEF:Response regulator receiver; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051099.1	COGs: COG2951 Membrane-bound lytic murein transglycosylase B; KEGG: ddf:DEFDS_0819 membrane-bound lytic murein transglycosylase B; SPTR: Membrane-bound lytic murein transglycosylase B
YP_004051100.1	InterPro IPR000271; KEGG: ddf:DEFDS_0346 50S ribosomal protein L34; PFAM: ribosomal protein L34; SPTR: 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type
YP_004051101.1	COGs: COG0759 conserved hypothetical protein; InterPro IPR002696; KEGG: ddf:DEFDS_0348 hypothetical protein; PFAM: protein of unknown function DUF37; SPTR: UPF0161 protein DEFDS_0348; manually curated; PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_004051102.1	COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR019998: IPR020001: IPR001708: IPR013308; KEGG: ddf:DEFDS_0349 preprotein translocase YidC subunit; PFAM: 60 kDa inner membrane insertion protein; SPTR: Preprotein translocase YidC subunit; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_004051103.1	COGs: COG1847 RNA-binding protein; InterPro IPR001374; KEGG: ddf:DEFDS_0350 single-stranded nucleic acid binding protein; PFAM: single-stranded nucleic acid binding R3H domain-containing protein; SMART: single-stranded nucleic acid binding R3H domain-containing protein; SPTR: Single-stranded nucleic acid binding protein; PFAM: R3H domain
YP_004051104.1	InterPro IPR011017: IPR007029; KEGG: ddf:DEFDS_0351 hypothetical protein; PFAM: YHS domain-containing protein; SMART: TRASH domain-containing protein; SPTR: uncharacterized protein; PFAM: YHS domain
YP_004051105.1	COGs: COG0176 Transaldolase; InterPro IPR004731: IPR001585: IPR018225; KEGG: ddf:DEFDS_0352 transaldolase; PFAM: Transaldolase; PRIAM: Transaldolase; SPTR: Transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; TIGRFAM: fructose-6-phosphate aldolase, TalC/MipB family
YP_004051106.1	COGs: COG0778 Nitroreductase; InterPro IPR000415; KEGG: trq:TRQ2_0548 nitroreductase; PFAM: nitroreductase; SPTR: Nitroreductase; PFAM: Nitroreductase family
YP_004051107.1	InterPro IPR000551; KEGG: ddf:DEFDS_1192 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein
YP_004051108.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119: IPR020816; KEGG: dap:Dacet_1204 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Histone family protein DNA-binding protein; PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, alpha subunit
YP_004051109.1	KEGG: ddf:DEFDS_1533 hypothetical protein; SPTR: uncharacterized protein
YP_004051110.1	COGs: COG0480 Translation elongation factors (GTPase); InterPro IPR004540: IPR005225: IPR000795: IPR005517: IPR 000640; KEGG: ddf:DEFDS_1534 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004051111.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014: IPR001638: IPR003661: IPR003594: IPR 005467: IPR004358; KEGG: geo:Geob_3226 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; histidine kinase A domain protein; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: PAS domain S-box
YP_004051112.1	InterPro IPR001911; KEGG: ddf:DEFDS_0196 30S ribosomal protein S21; PFAM: ribosomal protein S21; SPTR: 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_004051113.1	COGs: COG0466 ATP-dependent Lon protease; InterPro IPR004815: IPR003111: IPR003593: IPR001984: IPR 003959: IPR008268; KEGG: ddf:DEFDS_0195 ATP-dependent Lon protease; PFAM: ATPase AAA; peptidase S16 lon domain protein; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_004051114.1	COGs: COG1219 ATP-dependent protease Clp ATPase subunit; InterPro IPR004487: IPR003593: IPR010603: IPR013093: IPR 019489; KEGG: ddf:DEFDS_0194 ATP-dependent Clp protease ATP-binding subunit; PFAM: ATPase AAA-2 domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent Clp protease ATP-binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_004051115.1	COGs: COG0740 Protease subunit of ATP-dependent Clp protease; InterPro IPR001907: IPR018215; KEGG: ddf:DEFDS_0193 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; PRIAM: Endopeptidase Clp; SPTR: ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_004051116.1	COGs: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); InterPro IPR005215: IPR001179: IPR008881: IPR008880; KEGG: ddf:DEFDS_0192 trigger factor; PFAM: trigger factor domain-containing protein; peptidylprolyl isomerase FKBP-type; SPTR: Trigger factor; TIGRFAM: trigger factor; PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor
YP_004051117.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: ddf:DEFDS_1576 heat shock protein Hsp20; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_004051118.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR006638: IPR017200: IPR007197; KEGG: ddf:DEFDS_1457 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004051119.1	COGs: COG0810 Periplasmic protein TonB links inner and outer membranes; InterPro IPR006260; KEGG: ddf:DEFDS_1460 hypothetical protein; PFAM: TonB domain; SPTR: uncharacterized protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004051120.1	InterPro IPR017515: IPR004360; KEGG: ddf:DEFDS_1935 methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Methylmalonyl-CoA epimerase; TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase
YP_004051121.1	COGs: COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); InterPro IPR004413: IPR006075: IPR018027: IPR017958; KEGG: ddf:DEFDS_1934 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B; PFAM: GatB region; Asn/Gln amidotransferase; SPTR: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/GatE catalytic domain; GatB domain; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit
YP_004051122.1	KEGG: ddf:DEFDS_1933 hypothetical protein; SPTR: uncharacterized protein
YP_004051123.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR011814: IPR013216; KEGG: aby:ABAYE3002 biotin biosynthesis protein (BioC); PFAM: Methyltransferase type 11; SPTR: Biotin biosynthesis protein BioC; TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC
YP_004051124.1	COGs: COG2830 conserved hypothetical protein; InterPro IPR007398; KEGG: hap:HAPS_1562 dithiobiotin synthetase; PFAM: protein of unknown function DUF452; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF452)
YP_004051125.1	COGs: COG0156 7-keto-8-aminopelargonate synthetase; InterPro IPR004839: IPR001917; KEGG: bvu:BVU_2780 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; PRIAM: 8-amino-7-oxononanoate synthase; SPTR: 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_004051126.1	COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005815: IPR005814; KEGG: cac:CA_C1362 adenosylmethionine-8-amino-7-oxononanoate aminotranferase; PFAM: aminotransferase class-III; SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotranferase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_004051127.1	COGs: COG1663 Tetraacyldisaccharide-1-P 4'-kinase; InterPro IPR003758; KEGG: ddf:DEFDS_0341 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; PRIAM: Tetraacyldisaccharide 4'-kinase; SPTR: Tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; manually curated; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_004051128.1	KEGG: dap:Dacet_1984 hypothetical protein; SPTR: uncharacterized protein
YP_004051129.1	COGs: COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase; InterPro IPR005854: IPR017932: IPR000583: IPR000836; KEGG: ddf:DEFDS_1603 amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; SPTR: Amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase
YP_004051130.1	COGs: COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase synthetase domain; InterPro IPR010074: IPR000728: IPR010918; KEGG: ddf:DEFDS_1604 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase 2; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase II
YP_004051131.1	COGs: COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase glutamine amidotransferase domain; InterPro IPR010075: IPR017926: IPR011698; KEGG: ddf:DEFDS_1605 phosphoribosylformylglycinamidine synthase large subunit; PFAM: CobB/CobQ domain protein glutamine amidotransferase; PRIAM: Phosphoribosylformylglycinamidine synthase; SPTR: Phosphoribosylformylglycinamidine synthase, large subunit; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: phosphoribosylformylglycinamidine synthase I
YP_004051132.1	COGs: COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase PurS component; InterPro IPR003850; KEGG: ddf:DEFDS_1606 phosphoribosylformylglycinamidine synthase small subunit; PFAM: phosphoribosylformylglycinamidine synthetase PurS; SPTR: Phosphoribosylformylglycinamidine synthase, small subunit; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: Phosphoribosylformylglycinamidine (FGAM) synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS protein
YP_004051133.1	COGs: COG0260 Leucyl aminopeptidase; InterPro IPR000819: IPR008283; KEGG: ddf:DEFDS_2072 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; SPTR: Leucyl aminopeptidase; PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain
YP_004051134.1	KEGG: cyh:Cyan8802_0792 MCP methyltransferase, CheR-type with Tpr repeats; SPTR: MCP methyltransferase, CheR-type with Tpr repeats
YP_004051135.1	InterPro IPR019734: IPR013026: IPR003961; KEGG: tye:THEYE_A1901 tetratricopeptide repeat domain protein; SPTR: Tetratricopeptide repeat domain protein
YP_004051136.1	KEGG: dap:Dacet_0341 hypothetical protein; SPTR: uncharacterized protein
YP_004051137.1	KEGG: ddf:DEFDS_1135 molybdopterin biosynthesis protein MoaE; SPTR: Molybdopterin biosynthesis protein MoaE; PFAM: MoaE protein
YP_004051138.1	COGs: COG1048 Aconitase A; InterPro IPR006249: IPR001030: IPR000573: IPR018136; KEGG: dat:HRM2_10610 AcnA; PFAM: aconitate hydratase domain-containing protein; SPTR: AcnA; TIGRFAM: aconitate hydratase 1; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1
YP_004051139.1	COGs: COG1917 conserved hypothetical protein contains double-stranded beta-helix domain; InterPro IPR013096; KEGG: ddf:DEFDS_1416 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: uncharacterized protein; PFAM: Cupin domain
YP_004051140.1	COGs: COG1651 Protein-disulfide isomerase; KEGG: ddf:DEFDS_1184 hypothetical protein; SPTR: uncharacterized protein
YP_004051141.1	COGs: COG0825 acetyl-CoA carboxylase alpha subunit; InterPro IPR001095: IPR011763: IPR020582: IPR000022; KEGG: ddf:DEFDS_1173 acetyl-CoA carboxylase carboxyl transferase subunit alpha; PFAM: acetyl-CoA carboxylase, alpha subunit, conserved region; carboxyl transferase; SPTR: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_004051142.1	COGs: COG0323 DNA mismatch repair enzyme (predicted ATPase); InterPro IPR014763: IPR020667: IPR003594: IPR013507: IPR 014790: IPR014762; KEGG: ddf:DEFDS_1174 DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; SPTR: DNA mismatch repair protein mutL; TIGRFAM: DNA mismatch repair protein MutL; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_004051143.1	COGs: COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro IPR018022: IPR002627; KEGG: ddf:DEFDS_1175 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; PRIAM: tRNA isopentenyltransferase; SPTR: tRNA dimethylallyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: IPP transferase; TIGRFAM: tRNA isopentenyltransferase (miaA)
YP_004051144.1	InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_0965 transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator; PFAM: Cupin domain; Helix-turn-helix
YP_004051145.1	COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR000119: IPR020816; KEGG: ddf:DEFDS_0966 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: DNA-binding protein HU; PFAM: Bacterial DNA-binding protein
YP_004051146.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: ddf:DEFDS_P121 transposase; PFAM: transposase mutator type; SPTR: Transposase; PFAM: Transposase, Mutator family
YP_004051147.1	COGs: COG1519 3-deoxy-D-manno-octulosonic-acid transferase; InterPro IPR007507; KEGG: cbc:CbuK_2005 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; SPTR: 3-deoxy-D-manno-octulosonic-acid transferase; PFAM: Glycosyl transferases group 1; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_004051148.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: mca:MCA2126 glycosyl transferase, group 1 family protein; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1 family protein; PFAM: Glycosyl transferases group 1
YP_004051149.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: azo:azo2321 lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; SPTR: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_004051150.1	COGs: COG0859 ADP-heptose:LPS heptosyltransferase; InterPro IPR002201; KEGG: nwa:Nwat_0594 glycosyl transferase family 9; PFAM: glycosyl transferase family 9; SPTR: Glycosyl transferase family 9; PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_004051151.1	InterPro IPR007016; KEGG: hin:HI0874 hypothetical protein; PFAM: O-antigen polymerase; SPTR: Possible O-antigen ligase; PFAM: O-Antigen ligase
YP_004051152.1	KEGG: tet:TTHERM_00384860 La domain containing protein; SPTR: Cobalt import ATP-binding protein CbiO 2
YP_004051153.1	COGs: COG0151 Phosphoribosylamine-glycine ligase; InterPro IPR000115: IPR011761: IPR020562: IPR020561: IPR 020560: IPR020559; KEGG: ddf:DEFDS_1188 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; PRIAM: Phosphoribosylamine--glycine ligase; SPTR: Phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_004051154.1	COGs: COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful); InterPro IPR002695: IPR013982: IPR011607; KEGG: ddf:DEFDS_1187 bifunctional purine biosynthesis protein PurH; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; PRIAM: Phosphoribosylaminoimidazolecarboxamide formyltransferase; SMART: AICARFT/IMPCHase bienzyme formylation region; SPTR: Bifunctional purine biosynthesis protein PurH; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_004051155.1	COGs: COG0597 Lipoprotein signal peptidase; InterPro IPR001872; KEGG: ddf:DEFDS_1186 lipoprotein signal peptidase II; PFAM: peptidase A8 signal peptidase II; SPTR: Lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_004051156.1	COGs: COG0060 Isoleucyl-tRNA synthetase; InterPro IPR002301: IPR015905: IPR002300: IPR013155: IPR 010663: IPR001412; KEGG: ddf:DEFDS_1185 isoleucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; SPTR: Isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase
YP_004051157.1	COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: dap:Dacet_2223 ROK family protein; PFAM: ROK family protein; SPTR: ROK family protein; manually curated; PFAM: ROK family
YP_004051158.1	COGs: COG1533 DNA repair photolyase; KEGG: ddf:DEFDS_1338 hypothetical protein; SPTR: uncharacterized protein
YP_004051159.1	KEGG: ddf:DEFDS_1339 hypothetical protein; SPTR: uncharacterized protein
YP_004051160.1	COGs: COG0552 Signal recognition particle GTPase; InterPro IPR004390: IPR003593: IPR013822: IPR000897; KEGG: ddf:DEFDS_1340 signal recognition particle receptor FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; SPTR: Signal recognition particle receptor FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_004051161.1	COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR014016: IPR014017: IPR000212; KEGG: ddf:DEFDS_1949 ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; SPTR: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase
YP_004051162.1	COGs: COG1166 Arginine decarboxylase (spermidine biosynthesis); InterPro IPR002985: IPR000183; KEGG: wsu:WS0554 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; SPTR: Arginine decarboxylase; TIGRFAM: arginine decarboxylase; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic
YP_004051163.1	COGs: COG1414 Transcriptional regulator; InterPro IPR005471: IPR014757; KEGG: ddf:DEFDS_0786 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator
YP_004051164.1	COGs: COG0446 NAD(FAD)-dependent dehydrogenase; InterPro IPR006311: IPR013027: IPR015323; KEGG: dap:Dacet_1681 flavocytochrome c sulphide dehydrogenase flavin-binding protein; PFAM: Flavocytochrome c sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Flavocytochrome c sulphide dehydrogenase flavin-binding protein; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase, flavin-binding; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004051165.1	COGs: COG2863 Cytochrome c553; InterPro IPR009056: IPR003088; KEGG: dap:Dacet_1682 cytochrome c553-like protein; PFAM: cytochrome c class I; SPTR: Cytochrome c553-like protein; PFAM: Cytochrome c
YP_004051166.1	COGs: COG1331 Highly conserved protein containing a thioredoxin domain; KEGG: ddf:DEFDS_1296 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF255
YP_004051167.1	COGs: COG2461 conserved hypothetical protein; KEGG: ddf:DEFDS_0080 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: PAS domain S-box
YP_004051168.1	InterPro IPR000014: IPR013767; KEGG: sti:Sthe_3075 multi-sensor signal transduction histidine kinase; PFAM: PAS fold domain protein; SPTR: Sensory box/GGDEF/EAL family protein; PFAM: PAS fold
YP_004051169.1	COGs: COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; InterPro IPR001228: IPR018294; KEGG: ddf:DEFDS_1001 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; SPTR: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_004051170.1	COGs: COG4956 Integral membrane protein (PIN domain superfamily); InterPro IPR006596: IPR002792: IPR002716; KEGG: ddf:DEFDS_1000 hypothetical protein; PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; SPTR: uncharacterized protein; PFAM: TRAM domain; PIN domain
YP_004051171.1	InterPro IPR003425; KEGG: ddf:DEFDS_0998 hypothetical protein; PFAM: protein of unknown function YGGT; SPTR: uncharacterized protein; PFAM: YGGT family
YP_004051172.1	COGs: COG0325 enzyme with a TIM-barrel fold; InterPro IPR011078: IPR001608; KEGG: ddf:DEFDS_0997 hypothetical protein; PFAM: alanine racemase domain protein; SPTR: uncharacterized protein; PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_004051173.1	COGs: COG1496 conserved hypothetical protein; InterPro IPR003730; KEGG: ddf:DEFDS_0996 hypothetical protein; PFAM: protein of unknown function DUF152; SPTR: uncharacterized protein; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family
YP_004051174.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638: IPR007197; KEGG: ddf:DEFDS_0995 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004051175.1	COGs: COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; InterPro IPR002123; KEGG: dps:DP0336 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; SPTR: Related to 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_004051176.1	COGs: COG3276 Selenocysteine-specific translation elongation factor; InterPro IPR005225: IPR004535: IPR000795: IPR004161; KEGG: ddf:DEFDS_0272 selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; SPTR: Selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: selenocysteine-specific elongation factor SelB; small GTP-binding protein domain; translation elongation factor TU
YP_004051177.1	COGs: COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; InterPro IPR004534: IPR018319; KEGG: ddf:DEFDS_0273 L-seryl-tRNA(Sec) selenium transferase; PFAM: Pyridoxal phosphate-dependent transferase; PRIAM: L-seryl-tRNA(Sec) selenium transferase; SPTR: L-seryl-tRNA(Sec) selenium transferase; TIGRFAM: L-seryl-tRNA selenium transferase; PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase
YP_004051178.1	COGs: COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase; InterPro IPR010168: IPR017439: IPR002933: IPR011650; KEGG: ddf:DEFDS_1806 N-acetyl-L-amino acid amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; PRIAM: N-acetyldiaminopimelate deacetylase; SPTR: N-acetyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: amidohydrolase
YP_004051179.1	COGs: COG0758 Rossmann fold nucleotide-binding protein involved in DNA uptake; InterPro IPR003488; KEGG: ddf:DEFDS_1805 DNA processing protein A; PFAM: SMF family protein; SPTR: DNA processing protein A; TIGRFAM: DNA protecting protein DprA; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_004051180.1	InterPro IPR007456; KEGG: dap:Dacet_0848 hypothetical protein; PFAM: protein of unknown function DUF494; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF494)
YP_004051181.1	COGs: COG0550 Topoisomerase IA; InterPro IPR005733: IPR006154: IPR003601: IPR003602: IPR 000380: IPR006171: IPR013497: IPR013498; KEGG: ddf:DEFDS_1803 DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain-containing protein; DNA topoisomerase type IA zn finger domain protein; PRIAM: DNA topoisomerase; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain-containing protein; SPTR: DNA topoisomerase; TIGRFAM: DNA topoisomerase I; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_004051182.1	COGs: COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation; InterPro IPR004417: IPR013027: IPR002218; KEGG: ddf:DEFDS_1802 glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; PRIAM:Methylenetetrahydrofolate--tRNA-(uracil-5-)-m ethyltransferase(FADH(2)-oxidizing); SPTR:Methylenetetrahydrofolate--tRNA-(uracil-5-)-me thyltransferasetrmFO; TIGRFAM: gid protein; PFAM: Glucose inhibited division protein A; TIGRFAM: tRNA:m(5)U-54 methyltransferase
YP_004051183.1	COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: ddf:DEFDS_1801 tyrosine recombinase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Tyrosine recombinase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerC
YP_004051184.1	COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: cth:Cthe_0250 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family UPF0027
YP_004051185.1	KEGG: tye:THEYE_A1944 lipoprotein, putative; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3617)
YP_004051186.1	InterPro IPR004570: IPR000462; KEGG: pmx:PERMA_1929 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_004051187.1	COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638: IPR013704: IPR020612; KEGG: dat:HRM2_33330 Fe-S oxidoreductase family protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Fe-S oxidoreductase; PFAM: Radical SAM superfamily; Radical SAM N-terminal
YP_004051188.1	InterPro IPR000620; KEGG: ddf:DEFDS_0618 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family
YP_004051189.1	KEGG: ttm:Tthe_0744 alkylmercury lyase; SPTR: alkylmercury lyase; PFAM: Protein of unknown function (DUF2703)
YP_004051190.1	COGs: COG0853 Aspartate 1-decarboxylase; InterPro IPR003190; KEGG: ddf:DEFDS_0845 aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; PRIAM: Aspartate 1-decarboxylase; SPTR: Aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_004051191.1	COGs: COG0414 Panthothenate synthetase; InterPro IPR003721: IPR004821; KEGG: ddf:DEFDS_0844 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; SPTR: Pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain
YP_004051192.1	COGs: COG0413 Ketopantoate hydroxymethyltransferase; InterPro IPR003700; KEGG: ddf:DEFDS_0843 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; PRIAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; SPTR: 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_004051193.1	InterPro IPR001387: IPR013096; KEGG: ddf:DEFDS_1531 XRE family transcriptional regulator; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Cupin domain; Helix-turn-helix
YP_004051194.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: mhu:Mhun_2689 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Cache sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051195.1	COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451; KEGG: dap:Dacet_1433 hypothetical protein; SPTR: uncharacterized protein; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_004051196.1	COGs: COG0148 Enolase; InterPro IPR000941: IPR020811: IPR020810: IPR020809; KEGG: ddf:DEFDS_0201 enolase; PFAM: Enolase-like; PRIAM: Phosphopyruvate hydratase; SPTR: Enolase; TIGRFAM: enolase; PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_004051197.1	InterPro IPR007197; KEGG: ddf:DEFDS_0200 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: uncharacterized protein
YP_004051198.1	KEGG: ddf:DEFDS_0199 hypothetical protein; SPTR: uncharacterized protein
YP_004051199.1	COGs: COG0029 Aspartate oxidase; InterPro IPR005288: IPR013027: IPR003953; KEGG: ddf:DEFDS_0198 L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase
YP_004051200.1	COGs: COG4121 conserved hypothetical protein; InterPro IPR008471; KEGG: ddf:DEFDS_0197 hypothetical protein; PFAM: protein of unknown function DUF752; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF752)
YP_004051201.1	COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: gme:Gmet_3132 hypothetical protein; PFAM: Putitive phosphate transport regulator; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153
YP_004051202.1	COGs: COG0306 Phosphate/sulphate permease; InterPro IPR001204; KEGG: gsu:GSU0389 phosphate transporter, putative; PFAM: phosphate transporter; SPTR: Phosphate transporter, putative; PFAM: Phosphate transporter family
YP_004051203.1	COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006236: IPR006139: IPR006140: IPR002912; KEGG: ddf:DEFDS_0857 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; SPTR: D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase
YP_004051204.1	KEGG: ddf:DEFDS_0761 hypothetical protein; SPTR: uncharacterized protein; PFAM: Curli production assembly/transport component CsgG
YP_004051205.1	COGs: COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; InterPro IPR004588: IPR016425; KEGG: ddf:DEFDS_1800 4-hydroy-3-methylbut-2-en-1-yl diphosphate synthase; PFAM: IspG family protein; SPTR: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_004051206.1	COGs: COG2962 permease; InterPro IPR004626: IPR000620; KEGG: dvm:DvMF_2967 RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; SPTR: RarD protein, DMT superfamily transporter; TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: EamA-like transporter family; TIGRFAM: rarD protein
YP_004051207.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: dap:Dacet_1707 heat shock protein HSP20; PFAM: heat shock protein Hsp20; SPTR: Heat shock protein Hsp20; PFAM: Hsp20/alpha crystallin family
YP_004051208.1	COGs: COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; InterPro IPR012724: IPR001623: IPR001305: IPR003095: IPR 002939: IPR018253; KEGG: ddf:DEFDS_1927 molecular chaperone DnaJ; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; DnaJ central domain protein; SMART: heat shock protein DnaJ domain protein; SPTR: Molecular chaperone DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain (4 repeats); DnaJ domain; DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ
YP_004051209.1	InterPro IPR000551; KEGG: ddf:DEFDS_1926 MerR family transcriptional regulator; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; SPTR: Transcriptional regulator, MerR family; PFAM: MerR family regulatory protein
YP_004051210.1	COGs: COG0542 ATPase with chaperone activity ATP-binding subunit; InterPro IPR017730: IPR003593: IPR001270: IPR004176: IPR 003959: IPR013093: IPR019489: IPR018368; KEGG: ddf:DEFDS_1925 ATP-dependent Clp protease ATP-binding subunit ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; SMART: AAA ATPase; SPTR: ATP-dependent Clp protease, ATP-binding subunit ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_004051211.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR014284: IPR000943: IPR009042: IPR007627: IPR 007624: IPR007630; KEGG: ddf:DEFDS_1924 DNA-directed RNA polymerase sigma 70 factor; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 3 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_004051212.1	COGs: COG1515 Deoxyinosine 3'endonuclease (endonuclease V); InterPro IPR007581: IPR000276; KEGG: ddf:DEFDS_0855 deoxyribonuclease V; PFAM: Endonuclease V; PRIAM: Deoxyribonuclease V; SPTR: Deoxyribonuclease V; PFAM: Endonuclease V
YP_004051213.1	InterPro IPR003856; KEGG: ddf:DEFDS_0398 hypothetical protein; PFAM: lipopolysaccharide biosynthesis protein; SPTR: uncharacterized protein; PFAM: Chain length determinant protein
YP_004051214.1	KEGG: pay:PAU_01741 hypothetical protein; SPTR: uncharacterized protein
YP_004051215.1	COGs: COG1373 ATPase (AAA+ superfamily); KEGG: tye:THEYE_A0178 hypothetical protein; SPTR: uncharacterized protein
YP_004051216.1	InterPro IPR004256; KEGG: ssm:Spirs_0726 ATPase; PFAM: DUF234 DEXX-box ATPase; SPTR: Predicted protein; PFAM: Archaeal ATPase; Archaea bacterial proteins of unknown function
YP_004051217.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: ddf:DEFDS_0384 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4
YP_004051218.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: mma:MM_1141 glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: glycosyltransferase; PFAM: Glycosyl transferase family 2
YP_004051220.1	InterPro IPR001173; KEGG: sdl:Sdel_1773 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004051221.1	InterPro IPR002516; KEGG: sdl:Sdel_1774 glycosyl transferase family 11; PFAM: glycosyl transferase family 11; SPTR: Glycosyl transferase family 11; PFAM: Glycosyl transferase family 11
YP_004051222.1	InterPro IPR005076; KEGG: sdl:Sdel_1775 glycosyltransferase; PFAM: glycosyl transferase family 6; SPTR: glycosyltransferase; PFAM: Glycosyltransferase family 6
YP_004051224.1	KEGG: dba:Dbac_2552 glycosyl transferase family 11; SPTR: Glycosyl transferase family 11
YP_004051225.1	KEGG: lbf:LBF_0316 hydrolase; SPTR: TonB-dependent receptor, plug
YP_004051226.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tel:tll0995 glycosly transferase; PFAM: glycosyl transferase family 2; SPTR: Tll0995 protein; PFAM: Glycosyl transferase family 2
YP_004051227.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: tel:tll0995 glycosly transferase; PFAM: glycosyl transferase family 2; SPTR: Tll0995 protein; PFAM: Glycosyl transferase family 2
YP_004051228.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: slt:Slit_2892 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004051229.1	KEGG: tva:TVAG_282190 hypothetical protein; SPTR: uncharacterized protein
YP_004051230.1	COGs: COG3510 Cephalosporin hydroxylase; KEGG: pat:Patl_3055 cephalosporin hydroxylase; SPTR: Cephalosporin hydroxylase; PFAM: Cephalosporin hydroxylase
YP_004051231.1	KEGG: ppw:PputW619_3714 methyltransferase type 11; SPTR: NDP-hexose methyltransferase protein; PFAM: C-methyltransferase
YP_004051232.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: alv:Alvin_1936 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family
YP_004051233.1	InterPro IPR013630: IPR013217: IPR013691; KEGG: syn:slr1610 hypothetical protein; PFAM: C-methyltransferase; Methyltransferase domain protein; Methyltransferase type 12; SPTR: Slr1610 protein; PFAM: C-methyltransferase; Methyltransferase domain; Hypothetical methyltransferase
YP_004051234.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: acr:Acry_0593 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: DTDP-6-deoxy-L-mannose-dehydrogenase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_004051235.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR013445: IPR001509; KEGG: acr:Acry_0592 CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; manually curated; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: CDP-glucose 4,6-dehydratase
YP_004051236.1	COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterPro IPR013446: IPR005835; KEGG: tye:THEYE_A1515 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate cytidylyltransferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate cytidylyltransferase
YP_004051237.1	KEGG: bpf:BpOF4_06605 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein
YP_004051238.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: nam:NAMH_1667 GDP-L-fucose synthase 1; PFAM: NAD-dependent epimerase/dehydratase; PRIAM: GDP-L-fucose synthase; SPTR: GDP-L-fucose synthase 1; PFAM: NAD dependent epimerase/dehydratase family
YP_004051239.1	InterPro IPR012657; KEGG: ant:Arnit_2573 hypothetical protein; SPTR: uncharacterized protein; PFAM: S23 ribosomal protein; TIGRFAM: conserved hypothetical protein TIGR02436
YP_004051240.1	COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368: IPR001509: IPR020904; KEGG: nam:NAMH_1668 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase
YP_004051241.1	KEGG: ttm:Tthe_2645 protein of unknown function DUF16; SPTR: uncharacterized protein
YP_004051242.1	COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475: IPR003362; KEGG: cpi:Cpin_2376 undecaprenyl-phosphate glucose phosphotransferase; PFAM: sugar transferase; SPTR: Undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_004051243.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ccv:CCV52592_0294 aldehyde dehydrogenase; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004051244.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: dtu:Dtur_0347 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1
YP_004051245.1	KEGG: she:Shewmr4_1324 hypothetical protein; SPTR: Wzy
YP_004051246.1	COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: pab:PAB0795 rhamnosyl transferase related protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004051247.1	InterPro IPR013216; KEGG: dth:DICTH_0152 O-antigen biosynthesis protein; possible glycosyltransferase; possible methyltransferase; PFAM: Methyltransferase type 11; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain
YP_004051248.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: gka:GK3317 O-antigen transporter; PFAM: polysaccharide biosynthesis protein; SPTR: O-antigen transporter; PFAM: Polysaccharide biosynthesis protein
YP_004051249.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: tye:THEYE_A0499 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_004051250.1	InterPro IPR001296; KEGG: bpy:Bphyt_0885 glycosyl transferase family 2; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferases group 1
YP_004051251.1	COGs: COG1088 dTDP-D-glucose 4 6-dehydratase; InterPro IPR005888: IPR001509; KEGG: ssm:Spirs_0682 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_004051252.1	COGs: COG1091 dTDP-4-dehydrorhamnose reductase; InterPro IPR005913; KEGG: bhy:BHWA1_02693 dTDP-4-keto-L-rhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; PRIAM: dTDP-4-dehydrorhamnose reductase; SPTR: dTDP-4-keto-L-rhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; manually curated; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_004051253.1	COGs: COG1898 dTDP-4-dehydrorhamnose 3 5-epimerase; InterPro IPR000888; KEGG: ssm:Spirs_4246 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; PRIAM: dTDP-4-dehydrorhamnose 3,5-epimerase; SPTR: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_004051254.1	COGs: COG1209 dTDP-glucose pyrophosphorylase; InterPro IPR005907: IPR005835; KEGG: tit:Thit_0653 glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; SPTR: Glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_004051255.1	COGs: COG0836 Mannose-1-phosphate guanylyltransferase; InterPro IPR006375: IPR005835: IPR001538; KEGG: nam:NAMH_1670 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; PRIAM: Mannose-1-phosphate guanylyltransferase; SPTR: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_004051256.1	COGs: COG1427 periplasmic solute-binding protein; InterPro IPR003773; KEGG: ddf:DEFDS_1279 hypothetical protein; PFAM: protein of unknown function DUF178; SPTR: uncharacterized protein; PFAM: periplasminc binding protein (DUF178)
YP_004051257.1	COGs: COG1971 membrane protein; InterPro IPR003810; KEGG: ddf:DEFDS_1280 hypothetical protein; PFAM: protein of unknown function DUF204; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF
YP_004051258.1	COGs: COG2985 permease; InterPro IPR006512: IPR006037; KEGG: sdl:Sdel_0018 YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain-containing protein; TrkA-C domain protein; SPTR: YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TrkA-C domain; TIGRFAM: AspT/YidE/YbjL antiporter duplication domain
YP_004051259.1	COGs: COG0345 Pyrroline-5-carboxylate reductase; InterPro IPR000304: IPR004455; KEGG: ddf:DEFDS_1283 pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; PRIAM: Pyrroline-5-carboxylate reductase; SPTR: Pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_004051260.1	COGs: COG1647 Esterase/lipase; KEGG: ddf:DEFDS_1284 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prolyl oligopeptidase family
YP_004051261.1	COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR000835: IPR001367; KEGG: ddf:DEFDS_1285 MntR family transcriptional regulator; PFAM: iron dependent repressor; SMART: iron dependent repressor; regulatory protein MarR; SPTR: Transcriptional regulator, MntR family; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain
YP_004051262.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: ddf:DEFDS_1404 ribonuclease Z; SPTR: Ribonuclease Z
YP_004051263.1	COGs: COG2187 conserved hypothetical protein; KEGG: ddf:DEFDS_1405 hypothetical protein; SPTR: uncharacterized protein
YP_004051264.1	KEGG: pyo:PY02098 hypothetical protein; SPTR: RNA polymerase ECF-type sigma factor
YP_004051265.1	SPTR: uncharacterized protein
YP_004051266.1	KEGG: dap:Dacet_1451 hypothetical protein; SPTR: uncharacterized protein
YP_004051267.1	COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: dap:Dacet_1452 flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: Flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS
YP_004051268.1	COGs: COG1345 Flagellar capping protein; InterPro IPR003481: IPR010810: IPR010809; KEGG: ddf:DEFDS_0581 flagellar hook-associated protein 2; PFAM: flagellar hook-associated 2 domain-containing protein; flagellar hook-associated protein 2 domain-containing protein; flagellin hook IN repeat protein; SPTR: Flagellar hook-associated protein 2; PFAM: Flagellar hook-associated protein 2 C-terminus
YP_004051269.1	COGs: COG0546 phosphatase; InterPro IPR006439: IPR005833: IPR005834; KEGG: ddf:DEFDS_1369 HAD-superfamily hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: HAD-superfamily hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_004051270.1	COGs: COG3884 Acyl-ACP thioesterase; InterPro IPR002864; KEGG: ddf:DEFDS_0026 acyl-acyl carrier protein thioesterase; PFAM: acyl-ACP thioesterase; SPTR: Acyl-acyl carrier protein thioesterase; PFAM: Acyl-ACP thioesterase
YP_004051271.1	COGs: COG0796 Glutamate racemase; InterPro IPR004391: IPR015942: IPR018187; KEGG: saf:SULAZ_1452 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; PRIAM: Glutamate racemase; SPTR: Glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase
YP_004051272.1	KEGG: ddf:DEFDS_0864 hypothetical protein; SPTR: uncharacterized protein
YP_004051273.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: pmx:PERMA_1157 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004051274.1	COGs: COG0491 Zn-dependent hydrolase including glyoxylase; KEGG: ddf:DEFDS_1420 metallo-beta-lactamase family protein; SPTR: Metallo-beta-lactamase family protein; PFAM: Metallo-beta-lactamase superfamily
YP_004051275.1	COGs: COG1490 D-Tyr-tRNAtyr deacylase; InterPro IPR003732; KEGG: ddf:DEFDS_1421 D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; SPTR: D-tyrosyl-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_004051276.1	COGs: COG0728 membrane protein virulence factor; InterPro IPR004268; KEGG: dap:Dacet_1448 integral membrane protein MviN; PFAM: virulence factor MVIN family protein; SPTR: Integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_004051277.1	COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616: IPR008532; KEGG: ddf:DEFDS_0624 fibronectin/fibrinogen-binding protein; PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; SPTR: Fibronectin/fibrinogen-binding protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA)
YP_004051278.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR003593: IPR001482; KEGG: ddf:DEFDS_0625 twitching motility protein PilT; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_004051279.1	InterPro IPR007831; KEGG: ddf:DEFDS_0626 hypothetical protein; PFAM: General secretory system II protein E domain protein; SPTR: uncharacterized protein; PFAM: GSPII_E N-terminal domain
YP_004051280.1	KEGG: ddf:DEFDS_0627 hypothetical protein; SPTR: uncharacterized protein
YP_004051281.1	COGs: COG0847 DNA polymerase III epsilon subunit and related 3'-5' exonuclease; InterPro IPR013520: IPR006054: IPR006055; KEGG: dap:Dacet_1757 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family
YP_004051282.1	KEGG: tye:THEYE_A1898 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF400
YP_004051283.1	COGs: COG1193 Mismatch repair ATPase (MutS family); InterPro IPR002625: IPR000432: IPR005747: IPR007696; KEGG: ddf:DEFDS_1585 DNA mismatch repair protein MutS2; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2; SPTR: DNA mismatch repair protein MutS2; PFAM: MutS domain V; Smr domain; TIGRFAM: MutS2 family protein
YP_004051284.1	InterPro IPR003825; KEGG: ddf:DEFDS_1584 colicin V production protein; PFAM: Colicin V production protein; SPTR: Colicin V production protein; PFAM: Colicin V production protein
YP_004051285.1	COGs: COG1610 conserved hypothetical protein; InterPro IPR019004; KEGG: ddf:DEFDS_1583 hypothetical protein; SPTR: uncharacterized protein; PFAM: Yqey-like protein
YP_004051286.1	COGs: COG2096 conserved hypothetical protein; InterPro IPR002779: IPR017858; KEGG: dap:Dacet_1154 ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP/cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_004051287.1	COGs: COG0205 6-phosphofructokinase; InterPro IPR015912: IPR000023: IPR012003: IPR012828; KEGG: ddf:DEFDS_0940 6-phosphofructokinase; PFAM: phosphofructokinase; SPTR: 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase
YP_004051288.1	COGs: COG0603 PP-loop superfamily ATPase; InterPro IPR018317: IPR004479; KEGG: ddf:DEFDS_0939 ExsB family transcriptional regulator; PFAM: Queuosine synthesis-like; SPTR: Transcriptional regulator, ExsB family; TIGRFAM: exsB protein; PFAM: ExsB; TIGRFAM: exsB protein
YP_004051289.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445: IPR004772; KEGG: ddf:DEFDS_1538 K+ transport (Trk) system membrane component; PFAM: cation transporter; SPTR: K+ transport (Trk) system, membrane component; TIGRFAM: potassium uptake protein, TrkH family; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_004051290.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037: IPR006036; KEGG: dap:Dacet_2986 TrkA-N domain protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: TrkA-N domain protein; PFAM: TrkA-N domain; TrkA-C domain
YP_004051291.1	InterPro IPR018247: IPR003772; KEGG: ddf:DEFDS_0147 hypothetical protein; PFAM: protein of unknown function DUF177; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1399
YP_004051292.1	InterPro IPR002677; KEGG: dap:Dacet_3007 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_004051293.1	COGs: COG0416 Fatty acid/phospholipid biosynthesis enzyme; InterPro IPR003664: IPR012281; KEGG: ddf:DEFDS_0149 fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; SPTR: Phosphate acyltransferase; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX
YP_004051294.1	COGs: COG0332 3-oxoacyl-(acyl-carrier-protein); InterPro IPR013751: IPR013747: IPR004655; KEGG: ddf:DEFDS_0150 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain-containing protein; PRIAM: Beta-ketoacyl-acyl-carrier-protein synthase I; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase 3; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_004051295.1	COGs: COG0331 (acyl-carrier-protein) S-malonyltransferase; InterPro IPR014043: IPR004410; KEGG: ddf:DEFDS_0151 [acyl-carrier-protein] S-malonyltransferase; PFAM: Acyl transferase; SPTR: [acyl-carrier-protein] S-malonyltransferase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_004051296.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198: IPR011284; KEGG: ddf:DEFDS_0152 3-oxoacyl-[acyl-carrier-protein] reductase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-oxoacyl-[acyl-carrier-protein] reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_004051297.1	COGs: COG0236 Acyl carrier protein; InterPro IPR009081: IPR006162: IPR006163: IPR003231; KEGG: glo:Glov_1935 acyl carrier protein; PFAM: phosphopantetheine-binding; SPTR: Acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_004051298.1	COGs: COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; InterPro IPR017441: IPR018201: IPR014030: IPR014031: IPR 017568; KEGG: ddf:DEFDS_0154 3-oxoacyl-[acyl-carrier-protein] synthase II; PFAM: Beta-ketoacyl synthase; SPTR: 3-oxoacyl-[acyl-carrier-protein] synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_004051299.1	COGs: COG0571 dsRNA-specific ribonuclease; InterPro IPR001159: IPR000999: IPR011907; KEGG: ddf:DEFDS_0155 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; PRIAM: Ribonuclease III; SMART: ribonuclease III; double-stranded RNA binding domain protein; SPTR: Ribonuclease III; TIGRFAM: ribonuclease III; PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_004051300.1	COGs: COG1243 Histone acetyltransferase; InterPro IPR007197: IPR006638; KEGG: ddf:DEFDS_0156 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004051301.1	COGs: COG0742 N6-adenine-specific methylase; InterPro IPR002052: IPR004398; KEGG: ddf:DEFDS_0157 DNA methylase; PFAM: Conserved hypothetical protein CHP00095; SPTR: DNA methylase; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_004051302.1	COGs: COG1914 Mn2+ and Fe2+ transporter of the NRAMP family; InterPro IPR001046; KEGG: bth:BT_0629 Mn2+ and Fe2+ transport protein; PFAM: natural resistance-associated macrophage protein; SPTR: uncharacterized protein; PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters
YP_004051303.1	COGs: COG0632 Holliday junction resolvasome DNA-binding subunit; InterPro IPR013849: IPR000445: IPR011114: IPR000085; KEGG: ddf:DEFDS_1659 Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; helix-hairpin-helix motif; RuvA domain protein; SPTR: Holliday junction ATP-dependent DNA helicase ruvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_004051304.1	COGs: COG0817 Holliday junction resolvasome endonuclease subunit; InterPro IPR020563: IPR002176; KEGG: dap:Dacet_0474 crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; PRIAM: Crossover junction endodeoxyribonuclease; SPTR: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_004051305.1	COGs: COG0217 conserved hypothetical protein; InterPro IPR001969: IPR002876; KEGG: ddf:DEFDS_1661 hypothetical protein; PFAM: protein of unknown function DUF28; SPTR: UPF0082 protein DEFDS_1661; PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_004051306.1	COGs: COG1666 conserved hypothetical protein; InterPro IPR007551; KEGG: tjr:TherJR_1429 protein of unknown function DUF520; PFAM: protein of unknown function DUF520; SPTR: UPF0234 protein LW3_0090; PFAM: Protein of unknown function (DUF520)
YP_004051307.1	InterPro IPR013096; KEGG: ddf:DEFDS_2012 hypothetical protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: uncharacterized protein; PFAM: Cupin domain
YP_004051308.1	COGs: COG0105 Nucleoside diphosphate kinase; InterPro IPR001564; KEGG: ddf:DEFDS_0089 nucleoside-diphosphate kinase; PFAM: nucleoside diphosphate kinase; PRIAM: Nucleoside-diphosphate kinase; SMART: nucleoside diphosphate kinase; SPTR: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase
YP_004051309.1	COGs: COG0498 Threonine synthase; InterPro IPR001926: IPR004450; KEGG: ddf:DEFDS_0090 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: Threonine synthase; SPTR: Threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_004051310.1	COGs: COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); InterPro IPR003699; KEGG: ddf:DEFDS_0091 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferas e-isomerase; PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_004051311.1	COGs: COG0343 Queuine/archaeosine tRNA-ribosyltransferase; InterPro IPR002616: IPR004803; KEGG: ddf:DEFDS_0092 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; PRIAM: tRNA-guanine transglycosylase; SPTR: Queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; manually curated; PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_004051312.1	COGs: COG1862 Preprotein translocase subunit YajC; InterPro IPR003849; KEGG: ddf:DEFDS_0093 preprotein translocase subunit YajC; PFAM: YajC family protein; SPTR: Preprotein translocase subunit YajC; TIGRFAM: preprotein translocase, YajC subunit; PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_004051313.1	COGs: COG0342 Preprotein translocase subunit SecD; InterPro IPR001036: IPR003335: IPR005791; KEGG: ddf:DEFDS_0094 preprotein translocase subunit D; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Preprotein translocase subunit D; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family
YP_004051314.1	COGs: COG0341 Preprotein translocase subunit SecF; InterPro IPR003335: IPR005665; KEGG: ddf:DEFDS_0095 preprotein translocase subunit F; PFAM: SecD/SecF/SecDF export membrane protein; SPTR: Preprotein translocase subunit F; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_004051315.1	COGs: COG4786 Flagellar basal body rod protein; InterPro IPR019776: IPR010930: IPR020013; KEGG: ddf:DEFDS_1676 flagellar basal-body rod protein; PFAM: protein of unknown function DUF1078 domain protein; SPTR: Flagellar basal-body rod protein; TIGRFAM: fagellar hook-basal body protein; PFAM: Domain of unknown function (DUF1078); TIGRFAM: fagellar hook-basal body proteins
YP_004051316.1	KEGG: tal:Thal_1067 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF3108)
YP_004051317.1	COGs: COG1584 membrane protein; InterPro IPR000791; KEGG: ddf:DEFDS_0518 hypothetical protein; PFAM: GPR1/FUN34/yaaH family protein; SPTR: uncharacterized protein; PFAM: GPR1/FUN34/yaaH family
YP_004051318.1	COGs: COG0473 Isocitrate/isopropylmalate dehydrogenase; InterPro IPR019818: IPR001804: IPR004429; KEGG: ddf:DEFDS_0681 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; PRIAM: 3-isopropylmalate dehydrogenase; SPTR: 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_004051319.1	InterPro IPR011031; KEGG: dap:Dacet_0428 cytochrome c family protein; SPTR: Cytochrome c family protein
YP_004051320.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR001789: IPR020441: IPR002197: IPR 003593; KEGG: dap:Dacet_0429 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004051321.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003660: IPR004358: IPR003661: IPR 003594; KEGG: dap:Dacet_0430 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051322.1	COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; InterPro IPR003000; KEGG: ddf:DEFDS_1437 Sir2 family transcriptional regulator; PFAM: Silent information regulator protein Sir2; SPTR: Transcriptional regulator, Sir2 family; PFAM: Sir2 family
YP_004051323.1	KEGG: ddf:DEFDS_1440 hypothetical protein; SPTR: uncharacterized protein
YP_004051324.1	COGs: COG0590 Cytosine/adenosine deaminase; InterPro IPR016192: IPR002125; KEGG: ddf:DEFDS_1370 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: CMP/dCMP deaminase, zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_004051325.1	COGs: COG1385 conserved hypothetical protein; InterPro IPR006700; KEGG: dap:Dacet_1187 hypothetical protein; PFAM: protein of unknown function DUF558; SPTR: uncharacterized protein; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_004051326.1	COGs: COG2264 Ribosomal protein L11 methylase; InterPro IPR010456; KEGG: dap:Dacet_1185 ribosomal L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; SPTR: Ribosomal L11 methyltransferase; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_004051327.1	COGs: COG0219 rRNA methylase (SpoU class); InterPro IPR001537: IPR016914; KEGG: ddf:DEFDS_1378 rRNA methylase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: rRNA methylase; PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2
YP_004051328.1	COGs: COG0799 Iojap protein; InterPro IPR004394; KEGG: dap:Dacet_1885 iojap-like protein; PFAM: Iojap-related protein; SPTR: Iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_004051329.1	COGs: COG1057 Nicotinic acid mononucleotide adenylyltransferase; InterPro IPR004820: IPR005248: IPR004821; KEGG: ddf:DEFDS_1381 nicotinate-nucleotide adenylyltransferase; PFAM: cytidylyltransferase; PRIAM: Nicotinate-nucleotide adenylyltransferase; SPTR: Probable nicotinate-nucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; Cytidylyltransferase C-terminal domain (DUF2432); TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_004051330.1	COGs: COG0014 Gamma-glutamyl phosphate reductase; InterPro IPR020593: IPR012134: IPR000965; KEGG: ddf:DEFDS_1382 glutamate-5-semialdehyde dehydrogenase; PRIAM: Glutamate-5-semialdehyde dehydrogenase; SPTR: Gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_004051331.1	COGs: COG0263 Glutamate 5-kinase; InterPro IPR002478: IPR019797: IPR001057: IPR001048: IPR 011529: IPR005715; KEGG: ddf:DEFDS_1383 glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; SPTR: Glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_004051332.1	COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: rsk:RSKD131_3843 polysaccharide deacetylase; PFAM: polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; PFAM: Polysaccharide deacetylase
YP_004051333.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rsk:RSKD131_3842 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1; PFAM: Glycosyl transferases group 1
YP_004051334.1	COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterPro IPR017896: IPR017900: IPR004489; KEGG: ddf:DEFDS_0685 succinate dehydrogenase iron-sulfur protein; PRIAM: Succinate dehydrogenase (ubiquinone); SPTR: Succinate dehydrogenase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_004051335.1	COGs: COG1053 Succinate dehydrogenase/fumarate reductase flavoprotein subunit; InterPro IPR003952: IPR003953: IPR004112: IPR011281: IPR 014006; KEGG: ddf:DEFDS_0686 succinate dehydrogenase flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: Succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
YP_004051336.1	KEGG: ddf:DEFDS_0687 succinate dehydrogenase hydrophobic membrane anchor protein; SPTR: Succinate dehydrogenase, hydrophobic membrane anchor protein
YP_004051337.1	InterPro IPR000701: IPR014314; KEGG: ddf:DEFDS_0688 succinate dehydrogenase cytochrome b subunit; PFAM: succinate dehydrogenase cytochrome b subunit; SPTR: Succinate dehydrogenase, cytochrome b subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit
YP_004051338.1	InterPro IPR004917; KEGG: ttu:TERTU_1314 A-type flagellin; SPTR: A-type flagellin
YP_004051339.1	KEGG: ddf:DEFDS_2024 hypothetical protein; SPTR: uncharacterized protein
YP_004051340.1	InterPro IPR019734: IPR001623: IPR013026; KEGG: ddf:DEFDS_1498 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: DnaJ domain
YP_004051341.1	COGs: COG0483 fructose-1 6-bisphosphatase of inositol monophosphatase family; InterPro IPR020583: IPR020550: IPR000760; KEGG: ddf:DEFDS_1499 inositol-phosphate phosphatase; PFAM: inositol monophosphatase; SPTR: Inositol-phosphate phosphatase; PFAM: Inositol monophosphatase family
YP_004051342.1	COGs: COG1485 ATPase; InterPro IPR005654; KEGG: ddf:DEFDS_1500 hypothetical protein; PFAM: AFG1-family ATPase; SPTR: uncharacterized protein; PFAM: AFG1-like ATPase
YP_004051343.1	COGs: COG0372 Citrate synthase; InterPro IPR019810: IPR002020; KEGG: gsu:GSU1106 type I citrate synthase; PFAM: Citrate synthase; PRIAM: Citrate (Si)-synthase; SPTR: Citrate synthase; PFAM: Citrate synthase; TIGRFAM: citrate (Si)-synthase, eukaryotic
YP_004051344.1	InterPro IPR000620; KEGG: dap:Dacet_1801 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: uncharacterized protein; PFAM: EamA-like transporter family
YP_004051345.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: ddf:DEFDS_2076 enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004051346.1	COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterPro IPR019760: IPR002298: IPR020046: IPR020047: IPR 001098: IPR018320: IPR002421: IPR008918; KEGG: ddf:DEFDS_1967 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: DNA-directed DNA polymerase; 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; SPTR: DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I
YP_004051347.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: ddf:DEFDS_1966 hypothetical protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051348.1	COGs: COG0141 Histidinol dehydrogenase; InterPro IPR001692: IPR012131; KEGG: ddf:DEFDS_1965 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; PRIAM: Histidinol dehydrogenase; SPTR: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_004051349.1	COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: ddf:DEFDS_2125 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_004051350.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: ddf:DEFDS_0972 tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family; PFAM: Fmu (Sun) domain protein; SPTR: tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family; PFAM: NOL1/NOP2/sun family; TIGRFAM: NOL1/NOP2/sun family RNA methylase
YP_004051351.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR001789: IPR000160; KEGG: ddf:DEFDS_0973 signal transduction response regulator; PFAM: GGDEF domain containing protein; response regulator receiver; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; response regulator receiver; SPTR: Signal transduction response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051352.1	COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: ddf:DEFDS_0974 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: uncharacterized protein; manually curated; PFAM: L,D-transpeptidase catalytic domain
YP_004051353.1	KEGG: ddf:DEFDS_0975 hypothetical protein; SPTR: uncharacterized protein
YP_004051354.1	COGs: COG1744 Uncharacterized ABC-type transport system periplasmic component/surface lipoprotein; InterPro IPR003760; KEGG: ddf:DEFDS_0976 hypothetical protein; PFAM: basic membrane lipoprotein; SPTR: uncharacterized protein; PFAM: Basic membrane protein
YP_004051355.1	COGs: COG3845 ABC-type uncharacterized transport systems ATPase components; InterPro IPR003439: IPR017871: IPR003593; KEGG: ddf:DEFDS_0977 sugar ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Sugar ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004051356.1	COGs: COG4603 ABC-type uncharacterized transport system permease component; InterPro IPR001851; KEGG: ddf:DEFDS_0978 sugar ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Sugar ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004051357.1	COGs: COG1079 ABC-type transport system permease component; InterPro IPR001851; KEGG: dap:Dacet_2150 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component
YP_004051358.1	COGs: COG0503 Adenine/guanine phosphoribosyltransferase and related PRPP-binding protein; InterPro IPR000836; KEGG: ddf:DEFDS_0980 xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Xanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: xanthine phosphoribosyltransferase
YP_004051359.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003660: IPR004358: IPR003661: IPR 003594; KEGG: ddf:DEFDS_0982 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SPTR: uncharacterized protein; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051360.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR020904: IPR001173; KEGG: ddf:DEFDS_0983 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Dolichol-phosphate mannosyltransferase; PFAM: Glycosyl transferase family 2
YP_004051361.1	COGs: COG3952 membrane protein; InterPro IPR011499; KEGG: ddf:DEFDS_0984 lipid A biosynthesis domain protein; PFAM: lipid A biosynthesis domain protein; SPTR: Lipid A biosynthesis domain protein; PFAM: Lipid A Biosynthesis N-terminal domain
YP_004051362.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: ddf:DEFDS_0985 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: uncharacterized protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_004051363.1	InterPro IPR000326; KEGG: cli:Clim_0637 phosphoesterase PA-phosphatase related; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; SPTR: Pap2 superfamily protein; PFAM: PAP2 superfamily
YP_004051364.1	COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; InterPro IPR003342; KEGG: dsa:Desal_2867 glycosyl transferase family 39; PFAM: glycosyl transferase family 39; SPTR: Glycosyl transferase family 39; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_004051365.1	KEGG: ddf:DEFDS_0653 hypothetical protein; SPTR: uncharacterized protein
YP_004051366.1	COGs: COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); InterPro IPR004088: IPR003029: IPR000358: IPR001247: IPR 015847: IPR015848: IPR018111: IPR012162: IPR004087; KEGG: ddf:DEFDS_1520 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding; K Homology, type 1, subgroup; RNA binding S1 domain protein; PRIAM: Polyribonucleotide nucleotidyltransferase; SMART: KH domain protein; SPTR: Polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_004051367.1	COGs: COG0184 Ribosomal protein S15P/S13E; InterPro IPR000589: IPR005290; KEGG: ddf:DEFDS_1521 30S ribosomal protein S15; PFAM: ribosomal protein S15; SPTR: 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_004051368.1	COGs: COG0130 Pseudouridine synthase; InterPro IPR002501: IPR014780; KEGG: ddf:DEFDS_1522 tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; SPTR: tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_004051369.1	COGs: COG0858 Ribosome-binding factor A; InterPro IPR000238; KEGG: ddf:DEFDS_1523 ribosome-binding factor A; PFAM: ribosome-binding factor A; SPTR: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_004051370.1	COGs: COG1550 conserved hypothetical protein; InterPro IPR007546; KEGG: ddf:DEFDS_1524 hypothetical protein; PFAM: protein of unknown function DUF503; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF503)
YP_004051371.1	COGs: COG0532 Translation initiation factor 2 (IF-2; GTPase); InterPro IPR006847: IPR000795: IPR004161: IPR000178: IPR 005225; KEGG: ddf:DEFDS_1525 translation initiation factor IF-2; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain-containing protein; elongation factor Tu domain 2 protein; SPTR: Translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_004051372.1	COGs: COG0195 Transcription elongation factor; InterPro IPR004088: IPR003029: IPR013735: IPR018111: IPR 010213: IPR004087; KEGG: ddf:DEFDS_1527 N utilization substance protein A; PFAM: NusA domain-containing protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; SMART: KH domain protein; SPTR: N utilization substance protein A; TIGRFAM: transcription termination factor NusA; PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA
YP_004051373.1	InterPro IPR003728: IPR020790; KEGG: ddf:DEFDS_1528 hypothetical protein; PFAM: protein of unknown function DUF150; SPTR: Ribosome maturation factor rimP; PFAM: Uncharacterised BCR, YhbC family COG0779
YP_004051374.1	COGs: COG0149 Triosephosphate isomerase; InterPro IPR000652: IPR020861; KEGG: ddf:DEFDS_0129 triose-phosphate isomerase; PFAM: triosephosphate isomerase; PRIAM: Triose-phosphate isomerase; SPTR: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_004051375.1	COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: ddf:DEFDS_0128 hypothetical protein; PFAM: protein of unknown function DUF583; SPTR: uncharacterized protein; PFAM: Protein of unknown function, DUF583
YP_004051376.1	COGs: COG1475 transcriptional regulator protein; InterPro IPR006162: IPR003115: IPR004437; KEGG: dap:Dacet_2976 ParB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; SPTR: ParB-like partition protein; TIGRFAM: parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_004051377.1	COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: ddf:DEFDS_0126 chromosome partitioning protein ParA; SPTR: Chromosome partitioning protein ParA; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004051378.1	COGs: COG0313 methyltransferase; InterPro IPR018063: IPR000878: IPR008189; KEGG: ddf:DEFDS_0501 tetrapyrrole methylase family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Tetrapyrrole methylase family protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_004051379.1	COGs: COG0492 Thioredoxin reductase; InterPro IPR008255: IPR000103: IPR013027: IPR005982; KEGG: ddf:DEFDS_0503 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_004051380.1	KEGG: ddf:DEFDS_0505 hypothetical protein; SPTR: uncharacterized protein
YP_004051381.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638: IPR004393; KEGG: ddf:DEFDS_0506 nicotinate-nucleotide pyrophosphorylase carboxylating; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: Nicotinate-nucleotide pyrophosphorylase, carboxylating; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_004051382.1	COGs: COG0525 Valyl-tRNA synthetase; InterPro IPR001412: IPR019754: IPR002300: IPR013155: IPR 019499: IPR002303; KEGG: ddf:DEFDS_0507 valyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase valyl/leucyl anticodon-binding; Valyl-tRNA synthetase, class Ia, tRNA binding arm; SPTR: Valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_004051383.1	KEGG: ddf:DEFDS_0508 hypothetical protein; SPTR: uncharacterized protein
YP_004051384.1	KEGG: dap:Dacet_1740 hypothetical protein; SPTR: uncharacterized protein
YP_004051385.1	COGs: COG0802 ATPase or kinase; InterPro IPR003442; KEGG: dap:Dacet_1739 hypothetical protein; PFAM: Uncharacterised protein family UPF0079, ATPase; SPTR: uncharacterized protein; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_004051386.1	COGs: COG0063 sugar kinase; InterPro IPR000631: IPR004443; KEGG: ddf:DEFDS_0510 hypothetical protein; PFAM: YjeF-family domain-containing protein; protein of unknown function UPF0031; SPTR: uncharacterized protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: Carbohydrate kinase; YjeF-related protein N-terminus; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region
YP_004051387.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR002173: IPR011611: IPR011913; KEGG: ddf:DEFDS_0511 ADP-heptose synthase; PFAM: PfkB domain protein; SPTR: ADP-heptose synthase; TIGRFAM: rfaE bifunctional protein; PFAM: pfkB family carbohydrate kinase; TIGRFAM: rfaE bifunctional protein, domain I
YP_004051388.1	InterPro IPR005651; KEGG: ddf:DEFDS_0512 hypothetical protein; PFAM: protein of unknown function DUF343; SPTR: uncharacterized protein; PFAM: Trm112p-like protein
YP_004051389.1	COGs: COG1242 Fe-S oxidoreductase; InterPro IPR007197: IPR005911: IPR006638; KEGG: ddf:DEFDS_0514 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family
YP_004051390.1	COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: ddf:DEFDS_0515 cardiolipin synthetase; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: Cardiolipin synthetase; PFAM: Phospholipase D Active site motif
YP_004051391.1	InterPro IPR000620; KEGG: ddf:DEFDS_0955 drug/metabolite transporter DME family; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Drug/metabolite transporter, DME family; PFAM: EamA-like transporter family
YP_004051392.1	COGs: COG0292 Ribosomal protein L20; InterPro IPR005813; KEGG: ddf:DEFDS_1501 50S ribosomal protein L20; PFAM: ribosomal protein L20; SPTR: 50S ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_004051393.1	COGs: COG0291 Ribosomal protein L35; InterPro IPR018265: IPR001706: IPR021137; KEGG: ddf:DEFDS_1502 50S ribosomal protein L35; PFAM: Ribosomal protein L35; SPTR: 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_004051394.1	COGs: COG0290 Translation initiation factor 3 (IF-3); InterPro IPR019813: IPR019814: IPR019815: IPR001288; KEGG: ddf:DEFDS_1503 translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; SPTR: Translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; manually curated; PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_004051395.1	COGs: COG0441 Threonyl-tRNA synthetase; InterPro IPR006195: IPR018158: IPR004095: IPR012947: IPR 002314: IPR004154: IPR002320; KEGG: ddf:DEFDS_1504 threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain-containing protein; Anticodon-binding domain protein; SPTR: Threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_004051396.1	COGs: COG1024 Enoyl-CoA hydratase/carnithine racemase; InterPro IPR001753; KEGG: ddf:DEFDS_2078 enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase; SPTR: Enoyl-CoA hydratase/isomerase family protein; PFAM: Enoyl-CoA hydratase/isomerase family
YP_004051397.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sat:SYN_02462 type I secretion outer membrane protein; PFAM: outer membrane efflux protein; SPTR: Type I secretion outer membrane protein; PFAM: Outer membrane efflux protein
YP_004051398.1	COGs: COG0845 Membrane-fusion protein; InterPro IPR006143; KEGG: geo:Geob_2771 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004051399.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: gsu:GSU1611 AcrB/AcrD/AcrF family protein; PFAM: acriflavin resistance protein; SPTR: AcrB/AcrD/AcrF family protein; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_004051400.1	KEGG: clj:CLJU_c09350 hypothetical protein; SPTR: uncharacterized protein
YP_004051401.1	KEGG: gbm:Gbem_0797 hypothetical protein; SPTR: uncharacterized protein
YP_004051402.1	COGs: COG1987 Flagellar biosynthesis pathway component FliQ; InterPro IPR002191: IPR006305; KEGG: ddf:DEFDS_1713 flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; SPTR: Flagellar biosynthetic protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ
YP_004051403.1	COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005838: IPR005837; KEGG: ddf:DEFDS_1714 flagellar transport protein FliP; PFAM: type III secretion system inner membrane P protein; SPTR: Flagellar transport protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP
YP_004051404.1	KEGG: dap:Dacet_0294 hypothetical protein; SPTR: uncharacterized protein
YP_004051405.1	COGs: COG1886 Flagellar motor switch/type III secretory pathway protein; InterPro IPR001172: IPR001543; KEGG: dap:Dacet_0293 surface presentation of antigens (SpoA) protein; PFAM: surface presentation of antigens (SPOA) protein; SPTR: Surface presentation of antigens (SPOA) protein; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_004051406.1	COGs: COG1580 Flagellar basal body-associated protein; InterPro IPR005503; KEGG: ddf:DEFDS_1717 flagellar FliL protein; PFAM: flagellar basal body-associated protein FliL; SPTR: Flagellar FliL protein; PFAM: Flagellar basal body-associated protein FliL
YP_004051407.1	KEGG: ddf:DEFDS_1480 hypothetical protein; SPTR: uncharacterized protein
YP_004051408.1	InterPro IPR019734: IPR013026: IPR001440; KEGG: ddf:DEFDS_1481 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004051409.1	InterPro IPR003661; KEGG: ddf:DEFDS_1482 hypothetical protein; PFAM: histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: His Kinase A (phosphoacceptor) domain
YP_004051410.1	InterPro IPR002156; KEGG: ddf:DEFDS_1483 ribonuclease HI; PFAM: ribonuclease H; SPTR: Ribonuclease HI; PFAM: RNase H
YP_004051411.1	COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: ddf:DEFDS_1484 hypothetical protein; PFAM: protein of unknown function DUF164; SPTR: uncharacterized protein; PFAM: zinc ribbon domain
YP_004051412.1	COGs: COG0327 conserved hypothetical protein; InterPro IPR002678: IPR017221; KEGG: ddf:DEFDS_1485 hypothetical protein; PFAM: protein of unknown function DUF34; SPTR: uncharacterized protein; PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: dinuclear metal center protein, YbgI/SA1388 family
YP_004051413.1	COGs: COG2095 Multiple antibiotic transporter; InterPro IPR002771; KEGG: ant:Arnit_1839 multiple antibiotic resistance (MarC)-related protein; PFAM: multiple antibiotic resistance (MarC)-related protein; SPTR: Multiple antibiotic resistance (MarC)-related protein; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_004051414.1	COGs: COG0082 Chorismate synthase; InterPro IPR020541: IPR000453; KEGG: ddf:DEFDS_0612 chorismate synthase; PFAM: chorismate synthase; PRIAM: Chorismate synthase; SPTR: Chorismate synthase; TIGRFAM: chorismate synthase; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_004051415.1	COGs: COG2041 Sulfite oxidase; InterPro IPR000572; KEGG: dap:Dacet_1832 oxidoreductase molybdopterin binding protein; PFAM: oxidoreductase molybdopterin binding; SPTR: Oxidoreductase molybdopterin binding protein; PFAM: Oxidoreductase molybdopterin binding domain
YP_004051416.1	COGs: COG1993 conserved hypothetical protein; InterPro IPR003793; KEGG: ddf:DEFDS_0610 hypothetical protein; PFAM: protein of unknown function DUF190; SPTR: uncharacterized protein; PFAM: Uncharacterized ACR, COG1993
YP_004051417.1	COGs: COG0239 Integral membrane protein possibly involved in chromosome condensation; InterPro IPR003691; KEGG: dap:Dacet_1834 CrcB protein; PFAM: Camphor resistance CrcB protein; SPTR: Protein crcB homolog; TIGRFAM: CrcB protein; PFAM: CrcB-like protein; TIGRFAM: crcB protein
YP_004051418.1	KEGG: ddf:DEFDS_0608 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004051419.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR016166: IPR006094: IPR004113; KEGG: ddf:DEFDS_1347 glycolate oxidase subunit GlcD; PFAM: FAD linked oxidase domain protein; SPTR: Glycolate oxidase, subunit GlcD; PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_004051420.1	COGs: COG0247 Fe-S oxidoreductase; InterPro IPR017896: IPR017900: IPR004017: IPR012257; KEGG: ddf:DEFDS_1346 glycolate oxidase iron-sulfur subunit GlcF; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Glycolate oxidase, iron-sulfur subunit GlcF; PFAM: Cysteine-rich domain
YP_004051421.1	COGs: COG4663 TRAP-type mannitol/chloroaromatic compound transport system periplasmic component; InterPro IPR018389; KEGG: dat:HRM2_27390 DctP5; PFAM: Extracellular solute-binding protein, family 7; SPTR: Conserved hypothetical extracellular solute-binding protein,family 7; PFAM: Bacterial extracellular solute-binding protein, family 7
YP_004051422.1	COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: dat:HRM2_27400 DctQ5; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: Mannitol transporter; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_004051423.1	COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; InterPro IPR010656: IPR004681; KEGG: dat:HRM2_27410 DctM5; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: DctM5; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_004051424.1	COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR000014: IPR013767: IPR003593; KEGG: slp:Slip_0883 sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; SMART: AAA ATPase; PAS domain containing protein; SPTR: sigma54 specific transcriptional regulator; TIGRFAM: PAS sensor protein; manually curated; PFAM: Sigma-54 interaction domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004051425.1	COGs: COG0183 acetyl-CoA acetyltransferase; InterPro IPR020615: IPR020610: IPR020613: IPR020616: IPR 020617: IPR002155; KEGG: ddf:DEFDS_1837 acetyl-CoA C-acetyltransferase; PFAM: Thiolase-like; PRIAM: acetyl-CoA C-acetyltransferase; SPTR: acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_004051426.1	COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004163: IPR004164: IPR004165: IPR014388: IPR 012792: IPR012791; KEGG: ddf:DEFDS_1919 3-oxoacid CoA-transferase; PFAM: coenzyme A transferase; PRIAM: 3-oxoacid CoA-transferase; SPTR: 3-oxoacid CoA-transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit; PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3-oxoacid CoA-transferase, A subunit
YP_004051427.1	COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198: IPR011294; KEGG: hsm:HSM_0811 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short chain dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase
YP_004051428.1	COGs: COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006218: IPR006268; KEGG: ddf:DEFDS_0830 3-deoxy-7-phosphoheptulonate synthase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004051429.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467: IPR003594; KEGG: geo:Geob_3563 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004051430.1	COGs: COG0824 thioesterase; InterPro IPR013838: IPR006683: IPR006684; KEGG: ddf:DEFDS_1840 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_004051431.1	COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR007730: IPR000064; KEGG: sat:SYN_01486 cell wall-associated hydrolase; PFAM: NLP/P60 protein; Sporulation domain-containing protein; SPTR: Cell wall-associated hydrolase; PFAM: NlpC/P60 family; Sporulation related domain
YP_004051432.1	COGs: COG0349 Ribonuclease D; InterPro IPR002562; KEGG: dsa:Desal_0122 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; SPTR: uncharacterized protein; PFAM: 3'-5' exonuclease
YP_004051433.1	InterPro IPR008258; KEGG: glo:Glov_0964 lytic transglycosylase catalytic; PFAM: Lytic transglycosylase catalytic; SPTR: Lytic transglycosylase catalytic; PFAM: Transglycosylase SLT domain
YP_004051434.1	KEGG: ddf:DEFDS_1229 hypothetical protein; SPTR: uncharacterized protein; PFAM: Phosphorylase superfamily
YP_004051435.1	COGs: COG0685 5 10-methylenetetrahydrofolate reductase; InterPro IPR003171: IPR004620; KEGG: ddf:DEFDS_1143 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; PRIAM: Methylenetetrahydrofolate reductase (NAD(P)H); SPTR: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_004051436.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: ddf:DEFDS_1142 hypothetical protein; PFAM: Lytic transglycosylase catalytic; SPTR: uncharacterized protein; PFAM: Transglycosylase SLT domain
YP_004051437.1	COGs: COG1454 Alcohol dehydrogenase class IV; InterPro IPR001670; KEGG: dap:Dacet_1938 iron-containing alcohol dehydrogenase; PFAM: iron-containing alcohol dehydrogenase; SPTR: Iron-containing alcohol dehydrogenase; PFAM: Iron-containing alcohol dehydrogenase
YP_004051438.1	COGs: COG2309 Leucyl aminopeptidase (aminopeptidase T); InterPro IPR000787; KEGG: ddf:DEFDS_1140 peptidase M29, aminopeptidase II; PFAM: peptidase M29 aminopeptidase II; SPTR: Peptidase M29, aminopeptidase II; PFAM: Thermophilic metalloprotease (M29)
YP_004051439.1	COGs: COG0568 DNA-directed RNA polymerase sigma subunit (sigma70/sigma32); InterPro IPR000943: IPR007127: IPR009042: IPR007627: IPR 007624: IPR007630: IPR014284: IPR012760; KEGG: ddf:DEFDS_1486 DNA-directed RNA polymerase sigma 70 factor; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 factor, region 1.1; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain
YP_004051440.1	COGs: COG0358 DNA primase; InterPro IPR002694: IPR013264: IPR006171: IPR006295: IPR 006154; KEGG: ddf:DEFDS_1487 DNA primase; PFAM: DNA primase catalytic core domain; TOPRIM domain-containing protein; SMART: Toprim sub domain-containing protein; SPTR: DNA primase; TIGRFAM: DNA primase; PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core
YP_004051441.1	COGs: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system ATPase component; InterPro IPR003439: IPR013563: IPR010066: IPR003593; KEGG: ddf:DEFDS_1489 peptide/nickel ABC transporter ATP-binding protein; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: Peptide/nickel ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
YP_004051442.1	COGs: COG0132 Dethiobiotin synthetase; InterPro IPR004472; KEGG: hip:CGSHiEE_05330 dithiobiotin synthetase; SPTR: Dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase
YP_004051443.1	COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR001270: IPR003959: IPR012763: IPR003593; KEGG: ddf:DEFDS_0141 DNA polymerase III gamma/tau subunits; PFAM: ATPase AAA; SMART: AAA ATPase; SPTR: DNA polymerase III, gamma/tau subunits; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau
YP_004051444.1	COGs: COG0718 conserved hypothetical protein; InterPro IPR004401; KEGG: ddf:DEFDS_0142 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; SPTR: UPF0133 protein DEFDS_0142; PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family
YP_004051445.1	COGs: COG0353 Recombinational DNA repair protein (RecF pathway); InterPro IPR015967: IPR006171: IPR000093: IPR006154; KEGG: ddf:DEFDS_0143 DNA recombination protein RecR; PFAM: TOPRIM domain-containing protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain-containing protein; SPTR: DNA recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_004051446.1	InterPro IPR008162: IPR004942; KEGG: ddf:DEFDS_0025 mutual gliding protein B; PFAM: Roadblock/LC7 family protein; SPTR: Mutual gliding protein B; PFAM: Roadblock/LC7 domain
YP_004051447.1	COGs: COG2229 GTPase; InterPro IPR001806; KEGG: ddf:DEFDS_0024 mutual gliding protein A; SPTR: Mutual gliding protein A; PFAM: ADP-ribosylation factor family
YP_004051448.1	COGs: COG1530 Ribonuclease G and E; InterPro IPR003029: IPR019307: IPR004659; KEGG: ddf:DEFDS_0023 ribonuclease E and G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; SPTR: Ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_004051449.1	COGs: COG0293 23S rRNA methylase; InterPro IPR002877: IPR016448; KEGG: ddf:DEFDS_0022 cell division protein methyltransferase FtsJ; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; SPTR: Cell division protein methyltransferase FtsJ; PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ
YP_004051450.1	COGs: COG1691 NCAIR mutase (PurE)-related protein; InterPro IPR000031; KEGG: dap:Dacet_2374 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; manually curated; PFAM: AIR carboxylase
YP_004051451.1	COGs: COG2043 conserved hypothetical protein; InterPro IPR003748; KEGG: ddf:DEFDS_0852 hypothetical protein; PFAM: protein of unknown function DUF169; SPTR: uncharacterized protein; PFAM: Uncharacterised ArCR, COG2043
YP_004051452.1	COGs: COG1109 Phosphomannomutase; InterPro IPR005841: IPR005844: IPR005845: IPR005846: IPR 005843; KEGG: ddf:DEFDS_0735 phosphomannomutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_004051453.1	COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR001633: IPR000160; KEGG: abu:Abu_1554 EAL/GGDEF domain-containing protein; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: EAL/GGDEF domain protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051454.1	KEGG: dap:Dacet_1701 hypothetical protein; SPTR: uncharacterized protein
YP_004051455.1	COGs: COG0648 Endonuclease IV; InterPro IPR001719: IPR018246: IPR012307; KEGG: ddf:DEFDS_1407 endonuclease IV; PFAM: Xylose isomerase domain-containing protein TIM barrel; PRIAM: Deoxyribonuclease IV (phage-T(4)-induced); SMART: AP endonuclease family 2; SPTR: Probable endonuclease 4; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: apurinic endonuclease (APN1)
YP_004051456.1	COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR020548: IPR000146; KEGG: ddf:DEFDS_1408 fructose-bisphosphatase; PFAM: Inositol phosphatase/fructose-16-bisphosphatase; SPTR: Fructose-1,6-bisphosphatase class 1; PFAM: Fructose-1-6-bisphosphatase
YP_004051457.1	COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR000189: IPR008258; KEGG: pmx:PERMA_1958 membrane-bound lytic murein transglycosylase C; PFAM: Lytic transglycosylase catalytic; SPTR: Membrane-bound lytic murein transglycosylase C; PFAM: Transglycosylase SLT domain; Domain of unknown function (DUF3393)
YP_004051458.1	KEGG: pmx:PERMA_1959 lipoprotein; SPTR: lipoprotein
YP_004051459.1	KEGG: pmx:PERMA_1960 lipoprotein; SPTR: lipoprotein
YP_004051460.1	KEGG: dap:Dacet_1760 hypothetical protein; SPTR: uncharacterized protein
YP_004051461.1	KEGG: dap:Dacet_0027 hypothetical protein; SPTR: uncharacterized protein
YP_004051462.1	InterPro IPR006860; KEGG: pmx:PERMA_0987 hypothetical protein; PFAM: FecR protein; SPTR: uncharacterized protein; PFAM: FecR protein
YP_004051463.1	COGs: COG0861 Membrane protein TerC possibly involved in tellurium resistance; InterPro IPR005496; KEGG: gvi:glr4409 hypothetical protein; PFAM: Integral membrane protein TerC; SPTR: Glr4409 protein; PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, TerC family
YP_004051464.1	COGs: COG2206 HD-GYP domain; InterPro IPR006674: IPR006675: IPR003607; KEGG: dap:Dacet_1782 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Domain of unknown function (DUF3391); HD domain; TIGRFAM: uncharacterized domain HDIG
YP_004051465.1	COGs: COG0038 Chloride channel protein EriC; InterPro IPR000644: IPR001807; KEGG: ddf:DEFDS_1871 chloride channel protein, CIC family; PFAM: Cl- channel voltage-gated family protein; CBS domain containing protein; SPTR: Chloride channel protein, CIC family; PFAM: CBS domain; Voltage gated chloride channel
YP_004051466.1	COGs: COG0390 ABC-type uncharacterized transport system permease component; InterPro IPR005226; KEGG: ddf:DEFDS_1870 ABC transporter permease; PFAM: hypothetical protein; SPTR: ABC transporter, permease; PFAM: Uncharacterised protein family (UPF0014); TIGRFAM: conserved hypothetical protein TIGR00245
YP_004051467.1	COGs: COG4619 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: ddf:DEFDS_1869 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004051468.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: ddf:DEFDS_1868 methyltransferase UbiE/COQ5 family; PFAM: Methyltransferase type 11; SPTR: Methyltransferase, UbiE/COQ5 family; PFAM: Methyltransferase domain
YP_004051469.1	COGs: COG2021 Homoserine acetyltransferase; InterPro IPR000073: IPR008220: IPR006296; KEGG: ddf:DEFDS_1867 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; PRIAM: Homoserine O-acetyltransferase; SPTR: Homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_004051470.1	COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR003148: IPR006037; KEGG: ddf:DEFDS_0571 K+ transport (Trk) system NAD-binding component; PFAM: TrkA-N domain protein; TrkA-C domain protein; SPTR: K+ transport (Trk) system, NAD-binding component; PFAM: TrkA-N domain; TrkA-C domain
YP_004051471.1	COGs: COG0168 Trk-type K+ transport systems membrane components; InterPro IPR003445; KEGG: ddf:DEFDS_0570 K+ transport (Trk) system membrane component; PFAM: cation transporter; PRIAM: H(+)-transporting two-sector ATPase; SPTR: K+ transport (Trk) system, membrane component; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family
YP_004051472.1	COGs: COG1373 ATPase (AAA+ superfamily); InterPro IPR020548; KEGG: tye:THEYE_A2038 ATPase; SPTR: ATPase
YP_004051473.1	COGs: COG3943 Virulence protein; KEGG: ddf:DEFDS_0287 death-on-curing family protein; SPTR: Death-on-curing family protein
YP_004051474.1	KEGG: phe:Phep_1796 hypothetical protein; SPTR: uncharacterized protein
YP_004051475.1	InterPro IPR003165; KEGG: phe:Phep_1797 hypothetical protein; PFAM: stem cell self-renewal protein Piwi; SPTR: uncharacterized protein
YP_004051476.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002052: IPR002296: IPR003356: IPR000055; KEGG: cph:Cpha266_0895 N-6 DNA methylase; PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; SPTR: N-6 DNA methylase; PFAM: N-6 DNA Methylase; Type I restriction modification DNA specificity domain
YP_004051477.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014021: IPR007409: IPR006935: IPR014001; KEGG: slt:Slit_1091 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase; SPTR: Type III restriction protein res subunit; PFAM: Type III restriction enzyme, res subunit
YP_004051478.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_1269 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004051479.1	COGs: COG0661 unusual protein kinase; InterPro IPR000719: IPR004147; KEGG: ddf:DEFDS_0407 2-octaprenylphenol hydroxylase; PFAM: ABC-1 domain-containing protein; SPTR: 2-octaprenylphenol hydroxylase; PFAM: Phosphotransferase enzyme family; ABC1 family
YP_004051480.1	COGs: COG0595 hydrolase of the metallo-beta-lactamase superfamily; KEGG: dap:Dacet_2757 beta-lactamase domain protein; SPTR: Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein
YP_004051481.1	COGs: COG1968 Uncharacterized bacitracin resistance protein; InterPro IPR003824; KEGG: ddf:DEFDS_0409 undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; SPTR: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_004051482.1	COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543: IPR018541: IPR003593; KEGG: ddf:DEFDS_0410 DNA segregation ATPase FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_004051483.1	COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR001943: IPR000305: IPR001162: IPR004791; KEGG: dap:Dacet_2332 excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: UvrABC system protein C; TIGRFAM: excinuclease ABC, C subunit; PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_004051484.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904: IPR002347: IPR002198; KEGG: ddf:DEFDS_1320 short-chain dehydrogenase/reductase SDR; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004051485.1	COGs: COG0264 Translation elongation factor Ts; InterPro IPR018101: IPR000449: IPR014039: IPR001816; KEGG: dap:Dacet_2531 translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; SPTR: Elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_004051486.1	COGs: COG0052 Ribosomal protein S2; InterPro IPR018130: IPR001865: IPR005706; KEGG: ddf:DEFDS_0051 30S ribosomal protein S2; PFAM: ribosomal protein S2; SPTR: 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_004051487.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004051488.1	KEGG: ddf:DEFDS_2176 hypothetical protein; SPTR: uncharacterized protein
YP_004051489.1	COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: ddf:DEFDS_2177 hypothetical protein; PFAM: ADP-ribosylation/Crystallin J1; SPTR: uncharacterized protein; PFAM: ADP-ribosylglycohydrolase
YP_004051490.1	COGs: COG1525 Micrococcal nuclease (thermonuclease) homologs; InterPro IPR006021: IPR001579: IPR002071; KEGG: lpa:lpa_00291 hypothetical protein; PFAM: nuclease (SNase domain-containing protein); SMART: nuclease (SNase domain-containing protein); SPTR: uncharacterized protein; PFAM: Staphylococcal nuclease homologue
YP_004051491.1	COGs: COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component); InterPro IPR000121: IPR006318: IPR008731: IPR008279; KEGG: ddf:DEFDS_1054 PTS system transporter enzyme I; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; SPTR: PTS system, enzyme I, phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase
YP_004051492.1	COGs: COG1925 Phosphotransferase system HPr-related protein; InterPro IPR000032: IPR001020: IPR005698; KEGG: ddf:DEFDS_1053 PTS system transporter histidine-containing phosphocarrier protein HPr; PFAM: phosphoryl transfer system HPr; SPTR: PTS system, histidine-containing phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family
YP_004051493.1	COGs: COG3716 Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IID; InterPro IPR004704; KEGG: ddf:DEFDS_1052 hypothetical protein; PFAM: PTS system mannose/fructose/sorbose family IID component; SPTR: uncharacterized protein; PFAM: PTS system mannose/fructose/sorbose family IID component
YP_004051494.1	KEGG: dap:Dacet_1316 hypothetical protein; SPTR: uncharacterized protein
YP_004051495.1	COGs: COG3444 Phosphotransferase system mannose/fructose/N-acetylgalactosamine-specific component IIB; InterPro IPR004720; KEGG: ddf:DEFDS_1050 PTS system fructose-specific transporter subunit IIB; PFAM: PTS system sorbose subfamily IIB component; SPTR: PTS system, fructose-specific enzyme II, B component; PFAM: PTS system sorbose subfamily IIB component
YP_004051496.1	COGs: COG2893 Phosphotransferase system mannose/fructose-specific component IIA; InterPro IPR004701; KEGG: dap:Dacet_1314 PTS system fructose subfamily IIA component; PFAM: PTS system fructose subfamily IIA component; SPTR: PTS system fructose subfamily IIA component; PFAM: PTS system fructose IIA component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA component
YP_004051497.1	COGs: COG1660 P-loop-containing kinase; InterPro IPR005337; KEGG: ddf:DEFDS_1048 hypothetical protein; SPTR: UPF0042 nucleotide-binding protein DEFDS_1048; PFAM: P-loop ATPase protein family
YP_004051498.1	COGs: COG1493 Serine kinase of the HPr protein regulates carbohydrate metabolism; InterPro IPR011126: IPR011104: IPR003755; KEGG: ddf:DEFDS_1047 HPr kinase; PFAM: HPr serine kinase domain-containing protein; SPTR: HPr kinase; TIGRFAM: HPr(Ser) kinase/phosphatase; PFAM: HPr Serine kinase N terminus; HPr Serine kinase C-terminal domain; TIGRFAM: Hpr(Ser) kinase/phosphatase
YP_004051499.1	COGs: COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); InterPro IPR002178; KEGG: ddf:DEFDS_1046 PTS system fructose-specific transporter subunit IIA; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: PTS system, fructose-specific enzyme II, A component; PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_004051500.1	COGs: COG1544 Ribosome-associated protein Y (PSrp-1); InterPro IPR003489; KEGG: ddf:DEFDS_1045 sigma 54 modulation protein/ribosomal protein S30EA; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; SPTR: Sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_004051501.1	COGs: COG1508 DNA-directed RNA polymerase specialized sigma subunit sigma54 homolog; InterPro IPR000394: IPR007046: IPR007634; KEGG: ddf:DEFDS_1044 DNA-directed RNA polymerase sigma 54 factor; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; SPTR: DNA-directed RNA polymerase sigma 54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_004051502.1	COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: dap:Dacet_1308 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_004051503.1	COGs: COG1934 conserved hypothetical protein; InterPro IPR005653; KEGG: ddf:DEFDS_1042 hypothetical protein; PFAM: OstA family protein; SPTR: uncharacterized protein; PFAM: OstA-like protein; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA
YP_004051504.1	KEGG: dap:Dacet_1306 hypothetical protein; SPTR: uncharacterized protein
YP_004051505.1	COGs: COG1778 Low specificity phosphatase (HAD superfamily); InterPro IPR005834: IPR010023: IPR006549; KEGG: ddf:DEFDS_1040 3-deoxy-manno-octulosonate-8-phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; PRIAM: 3-deoxy-manno-octulosonate-8-phosphatase; SPTR: 3-deoxy-manno-octulosonate-8-phosphatase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_004051506.1	COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR000644: IPR001347: IPR004800; KEGG: ddf:DEFDS_1039 arabinose-5-phosphate isomerase; PFAM: sugar isomerase (SIS); CBS domain containing protein; PRIAM: Arabinose-5-phosphate isomerase; SMART: CBS domain containing protein; SPTR: Arabinose-5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_004051507.1	COGs: COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; InterPro IPR006218: IPR006269; KEGG: tye:THEYE_A1729 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; SPTR: 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_004051508.1	COGs: COG0504 CTP synthase (UTP-ammonia lyase); InterPro IPR017926: IPR017456: IPR000991: IPR004468; KEGG: ddf:DEFDS_1037 CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; PRIAM: CTP synthase; SPTR: CTP synthase; TIGRFAM: CTP synthase; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_004051509.1	COGs: COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; InterPro IPR003329: IPR004528; KEGG: dap:Dacet_1303 3-deoxy-D-manno-octulosonatecytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; PRIAM: 3-deoxy-manno-octulosonate cytidylyltransferase; SPTR: 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_004051510.1	COGs: COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); InterPro IPR008278: IPR004568: IPR002582; KEGG: dap:Dacet_1302 holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; SPTR: Holo-[acyl-carrier-protein] synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain; holo-[acyl-carrier-protein] synthase
YP_004051511.1	COGs: COG0854 Pyridoxal phosphate biosynthesis protein; InterPro IPR004569; KEGG: ddf:DEFDS_1034 pyridoxine 5-phosphate synthase; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; PRIAM: Pyridoxine 5'-phosphate synthase; SPTR: Pyridoxine 5'-phosphate synthase; TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthesis protein PdxJ; TIGRFAM: pyridoxine 5'-phosphate synthase
YP_004051512.1	COGs: COG1109 Phosphomannomutase; InterPro IPR016066: IPR005841: IPR005844: IPR005845: IPR 005846: IPR005843: IPR006352; KEGG: ddf:DEFDS_1033 phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase
YP_004051513.1	InterPro IPR012505; KEGG: ddf:DEFDS_1032 hypothetical protein; PFAM: YbbR family protein; SPTR: uncharacterized protein; PFAM: YbbR-like protein
YP_004051514.1	COGs: COG1624 conserved hypothetical protein; InterPro IPR003390: IPR014046; KEGG: ddf:DEFDS_1031 hypothetical protein; PFAM: protein of unknown function DUF147; SPTR: uncharacterized protein; PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: conserved hypothetical protein TIGR00159
YP_004051515.1	COGs: COG0294 Dihydropteroate synthase; InterPro IPR000489: IPR006390; KEGG: ddf:DEFDS_1030 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; PRIAM: Dihydropteroate synthase; SPTR: Dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_004051516.1	COGs: COG0465 ATP-dependent Zn protease; InterPro IPR003960: IPR003959: IPR000642: IPR005936: IPR 003593; KEGG: ddf:DEFDS_1029 cell division protein FtsH; PFAM: peptidase M41; ATPase AAA; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; SPTR: Cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_004051517.1	COGs: COG0634 Hypoxanthine-guanine phosphoribosyltransferase; InterPro IPR000836: IPR005904; KEGG: ddf:DEFDS_1028 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; PRIAM: Hypoxanthine phosphoribosyltransferase; SPTR: Hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_004051518.1	COGs: COG0037 ATPase of the PP-loop superfamily protein implicated in cell cycle control; InterPro IPR003006: IPR011063: IPR012795: IPR012796; KEGG: ddf:DEFDS_1027 cell cycle protein MesJ; PFAM: PP-loop domain protein; SPTR: Cell cycle protein MesJ; TIGRFAM: tRNA(Ile)-lysidine synthetase; manually curated; PFAM: TilS substrate C-terminal domain; PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_004051519.1	COGs: COG0166 Glucose-6-phosphate isomerase; InterPro IPR018189: IPR001672; KEGG: dap:Dacet_1293 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); SPTR: Glucose-6-phosphate isomerase; PFAM: Phosphoglucose isomerase
YP_004051520.1	COGs: COG1199 Rad3-related DNA helicase; InterPro IPR014013: IPR011545: IPR014001: IPR006555; KEGG: dap:Dacet_1292 helicase C2; PFAM: DEAD/DEAH box helicase domain protein; SMART: helicase c2; DEAD-like helicase; SPTR: Helicase c2; PFAM: DEAD_2; DEAD/DEAH box helicase
YP_004051521.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR007831; KEGG: ddf:DEFDS_1025 hypothetical protein; PFAM: General secretory system II protein E domain protein; SPTR: uncharacterized protein; PFAM: GSPII_E N-terminal domain
YP_004051522.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: bfs:BF2465 hydrolase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: uncharacterized protein; PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase
YP_004051523.1	COGs: COG2957 Peptidylarginine deiminase; InterPro IPR007466; KEGG: pdi:BDI_1176 hypothetical protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase; PRIAM: Agmatine deiminase; SPTR: uncharacterized protein; PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_004051524.1	COGs: COG0018 Arginyl-tRNA synthetase; InterPro IPR001412: IPR015945: IPR005148: IPR008909: IPR 001278; KEGG: ddf:DEFDS_1359 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_004051525.1	InterPro IPR007730; KEGG: ddf:DEFDS_1358 hypothetical protein; PFAM: Sporulation domain-containing protein; SPTR: uncharacterized protein; PFAM: Sporulation related domain
YP_004051526.1	COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006686: IPR006685; KEGG: tye:THEYE_A1970 integral membrane protein; PFAM: MscS Mechanosensitive ion channel; SPTR: integral membrane protein; PFAM: Mechanosensitive ion channel
YP_004051527.1	COGs: COG1749 Flagellar hook protein FlgE; InterPro IPR019776: IPR001444: IPR011491: IPR010930: IPR 020013; KEGG: ddf:DEFDS_1720 flagellar hook protein FlgE; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal body FlaE domain protein; SPTR: Flagellar hook protein FlgE; TIGRFAM: fagellar hook-basal body protein; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: flagellar hook protein FlgE, epsilon proteobacterial; fagellar hook-basal body proteins
YP_004051528.1	COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: ddf:DEFDS_1721 flagellar basal-body rod modification protein FlgD; PFAM: flagellar hook capping protein; SPTR: Flagellar basal-body rod modification protein FlgD; PFAM: Flagellar hook capping protein
YP_004051529.1	InterPro IPR021136; KEGG: ddf:DEFDS_1722 hypothetical protein; PFAM: Flagellar hook-length control protein-like, C-terminal domain; SPTR: uncharacterized protein fliK; PFAM: Flagellar hook-length control protein FliK
YP_004051530.1	COGs: COG0763 Lipid A disaccharide synthetase; InterPro IPR003835; KEGG: ddf:DEFDS_1723 lipid A disaccharide synthetase; PFAM: glycosyl transferase family 19; PRIAM: Lipid-A-disaccharide synthase; SPTR: Lipid A disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_004051531.1	COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR001775: IPR011662: IPR005644: IPR004846; KEGG: ddf:DEFDS_1724 hypothetical protein; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; SPTR: uncharacterized protein; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ
YP_004051532.1	COGs: COG3168 Tfp pilus assembly protein PilP; KEGG: ddf:DEFDS_1725 hypothetical protein; SPTR: uncharacterized protein; PFAM: Pilus assembly protein, PilP
YP_004051533.1	COGs: COG3167 Tfp pilus assembly protein PilO; KEGG: ddf:DEFDS_1726 hypothetical protein; SPTR: uncharacterized protein; PFAM: Pilus assembly protein, PilO
YP_004051534.1	COGs: COG3166 Tfp pilus assembly protein PilN; InterPro IPR007813; KEGG: ddf:DEFDS_1727 hypothetical protein; PFAM: Fimbrial assembly family protein; SPTR: uncharacterized protein; PFAM: Fimbrial assembly protein (PilN)
YP_004051535.1	COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: ddf:DEFDS_1728 type IV pilus assembly protein PilM; SPTR: Type IV pilus assembly protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM
YP_004051536.1	COGs: COG0139 Phosphoribosyl-AMP cyclohydrolase; InterPro IPR002496; KEGG: dap:Dacet_0283 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; PRIAM: Phosphoribosyl-AMP cyclohydrolase; SPTR: Phosphoribosyl-AMP cyclohydrolase; PFAM: Phosphoribosyl-AMP cyclohydrolase
YP_004051537.1	KEGG: dap:Dacet_0282 hypothetical protein; SPTR: uncharacterized protein
YP_004051538.1	COGs: COG0309 Hydrogenase maturation factor; InterPro IPR010916: IPR000728: IPR010918: IPR011854; KEGG: ddf:DEFDS_1730 hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; SPTR: Hydrogenase expression/formation protein HypE; TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: hydrogenase expression/formation protein HypE
YP_004051539.1	COGs: COG0409 Hydrogenase maturation factor; InterPro IPR002780; KEGG: ddf:DEFDS_1731 hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; SPTR: Hydrogenase expression/formation protein HypD; TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: Hydrogenase formation hypA family; TIGRFAM: hydrogenase expression/formation protein HypD
YP_004051540.1	COGs: COG0298 Hydrogenase maturation factor; InterPro IPR001109; KEGG: ddf:DEFDS_1732 hydrogenase expression/formation protein HupF/HypC; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); SPTR: Hydrogenase expression/formation protein HupF/HypC; TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: HupF/HypC family; TIGRFAM: hydrogenase assembly chaperone HypC/HupF
YP_004051541.1	COGs: COG3005 Nitrate/TMAO reductase membrane-bound tetraheme cytochrome c subunit; InterPro IPR011031; KEGG: ddf:DEFDS_1733 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; PFAM: NapC/NirT cytochrome c family, N-terminal region
YP_004051542.1	InterPro IPR020537: IPR000454: IPR002379: IPR005953; KEGG: ddf:DEFDS_1734 hypothetical protein; PFAM: H+transporting two-sector ATPase C subunit; SPTR: ATP synthase subunit c; TIGRFAM: ATP synthase F0, C subunit; PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_004051543.1	COGs: COG0356 F0F1-type ATP synthase subunit a; InterPro IPR000568; KEGG: ddf:DEFDS_1735 F0F1-type ATP synthase A subunit; PFAM: H+transporting two-sector ATPase A subunit; SPTR: ATP synthase subunit a; TIGRFAM: ATP synthase F0, A subunit; PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_004051544.1	KEGG: ddf:DEFDS_1736 hypothetical protein; SPTR: uncharacterized protein; PFAM: ATP synthase I chain
YP_004051545.1	KEGG: ddf:DEFDS_1737 hypothetical protein; SPTR: uncharacterized protein; PFAM: F0F1-ATPase subunit (ATPase_gene1)
YP_004051546.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814: IPR004639; KEGG: ddf:DEFDS_1739 glutamate-1-semialdehyde 2,1-aminomutase; PFAM: aminotransferase class-III; SPTR: Glutamate-1-semialdehyde 2,1-aminomutase; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_004051547.1	COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003439: IPR003593; KEGG: aar:Acear_0373 ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter; PFAM: ABC transporter
YP_004051548.1	COGs: COG0648 Endonuclease IV; InterPro IPR012307: IPR001719; KEGG: ddf:DEFDS_1740 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SMART: AP endonuclease family 2; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_004051549.1	COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: abi:Aboo_1355 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: Class II Aldolase and Adducin N-terminal domain, putative; PFAM: Class II Aldolase and Adducin N-terminal domain
YP_004051550.1	COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: ddf:DEFDS_1744 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_004051551.1	COGs: COG0202 DNA-directed RNA polymerase alpha subunit/40 kD subunit; InterPro IPR011261: IPR011262: IPR011260: IPR011773: IPR 011263; KEGG: ddf:DEFDS_1745 DNA-directed RNA polymerase subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type; SPTR: DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_004051552.1	COGs: COG0522 Ribosomal protein S4 and related protein; InterPro IPR002942: IPR018079: IPR001912: IPR005709; KEGG: ddf:DEFDS_1746 30S ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; SPTR: 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_004051553.1	COGs: COG0100 Ribosomal protein S11; InterPro IPR018102: IPR001971: IPR019981; KEGG: ddf:DEFDS_1747 30S ribosomal protein S11; PFAM: ribosomal protein S11; SPTR: 30S ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_004051554.1	COGs: COG0099 Ribosomal protein S13; InterPro IPR001892: IPR018269: IPR019980; KEGG: ddf:DEFDS_1748 30S ribosomal protein S13; PFAM: ribosomal protein S13; SPTR: 30S ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_004051555.1	InterPro IPR000473; KEGG: ddf:DEFDS_1749 50S ribosomal protein L36; PFAM: ribosomal protein L36; SPTR: 50S ribosomal protein L36; TIGRFAM: ribosomal protein L36; manually curated; PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_004051556.1	COGs: COG0361 Translation initiation factor 1 (IF-1); InterPro IPR006196: IPR004368; KEGG: dap:Dacet_0394 translation initiation factor IF-1; PFAM: S1 IF1 family protein; SPTR: Translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_004051557.1	COGs: COG0024 Methionine aminopeptidase; InterPro IPR002467: IPR001714: IPR000994; KEGG: ddf:DEFDS_1751 methionine aminopeptidase; PFAM: peptidase M24; SPTR: Methionine aminopeptidase; TIGRFAM: methionine aminopeptidase, type I; PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_004051558.1	COGs: COG0563 Adenylate kinase and related kinase; InterPro IPR000850: IPR007862: IPR006259; KEGG: ddf:DEFDS_1752 adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain-containing protein; SPTR: Adenylate kinase; TIGRFAM: adenylate kinase; PFAM: Adenylate kinase, active site lid; Adenylate kinase; TIGRFAM: adenylate kinases
YP_004051559.1	COGs: COG0201 Preprotein translocase subunit SecY; InterPro IPR002208; KEGG: ddf:DEFDS_1753 preprotein translocase subunit Y; PFAM: SecY protein; SPTR: Preprotein translocase subunit Y; TIGRFAM: preprotein translocase, SecY subunit; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_004051560.1	COGs: COG0200 Ribosomal protein L15; InterPro IPR001196: IPR005749; KEGG: ddf:DEFDS_1754 50S ribosomal protein L15; SPTR: 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_004051561.1	COGs: COG0098 Ribosomal protein S5; InterPro IPR013810: IPR018192: IPR005324: IPR005712; KEGG: ddf:DEFDS_1755 30S ribosomal protein S5; PFAM: Ribosomal protein S5; ribosomal protein S5 domain protein; SPTR: 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5, N-terminal domain; Ribosomal protein S5, C-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_004051562.1	COGs: COG0256 Ribosomal protein L18; InterPro IPR005484: IPR004389; KEGG: ddf:DEFDS_1756 50S ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; SPTR: 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_004051563.1	COGs: COG0097 Ribosomal protein L6P/L9E; InterPro IPR002358: IPR019906: IPR020040: IPR000702; KEGG: ddf:DEFDS_1757 50S ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; SPTR: 50S ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_004051564.1	COGs: COG0096 Ribosomal protein S8; InterPro IPR000630; KEGG: ddf:DEFDS_1758 30S ribosomal protein S8; PFAM: ribosomal protein S8; SPTR: 30S ribosomal protein S8; PFAM: Ribosomal protein S8
YP_004051565.1	COGs: COG0199 Ribosomal protein S14; InterPro IPR018271: IPR001209; KEGG: ddf:DEFDS_1759 30S ribosomal protein S14; PFAM: ribosomal protein S14; SPTR: 30S ribosomal protein S14; manually curated; PFAM: Ribosomal protein S14p/S29e
YP_004051566.1	COGs: COG0094 Ribosomal protein L5; InterPro IPR020929: IPR002132; KEGG: ddf:DEFDS_1760 50S ribosomal protein L5; SPTR: 50S ribosomal protein L5; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_004051567.1	COGs: COG0198 Ribosomal protein L24; InterPro IPR003256; KEGG: ddf:DEFDS_1761 50S ribosomal protein L24; SPTR: 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_004051568.1	COGs: COG0093 Ribosomal protein L14; InterPro IPR019972: IPR000218: IPR005745; KEGG: ddf:DEFDS_1762 50S ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; SPTR: 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_004051569.1	COGs: COG0186 Ribosomal protein S17; InterPro IPR019979: IPR000266: IPR019984; KEGG: ddf:DEFDS_1763 30S ribosomal protein S17; PFAM: ribosomal protein S17; SPTR: 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_004051570.1	InterPro IPR001854; KEGG: ddf:DEFDS_1764 50S ribosomal protein L29; PFAM: ribosomal protein L29; SPTR: 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_004051571.1	COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR000114: IPR016180; KEGG: ddf:DEFDS_1765 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_004051572.1	COGs: COG0092 Ribosomal protein S3; InterPro IPR004044: IPR018280: IPR008282: IPR001351: IPR 005704: IPR004087; KEGG: dap:Dacet_0378 30S ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein; SPTR: 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_004051573.1	COGs: COG0091 Ribosomal protein L22; InterPro IPR018260: IPR001063: IPR005727; KEGG: ddf:DEFDS_1767 50S ribosomal protein L22; PFAM: ribosomal protein L22/L17; SPTR: 50S ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_004051574.1	COGs: COG0185 Ribosomal protein S19; InterPro IPR020934: IPR002222: IPR005732; KEGG: dap:Dacet_0376 30S ribosomal protein S19; PFAM: ribosomal protein S19/S15; SPTR: 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_004051575.1	COGs: COG0090 Ribosomal protein L2; InterPro IPR002171: IPR005880; KEGG: ddf:DEFDS_1769 50S ribosomal protein L2; PFAM: ribosomal protein L2; SPTR: 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_004051576.1	COGs: COG0089 Ribosomal protein L23; InterPro IPR013025; KEGG: ddf:DEFDS_1770 50S ribosomal protein L23; PFAM: Ribosomal protein L25/L23; SPTR: 50S ribosomal protein L23; PFAM: Ribosomal protein L23
YP_004051577.1	COGs: COG0088 Ribosomal protein L4; InterPro IPR002136; KEGG: ddf:DEFDS_1771 50S ribosomal protein L4; PFAM: ribosomal protein L4/L1e; SPTR: 50S ribosomal protein L4; PFAM: Ribosomal protein L4/L1 family
YP_004051578.1	COGs: COG0087 Ribosomal protein L3; InterPro IPR019926: IPR000597: IPR019927; KEGG: ddf:DEFDS_1772 50S ribosomal protein L3; PFAM: ribosomal protein L3; SPTR: 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_004051579.1	COGs: COG0051 Ribosomal protein S10; InterPro IPR018268: IPR001848: IPR005731; KEGG: dap:Dacet_0371 30S ribosomal protein S10; PFAM: ribosomal protein S10; SPTR: 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_004051580.1	COGs: COG0050 GTPase - translation elongation factors; InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: ddf:DEFDS_1787 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004051581.1	COGs: COG0480 Translation elongation factors (GTPase); InterPro IPR000795: IPR004161: IPR005517: IPR000640: IPR 004540: IPR005225; KEGG: ddf:DEFDS_1775 translation elongation factor G; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain-containing protein; SPTR: Translation elongation factor G; TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_004051582.1	COGs: COG0049 Ribosomal protein S7; InterPro IPR000235: IPR005717; KEGG: ddf:DEFDS_1776 30S ribosomal protein S7; PFAM: ribosomal protein S7; SPTR: 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_004051583.1	COGs: COG0048 Ribosomal protein S12; InterPro IPR006032: IPR005679; KEGG: str:Sterm_4000 ribosomal protein S12; PFAM: ribosomal protein S12/S23; SPTR: 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_004051584.1	InterPro IPR011031; KEGG: ddf:DEFDS_2031 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; manually curated
YP_004051585.1	COGs: COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductase; InterPro IPR007197: IPR010723: IPR004559: IPR006638; KEGG: ddf:DEFDS_2032 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase
YP_004051586.1	COGs: COG2005 N-terminal domain of molybdenum-binding protein; InterPro IPR000847; KEGG: tye:THEYE_A0050 molybdenum transport regulatory protein ModE; PFAM: regulatory protein LysR; SPTR: Molybdenum transport regulatory protein ModE; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain
YP_004051587.1	COGs: COG0502 Biotin synthase; InterPro IPR007197: IPR010722: IPR002684: IPR006638; KEGG: ddf:DEFDS_1300 biotin synthetase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; PRIAM: Biotin synthase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthetase
YP_004051588.1	COGs: COG1220 ATP-dependent protease HslVU (ClpYQ) ATPase subunit; InterPro IPR013093: IPR004491: IPR003593; KEGG: ddf:DEFDS_2156 ATP-dependent protease HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; SPTR: ATP-dependent protease ATPase subunit HslU; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent protease HslVU, ATPase subunit
YP_004051589.1	COGs: COG5405 ATP-dependent protease HslVU (ClpYQ) peptidase subunit; InterPro IPR001353; KEGG: dap:Dacet_0324 20S proteasome A and B subunits; PFAM: 20S proteasome A and B subunits; SPTR: ATP-dependent protease subunit HslV; PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit
YP_004051590.1	KEGG: ddf:DEFDS_1170 hypothetical protein; SPTR: uncharacterized protein
YP_004051591.1	COGs: COG1271 Cytochrome bd-type quinol oxidase subunit 1; InterPro IPR003088: IPR009056; KEGG: ddf:DEFDS_1171 cytochrome c family protein; PFAM: cytochrome c class I; SPTR: Cytochrome c family protein; PFAM: Bacterial Cytochrome Ubiquinol Oxidase
YP_004051592.1	COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR017871: IPR003439: IPR003593; KEGG: saf:SULAZ_0044 spermidine/putrescine import ATP-binding protein PotA; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Spermidine/putrescine import ATP-binding protein PotA; PFAM: ABC transporter
YP_004051593.1	COGs: COG4149 ABC-type molybdate transport system permease component; InterPro IPR000515: IPR011867; KEGG: saf:SULAZ_0046 molybdate ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Molybdate ABC transporter, permease protein; TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: molybdate ABC transporter, permease protein
YP_004051594.1	KEGG: saf:SULAZ_0047 hypothetical protein; SPTR: uncharacterized protein
YP_004051595.1	InterPro IPR002781; KEGG: cyh:Cyan8802_4492 protein of unknown function DUF81; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004051596.1	COGs: COG0157 Nicotinate-nucleotide pyrophosphorylase; InterPro IPR002638: IPR006242; KEGG: mvn:Mevan_0544 ModD protein; PFAM: Quinolinate phosphoribosyl transferase; PRIAM: Nicotinate-nucleotide diphosphorylase (carboxylating); SPTR: ModD protein; TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; molybdenum utilization protein ModD
YP_004051597.1	COGs: COG0725 ABC-type molybdate transport system periplasmic component; InterPro IPR006059: IPR005950; KEGG: saf:SULAZ_0049 molybdate ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; SPTR: Molybdate ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: Bacterial extracellular solute-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_004051598.1	COGs: COG0086 DNA-directed RNA polymerase beta' subunit/160 kD subunit; InterPro IPR007080: IPR000722: IPR007066: IPR007083: IPR 007081: IPR012754: IPR006592; KEGG: ddf:DEFDS_1778 DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein; SPTR: DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_004051599.1	COGs: COG0085 DNA-directed RNA polymerase beta subunit/140 kD subunit; InterPro IPR007121: IPR007644: IPR007642: IPR007645: IPR 019462: IPR007120: IPR007641: IPR010243; KEGG: ddf:DEFDS_1779 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7; SPTR: DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_004051600.1	COGs: COG0222 Ribosomal protein L7/L12; InterPro IPR013823: IPR000206; KEGG: ddf:DEFDS_1780 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; SPTR: 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_004051601.1	COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: ddf:DEFDS_1781 50S ribosomal protein L10; PFAM: ribosomal protein L10; SPTR: 50S ribosomal protein L10; PFAM: Ribosomal protein L10
YP_004051602.1	COGs: COG0081 Ribosomal protein L1; InterPro IPR002143: IPR005878; KEGG: ddf:DEFDS_1782 50S ribosomal protein L1; PFAM: ribosomal protein L1; SPTR: 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_004051603.1	COGs: COG0080 Ribosomal protein L11; InterPro IPR020785: IPR020784: IPR020783: IPR006519: IPR 000911; KEGG: ddf:DEFDS_1783 50S ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11; SPTR: 50S ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_004051604.1	COGs: COG0250 Transcription antiterminator; InterPro IPR015869: IPR006645: IPR005824: IPR001062; KEGG: ddf:DEFDS_1784 transcriptional antitermination factor NusG; PFAM: NGN domain-containing protein; KOW domain protein; SMART: NGN domain-containing protein; KOW domain protein; SPTR: Transcription antitermination protein nusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_004051605.1	InterPro IPR001901: IPR005807; KEGG: ddf:DEFDS_1785 preprotein translocase subunit E; PFAM: protein secE/sec61-gamma protein; SPTR: Preprotein translocase subunit E; TIGRFAM: preprotein translocase, SecE subunit; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_004051606.1	InterPro IPR013838: IPR018264: IPR001705; KEGG: dap:Dacet_0358 50S ribosomal protein L33; PFAM: ribosomal protein L33; SPTR: 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_004051607.1	COGs: COG0050 GTPase - translation elongation factors; InterPro IPR000795: IPR004161: IPR004160: IPR004541: IPR 005225; KEGG: ddf:DEFDS_1787 translation elongation factor Tu; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain-containing protein; SPTR: Elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_004051608.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ddf:DEFDS_0145 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Two-component response regulator; PFAM: Response regulator receiver domain
YP_004051609.1	COGs: COG1923 Uncharacterized host factor I protein; InterPro IPR001163: IPR005001; KEGG: ddf:DEFDS_0146 small nuclear ribonucleoprotein; PFAM: Like-Sm ribonucleoprotein core; SPTR: Small nuclear ribonucleoprotein; TIGRFAM: RNA chaperone Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_004051610.1	InterPro IPR001845; KEGG: ddf:DEFDS_0179 AsrR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, AsrR family; PFAM: Bacterial regulatory protein, arsR family
YP_004051611.1	COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR020904: IPR002198: IPR002347; KEGG: bfs:BF1669 short-chain dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Short-chain dehydrogenase/reductase SDR; PFAM: short chain dehydrogenase
YP_004051612.1	COGs: COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; InterPro IPR006135; KEGG: ddf:DEFDS_2014 flagellar biosynthesis protein FlhB; PFAM: type III secretion exporter; SPTR: Flagellar biosynthesis protein FlhB; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flhB C-terminus-related protein
YP_004051613.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814; KEGG: dap:Dacet_2807 aminotransferase class-III; PFAM: aminotransferase class-III; SPTR: Aminotransferase class-III; PFAM: Aminotransferase class-III
YP_004051614.1	COGs: COG1801 conserved hypothetical protein; InterPro IPR002763; KEGG: ddf:DEFDS_2013 hypothetical protein; PFAM: protein of unknown function DUF72; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF72
YP_004051615.1	COGs: COG2200 FOG: EAL domain; InterPro IPR000215: IPR013767: IPR000160: IPR001633: IPR 000014: IPR000700; KEGG: eba:p1B362 sensory box protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; SPTR: NMT1/THI5 like family; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_004051616.1	COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; KEGG: aeh:Mlg_2684 ABC transporter, substrate-binding protein, putative; SPTR: ABC-type phosphate/phosphonate transport system periplasmic component
YP_004051617.1	COGs: COG3221 ABC-type phosphate/phosphonate transport system periplasmic component; KEGG: glo:Glov_3443 ABC transporter, substrate-binding protein, putative; SPTR: ABC transporter, substrate-binding protein, putative
YP_004051618.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR013767: IPR003661: IPR003594: IPR001789: IPR 008207: IPR005467: IPR000014: IPR004358; KEGG: chu:CHU_2895 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; SPTR: Sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004051619.1	COGs: COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit; InterPro IPR002023; KEGG: alv:Alvin_1864 NADH dehydrogenase (ubiquinone) 24 kDa subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; SPTR: Hox1E; PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit
YP_004051620.1	COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterPro IPR001949: IPR011538: IPR019554: IPR019575; KEGG: sus:Acid_5018 NADH dehydrogenase (quinone); PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; PRIAM: NADH dehydrogenase (quinone); SPTR: NADH dehydrogenase (Quinone); PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain
YP_004051621.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR017900: IPR016214: IPR001041: IPR019574: IPR 017896; KEGG: sus:Acid_5017 bidirectional hydrogenase complex protein HoxU; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; SPTR: Hydrogen dehydrogenase; PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; 4Fe-4S binding domain
YP_004051622.1	COGs: COG1941 Coenzyme F420-reducing hydrogenase gamma subunit; InterPro IPR006137; KEGG: dps:DP2211 hydrogenase, small chain; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; SPTR: Probable hydrogenase, small chain; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit
YP_004051623.1	COGs: COG3259 Coenzyme F420-reducing hydrogenase alpha subunit; InterPro IPR018194: IPR001501; KEGG: sus:Acid_5015 nickel-dependent hydrogenase, large subunit; PFAM: nickel-dependent hydrogenase large subunit; SPTR: Nickel-dependent hydrogenase, large subunit; PFAM: Nickel-dependent hydrogenase
YP_004051624.1	InterPro IPR000671; KEGG: afw:Anae109_2794 hypothetical protein; SPTR: uncharacterized protein; TIGRFAM: hydrogenase maturation protease; manually curated; TIGRFAM: hydrogenase maturation protease
YP_004051625.1	KEGG: ddf:DEFDS_1084 hypothetical protein; SPTR: uncharacterized protein; PFAM: Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_004051626.1	COGs: COG0598 Mg2+ and Co2+ transporter; InterPro IPR002523: IPR004488; KEGG: pmx:PERMA_1612 magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; SPTR: Magnesium and cobalt transport protein CorA; TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_004051627.1	InterPro IPR011031; KEGG: ddf:DEFDS_0821 multiheme C-type cytochrome; SPTR: Multiheme c-type cytochrome; PFAM: Class III cytochrome C family
YP_004051628.1	KEGG: ddf:DEFDS_0820 hypothetical protein; SPTR: uncharacterized protein
YP_004051629.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR001789: IPR002197: IPR003593: IPR 020441; KEGG: ddf:DEFDS_1012 two-component, sigma54 specific, transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component, sigma54 specific, transcriptional regulator; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004051630.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003660: IPR003661: IPR003594: IPR005467: IPR 004358; KEGG: dap:Dacet_1368 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051631.1	COGs: COG3267 Type II secretory pathway component ExeA (predicted ATPase); KEGG: ddf:DEFDS_1010 general secretion pathway protein A; SPTR: General secretion pathway protein A; PFAM: Archaeal ATPase
YP_004051632.1	InterPro IPR001440: IPR019734: IPR013026; KEGG: ddf:DEFDS_1009 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein
YP_004051633.1	COGs: COG0602 Organic radical activating protein; InterPro IPR007197; KEGG: ddf:DEFDS_1008 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily
YP_004051634.1	COGs: COG0720 6-pyruvoyl-tetrahydropterin synthase; InterPro IPR007115; KEGG: ddf:DEFDS_1007 6-pyruvoyl-tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; SPTR: 6-pyruvoyl-tetrahydropterin synthase; PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_004051635.1	COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR018496: IPR002942: IPR006145: IPR000748; KEGG: ddf:DEFDS_1006 ribosomal small subunit pseudouridine synthase A; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; SPTR: Pseudouridine synthase; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_004051636.1	COGs: COG1386 transcriptional regulator protein containing the HTH domain; InterPro IPR005234; KEGG: dap:Dacet_1365 chromosome segregation and condensation protein, ScpB; PFAM: chromosome segregation and condensation protein ScpB; SPTR: Chromosome segregation and condensation protein, ScpB; TIGRFAM: segregation and condensation protein B; PFAM: transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_004051637.1	COGs: COG1354 conserved hypothetical protein; InterPro IPR003768; KEGG: ddf:DEFDS_1004 chromosome segregation and condensation protein ScpA; PFAM: chromosome segregation and condensation protein ScpA; SPTR: Chromosome segregation and condensation protein ScpA; PFAM: ScpA/B protein
YP_004051638.1	COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR001412: IPR002305: IPR002306; KEGG: ddf:DEFDS_1003 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; PRIAM: Tryptophan--tRNA ligase; SPTR: Tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_004051639.1	COGs: COG1994 Zn-dependent protease; InterPro IPR008915; KEGG: ddf:DEFDS_1002 peptidase M50 family; PFAM: peptidase M50; SPTR: Peptidase, M50 family; PFAM: Peptidase family M50
YP_004051640.1	COGs: COG0704 Phosphate uptake regulator; InterPro IPR008170; KEGG: ddf:DEFDS_0404 phosphate transport system regulator; PFAM: PhoU family protein; SPTR: Phosphate transport system regulator; TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU
YP_004051641.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789: IPR001867; KEGG: ddf:DEFDS_0405 two-component system, OmpR family, response regulator; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; SPTR: Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_004051642.1	COGs: COG5002 Signal transduction histidine kinase; InterPro IPR013767: IPR003661: IPR003594: IPR005467: IPR 000014: IPR004358; KEGG: dap:Dacet_1228 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051643.1	KEGG: shn:Shewana3_2328 hypothetical protein; SPTR: uncharacterized protein
YP_004051644.1	COGs: COG1117 ABC-type phosphate transport system ATPase component; InterPro IPR017871: IPR003439: IPR015850: IPR005670: IPR 003593; KEGG: psl:Psta_2976 phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATP-binding component of ABC phosphate transporter; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein
YP_004051645.1	COGs: COG0581 ABC-type phosphate transport system permease component; InterPro IPR000515: IPR005672; KEGG: avn:Avin_48580 phosphate ABC transporter, permease protein PstA; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: uncharacterized protein; TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA
YP_004051646.1	COGs: COG4590 ABC-type uncharacterized transport system permease component; InterPro IPR000515; KEGG: nhl:Nhal_2290 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component
YP_004051647.1	COGs: COG0226 ABC-type phosphate transport system periplasmic component; InterPro IPR011862; KEGG: glo:Glov_0618 phosphate binding protein; SPTR: Strongly similar to phosphate binding protein of ABC-type phosphate transport system; TIGRFAM: phosphate binding protein; TIGRFAM: phosphate binding protein
YP_004051648.1	COGs: COG1872 conserved hypothetical protein; InterPro IPR003746; KEGG: ddf:DEFDS_0212 hypothetical protein; PFAM: protein of unknown function DUF167; SPTR: UPF0235 protein DEFDS_0212; PFAM: Uncharacterised ACR, YggU family COG1872; TIGRFAM: conserved hypothetical protein TIGR00251
YP_004051649.1	COGs: COG0002 acetylglutamate semialdehyde dehydrogenase; InterPro IPR000706: IPR000534: IPR012280; KEGG: ddf:DEFDS_0210 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; PRIAM: N-acetyl-gamma-glutamyl-phosphate reductase; SPTR: N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_004051650.1	COGs: COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase); InterPro IPR002813; KEGG: ddf:DEFDS_2004 arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; PRIAM: Amino-acid N-acetyltransferase; SPTR: Arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase
YP_004051651.1	COGs: COG0767 ABC-type transport system involved in resistance to organic solvents permease component; InterPro IPR003453; KEGG: ddf:DEFDS_1479 ABC transporter permease; PFAM: protein of unknown function DUF140; SPTR: ABC transporter, permease; PFAM: Domain of unknown function DUF140
YP_004051652.1	KEGG: ddf:DEFDS_1478 hypothetical protein; SPTR: uncharacterized protein
YP_004051653.1	COGs: COG1463 ABC-type transport system involved in resistance to organic solvents periplasmic component; InterPro IPR003399; KEGG: ddf:DEFDS_1477 hypothetical protein; PFAM: Mammalian cell entry related domain protein; SPTR: uncharacterized protein; PFAM: mce related protein
YP_004051654.1	KEGG: dap:Dacet_1689 hypothetical protein; SPTR: uncharacterized protein
YP_004051655.1	COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR002332: IPR017918: IPR002187; KEGG: dap:Dacet_1688 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II
YP_004051656.1	COGs: COG0174 Glutamine synthetase; InterPro IPR008147: IPR008146: IPR001637: IPR004809; KEGG: ddf:DEFDS_1474 glutamine synthetase type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; SPTR: Glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_004051657.1	COGs: COG0355 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); InterPro IPR020546: IPR001469; KEGG: ddf:DEFDS_1885 F0F1-type ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit-like; SPTR: ATP synthase epsilon chain; TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria)
YP_004051658.1	COGs: COG0055 F0F1-type ATP synthase beta subunit; InterPro IPR020003: IPR004100: IPR000194: IPR000793: IPR 005722: IPR003593; KEGG: ddf:DEFDS_1886 F0F1-type ATP synthase subunit beta; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_004051659.1	COGs: COG0224 F0F1-type ATP synthase gamma subunit; InterPro IPR000131; KEGG: ddf:DEFDS_1887 F0F1-type ATP synthase subunit gamma; PFAM: H+transporting two-sector ATPase gamma subunit; SPTR: ATP synthase gamma chain; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_004051660.1	COGs: COG0056 F0F1-type ATP synthase alpha subunit; InterPro IPR020003: IPR004100: IPR000194: IPR000793: IPR 005294; KEGG: ddf:DEFDS_1888 F0F1-type ATP synthase subunit alpha; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SPTR: ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_004051661.1	COGs: COG0712 F0F1-type ATP synthase delta subunit (mitochondrial oligomycin sensitivity protein); InterPro IPR000711; KEGG: dap:Dacet_0881 ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; SPTR: ATP synthase subunit delta; TIGRFAM: ATP synthase F1, delta subunit; PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_004051662.1	COGs: COG0711 F0F1-type ATP synthase subunit b; InterPro IPR002146; KEGG: ddf:DEFDS_1890 F0F1-type ATP synthase subunit B; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: F0F1-type ATP synthase, B subunit; PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_004051663.1	InterPro IPR002146; KEGG: ddf:DEFDS_1891 F0F1-type ATP synthase B' subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; SPTR: F0F1-type ATP synthase, B' subunit; PFAM: ATP synthase B/B' CF(0)
YP_004051664.1	COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR015911: IPR001576; KEGG: ddf:DEFDS_1892 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004051665.1	COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterPro IPR020830: IPR020831: IPR020828: IPR020829: IPR 006424: IPR020832; KEGG: ddf:DEFDS_1893 glyceraldehyde-3-phosphate dehydrogenase; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_004051666.1	InterPro IPR000700; KEGG: ddf:DEFDS_1894 hypothetical protein; SPTR: uncharacterized protein
YP_004051667.1	COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: ddf:DEFDS_1895 hypothetical protein; PFAM: phosphoribosyltransferase; SPTR: uncharacterized protein; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_004051668.1	COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: mar:MAE_30870 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2
YP_004051669.1	COGs: COG4951 conserved hypothetical protein; InterPro IPR002755: IPR013026; KEGG: sfu:Sfum_1354 hypothetical protein; PFAM: DNA primase small subunit; SPTR: uncharacterized protein; PFAM: Eukaryotic and archaeal DNA primase small subunit
YP_004051670.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR002729; KEGG: aar:Acear_0821 CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1
YP_004051671.1	KEGG: msi:Msm_1762 hypothetical protein; SPTR: uncharacterized protein
YP_004051673.1	KEGG: wbr:WGLp311 hypothetical protein; SPTR: FolC protein
YP_004051674.1	KEGG: nml:Namu_1187 glucosamine--fructose-6-phosphate aminotransferase; SPTR: Glucosamine/fructose-6-phosphate aminotransferase, isomerizing
YP_004051675.1	KEGG: saf:SULAZ_1047 hypothetical protein; SPTR: uncharacterized protein
YP_004051676.1	KEGG: saf:SULAZ_1046 hypothetical protein; SPTR: uncharacterized protein
YP_004051677.1	KEGG: taf:THA_319 hypothetical protein; SPTR: uncharacterized protein
YP_004051678.1	KEGG: pmh:P9215_17991 alanine racemase; SPTR: Alanine racemase
YP_004051679.1	KEGG: csc:Csac_0088 hypothetical protein; SPTR: uncharacterized protein
YP_004051680.1	COGs: COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537: IPR010173; KEGG: tye:THEYE_A0637 CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm5 family
YP_004051681.1	KEGG: tye:THEYE_A0636 CRISPR-associated protein, Csm4 family; SPTR: CRISPR-associated protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family
YP_004051682.1	COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537: IPR013412; KEGG: neu:NE0121 hypothetical protein; PFAM: protein of unknown function DUF324; SPTR: uncharacterized protein; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm3 family
YP_004051683.1	InterPro IPR010149; KEGG: msu:MS1650 hypothetical protein; PFAM: CRISPR-associated protein TM1810 domain protein; SPTR: CRISPR-associated protein, Csm2 family; TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: Protein of unknown function (DUF310); TIGRFAM: CRISPR-associated protein, Csm2 family
YP_004051684.1	COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR000160: IPR013408; KEGG: tye:THEYE_A0633 CRISPR-associated protein, Csm1 family; SPTR: CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein, Csm1 family; TIGRFAM: CRISPR-associated protein, Csm1 family
YP_004051685.1	KEGG: tye:THEYE_A0066 hypothetical protein; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1887)
YP_004051686.1	KEGG: tye:THEYE_A0068 CRISPR-associated protein Cas6; SPTR: CRISPR-associated protein Cas6; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6
YP_004051687.1	COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR007197: IPR012840; KEGG: dap:Dacet_1927 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein
YP_004051688.1	COGs: COG1785 Alkaline phosphatase; InterPro IPR001952: IPR006311; KEGG: tye:THEYE_A1782 alkaline phosphatase; PFAM: Alkaline phosphatase; PRIAM: Alkaline phosphatase; SMART: Alkaline phosphatase; SPTR: Alkaline phosphatase; PFAM: Alkaline phosphatase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence
YP_004051689.1	KEGG: gur:Gura_1504 hypothetical protein; SPTR: uncharacterized protein
YP_004051690.1	COGs: COG0688 Phosphatidylserine decarboxylase; InterPro IPR003817; KEGG: ppd:Ppro_2685 phosphatidylserine decarboxylase-related; PFAM: phosphatidylserine decarboxylase-related; PRIAM: Phosphatidylserine decarboxylase; SPTR: Phosphatidylserine decarboxylase-related; PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor
YP_004051691.1	KEGG: dat:HRM2_01910 hypothetical protein; SPTR: uncharacterized protein; PFAM: Prolipoprotein diacylglyceryl transferase
YP_004051692.1	InterPro IPR003675; KEGG: hau:Haur_2308 abortive infection protein; PFAM: abortive infection protein; SPTR: CAAX amino terminal protease family protein; PFAM: CAAX amino terminal protease family
YP_004051693.1	COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: dap:Dacet_2972 radical SAM domain protein; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily
YP_004051694.1	COGs: COG0438 Glycosyltransferase; InterPro IPR004013: IPR001296; KEGG: dap:Dacet_2971 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; PHP domain protein; SPTR: Glycosyl transferase group 1; PFAM: PHP domain; Glycosyl transferases group 1
YP_004051695.1	COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR003714: IPR006596; KEGG: dap:Dacet_1703 PhoH family protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: PhoH family protein; PFAM: PhoH-like protein
YP_004051696.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633: IPR000644: IPR000160; KEGG: dap:Dacet_2030 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: Diguanylate cyclase/phosphodiesterase; PFAM: EAL domain; CBS domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051697.1	COGs: COG2200 FOG: EAL domain; InterPro IPR001633; KEGG: tle:Tlet_1224 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; SPTR: Diguanylate phosphodiesterase; PFAM: EAL domain
YP_004051698.1	KEGG: cts:Ctha_2369 hypothetical protein; SPTR: uncharacterized protein
YP_004051699.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: ddf:DEFDS_0689 hypothetical protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051700.1	COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: ddf:DEFDS_1703 hypothetical protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: uncharacterized protein; PFAM: CheW-like domain; Chemotaxis phosphatase, CheZ
YP_004051701.1	COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: ddf:DEFDS_1704 flagellar biosynthesis protein FlhG; SPTR: Flagellar biosynthesis protein FlhG; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_004051702.1	COGs: COG3216 conserved hypothetical protein; InterPro IPR018639; KEGG: ddf:DEFDS_1705 hypothetical protein; PFAM: Protein of unknown function DUF2062; SPTR: uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2062)
YP_004051703.1	COGs: COG0466 ATP-dependent Lon protease; InterPro IPR008268: IPR003111: IPR003959: IPR004815: IPR 003593: IPR001984; KEGG: ddf:DEFDS_1706 ATP-dependent Lon protease; PFAM: peptidase S16 lon domain protein; ATPase AAA; PRIAM: Endopeptidase La; SMART: peptidase S16 lon domain protein; AAA ATPase; SPTR: ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_004051704.1	COGs: COG0071 Molecular chaperone (small heat shock protein); InterPro IPR002068; KEGG: ddf:DEFDS_1707 small heat shock protein, class I; PFAM: heat shock protein Hsp20; SPTR: Small heat shock protein, class I; PFAM: Hsp20/alpha crystallin family
YP_004051705.1	COGs: COG1210 UDP-glucose pyrophosphorylase; InterPro IPR005835: IPR005771; KEGG: dap:Dacet_1839 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; SPTR: UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase
YP_004051706.1	COGs: COG1355 dioxygenase; InterPro IPR002737; KEGG: ddf:DEFDS_1709 hypothetical protein; PFAM: protein of unknown function DUF52; SPTR: uncharacterized protein; PFAM: Memo-like protein
YP_004051707.1	KEGG: dap:Dacet_1841 hypothetical protein; SPTR: uncharacterized protein
YP_004051708.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR005244: IPR007197: IPR020050: IPR006638; KEGG: ddf:DEFDS_1711 hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily; TIGRFAM: menaquinone biosynthesis protein, SCO4494 family; radical SAM domain protein, CofH subfamily
YP_004051709.1	COGs: COG2206 HD-GYP domain; InterPro IPR001789: IPR006674: IPR006675: IPR003607; KEGG: ddf:DEFDS_1712 hypothetical protein; PFAM: response regulator receiver; metal-dependent phosphohydrolase HD sub domain; SMART: response regulator receiver; metal-dependent phosphohydrolase HD region; SPTR: uncharacterized protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Response regulator receiver domain; TIGRFAM: uncharacterized domain HDIG
YP_004051710.1	COGs: COG1272 membrane protein hemolysin III homolog; InterPro IPR004254: IPR005744; KEGG: dap:Dacet_1143 channel protein, hemolysin III family; PFAM: Hly-III family protein; SPTR: Channel protein, hemolysin III family; TIGRFAM: channel protein, hemolysin III family; PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_004051711.1	COGs: COG1543 conserved hypothetical protein; InterPro IPR004300: IPR015293; KEGG: dap:Dacet_0432 glycoside hydrolase family 57; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; SPTR: Glycoside hydrolase family 57; PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57
YP_004051712.1	KEGG: dap:Dacet_0433 hypothetical protein; SPTR: uncharacterized protein; PFAM: Rho termination factor, N-terminal domain
YP_004051713.1	COGs: COG1085 Galactose-1-phosphate uridylyltransferase; InterPro IPR001937; KEGG: gsu:GSU3256 galactose-1-phosphate uridylyltransferase; PRIAM: UDP-glucose--hexose-1-phosphate uridylyltransferase; SPTR: Galactose-1-phosphate uridylyltransferase; PFAM: Galactose-1-phosphate uridyl transferase, N-terminal domain; TIGRFAM: galactose-1-phosphate uridylyltransferase, family 1
YP_004051714.1	COGs: COG1449 Alpha-amylase/alpha-mannosidase; InterPro IPR004300: IPR015178: IPR015179; KEGG: saf:SULAZ_1014 glycosyl hydrolase, family 57; PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; Domain of unknown function DUF1926; PRIAM: 4-alpha-glucanotransferase; SPTR: Glycosyl hydrolase, family 57; PFAM: Domain of unknown function (DUF1925); Glycosyl hydrolase family 57; Domain of unknown function (DUF1926)
YP_004051715.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterPro IPR003661: IPR003594: IPR005467; KEGG: ddf:DEFDS_1112 hypothetical protein; PFAM: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP-binding region ATPase domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051716.1	COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992: IPR018076: IPR003004; KEGG: ddf:DEFDS_1111 type IV pilus assembly protein PilC; PFAM: Type II secretion system F domain; SPTR: Type IV pilus assembly protein PilC; PFAM: Bacterial type II secretion system protein F domain
YP_004051717.1	COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321: IPR003593; KEGG: ddf:DEFDS_1110 twitching motility protein PilT; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Twitching motility protein PilT; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_004051718.1	COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR013374; KEGG: ddf:DEFDS_1109 type IV pilus assembly protein PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: Type IV pilus assembly protein PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E
YP_004051719.1	COGs: COG0169 Shikimate 5-dehydrogenase; InterPro IPR013708: IPR006151: IPR011342; KEGG: ddf:DEFDS_1108 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase
YP_004051720.1	COGs: COG2928 conserved hypothetical protein; InterPro IPR007462; KEGG: ddf:DEFDS_1107 hypothetical protein; PFAM: protein of unknown function DUF502; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF502)
YP_004051721.1	COGs: COG0035 Uracil phosphoribosyltransferase; InterPro IPR000836: IPR005765; KEGG: ddf:DEFDS_1106 uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_004051722.1	COGs: COG2233 Xanthine/uracil permease; InterPro IPR006042: IPR006043; KEGG: ddf:DEFDS_1105 uracil transporter; PFAM: Xanthine/uracil/vitamin C permease; SPTR: Uracil transporter; TIGRFAM: uracil-xanthine permease; PFAM: Permease family; TIGRFAM: uracil-xanthine permease
YP_004051723.1	COGs: COG3481 HD-superfamily hydrolase; InterPro IPR004365: IPR006674: IPR006675: IPR003607; KEGG: ddf:DEFDS_1104 HAD-superfamily hydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; nucleic acid binding OB-fold tRNA/helicase-type; SMART: metal-dependent phosphohydrolase HD region; SPTR: HAD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; OB-fold nucleic acid binding domain; TIGRFAM: uncharacterized domain HDIG
YP_004051724.1	KEGG: ddf:DEFDS_1102 hypothetical protein; SPTR: uncharacterized protein
YP_004051725.1	KEGG: ddf:DEFDS_1101 hypothetical protein; SPTR: uncharacterized protein
YP_004051726.1	COGs: COG0781 Transcription termination factor; InterPro IPR006027: IPR011605; KEGG: ddf:DEFDS_1100 N utilization substance protein B; PFAM: NusB/RsmB/TIM44; SPTR: N utilization substance protein B homolog; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_004051727.1	COGs: COG0054 Riboflavin synthase beta-chain; InterPro IPR002180; KEGG: ddf:DEFDS_1099 riboflavin synthase beta chain; PFAM: 67-dimethyl-8-ribityllumazine synthase; SPTR: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004051728.1	COGs: COG0108 3 4-dihydroxy-2-butanone 4-phosphate synthase; InterPro IPR016299: IPR000422: IPR000926; KEGG: ddf:DEFDS_1098 riboflavin biosynthesis bifunctional protein RibBA; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; SPTR: Riboflavin biosynthesis bifunctional protein RibBA; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_004051729.1	COGs: COG0307 Riboflavin synthase alpha chain; InterPro IPR001783; KEGG: dap:Dacet_1324 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; PRIAM: Riboflavin synthase; SPTR: Riboflavin synthase, alpha subunit; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_004051730.1	COGs: COG1985 Pyrimidine reductase riboflavin biosynthesis; InterPro IPR016192: IPR002125: IPR002734: IPR004794: IPR 011549; KEGG: ddf:DEFDS_1096 bifunctional riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; PRIAM: Diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase; SPTR: Bifunctional riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_004051731.1	COGs: COG0344 membrane protein; InterPro IPR003811: IPR020788; KEGG: ddf:DEFDS_1095 hypothetical protein; PFAM: protein of unknown function DUF205; SPTR: Glycerol-3-phosphate acyltransferase; PFAM: Domain of unknown function (DUF205); TIGRFAM: acyl-phosphate glycerol 3-phosphate acyltransferase
YP_004051732.1	COGs: COG0558 Phosphatidylglycerophosphate synthase; InterPro IPR000462: IPR004570; KEGG: ddf:DEFDS_1093 phosphatidylglycerophosphate synthase; PFAM: CDP-alcohol phosphatidyltransferase; PRIAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; SPTR: Phosphatidylglycerophosphate synthase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_004051733.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR001789: IPR002197: IPR003593: IPR 020441; KEGG: ddf:DEFDS_1092 two-component system response regulator PilR; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component system response regulator PilR; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004051734.1	COGs: COG0782 Transcription elongation factor; InterPro IPR018151: IPR001437: IPR006359; KEGG: ddf:DEFDS_1091 transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain-containing protein; SPTR: Transcription elongation factor; TIGRFAM: transcription elongation factor GreA; PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_004051735.1	COGs: COG1570 Exonuclease VII large subunit; InterPro IPR004365: IPR020579: IPR003753; KEGG: ddf:DEFDS_1090 exodeoxyribonuclease VII large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; SPTR: Exodeoxyribonuclease 7 large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_004051736.1	InterPro IPR007060; KEGG: ddf:DEFDS_1089 cell division protein FtsB; PFAM: Septum formation initiator; SPTR: Cell division protein FtsB; PFAM: Septum formation initiator
YP_004051737.1	KEGG: ddf:DEFDS_1088 hypothetical protein; SPTR: uncharacterized protein
YP_004051738.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: dap:Dacet_0878 diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051739.1	InterPro IPR003006; KEGG: ddf:DEFDS_1086 hypothetical protein; SPTR: uncharacterized protein
YP_004051740.1	COGs: COG1923 Uncharacterized host factor I protein; InterPro IPR001163: IPR005001; KEGG: ddf:DEFDS_1085 RNA-binding protein Hfq; PFAM: Like-Sm ribonucleoprotein core; SPTR: Protein hfq; TIGRFAM: RNA chaperone Hfq; PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_004051741.1	InterPro IPR009501; KEGG: ddf:DEFDS_1632 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556
YP_004051742.1	COGs: COG2206 HD-GYP domain; InterPro IPR003018: IPR006674: IPR003607; KEGG: ddf:DEFDS_1565 metal dependent phosphohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; PFAM: HD domain; GAF domain
YP_004051743.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ddf:DEFDS_1564 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain
YP_004051744.1	COGs: COG0340 Biotin-(acetyl-CoA carboxylase) ligase; InterPro IPR004143: IPR004408; KEGG: dap:Dacet_1239 biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; SPTR: Biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region
YP_004051745.1	COGs: COG1521 transcriptional regulator protein; InterPro IPR004619; KEGG: dap:Dacet_1240 transcriptional acitvator, Baf family; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: transcriptional acitvator, Baf family; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_004051746.1	COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR001440: IPR019734: IPR013026; KEGG: ddf:DEFDS_1561 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein; PFAM: Tetratricopeptide repeat
YP_004051747.1	COGs: COG1426 conserved hypothetical protein; KEGG: ddf:DEFDS_1560 hypothetical protein; SPTR: uncharacterized protein
YP_004051748.1	COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR016454: IPR000192; KEGG: ddf:DEFDS_1558 cysteine desulfurase; PFAM: aminotransferase class V; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS
YP_004051749.1	COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871: IPR017787; KEGG: ddf:DEFDS_1557 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein; TIGRFAM: FeS cluster assembly scaffold protein NifU; PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; FeS cluster assembly scaffold IscU; FeS cluster assembly scaffold protein NifU, Clostridium type
YP_004051750.1	COGs: COG0694 Thioredoxin-like protein and domains; InterPro IPR001075; KEGG: ddf:DEFDS_1556 nitrogen-fixing NifU domain protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: Nitrogen-fixing NifU domain protein; PFAM: NifU-like domain
YP_004051751.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004051752.1	KEGG: dap:Dacet_0329 hypothetical protein; SPTR: uncharacterized protein
YP_004051753.1	COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541: IPR003557; KEGG: dap:Dacet_0330 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein
YP_004051754.1	COGs: COG2386 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR003544; KEGG: ddf:DEFDS_0176 heme exporter membrane protein; PFAM: cytochrome c-type biogenesis protein CcmB; SPTR: Heme exporter membrane protein; PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB
YP_004051755.1	COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003439: IPR003593; KEGG: ddf:DEFDS_0175 heme exporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Heme exporter ATP-binding protein; manually curated; PFAM: ABC transporter
YP_004051756.1	COGs: COG1138 Cytochrome c biogenesis factor; InterPro IPR002541: IPR003567; KEGG: ddf:DEFDS_0174 cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c-type biogenesis protein CcmF; PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF
YP_004051757.1	COGs: COG2332 Cytochrome c-type biogenesis protein CcmE; InterPro IPR004329; KEGG: dap:Dacet_0334 cytochrome c-type biogenesis protein CcmE; PFAM: CcmE/CycJ protein; SPTR: Cytochrome c-type biogenesis protein CcmE; PFAM: CcmE
YP_004051758.1	InterPro IPR007922; KEGG: ddf:DEFDS_0268 hypothetical protein; PFAM: protein of unknown function DUF721; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF721)
YP_004051759.1	COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR000868; KEGG: tko:TK1650 nicotinamidase; PFAM: isochorismatase hydrolase; PRIAM: Nicotinamidase; SPTR: Probable nicotinamidase; PFAM: Isochorismatase family
YP_004051760.1	COGs: COG1488 Nicotinic acid phosphoribosyltransferase; InterPro IPR007229: IPR015977: IPR006405; KEGG: cbc:CbuK_0807 nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; SPTR: Nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase
YP_004051761.1	InterPro IPR018631: IPR012547; KEGG: saf:SULAZ_0094 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004051762.1	KEGG: ddf:DEFDS_0789 hypothetical protein; SPTR: uncharacterized protein; manually curated
YP_004051763.1	KEGG: dap:Dacet_0326 hypothetical protein; SPTR: uncharacterized protein
YP_004051764.1	KEGG: dap:Dacet_0327 hypothetical protein; SPTR: uncharacterized protein
YP_004051765.1	COGs: COG0583 Transcriptional regulator; InterPro IPR000847: IPR005119; KEGG: ddf:DEFDS_2079 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_004051766.1	KEGG: ddf:DEFDS_0056 hypothetical protein; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF2892)
YP_004051767.1	COGs: COG0841 Cation/multidrug efflux pump; InterPro IPR001036; KEGG: ddf:DEFDS_0055 acriflavin resistance protein, AcrB/AcrD/AcrF family; PFAM: acriflavin resistance protein; SPTR: Acriflavin resistance protein, AcrB/AcrD/AcrF family; PFAM: AcrB/AcrD/AcrF family
YP_004051768.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: ddf:DEFDS_0054 acriflavin resistance protein, AcrA/AcrE family; PFAM: secretion protein HlyD family protein; SPTR: Acriflavin resistance protein, AcrA/AcrE family; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004051769.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ddf:DEFDS_0053 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein
YP_004051770.1	InterPro IPR001845; KEGG: ddf:DEFDS_0179 AsrR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: Transcriptional regulator, AsrR family; PFAM: Bacterial regulatory protein, arsR family
YP_004051771.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR001789: IPR003593; KEGG: ddf:DEFDS_1376 two-component system, NtrC family, response regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; SMART: response regulator receiver; AAA ATPase; SPTR: Two-component system, NtrC family, response regulator; PFAM: Response regulator receiver domain; Sigma-54 interaction domain
YP_004051772.1	COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389: IPR004682; KEGG: ddf:DEFDS_1375 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7; SPTR: C4-dicarboxylate transporter, substrate-binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family
YP_004051773.1	InterPro IPR010656: IPR017452; KEGG: ddf:DEFDS_1374 hypothetical protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: uncharacterized protein; PFAM: DctM-like transporters
YP_004051774.1	COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR010656: IPR004681; KEGG: ddf:DEFDS_0684 C4-dicarboxylate transporter large subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: C4-dicarboxylate transporter, large subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit
YP_004051775.1	COGs: COG3090 TRAP-type C4-dicarboxylate transport system small permease component; InterPro IPR007387; KEGG: ddf:DEFDS_0683 C4-dicarboxylate transporter small subunit; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: C4-dicarboxylate transporter, small subunit; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component
YP_004051776.1	COGs: COG1638 TRAP-type C4-dicarboxylate transport system periplasmic component; InterPro IPR018389: IPR004682; KEGG: ddf:DEFDS_0682 C4-dicarboxylate transporter substrate-binding protein; PFAM: Extracellular solute-binding protein, family 7; SPTR: C4-dicarboxylate transporter, substrate-binding protein; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Bacterial extracellular solute-binding protein, family 7; TIGRFAM: tripartite ATP-independent periplasmic transporter solute receptor, DctP family
YP_004051777.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160; KEGG: pth:PTH_0546 hypothetical protein; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; SPTR: uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_004051778.1	COGs: COG0297 Glycogen synthase; InterPro IPR013534: IPR001296: IPR011835; KEGG: glo:Glov_0388 glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain-containing protein; glycosyl transferase group 1; PRIAM: Starch synthase; SPTR: Glycogen synthase; TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type
YP_004051779.1	COGs: COG0268 Ribosomal protein S20; InterPro IPR002583; KEGG: ddf:DEFDS_1532 30S ribosomal protein S20; PFAM: ribosomal protein S20; SPTR: 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_004051780.1	COGs: COG1414 Transcriptional regulator; InterPro IPR005471: IPR014757; KEGG: ddf:DEFDS_2106 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator
YP_004051781.1	COGs: COG2186 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: ddf:DEFDS_1345 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: GntR domain protein; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_004051782.1	COGs: COG1556 conserved hypothetical protein; InterPro IPR003741; KEGG: ddf:DEFDS_1348 hypothetical protein; PFAM: protein of unknown function DUF162; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, YkgG family COG1556
YP_004051783.1	COGs: COG1139 conserved hypothetical protein containing a ferredoxin-like domain; InterPro IPR007087: IPR017900: IPR003741: IPR004017: IPR 017896; KEGG: ddf:DEFDS_1349 iron-sulfur cluster-binding protein; PFAM: protein of unknown function DUF162; protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Iron-sulfur cluster-binding protein; PFAM: Cysteine-rich domain; Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein
YP_004051784.1	InterPro IPR001185; KEGG: ttj:TTHA0627 large-conductance mechanosensitive channel; PFAM: large-conductance mechanosensitive channel; SPTR: Large-conductance mechanosensitive channel; PFAM: Large-conductance mechanosensitive channel, MscL
YP_004051785.1	COGs: COG0744 Membrane carboxypeptidase (penicillin-binding protein); InterPro IPR020053: IPR001264: IPR011812; KEGG: sat:SYN_01407 monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; SPTR: Monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase
YP_004051786.1	KEGG: ddf:DEFDS_1354 hypothetical protein; SPTR: uncharacterized protein
YP_004051787.1	COGs: COG0730 permease; InterPro IPR002781; KEGG: ddf:DEFDS_1353 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: uncharacterized protein; PFAM: Sulfite exporter TauE/SafE
YP_004051788.1	KEGG: sbi:SORBI_08g001220 hypothetical protein; SPTR: Sensory box histidine kinase
YP_004051789.1	COGs: COG0206 Cell division GTPase; InterPro IPR020805: IPR003008: IPR018316: IPR000158; KEGG: ddf:DEFDS_0601 cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; SPTR: Cell division protein ftsZ; TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_004051790.1	COGs: COG0849 Actin-like ATPase involved in cell division; InterPro IPR003494: IPR020823; KEGG: ddf:DEFDS_0600 cell division protein FtsA; PFAM: cell division protein FtsA; SPTR: Cell division protein FtsA; TIGRFAM: cell division protein FtsA; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_004051791.1	InterPro IPR013685; KEGG: dap:Dacet_2198 hypothetical protein; PFAM: Polypeptide-transport-associated domain protein FtsQ-type; SPTR: uncharacterized protein; PFAM: POTRA domain, FtsQ-type
YP_004051792.1	COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR000291: IPR011127: IPR011095: IPR011761: IPR 005905; KEGG: ddf:DEFDS_0598 D-alanine-D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; PRIAM: D-alanine--D-alanine ligase; SPTR: D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_004051793.1	COGs: COG0773 UDP-N-acetylmuramate-alanine ligase; InterPro IPR000713: IPR013221: IPR004101: IPR005758; KEGG: ddf:DEFDS_0597 UDP-N-acetylmuramate-alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; SPTR: UDP-N-acetylmuramate--L-alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_004051794.1	COGs: COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; InterPro IPR004276: IPR007235: IPR006009; KEGG: ddf:DEFDS_0596 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; PRIAM: Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; SPTR:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyltransferase family 28 N-terminal domain; Glycosyltransferase family 28 C-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_004051795.1	COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182: IPR013437; KEGG: ddf:DEFDS_0595 cell division protein FtsW; PFAM: cell cycle protein; SPTR: Cell division protein FtsW; TIGRFAM: cell division protein FtsW; PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW
YP_004051796.1	COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR018109: IPR013221: IPR004101: IPR005762; KEGG: ddf:DEFDS_0594 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_004051797.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018480: IPR018481: IPR003524; KEGG: ddf:DEFDS_0593 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; SPTR:Phospho-N-acetylmuramoyl-pentapeptide-transfer ase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-trans ferase; PFAM: Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_004051798.1	COGs: COG0770 UDP-N-acetylmuramyl pentapeptide synthase; InterPro IPR000713: IPR013221: IPR005863; KEGG: dap:Dacet_2205 Mur ligase middle domain protein; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR: Mur ligase middle domain protein; TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-d iaminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_004051799.1	COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR018109: IPR013221: IPR004101: IPR005761; KEGG: ddf:DEFDS_0591 UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; SPTR:UDP-N-acetylmuramoylananine-D-glutamate-2,6-di aminopimelateligase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_004051800.1	COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR005311: IPR001460; KEGG: dap:Dacet_2207 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PRIAM: Peptidoglycan glycosyltransferase; SPTR: Peptidoglycan glycosyltransferase; PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain
YP_004051801.1	KEGG: ddf:DEFDS_0589 hypothetical protein; SPTR: uncharacterized protein
YP_004051802.1	COGs: COG0275 S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; InterPro IPR002903; KEGG: ddf:DEFDS_0588 S-adenosyl-methyltransferase; PFAM: methyltransferase; SPTR: Ribosomal RNA small subunit methyltransferase H; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_004051803.1	COGs: COG2001 conserved hypothetical protein; InterPro IPR020603: IPR003444; KEGG: ddf:DEFDS_0587 hypothetical protein; PFAM: MraZ domain; SPTR: Protein mraZ; TIGRFAM: MraZ protein; PFAM: MraZ protein; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; mraZ protein
YP_004051804.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR013655: IPR003661: IPR003594: IPR001789: IPR 005467: IPR000014: IPR004358; KEGG: mpi:Mpet_0061 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SPTR: PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_004051805.1	COGs: COG0705 membrane protein; InterPro IPR002610; KEGG: ddf:DEFDS_0217 rhomboid family protein; PFAM: Rhomboid family protein; SPTR: Rhomboid family protein; PFAM: Rhomboid family
YP_004051806.1	COGs: COG0616 Periplasmic serine protease (ClpP class); KEGG: ddf:DEFDS_0218 hypothetical protein; SPTR: uncharacterized protein; PFAM: Serine dehydrogenase proteinase
YP_004051807.1	COGs: COG1275 Tellurite resistance protein and related permease; InterPro IPR004695; KEGG: rrs:RoseRS_2285 C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; SPTR: C4-dicarboxylate transporter/malic acid transport protein; PFAM: C4-dicarboxylate transporter/malic acid transport protein; TIGRFAM: C4-dicarboxylate transporter/malic acid transport protein
YP_004051808.1	COGs: COG1197 Transcription-repair coupling factor (superfamily II helicase); InterPro IPR003711: IPR011545: IPR001650: IPR005118: IPR 014021: IPR004576: IPR014001; KEGG: ddf:DEFDS_0229 transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_004051809.1	COGs: COG2870 ADP-heptose synthase bifunctional sugar kinase/adenylyltransferase; InterPro IPR004820: IPR011914: IPR004821; KEGG: ddf:DEFDS_0228 glycerol-3-phosphate cytidyltransferase; PFAM: cytidylyltransferase; SPTR: Glycerol-3-phosphate cytidyltransferase; TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: Cytidylyltransferase; TIGRFAM: rfaE bifunctional protein, domain II; cytidyltransferase-related domain
YP_004051810.1	COGs: COG0279 Phosphoheptose isomerase; InterPro IPR001347: IPR004515: IPR020620; KEGG: dap:Dacet_0259 phosphoheptose isomerase-like protein; PFAM: sugar isomerase (SIS); SPTR: Phosphoheptose isomerase-like protein; TIGRFAM: phosphoheptose isomerase; PFAM: SIS domain; TIGRFAM: phosphoheptose isomerase
YP_004051811.1	COGs: COG1875 ATPase related to phosphate starvation-inducible protein PhoH; InterPro IPR003714: IPR006596; KEGG: ddf:DEFDS_0226 phosphate starvation-induced protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; SPTR: Phosphate starvation-induced protein; PFAM: PhoH-like protein
YP_004051812.1	COGs: COG1090 nucleoside-diphosphate sugar epimerase; InterPro IPR001509: IPR013549: IPR010099; KEGG: dap:Dacet_2899 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; SPTR: uncharacterized protein; PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: conserved hypothetical protein TIGR01777
YP_004051813.1	KEGG: dap:Dacet_2898 hypothetical protein; SPTR: uncharacterized protein
YP_004051814.1	COGs: COG0316 conserved hypothetical protein; Contains Selenocysteine; InterPro IPR000361; KEGG: glo:Glov_1950 HesB/YadR/YfhF-family protein; PFAM: HesB/YadR/YfhF-family protein; SPTR: HesB/YadR/YfhF-family protein; manually curated; PFAM: Iron-sulphur cluster biosynthesis
YP_004051815.1	COGs: COG3893 Inactivated superfamily I helicase; KEGG: dsa:Desal_2713 hypothetical protein; SPTR: uncharacterized protein
YP_004051816.1	COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212: IPR014016: IPR014017; KEGG: rsd:TGRD_136 RecB-like exodeoxyribonuclease V beta chain; PFAM: UvrD/REP helicase; SPTR: uncharacterized protein; PFAM: UvrD/REP helicase
YP_004051817.1	COGs: COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductase; InterPro IPR013154: IPR013149: IPR014189; KEGG: geo:Geob_1083 NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; SPTR: NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family
YP_004051818.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR010065; KEGG: ddf:DEFDS_1239 polar amino acid ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_004051819.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR018313: IPR001638: IPR001320; KEGG: ddf:DEFDS_1238 polar amino acid ABC transporter substrate-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: Polar amino acid ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004051820.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR000515: IPR010065; KEGG: ddf:DEFDS_1237 polar amino acid ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Polar amino acid ABC transporter, permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_004051821.1	COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646: IPR006674: IPR006675: IPR003607; KEGG: ddf:DEFDS_0057 tRNA nucleotidyltransferase (CCA-adding enzyme); PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: tRNA nucleotidyltransferase (CCA-adding enzyme); TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG
YP_004051822.1	COGs: COG1751 conserved hypothetical protein; InterPro IPR015074; KEGG: fpl:Ferp_1595 protein of unknown function DUF1867; SPTR: uncharacterized protein; PFAM: Pyruvate kinase, alpha/beta domain
YP_004051823.1	COGs: COG0622 phosphoesterase; InterPro IPR004843: IPR000979; KEGG: ddf:DEFDS_0058 hypothetical protein; PFAM: metallophosphoesterase; SPTR: uncharacterized protein; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family
YP_004051824.1	COGs: COG2509 Uncharacterized FAD-dependent dehydrogenase; InterPro IPR006076; KEGG: ddf:DEFDS_0059 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase
YP_004051825.1	COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR000257: IPR006361; KEGG: ddf:DEFDS_0318 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); PRIAM: Uroporphyrinogen decarboxylase; SPTR: Uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_004051826.1	COGs: COG0276 Protoheme ferro-lyase (ferrochelatase); InterPro IPR019772: IPR001015; KEGG: dap:Dacet_1257 ferrochelatase; PFAM: ferrochelatase; SPTR: Ferrochelatase; TIGRFAM: ferrochelatase; PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_004051827.1	COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537: IPR006371; KEGG: ddf:DEFDS_0320 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; SPTR: 4-hydroxybenzoate polyprenyltransferase; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase
YP_004051828.1	COGs: COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; InterPro IPR003382: IPR004507; KEGG: dap:Dacet_1255 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_004051829.1	KEGG: ddf:DEFDS_0322 hypothetical protein; SPTR: uncharacterized protein
YP_004051830.1	KEGG: ddf:DEFDS_0323 hypothetical protein; SPTR: uncharacterized protein
YP_004051831.1	COGs: COG1639 signal transduction protein; InterPro IPR013976: IPR006675: IPR003607; KEGG: ddf:DEFDS_0324 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_004051832.1	KEGG: ddf:DEFDS_0325 hypothetical protein; SPTR: uncharacterized protein
YP_004051833.1	COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR000630: IPR005646: IPR000719: IPR002290; KEGG: ddf:DEFDS_1136 hypothetical protein; PFAM: protein of unknown function DUF342; SMART: serine/threonine protein kinase; SPTR: uncharacterized protein; PFAM: Protein kinase domain; Protein of unknown function (DUF342)
YP_004051834.1	COGs: COG0348 Polyferredoxin; InterPro IPR017900: IPR017896; KEGG: dak:DaAHT2_0700 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: 4Fe-4S ferredoxin iron-sulfur binding domain protein; TIGRFAM: MauM/NapG family ferredoxin-type protein
YP_004051835.1	COGs: COG2006 conserved hypothetical protein; KEGG: sat:SYN_02059 cytoplasmic protein; SPTR: Hypothetical cytosolic protein; PFAM: Domain of unknown function (DUF362)
YP_004051836.1	COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834: IPR010237: IPR006402; KEGG: ddf:DEFDS_1650 pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; SPTR: Pyrimidine 5'-nucleotidase; TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; pyrimidine 5'-nucleotidase
YP_004051837.1	COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789; KEGG: dap:Dacet_2704 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver protein; PFAM: Response regulator receiver domain
YP_004051838.1	COGs: COG1639 signal transduction protein; InterPro IPR013976: IPR006675; KEGG: dap:Dacet_2705 metal dependent phosphohydrolase; PFAM: Metal-dependent hydrolase HDOD; SPTR: Metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: HDOD domain; TIGRFAM: uncharacterized domain HDIG
YP_004051839.1	COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822: IPR001932; KEGG: dap:Dacet_2706 protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Protein serine/threonine phosphatase; PFAM: Stage II sporulation protein E (SpoIIE)
YP_004051840.1	COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004033; KEGG: ddf:DEFDS_1643 ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; SPTR: Menaquinone biosynthesis methyltransferase ubiE; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_004051841.1	COGs: COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase; InterPro IPR002830; KEGG: ddf:DEFDS_1642 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; PFAM: Carboxylyase-related protein; SPTR: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD; TIGRFAM: UbiD family decarboxylase; PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: menaquinone biosynthesis decarboxylase, SCO4490 family; UbiD family decarboxylases
YP_004051842.1	COGs: COG0177 EndoIII-related endonuclease; InterPro IPR003265: IPR003651: IPR005759; KEGG: ddf:DEFDS_1641 endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; iron-sulfur cluster loop; SPTR: Endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_004051843.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: ddf:DEFDS_P121 transposase; PFAM: transposase mutator type; SPTR: Transposase; PFAM: Transposase, Mutator family
YP_004051844.1	COGs: COG2199 FOG: GGDEF domain; InterPro IPR004010: IPR000160; KEGG: ddf:DEFDS_0866 hypothetical protein; PFAM: GGDEF domain containing protein; Cache domain protein; SMART: GGDEF domain containing protein; SPTR: uncharacterized protein; TIGRFAM: diguanylate cyclase; PFAM: Cache domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004051845.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR011547: IPR002645; KEGG: dap:Dacet_2356 sulphate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: Sulphate transporter; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: high affinity sulphate transporter 1
YP_004051846.1	COGs: COG1806 conserved hypothetical protein; InterPro IPR005177; KEGG: ddf:DEFDS_0531 hypothetical protein; PFAM: protein of unknown function DUF299; SPTR: phosphotransferase DEFDS_0531; PFAM: Domain of unknown function (DUF299)
YP_004051847.1	COGs: COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); InterPro IPR018239: IPR001679: IPR013839: IPR004150: IPR 001357: IPR013840: IPR003583; KEGG: ddf:DEFDS_0530 NAD-dependent DNA ligase; PFAM: NAD-dependent DNA ligase adenylation; NAD-dependent DNA ligase OB-fold; BRCT domain protein; PRIAM: DNA ligase (NAD(+)); SMART: NAD-dependent DNA ligase; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; SPTR: DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent
YP_004051848.1	COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: ddf:DEFDS_0529 peptidase U32 family; PFAM: peptidase U32; SPTR: Peptidase, U32 family; PFAM: Peptidase family U32
YP_004051849.1	COGs: COG4122 O-methyltransferase; InterPro IPR013216; KEGG: ddf:DEFDS_0528 caffeoyl-CoA O-methyltransferase; PFAM: Methyltransferase type 11; SPTR: Caffeoyl-CoA O-methyltransferase; PFAM: O-methyltransferase
YP_004051850.1	KEGG: ddf:DEFDS_0527 hypothetical protein; SPTR: uncharacterized protein
YP_004051851.1	KEGG: ddf:DEFDS_0526 flagellar protein FliJ; SPTR: Flagellar protein FliJ; PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ
YP_004051852.1	COGs: COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; InterPro IPR020003: IPR004100: IPR000194: IPR005714: IPR 003593; KEGG: ddf:DEFDS_0525 flagellar-specific ATP synthase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; SPTR: Flagellar-specific ATP synthase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI
YP_004051853.1	COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: ddf:DEFDS_0524 flagellar assembly protein FliH; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein FliH; PFAM: Flagellar assembly protein FliH
YP_004051854.1	COGs: COG1536 Flagellar motor switch protein; InterPro IPR000090; KEGG: ddf:DEFDS_0523 flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; SPTR: Flagellar motor switch protein FliG; TIGRFAM: flagellar motor switch protein FliG; PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG
YP_004051855.1	COGs: COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; InterPro IPR006182: IPR013556: IPR000067; KEGG: ddf:DEFDS_0522 flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; SPTR: Flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: Secretory protein of YscJ/FliF family; Flagellar M-ring protein C-terminal; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
YP_004051856.1	COGs: COG1677 Flagellar hook-basal body protein; InterPro IPR001624; KEGG: ddf:DEFDS_0521 flagellar hook-basal body complex protein FliE; PFAM: flagellar hook-basal body complex protein FliE; SPTR: Flagellar hook-basal body complex protein fliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE
YP_004051857.1	COGs: COG1558 Flagellar basal body rod protein; InterPro IPR019776: IPR001444: IPR010930: IPR006299; KEGG: ddf:DEFDS_0520 flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC
YP_004051858.1	COGs: COG1815 Flagellar basal body protein; InterPro IPR019776: IPR001444: IPR006300; KEGG: ddf:DEFDS_0519 flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; SPTR: Flagellar basal-body rod protein FlgB; TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB
YP_004051859.1	COGs: COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase; InterPro IPR000031; KEGG: pho:PH0320 phosphoribosylaminoimidazole carboxylase catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; SPTR: Phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_004051860.1	COGs: COG0009 translation factor (SUA5); InterPro IPR010923: IPR006070: IPR005145: IPR004388; KEGG: mbu:Mbur_0139 translation factor SUA5; PFAM: SUA5/yciO/yrdC domain; SUA5 domain-containing protein; SPTR: SUA5-type translation factor; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: yrdC domain; SUA5 domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_004051861.1	COGs: COG1826 Sec-independent protein secretion pathway components; InterPro IPR003369: IPR003998; KEGG: ddf:DEFDS_2139 twin-arginine translocation system component TatB; PFAM: sec-independent translocation protein mttA/Hcf106; SPTR: Twin-arginine translocation system component TatB; PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family; twin arginine-targeting protein translocase TatB
YP_004051862.1	COGs: COG0805 Sec-independent protein secretion pathway component TatC; InterPro IPR019820: IPR002033: IPR019822; KEGG: ddf:DEFDS_2140 twin-arginine translocation system component TatC; PFAM: Sec-independent periplasmic protein translocase; SPTR: Twin-arginine translocation system component TatC; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_004051863.1	COGs: COG2896 Molybdenum cofactor biosynthesis protein; InterPro IPR000385: IPR007197: IPR010505: IPR013483: IPR 006638; KEGG: dap:Dacet_2442 molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial
YP_004051864.1	COGs: COG3875 conserved hypothetical protein; InterPro IPR018657; KEGG: ddf:DEFDS_2142 hypothetical protein; PFAM: Protein of unknown function DUF2088; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2088)
YP_004051865.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: saf:SULAZ_0355 spore coat polysaccharide biosynthesis protein SpsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Spore coat polysaccharide biosynthesis protein SpsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004051866.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: dvl:Dvul_2647 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004051867.1	COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: taf:THA_864 succinoglycan biosynthesis protein ExoA; PFAM: glycosyl transferase family 2; SPTR: Succinoglycan biosynthesis protein ExoA; PFAM: Glycosyl transferase family 2
YP_004051868.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: lch:Lcho_0296 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004051869.1	InterPro IPR001296; KEGG: cce:Ccel_2930 TPR/glycosyl transferase domain-containing protein; PFAM: glycosyl transferase group 1; SPTR: TPR/glycosyl transferase domain-containing protein
YP_004051870.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: sse:Ssed_2968 acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; SPTR: Capsular polysaccharide synthesis enzyme CapJ; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_004051871.1	InterPro IPR002797; KEGG: glo:Glov_1503 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; PFAM: Polysaccharide biosynthesis protein
YP_004051872.1	COGs: COG0381 UDP-N-acetylglucosamine 2-epimerase; InterPro IPR003331; KEGG: abu:Abu_0692 hexose epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; PRIAM: UDP-N-acetylglucosamine 2-epimerase; SPTR: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase
YP_004051873.1	COGs: COG1045 Serine acetyltransferase; InterPro IPR001451; KEGG: glo:Glov_1509 transferase hexapeptide repeat containing protein; PFAM: transferase hexapeptide repeat containing protein; SPTR: Transferase hexapeptide repeat containing protein; PFAM: Bacterial transferase hexapeptide (three repeats)
YP_004051874.1	COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: wsu:WS2188 oxidoreductase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: OXIDOREDUCTASE; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold
YP_004051875.1	InterPro IPR010916: IPR001440: IPR019734: IPR013026; KEGG: ddf:DEFDS_0831 hypothetical protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: uncharacterized protein
YP_004051876.1	COGs: COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: ddf:DEFDS_0833 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two-component sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051877.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR002078: IPR001789: IPR002197: IPR003593: IPR 020441; KEGG: dap:Dacet_2320 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase; SPTR: Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_004051878.1	COGs: COG0253 Diaminopimelate epimerase; InterPro IPR018510: IPR001653; KEGG: ddf:DEFDS_0214 diaminopimelate epimerase; PFAM: diaminopimelate epimerase; SPTR: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_004051879.1	COGs: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; InterPro IPR020624: IPR020625: IPR002220: IPR005263; KEGG: ddf:DEFDS_0215 dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; SPTR: Dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_004051880.1	COGs: COG0289 Dihydrodipicolinate reductase; InterPro IPR000846: IPR011770; KEGG: ddf:DEFDS_0216 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; PRIAM: Dihydrodipicolinate reductase; SPTR: Dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_004051881.1	COGs: COG2077 Peroxiredoxin; InterPro IPR017936: IPR018219: IPR013740; KEGG: hya:HY04AAS1_0035 redoxin domain protein; PFAM: Redoxin domain protein; SPTR: Redoxin domain protein; PFAM: Redoxin
YP_004051882.1	InterPro IPR001041; KEGG: ddf:DEFDS_2025 hypothetical protein; PFAM: ferredoxin; SPTR: uncharacterized protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain
YP_004051883.1	COGs: COG1126 ABC-type polar amino acid transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_2026 amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004051884.1	COGs: COG0765 ABC-type amino acid transport system permease component; InterPro IPR010065: IPR000515; KEGG: ddf:DEFDS_2027 amino acid ABC transporter permease; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Amino acid ABC transporter, permease; TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_004051885.1	COGs: COG0834 ABC-type amino acid transport/signal transduction systems periplasmic component/domain; InterPro IPR001320: IPR001638: IPR018313; KEGG: dap:Dacet_2157 extracellular solute-binding protein family 3; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; SPTR: Extracellular solute-binding protein family 3; PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_004051886.1	KEGG: ddf:DEFDS_2029 hypothetical protein; SPTR: uncharacterized protein
YP_004051887.1	COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR000644: IPR002912; KEGG: ddf:DEFDS_1490 CBS domain containing protein; PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; SMART: CBS domain containing protein; SPTR: CBS domain containing protein; PFAM: CBS domain; ACT domain
YP_004051888.1	COGs: COG1541 Coenzyme F390 synthetase; KEGG: ddf:DEFDS_1491 phenylacetate-CoA ligase; SPTR: Phenylacetate-CoA ligase; PFAM: AMP-binding enzyme
YP_004051889.1	COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_1492 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004051890.1	COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709: IPR010916: IPR001828; KEGG: ddf:DEFDS_1493 branched-chain amino acid ABC transporter substrate-binding protein; PFAM: Extracellular ligand-binding receptor; SPTR: Branched-chain amino acid ABC transporter, substrate-binding protein; PFAM: Receptor family ligand binding region
YP_004051891.1	COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: ddf:DEFDS_1494 branched-chain amino acid ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004051892.1	COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: ddf:DEFDS_1495 branched-chain amino acid ABC transporter permease; PFAM: inner-membrane translocator; SPTR: Branched-chain amino acid ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component
YP_004051893.1	COGs: COG1022 Long-chain acyl-CoA synthetase (AMP-forming); InterPro IPR020845: IPR000873; KEGG: ddf:DEFDS_1496 long-chain fatty-acid-CoA ligase; PFAM: AMP-dependent synthetase and ligase; SPTR: Long-chain fatty-acid-CoA ligase; PFAM: AMP-binding enzyme
YP_004051894.1	COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593: IPR003439; KEGG: ddf:DEFDS_1497 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Branched-chain amino acid ABC transporter, ATP-binding protein; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_004051895.1	COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: pmx:PERMA_0406 oligopeptidase A; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; PRIAM: Oligopeptidase A; SPTR: Oligopeptidase A; PFAM: Peptidase family M3
YP_004051896.1	KEGG: ddf:DEFDS_0072 hypothetical protein; SPTR: uncharacterized protein
YP_004051897.1	COGs: COG4399 conserved hypothetical protein; InterPro IPR007383; KEGG: ddf:DEFDS_1931 hypothetical protein; PFAM: protein of unknown function DUF445; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF445)
YP_004051898.1	COGs: COG0248 Exopolyphosphatase; InterPro IPR003695; KEGG: ddf:DEFDS_1930 phosphatase Ppx/GppA family; PFAM: Ppx/GppA phosphatase; SPTR: Phosphatase, Ppx/GppA family; PFAM: Ppx/GppA phosphatase family
YP_004051899.1	COGs: COG1802 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: ddf:DEFDS_1607 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_004051900.1	COGs: COG1802 Transcriptional regulators; InterPro IPR000524: IPR011711; KEGG: ddf:DEFDS_1608 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_004051901.1	COGs: COG1234 Metal-dependent hydrolase of the beta-lactamase superfamily III; KEGG: dap:Dacet_0875 hypothetical protein; SPTR: uncharacterized protein
YP_004051902.1	KEGG: ddf:DEFDS_0696 hypothetical protein; SPTR: uncharacterized protein
YP_004051903.1	COGs: COG0475 Kef-type K+ transport systems membrane components; InterPro IPR002178: IPR006153; KEGG: npu:Npun_R6387 sodium/hydrogen exchanger; PFAM: sodium/hydrogen exchanger; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; SPTR: Probable Na/H antiporter; PFAM: Sodium/hydrogen exchanger family; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
YP_004051904.1	COGs: COG2114 Adenylate cyclase family 3 (some protein contain HAMP domain); InterPro IPR001054: IPR007890; KEGG: pmx:PERMA_0988 adenylate cyclase; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; SPTR: Adenylate cyclase; PFAM: Adenylate and Guanylate cyclase catalytic domain; CHASE2 domain
YP_004051905.1	COGs: COG1641 conserved hypothetical protein; InterPro IPR002822; KEGG: ddf:DEFDS_1640 hypothetical protein; PFAM: protein of unknown function DUF111; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF111; TIGRFAM: conserved hypothetical protein TIGR00299
YP_004051906.1	COGs: COG0277 FAD/FMN-containing dehydrogenase; InterPro IPR017896: IPR016166: IPR017900: IPR006094: IPR 004113: IPR004017; KEGG: ddf:DEFDS_1394 oxidoreductase; PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; SPTR: Oxidoreductase; PFAM: Cysteine-rich domain; FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
YP_004051907.1	KEGG: ddf:DEFDS_1393 hypothetical protein; SPTR: uncharacterized protein
YP_004051908.1	COGs: COG0621 2-methylthioadenine synthetase; InterPro IPR005839: IPR006463: IPR006638: IPR002792: IPR 013848: IPR020612: IPR007197; KEGG: ddf:DEFDS_1391 tRNA-i(6)A37 thiotransferase enzyme; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: tRNA-i(6)A37 thiotransferase enzyme; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; RNA modification enzyme, MiaB family
YP_004051909.1	COGs: COG1259 conserved hypothetical protein; InterPro IPR003729; KEGG: ddf:DEFDS_1390 hypothetical protein; PFAM: protein of unknown function DUF151; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, COG1259
YP_004051910.1	COGs: COG0388 amidohydrolase; InterPro IPR003010; KEGG: ddf:DEFDS_1398 hypothetical protein; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: uncharacterized protein; PFAM: Carbon-nitrogen hydrolase
YP_004051911.1	KEGG: ddf:DEFDS_1397 hypothetical protein; SPTR: uncharacterized protein
YP_004051912.1	COGs: COG2897 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: dde:Dde_0679 rhodanese-like protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; SPTR: Rhodanese-like; PFAM: Rhodanese-like domain
YP_004051913.1	COGs: COG0469 Pyruvate kinase; InterPro IPR001697: IPR015793: IPR018209: IPR015794; KEGG: pmx:PERMA_0022 pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PRIAM: Pyruvate kinase; SPTR: Pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_004051914.1	KEGG: mhu:Mhun_1397 hypothetical protein; SPTR: uncharacterized protein
YP_004051915.1	InterPro IPR010916; KEGG: bss:BSUW23_12590 hypothetical protein; SPTR: uncharacterized protein
YP_004051916.1	COGs: COG2314 membrane protein; KEGG: pha:PSHAa1483 hypothetical protein; SPTR: TM2; PFAM: TM2 domain
YP_004051917.1	COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: dol:Dole_2093 restriction modification system DNA specificity subunit; PFAM: restriction modification system DNA specificity domain; SPTR: Type I restriction modification DNA specificity domain protein; PFAM: Type I restriction modification DNA specificity domain
YP_004051918.1	COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296: IPR002052: IPR003356; KEGG: mbn:Mboo_1031 N-6 DNA methylase; PFAM: N-6 DNA methylase; PRIAM: Site-specific DNA-methyltransferase (adenine-specific); SPTR: N-6 DNA methylase; PFAM: N-6 DNA Methylase; HsdM N-terminal domain
YP_004051919.1	KEGG: pth:PTH_0697 hypothetical protein; SPTR: uncharacterized protein
YP_004051920.1	COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR014001: IPR014021: IPR001650: IPR007409: IPR 006935; KEGG: dol:Dole_2096 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; helicase domain protein; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: Type III restriction protein res subunit; manually curated; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Domain of unknown function (DUF3559)
YP_004051921.1	KEGG: slt:Slit_1091 type III restriction protein res subunit; SPTR: Type III restriction protein res subunit; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N)
YP_004051922.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004051923.1	COGs: COG1115 Na+/alanine symporter; InterPro IPR001463; KEGG: chy:CHY_0075 amino acid carrier protein; PFAM: sodium:alanine symporter; SPTR: Amino acid carrier protein; TIGRFAM: amino acid carrier protein; PFAM: Sodium:alanine symporter family; TIGRFAM: amino acid carrier protein
YP_004051924.1	COGs: COG1611 Rossmann fold nucleotide-binding protein; InterPro IPR005269; KEGG: ddf:DEFDS_0585 hypothetical protein; PFAM: hypothetical protein; SPTR: uncharacterized protein; PFAM: Possible lysine decarboxylase; TIGRFAM: conserved hypothetical protein, DprA/Smf-related, family 1; conserved hypothetical protein, DprA/Smf-related, family 2
YP_004051925.1	COGs: COG0288 Carbonic anhydrase; InterPro IPR015892: IPR001765; KEGG: sul:SYO3AOP1_1765 carbonate dehydratase; PFAM: carbonic anhydrase; PRIAM: Carbonate dehydratase; SPTR: Carbonic anhydrase; PFAM: Carbonic anhydrase
YP_004051926.1	COGs: COG0722 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; InterPro IPR006219: IPR006218; KEGG: gme:Gmet_2375 phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; PRIAM: 3-deoxy-7-phosphoheptulonate synthase; SPTR: 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_004051927.1	COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR003141: IPR004013; KEGG: ddf:DEFDS_0779 hypothetical protein; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; SPTR: uncharacterized protein; PFAM: PHP domain
YP_004051928.1	KEGG: ddf:DEFDS_0780 hypothetical protein; SPTR: uncharacterized protein
YP_004051929.1	COGs: COG4231 Indolepyruvate ferredoxin oxidoreductase alpha and beta subunits; InterPro IPR017721: IPR017896: IPR002880: IPR011766; KEGG: ddf:DEFDS_0781 indolepyruvate ferredoxin oxidoreductase subunit alpha; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; SPTR: Indolepyruvate ferredoxin oxidoreductase, alpha subunit; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit; PFAM: domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, alpha subunit
YP_004051930.1	COGs: COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase gamma subunit; InterPro IPR019752; KEGG: dap:Dacet_1341 pyruvate/ketoisovalerate oxidoreductase; PFAM: Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; PRIAM: Indolepyruvate ferredoxin oxidoreductase; SPTR: Pyruvate/ketoisovalerate oxidoreductase; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: indolepyruvate ferredoxin oxidoreductase, beta subunit
YP_004051931.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: ddf:DEFDS_2133 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051932.1	COGs: COG1391 Glutamine synthetase adenylyltransferase; InterPro IPR005190: IPR013546; KEGG: ddf:DEFDS_2134 glutamate-ammonia ligase adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; PRIAM: [Glutamate--ammonia-ligase] adenylyltransferase; SPTR: Glutamate-ammonia ligase adenylyltransferase; PFAM: GlnD PII-uridylyltransferase; Glutamate-ammonia ligase adenylyltransferase
YP_004051933.1	COGs: COG0352 Thiamine monophosphate synthase; InterPro IPR003733; KEGG: ddf:DEFDS_2135 hypothetical protein; PFAM: thiamine monophosphate synthase; SPTR: uncharacterized protein; PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_004051934.1	KEGG: ddf:DEFDS_1682 hypothetical protein; SPTR: uncharacterized protein
YP_004051935.1	KEGG: ddf:DEFDS_0913 hypothetical protein; SPTR: uncharacterized protein
YP_004051936.1	COGs: COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); InterPro IPR001041: IPR017896: IPR017900: IPR000283: IPR 019574: IPR006963: IPR006656; KEGG: ddf:DEFDS_1612 molybdopterin oxidoreductase molybdopterin-binding subunit; PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; SPTR: Molybdopterin oxidoreductase, molybdopterin-binding subunit; PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molybdopterin oxidoreductase Fe4S4 domain
YP_004051937.1	COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR000759: IPR013027; KEGG: ddf:DEFDS_1613 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_004051938.1	InterPro IPR011031; KEGG: dap:Dacet_0085 hypothetical protein; SPTR: uncharacterized protein; PFAM: NapC/NirT cytochrome c family, N-terminal region
YP_004051939.1	COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006311: IPR017909: IPR006655: IPR019546: IPR 006963: IPR006656: IPR006657; KEGG: ddf:DEFDS_1820 periplasmic nitrate reductase NapA; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Twin-arginine translocation pathway, signal sequence, subgroup; molydopterin dinucleotide-binding region; SPTR: Periplasmic nitrate reductase NapA; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; TIGRFAM: periplasmic nitrate reductase, large subunit; Tat (twin-arginine translocation) pathway signal sequence
YP_004051940.1	KEGG: dap:Dacet_0087 hypothetical protein; SPTR: uncharacterized protein; PFAM: NapD protein
YP_004051941.1	InterPro IPR017896: IPR017900; KEGG: ddf:DEFDS_1822 periplasmic nitrate reductase NapG; SPTR: Periplasmic nitrate reductase NapG; PFAM: 4Fe-4S binding domain; TIGRFAM: MauM/NapG family ferredoxin-type protein
YP_004051942.1	COGs: COG0348 Polyferredoxin; InterPro IPR017896: IPR017900; KEGG: dap:Dacet_0089 NapH; SPTR: NapH; TIGRFAM: ferredoxin-type protein, NapH/MauN family
YP_004051943.1	COGs: COG4585 Signal transduction histidine kinase; InterPro IPR005467: IPR003594; KEGG: slt:Slit_1594 multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: Signal transduction histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004051944.1	COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR001789: IPR000792; KEGG: dba:Dbac_2295 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: Two component transcriptional regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_004051945.1	KEGG: bhy:BHWA1_00756 hypothetical protein; SPTR: uncharacterized protein
YP_004051946.1	COGs: COG4206 Outer membrane cobalamin receptor protein; InterPro IPR012910: IPR000531; KEGG: ddf:DEFDS_0532 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_004051947.1	COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: ddf:DEFDS_0533 iron ABC transporter substrate-binding protein; PFAM: periplasmic binding protein; SPTR: Iron ABC transporter, substrate-binding protein; PFAM: Periplasmic binding protein
YP_004051948.1	COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522; KEGG: ddf:DEFDS_0535 iron ABC transporter permease; PFAM: transport system permease protein; SPTR: Iron ABC transporter, permease; PFAM: FecCD transport family
YP_004051949.1	COGs: COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components; InterPro IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_0536 iron ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Iron ABC transporter, ATP-binding protein; PFAM: ABC transporter
YP_004051950.1	InterPro IPR006260; KEGG: hya:HY04AAS1_0708 TonB family protein; PFAM: TonB domain; SPTR: TonB family protein; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004051951.1	InterPro IPR012307; KEGG: ddf:DEFDS_2052 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: uncharacterized protein; PFAM: Xylose isomerase-like TIM barrel
YP_004051952.1	COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: ddf:DEFDS_2051 adenosylcobinamide-phosphate guanylyltransferase; PFAM: cobalbumin biosynthesis protein; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: Adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase
YP_004051953.1	COGs: COG2158 Uncharacterized protein containing a Zn-finger-like domain; InterPro IPR007212; KEGG: ddf:DEFDS_0185 hypothetical protein; PFAM: cysteine-rich small domain; SPTR: uncharacterized protein; PFAM: Cysteine-rich small domain
YP_004051954.1	COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR017846: IPR003200; KEGG: ddf:DEFDS_2050 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PRIAM: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; SPTR: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_004051955.1	COGs: COG0368 Cobalamin-5-phosphate synthase; InterPro IPR003805; KEGG: ddf:DEFDS_2049 adenosylcobinamide-GDP ribazoletransferase; PFAM: cobalamin-5-phosphate synthase CobS; SPTR: Cobalamin synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase
YP_004051956.1	KEGG: sul:SYO3AOP1_0737 TonB family protein; SPTR: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_004051957.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004051958.1	COGs: COG0482 tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR004506; KEGG: ddf:DEFDS_1156 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; SPTR: tRNA-specific 2-thiouridylase mnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_004051959.1	COGs: COG1606 ATP-utilizing protein of the PP-loop superfamily; KEGG: ddf:DEFDS_1637 hypothetical protein; SPTR: uncharacterized protein; PFAM: NAD synthase; TIGRFAM: conserved hypothetical protein TIGR00268
YP_004051960.1	COGs: COG1251 NAD(P)H-nitrite reductase; InterPro IPR013027: IPR000103: IPR004099; KEGG: ddf:DEFDS_1684 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_004051961.1	COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593: IPR003439: IPR017871; KEGG: pmx:PERMA_0680 macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Macrolide export ATP-binding/permease protein MacB; PFAM: ABC transporter
YP_004051962.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: pmx:PERMA_0681 secretion protein HlyD; PFAM: secretion protein HlyD family protein; SPTR: Secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_004051963.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: pmx:PERMA_1479 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: Outer membrane efflux protein; PFAM: Outer membrane efflux protein
YP_004051964.1	COGs: COG1235 Metal-dependent hydrolase of the beta-lactamase superfamily I; KEGG: ddf:DEFDS_2161 hypothetical protein; SPTR: uncharacterized protein; PFAM: Metallo-beta-lactamase superfamily
YP_004051965.1	InterPro IPR001647; KEGG: ddf:DEFDS_0614 TetR/AcrR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Transcriptional regulator, TetR/AcrR family; PFAM: Bacterial regulatory proteins, tetR family
YP_004051966.1	COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: ddf:DEFDS_0615 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: uncharacterized protein; PFAM: Outer membrane efflux protein
YP_004051967.1	COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR003997: IPR006143; KEGG: ddf:DEFDS_0616 multidrug-efflux transporter MFP family; PFAM: secretion protein HlyD family protein; SPTR: Multidrug-efflux transporter, MFP family; PFAM: HlyD family secretion protein
YP_004051968.1	COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR011701; KEGG: ddf:DEFDS_0617 multidrug-efflux transporter MFS family; PFAM: major facilitator superfamily MFS_1; SPTR: Multidrug-efflux transporter, MFS family; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_004051969.1	KEGG: gur:Gura_3461 hypothetical protein; SPTR: uncharacterized protein
YP_004051970.1	COGs: COG3852 Signal transduction histidine kinase nitrogen specific; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: ddf:DEFDS_2112 two-component system, NtrC family, sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Two-component system, NtrC family, sensor histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004051971.1	COGs: COG0450 Peroxiredoxin; InterPro IPR017936: IPR000866: IPR019479; KEGG: cts:Ctha_1656 peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin-like; PRIAM: Peroxiredoxin; SPTR: Peroxiredoxin; PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family
YP_004051972.1	COGs: COG1433 conserved hypothetical protein; InterPro IPR003731; KEGG: ccb:Clocel_1085 dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; SPTR: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; PFAM: Dinitrogenase iron-molybdenum cofactor
YP_004051973.1	COGs: COG1342 DNA-binding protein; InterPro IPR002852; KEGG: plt:Plut_0906 hypothetical protein; PFAM: protein of unknown function DUF134; SPTR: uncharacterized protein; PFAM: Protein of unknown function DUF134
YP_004051974.1	COGs: COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system; InterPro IPR000014: IPR001638: IPR003661: IPR003594: IPR 001789: IPR005467: IPR004358: IPR013656: IPR013767; KEGG: ddf:DEFDS_1294 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; extracellular solute-binding protein family 3; PAS domain containing protein; histidine kinase A domain protein; response regulator receiver; SPTR: uncharacterized protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Bacterial extracellular solute-binding proteins, family 3; PAS fold; TIGRFAM: PAS domain S-box
YP_004051975.1	COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814; KEGG: mar:MAE_38610 McyE protein; PFAM: aminotransferase class-III; SPTR: Amino acid adenylation; PFAM: Aminotransferase class-III
YP_004051976.1	COGs: COG0011 conserved hypothetical protein; InterPro IPR002767; KEGG: saf:SULAZ_1255 hypothetical protein; PFAM: protein of unknown function DUF77; SPTR: uncharacterized protein; PFAM: Domain of unknown function DUF77; TIGRFAM: uncharacterized protein, MTH1187 family
YP_004051977.1	COGs: COG2378 transcriptional regulator protein; KEGG: pca:Pcar_0955 transcriptional regulator; SPTR: uncharacterized protein
YP_004051978.1	InterPro IPR014905; KEGG: dar:Daro_0502 hypothetical protein; PFAM: HIRAN; SPTR: uncharacterized protein; PFAM: HIRAN domain
YP_004051979.1	COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR010156: IPR002743; KEGG: tye:THEYE_A2043 CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; SPTR: CRISPR-associated protein Cas6; TIGRFAM: CRISPR-associated protein Cas6; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6
YP_004051980.1	KEGG: ate:Athe_0122 CRISPR-associated CXXC_CXXC protein Cst1; SPTR: uncharacterized protein
YP_004051981.1	InterPro IPR010154; KEGG: tpt:Tpet_1086 CRISPR-associated autoregulator DevR family protein protein; SPTR: CRISPR-associated autoregulator DevR family; TIGRFAM: CRISPR-associated autoregulator DevR family; PFAM: CRISPR-associated negative autoregulator DevR/Csa2; TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family
YP_004051982.1	InterPro IPR013422; KEGG: amt:Amet_2192 CRISPR-associated Cas5 family protein; SPTR: CRISPR-associated protein Cas5; TIGRFAM: CRISPR-associated protein Cas5; TIGRFAM: CRISPR-associated protein Cas5, N-terminal domain
YP_004051983.1	COGs: COG1203 helicase; InterPro IPR006483: IPR006474: IPR014001: IPR001650: IPR 014021; KEGG: pmx:PERMA_1338 crispr-associated helicase Cas3; SMART: DEAD-like helicase; helicase domain protein; SPTR: CRISPR-associated helicase Cas3; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated endonuclease Cas3-HD
YP_004051984.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: ddf:DEFDS_P121 transposase; PFAM: transposase mutator type; SPTR: Transposase; PFAM: Transposase, Mutator family
YP_004051985.1	COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019858: IPR002729; KEGG: tye:THEYE_A2036 CRISPR-associated protein Cas1, HMARI/TNEAP subtype; PFAM: protein of unknown function DUF48; SPTR: CRISPR-associated protein Cas1, HMARI/TNEAP subtype; TIGRFAM: CRISPR-associated protein Cas1; manually curated; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype; CRISPR-associated endonuclease Cas1
YP_004051986.1	COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: tye:THEYE_A2034 CRISPR-associated protein Cas2; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR-associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2
YP_004051987.1	KEGG: rce:RC1_1125 hypothetical protein; SPTR: uncharacterized protein
YP_004051989.1	KEGG: bpf:BpOF4_04430 TP901 family phage tail tape measure protein; SPTR: TP901 family phage tail tape measure protein
YP_004051990.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_1269 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004051991.1	KEGG: dps:DP0875 hypothetical protein; SPTR: uncharacterized protein; PFAM: Aminotransferase class IV
YP_004051992.1	COGs: COG0147 Anthranilate/para-aminobenzoate synthase component I; InterPro IPR019999: IPR015890; KEGG: ddf:DEFDS_1304 para-aminobenzoate synthase component I; PFAM: Chorismate binding-like; SPTR: Para-aminobenzoate synthase component I; PFAM: chorismate binding enzyme
YP_004051993.1	KEGG: ddf:DEFDS_1297 hypothetical protein; SPTR: uncharacterized protein
YP_004051994.1	InterPro IPR000086; KEGG: ddf:DEFDS_2172 phosphohydrolase MutT/NUDIX family; PFAM: NUDIX hydrolase; SPTR: Phosphohydrolase, MutT/NUDIX family; PFAM: NUDIX domain
YP_004051995.1	KEGG: ddf:DEFDS_2171 hypothetical protein; SPTR: uncharacterized protein
YP_004051996.1	COGs: COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain; InterPro IPR011551: IPR004518; KEGG: ddf:DEFDS_1789 MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; SPTR: MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_004051997.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003594: IPR005467: IPR004358; KEGG: glo:Glov_1550 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Multi-sensor hybrid histidine kinase; PFAM: Cache domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_004051998.1	COGs: COG0191 Fructose/tagatose bisphosphate aldolase; InterPro IPR000771: IPR011289; KEGG: ddf:DEFDS_0062 fructose-bisphosphate aldolase class II; PFAM: ketose-bisphosphate aldolase class-II; PRIAM: Fructose-bisphosphate aldolase; SPTR: Fructose-bisphosphate aldolase, class II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: Fructose-bisphosphate aldolase class-II; TIGRFAM: ketose-bisphosphate aldolases; fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist
YP_004051999.1	COGs: COG0182 translation initiation factor 2B subunit eIF-2B alpha/beta/delta family; InterPro IPR005251: IPR011559: IPR000649; KEGG: csc:Csac_1923 aIF-2BI family translation initiation factor; PFAM: initiation factor 2B related; PRIAM: S-methyl-5-thioribose-1-phosphate isomerase; SPTR: Methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_004052000.1	COGs: COG0655 Multimeric flavodoxin WrbA; InterPro IPR005025; KEGG: ddf:DEFDS_0060 hypothetical protein; PFAM: NADPH-dependent FMN reductase; SPTR: uncharacterized protein; PFAM: NADPH-dependent FMN reductase
YP_004052001.1	COGs: COG1514 2'-5' RNA ligase; InterPro IPR004175: IPR014051; KEGG: bpo:BP951000_1827 2-5 RNA ligase LigT; PFAM: Phosphoesterase HXTX; SPTR: 2-5 RNA ligase, LigT; TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase family; TIGRFAM: 2'-5' RNA ligase
YP_004052002.1	COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR008135: IPR008136: IPR001453; KEGG: ddf:DEFDS_0040 competence damage-inducible protein A; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: Competence damage-inducible protein A; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain
YP_004052003.1	COGs: COG1267 Phosphatidylglycerophosphatase A and related protein; InterPro IPR007686; KEGG: ddf:DEFDS_0041 phosphatidylglycerophosphatase; PFAM: phosphatidylglycerophosphatase A; SPTR: Phosphatidylglycerophosphatase; PFAM: Phosphatidylglycerophosphatase A
YP_004052004.1	COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; InterPro IPR006063: IPR006062; KEGG: dap:Dacet_2795 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; SPTR:1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_004052005.1	COGs: COG0118 Glutamine amidotransferase; InterPro IPR010139: IPR016226: IPR017926: IPR000991; KEGG: ddf:DEFDS_0043 amidotransferase HisH; PFAM: glutamine amidotransferase class-I; SPTR: Amidotransferase HisH; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_004052006.1	COGs: COG0131 Imidazoleglycerol-phosphate dehydratase; InterPro IPR000807: IPR020565; KEGG: dap:Dacet_2797 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; PRIAM: Imidazoleglycerol-phosphate dehydratase; SPTR: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_004052007.1	KEGG: ddf:DEFDS_0045 hypothetical protein; SPTR: uncharacterized protein
YP_004052008.1	COGs: COG0653 Preprotein translocase subunit SecA (ATPase RNA helicase); InterPro IPR000185: IPR014018: IPR011115: IPR011130: IPR 011116: IPR004027; KEGG: ddf:DEFDS_0046 preprotein translocase subunit A; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; SecA Wing and Scaffold; SEC-C motif domain protein; SPTR: Protein translocase subunit secA; TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_004052009.1	COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181; KEGG: ddf:DEFDS_0269 formylmethionine deformylase; PFAM: formylmethionine deformylase; SPTR: Peptide deformylase; TIGRFAM: peptide deformylase; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_004052010.1	COGs: COG2033 Desulfoferrodoxin; InterPro IPR002742; KEGG: ddf:DEFDS_1019 superoxide reductase; PFAM: Desulfoferrodoxin ferrous iron-binding region; PRIAM: Superoxide reductase; SPTR: Superoxide reductase; PFAM: Desulfoferrodoxin; TIGRFAM: desulfoferrodoxin ferrous iron-binding domain
YP_004052011.1	KEGG: mmx:MmarC6_1782 TPR repeat-containing protein; SPTR: uncharacterized protein
YP_004052012.1	KEGG: cbt:CLH_2069 hypothetical ATP-dependent helicase; SPTR: Hypothetical ATP-dependent helicase
YP_004052013.1	KEGG: tye:THEYE_A1805 ChrB domain protein; SPTR: ChrB domain protein
YP_004052014.1	InterPro IPR011701; KEGG: tye:THEYE_A1806 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: Conserved protein; PFAM: Major Facilitator Superfamily
YP_004052015.1	KEGG: cbt:CLH_2069 hypothetical ATP-dependent helicase; SPTR: Hypothetical ATP-dependent helicase
YP_004052017.1	KEGG: tme:Tmel_0405 type I restriction-modification system, M subunit; SPTR: Type I restriction-modification system, M subunit
YP_004052018.1	KEGG: bdu:BDU_2025 bdr protein; SPTR: Bdr protein
YP_004052019.1	InterPro IPR018631: IPR012547; KEGG: hya:HY04AAS1_0957 protein of unknown function DUF1703; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: ATPase AAA-like protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004052020.1	COGs: COG1089 GDP-D-mannose dehydratase; InterPro IPR006368: IPR020904: IPR001509; KEGG: saf:SULAZ_1202 GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase
YP_004052021.1	COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: saf:SULAZ_1203 GDP-L-fucose synthetase (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase); PFAM: NAD-dependent epimerase/dehydratase; SPTR: GDP-L-fucose synthetase (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase); PFAM: NAD dependent epimerase/dehydratase family
YP_004052022.1	COGs: COG0223 Methionyl-tRNA formyltransferase; InterPro IPR002376; KEGG: aar:Acear_0675 formyl transferase domain protein; PFAM: formyl transferase domain protein; SPTR: Formyl transferase domain protein; PFAM: Formyl transferase
YP_004052023.1	COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: mth:MTH334 perosamine synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Perosamine synthetase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family
YP_004052024.1	InterPro IPR013216; KEGG: gur:Gura_3810 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004052025.1	COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: cha:CHAB381_0962 virulence factor MviN family protein; PFAM: polysaccharide biosynthesis protein; SPTR: Virulence factor mvin superfamily; PFAM: Polysaccharide biosynthesis protein
YP_004052026.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: glo:Glov_1956 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: uncharacterized protein; PFAM: Glycosyl transferases group 1
YP_004052027.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR005479: IPR001173; KEGG: tye:THEYE_A0487 cell wall biogenesis glycosyltransferase; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase involved in cell wall biogenesis; PFAM: Glycosyl transferase family 2
YP_004052028.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: syn:slr1076 hypothetical protein; PFAM: glycosyl transferase group 1; SPTR: Slr1076 protein; PFAM: Glycosyl transferases group 1
YP_004052029.1	KEGG: zin:ZICARI_096 NADH:ubiquinone oxidoreductase I, membrane subunit N; SPTR: Secreted polysaccharide polymerase
YP_004052030.1	COGs: COG3328 Transposase and inactivated derivatives; InterPro IPR001207; KEGG: ddf:DEFDS_P121 transposase; PFAM: transposase mutator type; SPTR: Transposase; PFAM: Transposase, Mutator family
YP_004052032.1	KEGG: cyc:PCC7424_4811 phycobilisome protein; SPTR: Phycobilisome protein
YP_004052033.1	KEGG: ddi:DDB_G0290323 hypothetical protein; SPTR: uncharacterized protein
YP_004052034.1	COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: sli:Slin_2586 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1
YP_004052035.1	COGs: COG0110 acetyltransferase (isoleucine patch superfamily); InterPro IPR001451; KEGG: dfe:Dfer_0251 colanic acid biosynthesis acetyltransferase WcaF; SPTR: acetyltransferase-like protein
YP_004052036.1	COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: dba:Dbac_2545 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2
YP_004052037.1	COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: ddf:DEFDS_0384 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4
YP_004052038.1	COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754; KEGG: ddf:DEFDS_0811 uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen III synthase HEM4; SPTR: Uroporphyrinogen-III synthase; PFAM: Uroporphyrinogen-III synthase HemD
YP_004052039.1	COGs: COG0181 Porphobilinogen deaminase; InterPro IPR000860; KEGG: ddf:DEFDS_0810 porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; SPTR: Porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_004052040.1	COGs: COG0373 Glutamyl-tRNA reductase; InterPro IPR000343: IPR015895: IPR006151: IPR015896; KEGG: ddf:DEFDS_0809 glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; SPTR: Glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_004052041.1	InterPro IPR002541; KEGG: ddf:DEFDS_0808 cytochrome c assembly protein; PFAM: cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein
YP_004052042.1	COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: ddf:DEFDS_0807 multidrug resistance protein, MATE family; PFAM: multi antimicrobial extrusion protein MatE; SPTR: Multidrug resistance protein, MATE family; TIGRFAM: MATE efflux family protein; PFAM: MatE; TIGRFAM: efflux protein, MATE family
YP_004052043.1	COGs: COG4866 conserved hypothetical protein; KEGG: ddf:DEFDS_0806 hypothetical protein; SPTR: uncharacterized protein; PFAM: Uncharacterized conserved protein (DUF2156)
YP_004052044.1	COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterPro IPR019752: IPR002880; KEGG: ddf:DEFDS_0805 2-oxoacid oxidoreductase gamma-subunit alpha; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase, catalytic domain; SPTR: 2-oxoacid oxidoreductase, gamma-alpha subunit; PFAM: domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, alpha subunit
YP_004052045.1	COGs: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase beta subunit; InterPro IPR011896: IPR011766; KEGG: ddf:DEFDS_0804 2-oxoacid oxidoreductase subunit beta; PFAM: thiamine pyrophosphate TPP-binding domain-containing protein; PRIAM: 2-oxoglutarate synthase; SPTR: 2-oxoacid oxidoreductase, beta subunit; TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: Pyruvate ferredoxin oxidoreductase beta subunit C terminal; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family
YP_004052046.1	COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR000276: IPR002192; KEGG: dap:Dacet_2177 pyruvate phosphate dikinase PEP/pyruvate-binding protein; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; SPTR: Pyruvate phosphate dikinase PEP/pyruvate-binding protein; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate binding domain
YP_004052047.1	COGs: COG0033 Phosphoglucomutase; InterPro IPR005852: IPR016066: IPR005844: IPR005845: IPR 005846: IPR005843; KEGG: tra:Trad_0749 phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; SPTR: Phosphoglucomutase, alpha-D-glucose phosphate-specific; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific
YP_004052048.1	InterPro IPR013216; KEGG: ddf:DEFDS_0144 hypothetical protein; PFAM: Methyltransferase type 11; SPTR: uncharacterized protein; PFAM: Methyltransferase domain
YP_004052049.1	COGs: COG1902 NADH:flavin oxidoreductase Old Yellow Enzyme family; InterPro IPR013027: IPR000103: IPR001155; KEGG: ddf:DEFDS_1694 NADH:flavin oxidoreductase/NADH oxidase; PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: NADH:flavin oxidoreductase/NADH oxidase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family
YP_004052050.1	COGs: COG0144 tRNA and rRNA cytosine-C5-methylase; InterPro IPR001678; KEGG: ddf:DEFDS_1153 hypothetical protein; PFAM: Fmu (Sun) domain protein; SPTR: uncharacterized protein; PFAM: NOL1/NOP2/sun family
YP_004052051.1	COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: ddf:DEFDS_0180 hypothetical protein; PFAM: Uncharacterised protein family UPF0102; SPTR: UPF0102 protein DEFDS_0180; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252
YP_004052052.1	COGs: COG0164 Ribonuclease HII; InterPro IPR001352; KEGG: ddf:DEFDS_0181 ribonuclease HII; PFAM: ribonuclease HII/HIII; PRIAM: Ribonuclease H; SPTR: Ribonuclease; PFAM: Ribonuclease HII
YP_004052053.1	COGs: COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; InterPro IPR004392: IPR012202: IPR003495; KEGG: ddf:DEFDS_0182 hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; SPTR: Hydrogenase accessory protein HypB; TIGRFAM: hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB
YP_004052054.1	COGs: COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); InterPro IPR000688; KEGG: ddf:DEFDS_0183 hydrogenase expression/synthesis protein HypA; PFAM: hydrogenase expression/synthesis HypA; SPTR: Probable hydrogenase nickel incorporation protein hypA; TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase expression/synthesis hypA family; TIGRFAM: hydrogenase nickel insertion protein HypA
YP_004052055.1	COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387: IPR001478: IPR008915; KEGG: ddf:DEFDS_0124 membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Membrane-associated zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_004052056.1	COGs: COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro IPR003821: IPR013512: IPR013644; KEGG: ddf:DEFDS_0123 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain-containing protein; PRIAM: 1-deoxy-D-xylulose-5-phosphate reductoisomerase; SPTR: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_004052057.1	COGs: COG0575 CDP-diglyceride synthetase; InterPro IPR000374; KEGG: ddf:DEFDS_0122 phosphatidate cytidylyltransferase; PFAM: phosphatidate cytidylyltransferase; SPTR: Phosphatidate cytidylyltransferase; PFAM: Cytidylyltransferase family
YP_004052058.1	COGs: COG0020 Undecaprenyl pyrophosphate synthase; InterPro IPR001441: IPR018520; KEGG: ddf:DEFDS_0121 undecaprenyl pyrophosphate synthetase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; PRIAM: Di-trans,poly-cis-decaprenylcistransferase; SPTR: Undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_004052059.1	COGs: COG0233 Ribosome recycling factor; InterPro IPR002661: IPR015998; KEGG: ddf:DEFDS_0120 ribosome recycling factor Frr; PFAM: ribosome recycling factor; SPTR: Ribosome-recycling factor; TIGRFAM: ribosome recycling factor; PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_004052060.1	COGs: COG0528 Uridylate kinase; InterPro IPR015963: IPR011817: IPR001048; KEGG: ddf:DEFDS_0119 uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; SPTR: Uridylate kinase; TIGRFAM: uridylate kinase; PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_004052061.1	KEGG: ddf:DEFDS_0118 hypothetical protein; SPTR: uncharacterized protein
YP_004052062.1	COGs: COG0681 Signal peptidase I; InterPro IPR000223: IPR019757: IPR019758: IPR019759; KEGG: ddf:DEFDS_0117 signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; PRIAM: Signal peptidase I; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_004052063.1	COGs: COG0481 Membrane GTPase LepA; InterPro IPR005225: IPR006297: IPR000795: IPR004161: IPR 000640: IPR013842; KEGG: ddf:DEFDS_0116 GTP-binding protein LepA; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; SPTR: GTP-binding protein lepA; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; GTP-binding protein LepA C-terminus; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_004052064.1	COGs: COG1004 UDP-glucose 6-dehydrogenase; InterPro IPR017476: IPR001732: IPR014026: IPR014027; KEGG: ddf:DEFDS_0115 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; PRIAM: UDP-glucose 6-dehydrogenase; SPTR: UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_004052065.1	COGs: COG0541 Signal recognition particle GTPase; InterPro IPR004780: IPR003593: IPR000897: IPR013822: IPR 004125; KEGG: ddf:DEFDS_0255 signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; SPTR: Signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_004052066.1	COGs: COG0228 Ribosomal protein S16; InterPro IPR000307; KEGG: ddf:DEFDS_0254 30S ribosomal protein S16; PFAM: ribosomal protein S16; SPTR: 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_004052067.1	COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR004088: IPR020627; KEGG: ddf:DEFDS_0253 hypothetical protein; SPTR: uncharacterized protein; PFAM: KH domain
YP_004052068.1	COGs: COG0806 RimM protein required for 16S rRNA processing; InterPro IPR011961: IPR002676: IPR007903; KEGG: dap:Dacet_2279 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; SPTR: 16S rRNA processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_004052069.1	COGs: COG0336 tRNA-(guanine-N1)-methyltransferase; InterPro IPR002649: IPR016009: IPR019230; KEGG: ddf:DEFDS_0251 tRNA (guanine-N(1)-)-methyltransferase; PFAM: Protein of unknown function DUF2168; tRNA (guanine-N1-)-methyltransferase; PRIAM: tRNA (guanine-N(1)-)-methyltransferase; SPTR: tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (Guanine-1)-methyltransferase; Uncharacterized protein conserved in bacteria (DUF2168); TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_004052070.1	COGs: COG0335 Ribosomal protein L19; InterPro IPR001857: IPR018257; KEGG: dap:Dacet_2277 50S ribosomal protein L19; PFAM: ribosomal protein L19; SPTR: 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_004052071.1	COGs: COG0102 Ribosomal protein L13; InterPro IPR005823: IPR005822; KEGG: ddf:DEFDS_0249 50S ribosomal protein L13; PFAM: ribosomal protein L13; SPTR: 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_004052072.1	COGs: COG0103 Ribosomal protein S9; InterPro IPR020574: IPR000754; KEGG: ddf:DEFDS_0248 30S ribosomal protein S9; PFAM: ribosomal protein S9; SPTR: 30S ribosomal protein S9; PFAM: Ribosomal protein S9/S16
YP_004052073.1	COGs: COG2183 Transcriptional accessory protein; InterPro IPR006641: IPR003029: IPR018974; KEGG: ddf:DEFDS_0638 transcription accessory protein; PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; SPTR: Transcription accessory protein; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region
YP_004052074.1	COGs: COG1350 alternative tryptophan synthase beta-subunit (paralog of TrpB); InterPro IPR006316: IPR006653: IPR001926; KEGG: ddf:DEFDS_1396 tryptophan synthase subunit beta; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Tryptophan synthase, beta subunit; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal-phosphate dependent TrpB-like enzyme
YP_004052075.1	COGs: COG1636 conserved hypothetical protein; InterPro IPR003828; KEGG: ddf:DEFDS_1431 hypothetical protein; PFAM: protein of unknown function DUF208; SPTR: uncharacterized protein; PFAM: Uncharacterized BCR, COG1636
YP_004052076.1	COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: afu:AF0907 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: uncharacterized protein; PFAM: Major Facilitator Superfamily
YP_004052077.1	InterPro IPR018631: IPR012547; KEGG: saf:SULAZ_0529 conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: Conserved protein, with A weak D-galactarate dehydratase/altronate hydrolase domain; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004052078.1	KEGG: pfh:PFHG_02955 hypothetical protein; SPTR: tRNA dimethylallyltransferase
YP_004052079.1	COGs: COG4930 ATP-dependent Lon-type protease; InterPro IPR014061; KEGG: dma:DMR_36110 peptidase S16 family protein; SPTR: Peptidase S16 family protein; TIGRFAM: conserved hypothetical protein; conserved hypothetical protein TIGR02688
YP_004052080.1	InterPro IPR014060: IPR013973; KEGG: esi:Exig_0316 alkaline phosphatase domain-containing protein; PFAM: PglZ domain protein; SPTR: PglZ domain protein; PFAM: PglZ domain; TIGRFAM: conserved hypothetical protein TIGR02687
YP_004052081.1	KEGG: clj:CLJU_c32690 hypothetical protein; SPTR: Probable restriction enzyme
YP_004052082.1	KEGG: tva:TVAG_060420 hypothetical protein; SPTR: Ribosomal protein S5
YP_004052083.1	InterPro IPR002296: IPR002052; KEGG: gca:Galf_0887 restriction enzyme; SPTR: uncharacterized protein; PFAM: Eco57I restriction endonuclease
YP_004052084.1	KEGG: ttm:Tthe_0499 hypothetical protein; SPTR: uncharacterized protein
YP_004052085.1	InterPro IPR014858; KEGG: msi:Msm_1750 hypothetical protein; PFAM: Domain of unknown function DUF1788; SPTR: uncharacterized protein; PFAM: Domain of unknown function (DUF1788)
YP_004052086.1	InterPro IPR014948; KEGG: chy:CHY_2656 hypothetical protein; PFAM: Protein of unkown function DUF1819 inner membrane; SPTR: uncharacterized protein; PFAM: inner membrane protein (DUF1819)
YP_004052087.1	InterPro IPR018631: IPR012547; KEGG: ddf:DEFDS_0353 hypothetical protein; PFAM: ATPase AAA-like; protein of unknown function DUF1703; SPTR: uncharacterized protein; PFAM: Protein of unknown function (DUF1703); Predicted ATPase AAA
YP_004052088.1	KEGG: bpo:BP951000_0231 curli production assembly transport component CsgG; SPTR: uncharacterized protein; PFAM: Curli production assembly/transport component CsgG
YP_004052089.1	COGs: COG0459 Chaperonin GroEL (HSP60 family); InterPro IPR001844: IPR018370: IPR002423; KEGG: ddf:DEFDS_0240 chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; SPTR: 60 kDa chaperonin; TIGRFAM: chaperonin GroEL; PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_004052090.1	COGs: COG0234 Co-chaperonin GroES (HSP10); InterPro IPR001476: IPR018369: IPR020818; KEGG: ddf:DEFDS_0239 chaperonin GroES; PFAM: Chaperonin Cpn10; SPTR: 10 kDa chaperonin; PFAM: Chaperonin 10 Kd subunit
YP_004052091.1	COGs: COG0065 3-isopropylmalate dehydratase large subunit; InterPro IPR004430: IPR001030: IPR018136; KEGG: ddf:DEFDS_0238 3-isopropylmalate dehydratase large subunit; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_004052092.1	COGs: COG0066 3-isopropylmalate dehydratase small subunit; InterPro IPR004431: IPR000573; KEGG: ddf:DEFDS_0237 3-isopropylmalate dehydratase small subuni; PFAM: aconitate hydratase domain-containing protein; SPTR: 3-isopropylmalate dehydratase, small subuni; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_004052093.1	COGs: COG2862 membrane protein; InterPro IPR005134; KEGG: saf:SULAZ_1113 hypothetical protein; PFAM: Uncharacterised protein family UPF0114; SPTR: uncharacterized protein; PFAM: Uncharacterized protein family, UPF0114
YP_004052094.1	InterPro IPR002559; KEGG: sso:SSO1775 transposase ISC1359; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein; PFAM: Transposase DDE domain
YP_004052095.1	COGs: COG0261 Ribosomal protein L21; InterPro IPR001787; KEGG: ddf:DEFDS_0265 50S ribosomal protein L21; PFAM: ribosomal protein L21; SPTR: 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_004052096.1	COGs: COG0211 Ribosomal protein L27; InterPro IPR001684: IPR018261; KEGG: ddf:DEFDS_0266 50S ribosomal protein L27; PFAM: ribosomal protein L27; SPTR: 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_004052097.1	COGs: COG0536 GTPase; InterPro IPR014100: IPR005225: IPR006073: IPR006074: IPR 006169: IPR002917; KEGG: ddf:DEFDS_0267 GTP-binding protein Obg; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; SPTR: GTPase obg; TIGRFAM: GTP-binding protein Obg/CgtA; small GTP-binding protein; PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA; small GTP-binding protein domain
YP_004052098.1	COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR008275: IPR002731; KEGG: ddf:DEFDS_1233 CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: CoA-substrate-specific enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative
YP_004052099.1	COGs: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: ddf:DEFDS_1234 2-hydroxyglutaryl-CoA dehydratase D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: 2-hydroxyglutaryl-CoA dehydratase, D-component; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_004052100.1	KEGG: ddf:DEFDS_1235 hypothetical protein; SPTR: uncharacterized protein
YP_004052101.1	KEGG: mmh:Mmah_1106 hypothetical protein; SPTR: uncharacterized protein
YP_004052102.1	KEGG: tan:TA17710 hypothetical protein; SPTR: uncharacterized protein
YP_004052103.1	COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR000160: IPR001789; KEGG: ddf:DEFDS_1070 signal transduction response regulator; PFAM: GGDEF domain containing protein; response regulator receiver; PRIAM: Diguanylate kinase; SMART: GGDEF domain containing protein; response regulator receiver; SPTR: Signal transduction response regulator; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_004052104.1	COGs: COG0008 Glutamyl- and glutaminyl-tRNA synthetase; InterPro IPR004527: IPR020060: IPR001412: IPR020058; KEGG: ddf:DEFDS_1071 glutamyl-tRNA synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; SPTR: Glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_004052105.1	COGs: COG1160 GTPase; InterPro IPR005225: IPR016484: IPR006073: IPR002917; KEGG: ddf:DEFDS_1072 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein engA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; GTP-binding protein Era; small GTP-binding protein domain
YP_004052106.1	COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR001176: IPR004839; KEGG: ddf:DEFDS_0619 aspartate transaminase; PFAM: aminotransferase class I and II; SPTR: Aspartate transaminase; PFAM: Aminotransferase class I and II
YP_004052107.1	COGs: COG0659 Sulfate permease and related transporter (MFS superfamily); InterPro IPR001902: IPR002645: IPR011547; KEGG: wsu:WS0651 sulfate transporter sulfate transporter family protein; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; SPTR: SULFATE TRANSPORTER SULFATE TRANSPORTER FAMILY PROTEIN; TIGRFAM: sulfate transporter; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: anti-anti-sigma factor; high affinity sulphate transporter 1
YP_004052108.1	COGs: COG1576 conserved hypothetical protein; InterPro IPR003742; KEGG: apr:Apre_0291 protein of unknown function DUF163; PFAM: protein of unknown function DUF163; SPTR: Ribosomal RNA large subunit methyltransferase H; PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH
YP_004052109.1	COGs: COG1734 DnaK suppressor protein; InterPro IPR000962; KEGG: ddf:DEFDS_1897 DnaK suppressor protein DksA; SPTR: DnaK suppressor protein DksA; PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA
YP_004052110.1	COGs: COG0696 Phosphoglyceromutase; InterPro IPR005995: IPR018089: IPR011258: IPR006124; KEGG: ddf:DEFDS_1896 phosphoglycerate mutase; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: Metalloenzyme superfamily; BPG-independent PGAM N-terminus (iPGM_N); TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
YP_004052111.1	COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: ddf:DEFDS_0085 hypothetical protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: uncharacterized protein; PFAM: Response regulator receiver domain
YP_004052112.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003661: IPR003594: IPR005467: IPR004358; KEGG: dap:Dacet_2810 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_004052113.1	KEGG: ddf:DEFDS_0087 hypothetical protein; SPTR: uncharacterized protein
YP_004052114.1	KEGG: ddf:DEFDS_0088 hypothetical protein; SPTR: uncharacterized protein
YP_004052115.1	COGs: COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; InterPro IPR010121: IPR018274: IPR000121: IPR018040: IPR 002192: IPR008279; KEGG: ddf:DEFDS_0235 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; PEP-utilizing protein; PRIAM: Pyruvate, phosphate dikinase; SPTR: Pyruvate phosphate dikinase; TIGRFAM: pyruvate, phosphate dikinase; PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: pyruvate, phosphate dikinase
YP_004052116.1	COGs: COG0751 Glycyl-tRNA synthetase beta subunit; InterPro IPR015944: IPR006194: IPR002311: IPR008909; KEGG: ddf:DEFDS_0236 glycyl-tRNA synthetase subunit beta; PFAM: glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain protein; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit
YP_004052117.1	KEGG: tva:TVAG_465640 hypothetical protein; SPTR: Predicted protein
YP_004052118.1	COGs: COG1060 Thiamine biosynthesis protein ThiH; InterPro IPR020050: IPR005244: IPR007197; KEGG: ddf:DEFDS_0011 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: uncharacterized protein; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM domain protein, CofH subfamily; menaquinone biosynthesis protein, SCO4550 family
YP_004052119.1	COGs: COG0642 Signal transduction histidine kinase; InterPro IPR003018: IPR003661: IPR003594: IPR005467: IPR 004358; KEGG: ddf:DEFDS_0012 hypothetical protein; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase A domain protein; SPTR: uncharacterized protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain
YP_004052120.1	COGs: COG0178 Excinuclease ATPase subunit; InterPro IPR004602: IPR003593: IPR003439: IPR017871; KEGG: ddf:DEFDS_0014 excinuclease ABC subunit A; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_004052121.1	COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: ddf:DEFDS_0015 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; SPTR: N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes
YP_004052122.1	InterPro IPR002363: IPR007452; KEGG: ddf:DEFDS_0016 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: uncharacterized protein; PFAM: Family of unknown function (DUF490)
YP_004052123.1	COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184; KEGG: ddf:DEFDS_0017 hypothetical protein; PFAM: surface antigen variable number repeat-containing protein; surface antigen (D15); SPTR: uncharacterized protein; PFAM: Surface antigen variable number repeat; Surface antigen
YP_004052124.1	COGs: COG1723 conserved hypothetical protein; InterPro IPR003734; KEGG: wsu:WS1725 hypothetical protein; PFAM: protein of unknown function DUF155; SPTR: uncharacterized protein; PFAM: Uncharacterised ACR, YagE family COG1723
YP_004052125.1	COGs: COG2193 Bacterioferritin (cytochrome b1); InterPro IPR002024: IPR009040: IPR008331; KEGG: sdl:Sdel_1229 ferritin Dps family protein; PFAM: Ferritin Dps family protein; SPTR: Ferritin Dps family protein; PFAM: Ferritin-like domain; TIGRFAM: bacterioferritin