-- dump date   	20140619_013924
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_989623.1	identified by match to protein family HMM PF00665
YP_989624.1	identified by match to protein family HMM PF01527
YP_989626.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386
YP_989627.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387
YP_989628.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_989629.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_989630.1	identified by match to protein family HMM PF02321
YP_989634.1	identified by match to protein family HMM PF04008
YP_989635.1	identified by match to protein family HMM PF04073
YP_989636.1	identified by match to protein family HMM PF00324
YP_989638.1	identified by match to protein family HMM PF01694
YP_989640.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_989648.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_989649.1	identified by match to protein family HMM PF00873
YP_989650.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_989652.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_989653.1	identified by match to protein family HMM PF00400
YP_989655.1	identified by match to protein family HMM PF00589
YP_989658.1	identified by match to protein family HMM PF05344
YP_989659.1	identified by match to protein family HMM PF01527
YP_989660.1	identified by match to protein family HMM PF00665
YP_989661.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_989663.1	identified by match to protein family HMM PF00532
YP_989664.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_989665.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02254
YP_989673.1	identified by match to protein family HMM PF06983
YP_989674.1	identified by match to protein family HMM PF01544
YP_989676.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_989679.1	identified by match to protein family HMM PF07690
YP_989682.1	identified by match to protein family HMM PF01547
YP_989683.1	identified by match to protein family HMM PF00528
YP_989684.1	identified by match to protein family HMM PF00528
YP_989685.1	identified by match to protein family HMM PF00107
YP_989686.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_989687.1	identified by match to protein family HMM PF00165
YP_989688.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_989692.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768
YP_989693.1	identified by match to protein family HMM PF00905
YP_989697.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_989698.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_989699.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_989700.1	identified by match to protein family HMM PF07690
YP_989703.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_989704.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_989707.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_989713.1	identified by match to protein family HMM PF00850
YP_989714.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_989715.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_989716.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989718.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989719.1	identified by match to protein family HMM PF00106
YP_989721.1	identified by match to protein family HMM PF02515
YP_989723.1	identified by match to protein family HMM PF00107
YP_989724.1	identified by match to protein family HMM PF00465
YP_989732.1	identified by match to protein family HMM PF05650
YP_989733.1	identified by match to protein family HMM PF00691
YP_989735.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_989737.1	identified by match to protein family HMM PF03621
YP_989738.1	identified by match to protein family HMM PF07690
YP_989740.1	identified by match to protein family HMM PF01609
YP_989741.1	identified by match to protein family HMM PF01527
YP_989742.1	identified by match to protein family HMM PF00665
YP_989745.1	identified by match to protein family HMM PF02770; match to protein family HMM PF08028
YP_989747.1	identified by match to protein family HMM PF04140
YP_989752.1	identified by match to protein family HMM PF00005
YP_989753.1	identified by match to protein family HMM PF02653
YP_989754.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_989755.1	identified by match to protein family HMM PF04773
YP_989756.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_989758.1	identified by match to protein family HMM PF03640
YP_989759.1	identified by match to protein family HMM PF04264
YP_989761.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_989764.1	identified by match to protein family HMM PF00165
YP_989766.1	identified by match to protein family HMM PF01557
YP_989767.1	identified by match to protein family HMM PF02517
YP_989768.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_989770.1	identified by match to protein family HMM PF01699
YP_989772.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989774.1	identified by match to protein family HMM PF00571; match to protein family HMM PF04982
YP_989775.1	identified by match to protein family HMM PF01047
YP_989776.1	identified by match to protein family HMM PF00571; match to protein family HMM PF00654
YP_989779.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_989780.1	identified by match to protein family HMM PF01266
YP_989781.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_989783.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_989784.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01212; match to protein family HMM PF02801
YP_989785.1	identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801
YP_989787.1	identified by match to protein family HMM PF00999
YP_989788.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_989792.1	identified by match to protein family HMM PF01610
YP_989793.1	involved in polyketide synthesis
YP_989794.1	involved in polyketide production
YP_989795.1	Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics
YP_989796.1	involved in polyketide production
YP_989797.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_989798.1	identified by match to protein family HMM PF00355
YP_989799.1	identified by match to protein family HMM PF00165
YP_989801.1	identified by match to protein family HMM PF00199
YP_989803.1	identified by match to protein family HMM PF04397
YP_989804.1	identified by match to protein family HMM PF00072
YP_989805.1	identified by match to protein family HMM PF01527
YP_989806.1	identified by match to protein family HMM PF00665
YP_989807.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_989810.1	identified by match to protein family HMM PF07690
YP_989816.1	identified by match to protein family HMM PF04828
YP_989819.1	identified by match to protein family HMM PF00005
YP_989820.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_989821.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_989824.1	identified by match to protein family HMM PF00267
YP_989825.1	identified by match to protein family HMM PF07681
YP_989826.1	identified by match to protein family HMM PF00034
YP_989827.1	identified by match to protein family HMM PF00732; match to protein family HMM PF01266
YP_989832.1	identified by match to protein family HMM PF00082
YP_989834.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_989837.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_989838.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701
YP_989839.1	identified by match to protein family HMM PF05249
YP_989840.1	identified by match to protein family HMM PF05360
YP_989841.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_989842.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_989843.1	identified by match to protein family HMM PF00496
YP_989845.1	identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
YP_989849.1	identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_989851.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_989857.1	catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis
YP_989858.1	identified by match to protein family HMM PF00496
YP_989859.1	identified by match to protein family HMM PF00528
YP_989860.1	identified by match to protein family HMM PF00528
YP_989861.1	identified by match to protein family HMM PF00005
YP_989862.1	identified by match to protein family HMM PF00005
YP_989865.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989868.1	identified by match to protein family HMM PF00144
YP_989869.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_989871.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989874.1	identified by match to protein family HMM PF00267
YP_989877.1	identified by match to protein family HMM PF00756
YP_989878.1	catalyzes the formation of L-proline from L-ornithine
YP_989879.1	identified by match to protein family HMM PF02627
YP_989880.1	identified by match to protein family HMM PF00561
YP_989881.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_989883.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_989888.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_989890.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_989894.1	identified by match to protein family HMM PF00583
YP_989896.1	identified by match to protein family HMM PF00376
YP_989897.1	identified by match to protein family HMM TIGR01728
YP_989899.1	identified by match to protein family HMM PF07947
YP_989901.1	identified by match to protein family HMM PF01527
YP_989902.1	identified by match to protein family HMM PF00665
YP_989904.1	identified by match to protein family HMM PF02082
YP_989905.1	identified by match to protein family HMM PF06475
YP_989906.1	identified by match to protein family HMM PF00797
YP_989911.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_989912.1	identified by match to protein family HMM PF01037
YP_989913.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_989916.1	identified by match to protein family HMM PF00691; match to protein family HMM PF04355
YP_989917.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_989919.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_989920.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_989921.1	identified by match to protein family HMM PF00903
YP_989922.1	identified by match to protein family HMM PF00171
YP_989923.1	catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis
YP_989924.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_989925.1	identified by match to protein family HMM PF00106
YP_989926.1	identified by match to protein family HMM PF01614
YP_989927.1	identified by match to protein family HMM PF00561
YP_989928.1	identified by match to protein family HMM PF07883
YP_989929.1	member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria
YP_989930.1	identified by match to protein family HMM PF00355
YP_989932.1	identified by match to protein family HMM PF00355
YP_989933.1	identified by match to protein family HMM PF00267
YP_989934.1	identified by match to protein family HMM PF01614
YP_989935.1	identified by match to protein family HMM PF03171
YP_989936.1	identified by match to protein family HMM PF00881
YP_989937.1	identified by match to protein family HMM PF00149
YP_989939.1	identified by match to protein family HMM PF02308
YP_989940.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_989942.1	identified by match to protein family HMM PF00765
YP_989944.1	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505
YP_989945.1	identified by match to protein family HMM PF00571
YP_989947.1	identified by match to protein family HMM PF01272
YP_989948.1	identified by match to protein family HMM PF00267
YP_989951.1	identified by match to protein family HMM PF00724
YP_989952.1	identified by match to protein family HMM PF00583
YP_989953.1	identified by match to protein family HMM PF01810
YP_989954.1	identified by match to protein family HMM PF00267
YP_989955.1	identified by match to protein family HMM PF00165
YP_989957.1	identified by match to protein family HMM PF00324
YP_989958.1	identified by match to protein family HMM PF00202
YP_989959.1	identified by match to protein family HMM PF00171
YP_989961.1	identified by match to protein family HMM PF00196
YP_989963.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_989966.1	identified by match to protein family HMM PF00248
YP_989970.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_989971.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_989975.1	identified by match to protein family HMM PF01527
YP_989976.1	identified by match to protein family HMM PF00665
YP_989980.1	identified by match to protein family HMM PF02321
YP_989981.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_989985.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_989987.1	identified by match to protein family HMM PF00665
YP_989988.1	identified by match to protein family HMM PF01527
YP_989991.1	identified by match to protein family HMM PF00324
YP_989994.1	identified by match to protein family HMM PF04946
YP_989996.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_989998.1	identified by match to protein family HMM PF01596
YP_990000.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_990003.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424
YP_990004.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_990005.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_990007.1	identified by match to protein family HMM PF04951
YP_990008.1	identified by match to protein family HMM PF03576
YP_990009.1	identified by match to protein family HMM PF00528
YP_990010.1	identified by match to protein family HMM PF00528
YP_990012.1	identified by match to protein family HMM PF00496
YP_990014.1	identified by match to protein family HMM PF00005
YP_990015.1	identified by match to protein family HMM PF01112
YP_990016.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_990017.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_990018.1	identified by match to protein family HMM PF00144
YP_990021.1	identified by match to protein family HMM PF04185
YP_990025.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_990026.1	identified by match to protein family HMM PF00892
YP_990027.1	identified by match to protein family HMM PF07973
YP_990029.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_990031.1	identified by match to protein family HMM PF07045
YP_990034.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_990036.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_990037.1	identified by match to protein family HMM PF01037
YP_990040.1	identified by match to protein family HMM PF07690
YP_990041.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_990042.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_990043.1	identified by match to protein family HMM PF04909
YP_990044.1	identified by match to protein family HMM PF00149
YP_990045.1	identified by match to protein family HMM PF03150
YP_990047.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_990052.1	identified by match to protein family HMM PF00583
YP_990053.1	identified by match to protein family HMM PF04143
YP_990054.1	identified by match to protein family HMM PF04143
YP_990055.1	identified by match to protein family HMM PF01022
YP_990057.1	identified by match to protein family HMM PF01292
YP_990058.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_990060.1	identified by match to protein family HMM PF01381
YP_990061.1	identified by match to protein family HMM PF00132
YP_990062.1	identified by match to protein family HMM PF00581
YP_990064.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_990066.1	identified by match to protein family HMM PF00529
YP_990067.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_990069.1	identified by match to protein family HMM TIGR01556
YP_990070.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_990074.1	identified by match to protein family HMM PF00665
YP_990075.1	identified by match to protein family HMM PF01527
YP_990076.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_990077.1	catalyzes the formation of betaine from betaine aldehyde
YP_990078.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_990080.1	identified by match to protein family HMM PF05853
YP_990081.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_990082.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM TIGR00229
YP_990083.1	identified by match to protein family HMM PF00072
YP_990084.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM TIGR00229
YP_990085.1	identified by match to protein family HMM PF02566
YP_990086.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_990092.1	identified by match to protein family HMM PF00313
YP_990097.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526
YP_990099.1	identified by match to protein family HMM PF01527
YP_990100.1	identified by match to protein family HMM PF00665
YP_990102.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_990103.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_990104.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990108.1	identified by match to protein family HMM PF07883
YP_990114.1	identified by match to protein family HMM PF00535; match to protein family HMM PF07238
YP_990115.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_990116.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_990118.1	activates fatty acids by binding to coenzyme A
YP_990119.1	identified by match to protein family HMM PF00027
YP_990124.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_990125.1	identified by match to protein family HMM PF00106
YP_990127.1	identified by match to protein family HMM PF01594
YP_990129.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_990132.1	identified by match to protein family HMM PF00724
YP_990134.1	identified by match to protein family HMM PF01965
YP_990136.1	identified by match to protein family HMM PF00440
YP_990138.1	identified by match to protein family HMM PF05231
YP_990139.1	identified by match to protein family HMM PF01527
YP_990140.1	identified by match to protein family HMM PF00665
YP_990142.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05662
YP_990148.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_990149.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_990150.1	identified by match to protein family HMM PF01039
YP_990151.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_990152.1	identified by match to protein family HMM PF00440
YP_990157.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_990159.1	identified by match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784
YP_990161.1	identified by match to protein family HMM PF02373
YP_990164.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_990165.1	identified by match to protein family HMM PF00583
YP_990167.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_990168.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_990173.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00970; match to protein family HMM PF03929
YP_990174.1	identified by match to protein family HMM PF02424
YP_990175.1	identified by match to protein family HMM PF00171
YP_990176.1	identified by match to protein family HMM PF00155
YP_990179.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990180.1	identified by match to protein family HMM TIGR01552
YP_990181.1	identified by match to protein family HMM PF01266
YP_990182.1	identified by match to protein family HMM PF00440
YP_990186.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_990188.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409
YP_990190.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_990191.1	identified by match to protein family HMM PF00392
YP_990192.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_990193.1	identified by match to protein family HMM PF00107
YP_990195.1	identified by match to protein family HMM PF00892
YP_990196.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_990198.1	identified by match to protein family HMM PF06792
YP_990201.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376
YP_990202.1	identified by match to protein family HMM PF03781
YP_990203.1	identified by match to protein family HMM PF02630
YP_990205.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_990209.1	identified by match to protein family HMM PF06812
YP_990210.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_990211.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_990212.1	identified by match to protein family HMM PF05591
YP_990213.1	identified by match to protein family HMM PF05943
YP_990214.1	identified by match to protein family HMM PF05638
YP_990215.1	identified by match to protein family HMM PF07025
YP_990216.1	identified by match to protein family HMM PF05947
YP_990217.1	identified by match to protein family HMM PF06996
YP_990218.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_990219.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_990220.1	identified by match to protein family HMM PF00805
YP_990221.1	identified by match to protein family HMM PF00805
YP_990225.1	identified by match to protein family HMM PF05936
YP_990236.1	identified by match to protein family HMM PF01527
YP_990237.1	identified by match to protein family HMM PF00665
YP_990239.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_990240.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288
YP_990241.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_990242.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_990244.1	identified by match to protein family HMM TIGR02155
YP_990245.1	identified by match to protein family HMM PF06725
YP_990246.1	identified by match to protein family HMM PF03562
YP_990247.1	protein associated with Co2+ and Mg2+ efflux
YP_990248.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_990249.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_990250.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_990251.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_990252.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_990253.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_990254.1	identified by match to protein family HMM PF01928
YP_990255.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_990256.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_990257.1	identified by match to protein family HMM PF05299
YP_990259.1	identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_990263.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_990264.1	identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957
YP_990266.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773
YP_990271.1	identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409
YP_990274.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_990275.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_990276.1	identified by match to protein family HMM PF00857
YP_990277.1	identified by match to protein family HMM PF00557
YP_990281.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_990282.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_990283.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_990284.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365
YP_990285.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_990286.1	identified by match to protein family HMM PF02900
YP_990287.1	identified by match to protein family HMM PF00324
YP_990289.1	identified by match to protein family HMM PF01527
YP_990290.1	identified by match to protein family HMM PF00665
YP_990292.1	identified by match to protein family HMM PF07859
YP_990294.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_990295.1	identified by match to protein family HMM PF05853
YP_990296.1	identified by match to protein family HMM PF04069
YP_990297.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_990298.1	identified by match to protein family HMM PF07504
YP_990299.1	identified by match to protein family HMM PF01546; match to protein family HMM PF04389
YP_990300.1	identified by match to protein family HMM PF00267
YP_990301.1	identified by match to protein family HMM PF04069
YP_990302.1	identified by match to protein family HMM PF00884
YP_990303.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990304.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_990305.1	identified by match to protein family HMM PF00324
YP_990306.1	identified by match to protein family HMM PF04069
YP_990307.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_990308.1	identified by match to protein family HMM PF00355
YP_990310.1	identified by match to protein family HMM PF00766
YP_990311.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_990312.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_990313.1	identified by match to protein family HMM PF02830
YP_990314.1	identified by match to protein family HMM PF01244
YP_990315.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_990316.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_990317.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02819
YP_990318.1	identified by match to protein family HMM PF00532
YP_990319.1	identified by match to protein family HMM PF02435
YP_990320.1	identified by match to protein family HMM PF00251
YP_990322.1	identified by match to protein family HMM PF00529
YP_990323.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_990325.1	identified by match to protein family HMM TIGR01556
YP_990326.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_990335.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_990337.1	identified by match to protein family HMM PF00691
YP_990338.1	identified by match to protein family HMM PF05936
YP_990339.1	identified by match to protein family HMM PF05936
YP_990344.1	identified by match to protein family HMM PF00805
YP_990345.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_990346.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_990347.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_990350.1	identified by match to protein family HMM PF05947
YP_990352.1	identified by match to protein family HMM PF05638
YP_990353.1	identified by match to protein family HMM PF05943
YP_990354.1	identified by match to protein family HMM PF06812
YP_990355.1	identified by match to protein family HMM PF00665
YP_990356.1	identified by match to protein family HMM PF01527
YP_990357.1	identified by match to protein family HMM PF02550
YP_990358.1	identified by match to protein family HMM PF01066
YP_990359.1	identified by match to protein family HMM PF03171
YP_990362.1	identified by match to protein family HMM TIGR02320
YP_990363.1	identified by match to protein family HMM PF02775
YP_990364.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_990365.1	identified by match to protein family HMM PF01965
YP_990366.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_990369.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_990370.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_990371.1	identified by match to protein family HMM PF01841
YP_990372.1	identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174
YP_990374.1	identified by match to protein family HMM PF01841
YP_990375.1	identified by match to protein family HMM PF01841
YP_990376.1	identified by match to protein family HMM PF04168
YP_990377.1	identified by match to protein family HMM PF04169; match to protein family HMM PF04174
YP_990379.1	identified by match to protein family HMM PF00881
YP_990381.1	identified by match to protein family HMM PF03067
YP_990383.1	identified by match to protein family HMM PF00578
YP_990384.1	identified by match to protein family HMM PF01527
YP_990385.1	identified by match to protein family HMM PF00665
YP_990386.1	identified by match to protein family HMM PF00474
YP_990388.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_990390.1	identified by match to protein family HMM PF00892
YP_990391.1	identified by match to protein family HMM PF00892
YP_990392.1	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645
YP_990393.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_990395.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_990396.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_990397.1	identified by match to protein family HMM PF04324
YP_990398.1	identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352
YP_990399.1	identified by match to protein family HMM PF01618
YP_990400.1	identified by match to protein family HMM PF02472
YP_990401.1	identified by match to protein family HMM PF01609
YP_990405.1	identified by match to protein family HMM PF00583
YP_990406.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365
YP_990407.1	identified by match to protein family HMM PF02733
YP_990408.1	identified by match to protein family HMM PF00107
YP_990409.1	identified by match to protein family HMM PF00106
YP_990410.1	identified by match to protein family HMM PF00532
YP_990411.1	identified by match to protein family HMM PF02653
YP_990412.1	identified by match to protein family HMM PF00005
YP_990413.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120
YP_990414.1	identified by match to protein family HMM PF04198
YP_990415.1	identified by match to protein family HMM PF00267
YP_990416.1	identified by match to protein family HMM TIGR00725
YP_990417.1	identified by match to protein family HMM PF00528
YP_990419.1	identified by match to protein family HMM PF00005
YP_990420.1	identified by match to protein family HMM PF00528
YP_990422.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990424.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786
YP_990425.1	identified by match to protein family HMM PF05171
YP_990426.1	identified by match to protein family HMM PF01497
YP_990428.1	identified by match to protein family HMM PF01032
YP_990430.1	with HmuTU is involved in the import of hemin
YP_990431.1	identified by match to protein family HMM PF03458
YP_990432.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_990434.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_990435.1	identified by match to protein family HMM PF01212
YP_990436.1	identified by match to protein family HMM PF01654
YP_990437.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_990443.1	identified by match to protein family HMM PF00494
YP_990446.1	identified by match to protein family HMM PF00903
YP_990448.1	identified by match to protein family HMM PF01663
YP_990450.1	identified by match to protein family HMM PF05359
YP_990451.1	identified by match to protein family HMM PF06742; match to protein family HMM PF06863
YP_990454.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_990457.1	identified by match to protein family HMM PF00583
YP_990463.1	identified by match to protein family HMM PF02308
YP_990464.1	identified by match to protein family HMM PF07221
YP_990466.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990469.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203
YP_990470.1	identified by match to protein family HMM PF04055
YP_990475.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_990476.1	identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334
YP_990477.1	Catalyzes the conversion of citrate to isocitrate
YP_990478.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_990479.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_990480.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728; match to protein family HMM TIGR02329
YP_990481.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_990486.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249
YP_990487.1	identified by match to protein family HMM PF01804
YP_990491.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990493.1	identified by match to protein family HMM PF03746
YP_990494.1	identified by match to protein family HMM PF00364
YP_990495.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_990496.1	identified by match to protein family HMM PF02682
YP_990497.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_990500.1	identified by match to protein family HMM PF00903
YP_990501.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_990502.1	identified by match to protein family HMM PF02525
YP_990503.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990510.1	identified by match to protein family HMM PF00805
YP_990511.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_990512.2	identified by match to protein family HMM PF06812
YP_990513.1	identified by match to protein family HMM PF06996
YP_990514.1	identified by match to protein family HMM PF05947
YP_990515.1	identified by match to protein family HMM PF07025
YP_990516.1	identified by match to protein family HMM PF07024
YP_990518.1	identified by match to protein family HMM PF02861
YP_990519.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_990520.1	identified by match to protein family HMM PF05591
YP_990521.1	identified by match to protein family HMM PF05943
YP_990522.1	identified by match to protein family HMM PF05638
YP_990525.1	identified by match to protein family HMM PF05936
YP_990526.1	identified by match to protein family HMM PF00691
YP_990527.1	identified by match to protein family HMM PF06761
YP_990528.1	identified by match to protein family HMM PF06744
YP_990531.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990533.1	identified by match to protein family HMM PF02900
YP_990534.1	identified by match to protein family HMM PF00107
YP_990535.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_990536.1	identified by match to protein family HMM PF03241
YP_990537.1	identified by match to protein family HMM PF02668
YP_990538.1	identified by match to protein family HMM PF05141
YP_990540.1	identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180
YP_990545.1	identified by match to protein family HMM PF00106
YP_990546.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990547.1	identified by match to protein family HMM PF01266
YP_990548.1	identified by match to protein family HMM PF00497
YP_990553.1	identified by match to protein family HMM PF00487
YP_990556.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990557.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_990560.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_990562.1	identified by match to protein family HMM PF01527
YP_990563.1	identified by match to protein family HMM PF00665
YP_990565.1	identified by match to protein family HMM PF02515
YP_990566.1	identified by match to protein family HMM PF01614
YP_990567.1	identified by match to protein family HMM PF03328
YP_990568.1	identified by match to protein family HMM PF00267
YP_990569.1	identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409
YP_990572.1	identified by match to protein family HMM TIGR00688
YP_990573.1	identified by match to protein family HMM PF00708
YP_990574.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_990577.1	identified by match to protein family HMM PF00535
YP_990579.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_990580.1	identified by match to protein family HMM PF04055
YP_990584.1	identified by match to protein family HMM PF00202
YP_990587.1	identified by match to protein family HMM PF01609
YP_990590.1	identified by match to protein family HMM PF00106
YP_990595.1	identified by match to protein family HMM PF00106
YP_990597.1	identified by match to protein family HMM PF00534
YP_990598.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_990599.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_990602.1	identified by match to protein family HMM PF00535
YP_990603.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_990605.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_990608.1	identified by match to protein family HMM PF01075
YP_990609.1	identified by match to protein family HMM PF00535
YP_990610.1	identified by match to protein family HMM PF02543
YP_990611.1	identified by match to protein family HMM PF01075
YP_990612.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_990613.1	identified by match to protein family HMM PF00106
YP_990615.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664
YP_990616.1	identified by match to protein family HMM PF04972
YP_990617.1	identified by match to protein family HMM PF02666
YP_990618.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_990621.1	identified by match to protein family HMM PF03446
YP_990624.1	identified by match to protein family HMM PF01648
YP_990626.1	identified by match to protein family HMM PF07690
YP_990628.1	identified by match to protein family HMM PF01613
YP_990632.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_990633.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_990634.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_990635.1	identified by match to protein family HMM PF00676
YP_990641.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990644.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00732
YP_990645.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992
YP_990646.1	identified by match to protein family HMM PF01258
YP_990649.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_990650.1	class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides
YP_990654.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_990656.1	identified by match to protein family HMM PF00571
YP_990658.1	identified by match to protein family HMM PF00011
YP_990660.1	identified by match to protein family HMM PF00501
YP_990662.1	identified by match to protein family HMM PF00196
YP_990664.1	identified by match to protein family HMM PF00107
YP_990665.1	identified by match to protein family HMM PF02668
YP_990666.1	identified by match to protein family HMM PF05853
YP_990667.1	identified by match to protein family HMM PF07690
YP_990668.1	identified by match to protein family HMM PF06821
YP_990670.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_990671.1	identified by match to protein family HMM PF00037
YP_990675.1	identified by match to protein family HMM PF01522
YP_990679.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_990681.1	identified by match to protein family HMM PF00085
YP_990684.1	identified by match to protein family HMM PF00267
YP_990686.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_990691.1	identified by match to protein family HMM PF00583
YP_990692.1	identified by match to protein family HMM PF00583
YP_990694.1	identified by match to protein family HMM PF01523
YP_990698.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_990699.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_990700.1	identified by match to protein family HMM PF01610
YP_990701.1	identified by match to protein family HMM PF01609
YP_990702.1	identified by match to protein family HMM PF05494
YP_990705.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_990706.1	identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819
YP_990707.1	identified by match to protein family HMM PF01648
YP_990711.1	identified by match to protein family HMM PF02687
YP_990712.1	identified by match to protein family HMM PF00005
YP_990713.1	identified by match to protein family HMM PF00743
YP_990714.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00106
YP_990715.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801
YP_990716.1	identified by match to protein family HMM PF00698
YP_990719.1	identified by match to protein family HMM PF04333
YP_990720.1	identified by match to protein family HMM PF02627
YP_990721.1	identified by match to protein family HMM PF00202
YP_990722.1	identified by match to protein family HMM PF03417
YP_990723.1	similar to ATP-binding component of ABC transporters
YP_990724.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_990725.1	similar to periplasmic-binding component of ABC transporters
YP_990728.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787
YP_990730.1	identified by match to protein family HMM PF00494
YP_990732.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_990733.1	identified by match to protein family HMM PF04509
YP_990734.1	identified by match to protein family HMM PF00072
YP_990736.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_990737.1	identified by match to protein family HMM PF03358
YP_990739.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_990741.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_990743.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_990747.1	identified by match to protein family HMM PF00589
YP_990749.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_990750.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_990751.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_990753.1	identified by match to protein family HMM PF04264
YP_990755.1	identified by match to protein family HMM PF00440
YP_990756.1	identified by match to protein family HMM PF07080
YP_990757.1	identified by match to protein family HMM PF04952
YP_990758.1	identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089
YP_990759.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990761.1	identified by match to protein family HMM PF04140
YP_990763.1	identified by match to protein family HMM PF02798
YP_990765.1	identified by match to protein family HMM PF01734
YP_990766.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_990767.1	converts acetoacetate to acetone and carbon dioxide
YP_990768.1	identified by match to protein family HMM PF01569
YP_990772.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_990773.1	identified by match to protein family HMM PF03551
YP_990775.1	identified by match to protein family HMM PF00067
YP_990777.1	identified by match to protein family HMM PF01261; match to protein family HMM PF05114
YP_990779.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_990781.1	identified by match to protein family HMM PF01810
YP_990782.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_990783.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_990784.1	identified by match to protein family HMM PF00582
YP_990788.1	identified by match to protein family HMM PF00171
YP_990789.1	identified by match to protein family HMM PF03758
YP_990793.1	identified by match to protein family HMM PF00132
YP_990795.1	identified by match to protein family HMM PF00106
YP_990796.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_990797.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990798.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_990799.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_990800.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_990801.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_990802.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427
YP_990803.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425
YP_990804.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_990806.1	identified by match to protein family HMM PF01810
YP_990810.1	identified by match to protein family HMM PF02417
YP_990811.1	identified by match to protein family HMM PF02417
YP_990816.1	member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_990817.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_990824.1	identified by match to protein family HMM PF00816
YP_990827.1	identified by match to protein family HMM PF00083
YP_990829.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_990830.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_990835.1	identified by match to protein family HMM PF00165
YP_990838.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506
YP_990841.1	identified by match to protein family HMM PF01527
YP_990842.1	identified by match to protein family HMM PF00665
YP_990843.1	identified by match to protein family HMM PF02706
YP_990851.1	identified by match to protein family HMM PF00082
YP_990855.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_990858.1	identified by match to protein family HMM PF00561
YP_990859.1	identified by match to protein family HMM PF01266
YP_990860.1	identified by match to protein family HMM PF00106
YP_990861.1	identified by match to protein family HMM PF00440
YP_990862.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990863.1	identified by match to protein family HMM PF00665
YP_990864.1	identified by match to protein family HMM PF01527
YP_990865.1	identified by match to protein family HMM PF00043; match to protein family HMM PF00462; match to protein family HMM PF02798
YP_990867.1	identified by match to protein family HMM PF01243
YP_990868.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_990869.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_990874.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_990876.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354
YP_990878.1	identified by match to protein family HMM PF04972
YP_990880.1	identified by match to protein family HMM PF00294
YP_990883.1	Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation
YP_990884.1	identified by match to protein family HMM PF01515; match to protein family HMM PF01575
YP_990885.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167
YP_990887.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_990888.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_990889.1	identified by match to protein family HMM TIGR02230
YP_990891.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_990892.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_990893.1	identified by match to protein family HMM PF00430
YP_990894.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_990897.1	identified by match to protein family HMM PF00107
YP_990902.1	identified by match to protein family HMM PF00015
YP_990904.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_990905.1	identified by match to protein family HMM PF01061
YP_990906.1	identified by match to protein family HMM PF00005; match to protein family HMM PF01061
YP_990909.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_990910.1	identified by match to protein family HMM PF00440
YP_990912.1	identified by match to protein family HMM PF00582
YP_990914.1	identified by match to protein family HMM PF02687
YP_990915.1	identified by match to protein family HMM PF00005
YP_990916.1	identified by match to protein family HMM PF00529
YP_990917.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_990918.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_990919.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_990921.1	identified by match to protein family HMM PF04972
YP_990924.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_990930.1	identified by match to protein family HMM TIGR02822
YP_990931.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_990934.1	identified by match to protein family HMM PF00106; match to protein family HMM TIGR01829
YP_990936.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_990939.1	identified by match to protein family HMM PF01609
YP_990941.1	identified by match to protein family HMM PF00324
YP_990942.1	identified by match to protein family HMM PF00665
YP_990943.1	identified by match to protein family HMM PF01527
YP_990945.1	identified by match to protein family HMM PF02012
YP_990949.1	identified by match to protein family HMM PF00857
YP_990950.1	identified by match to protein family HMM PF01047
YP_990952.1	identified by match to protein family HMM PF07859
YP_990953.1	catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol
YP_990954.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021
YP_990955.1	identified by match to protein family HMM PF00866
YP_990956.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_990957.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990958.1	identified by match to protein family HMM PF01370
YP_990959.1	identified by match to protein family HMM PF00126
YP_990962.1	identified by match to protein family HMM PF00165
YP_990963.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_990965.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_990966.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843
YP_990967.1	identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842
YP_990968.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_990969.1	identified by match to protein family HMM PF02426
YP_990970.1	identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439
YP_990971.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534
YP_990972.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_990973.1	identified by match to protein family HMM PF00165
YP_990974.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_990975.1	identified by match to protein family HMM PF00866
YP_990976.1	identified by match to protein family HMM PF00355
YP_990977.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_990978.1	identified by match to protein family HMM PF01230
YP_990979.1	identified by match to protein family HMM PF00614
YP_990983.1	identified by match to protein family HMM PF04286
YP_990984.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_990986.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_990987.1	identified by match to protein family HMM PF00171
YP_990992.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_990994.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_990995.1	identified by match to protein family HMM PF01584
YP_990996.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719
YP_990997.1	identified by match to protein family HMM PF01584
YP_990998.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518
YP_990999.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_991000.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_991002.1	identified by match to protein family HMM PF00654
YP_991004.1	identified by match to protein family HMM PF02517
YP_991007.1	identified by match to protein family HMM PF05433
YP_991009.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_991010.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_991011.1	identified by match to protein family HMM PF01965
YP_991012.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_991014.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413
YP_991019.1	identified by match to protein family HMM PF02566
YP_991020.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991021.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_991022.1	identified by match to protein family HMM PF01636
YP_991023.1	identified by match to protein family HMM PF00300
YP_991024.1	identified by match to protein family HMM PF00106
YP_991026.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_991027.1	identified by match to protein family HMM PF00107
YP_991029.1	identified by match to protein family HMM PF07690
YP_991030.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_991032.1	identified by match to protein family HMM PF01594
YP_991034.1	identified by match to protein family HMM PF05957
YP_991036.1	identified by match to protein family HMM PF03372
YP_991037.1	identified by match to protein family HMM PF04946
YP_991038.1	identified by match to protein family HMM PF04946
YP_991040.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_991043.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_991044.1	identified by match to protein family HMM PF02915
YP_991048.1	identified by match to protein family HMM PF01050; match to protein family HMM PF07883
YP_991049.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479
YP_991051.1	identified by match to protein family HMM TIGR03025
YP_991052.1	identified by match to protein family HMM PF01527
YP_991053.1	identified by match to protein family HMM PF00665
YP_991056.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_991059.1	identified by match to protein family HMM PF01070
YP_991060.1	identified by match to protein family HMM PF04073
YP_991063.1	identified by match to protein family HMM PF02581
YP_991064.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_991065.1	identified by match to protein family HMM PF00512
YP_991066.1	identified by match to protein family HMM PF00892
YP_991067.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991068.1	identified by match to protein family HMM PF01361
YP_991069.1	identified by match to protein family HMM PF05235
YP_991070.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638
YP_991072.1	identified by match to protein family HMM PF00005
YP_991073.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_991074.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_991075.1	identified by match to protein family HMM PF01569
YP_991076.1	identified by match to protein family HMM TIGR01840
YP_991078.1	identified by match to protein family HMM PF02566
YP_991079.1	identified by match to protein family HMM PF01047
YP_991082.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_991085.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_991086.1	identified by match to protein family HMM PF00589
YP_991092.1	identified by match to protein family HMM PF04463
YP_991094.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_991095.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_991096.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_991101.1	identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409
YP_991102.1	identified by match to protein family HMM PF00581
YP_991103.1	identified by match to protein family HMM PF01609
YP_991104.1	identified by match to protein family HMM PF00355
YP_991105.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_991106.1	identified by match to protein family HMM PF00348
YP_991107.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_991108.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_991110.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_991111.1	identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_991112.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_991113.1	identified by match to protein family HMM PF02637
YP_991114.1	synthesizes RNA primers at the replication forks
YP_991115.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_991116.1	identified by match to protein family HMM PF01609
YP_991118.1	identified by match to protein family HMM PF00665
YP_991119.1	identified by match to protein family HMM PF01527
YP_991121.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991123.1	identified by match to protein family HMM PF05036
YP_991125.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_991127.1	identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883
YP_991128.1	identified by match to protein family HMM PF00496
YP_991129.1	identified by match to protein family HMM PF00528
YP_991130.1	identified by match to protein family HMM PF00528
YP_991131.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_991132.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_991133.1	identified by match to protein family HMM PF03573
YP_991139.1	identified by match to protein family HMM PF03600
YP_991141.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_991145.1	identified by match to protein family HMM PF00816
YP_991148.1	identified by match to protein family HMM PF00583; match to protein family HMM PF02629
YP_991153.2	catalyzes the formation of indole-3-acetic acid from indole-3-acetamide
YP_991154.1	identified by match to protein family HMM PF01614
YP_991156.1	identified by match to protein family HMM PF01557
YP_991157.1	identified by match to protein family HMM PF01070
YP_991158.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991160.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_991162.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212
YP_991163.1	identified by match to protein family HMM PF07690
YP_991164.1	identified by match to protein family HMM PF00753
YP_991165.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01022
YP_991169.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991171.1	catalyzes the formation of pyruvate from serine
YP_991172.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991174.1	identified by match to protein family HMM PF00106
YP_991179.1	identified by match to protein family HMM PF01494
YP_991182.1	identified by match to protein family HMM PF00498
YP_991185.1	identified by match to protein family HMM PF05936
YP_991186.1	identified by match to protein family HMM PF00691
YP_991187.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_991192.1	identified by match to protein family HMM PF00069
YP_991193.1	identified by match to protein family HMM PF06812
YP_991194.1	identified by match to protein family HMM PF05591
YP_991195.1	identified by match to protein family HMM PF05943
YP_991196.1	identified by match to protein family HMM PF05638
YP_991197.1	identified by match to protein family HMM PF07025
YP_991198.1	identified by match to protein family HMM PF05947
YP_991199.1	identified by match to protein family HMM PF06996
YP_991200.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_991201.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_991203.1	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_991204.1	identified by match to protein family HMM PF00665
YP_991205.1	identified by match to protein family HMM PF01527
YP_991207.1	identified by match to protein family HMM PF03865
YP_991208.1	identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901
YP_991209.1	catalyzes the conversion of citrate to isocitrate
YP_991210.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_991212.1	identified by match to protein family HMM PF03328
YP_991213.1	catalyzes the oxidation of malate to oxaloacetate
YP_991214.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_991215.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_991216.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968
YP_991217.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_991218.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_991219.1	identified by match to protein family HMM PF03937
YP_991220.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_991221.1	identified by match to protein family HMM PF00165
YP_991223.1	identified by match to protein family HMM PF00665
YP_991224.1	identified by match to protein family HMM PF01527
YP_991227.1	identified by match to protein family HMM PF07350
YP_991228.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_991229.1	identified by match to protein family HMM PF01037
YP_991235.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_991236.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_991237.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_991239.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_991241.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_991242.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_991243.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_991244.1	identified by match to protein family HMM PF01555
YP_991245.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_991246.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_991247.1	identified by match to protein family HMM PF02875; match to protein family HMM TIGR01499
YP_991248.1	identified by match to protein family HMM PF05036
YP_991249.1	identified by match to protein family HMM PF02674
YP_991250.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_991251.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_991253.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_991254.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472
YP_991255.1	identified by match to protein family HMM PF01757
YP_991259.1	identified by match to protein family HMM PF01943
YP_991260.1	identified by match to protein family HMM PF00534
YP_991263.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_991264.1	identified by match to protein family HMM PF01757
YP_991265.1	identified by match to protein family HMM PF00216
YP_991268.1	identified by match to protein family HMM PF00267
YP_991269.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_991271.1	identified by match to protein family HMM PF04952
YP_991273.1	identified by match to protein family HMM PF00583
YP_991274.1	identified by match to protein family HMM PF00497
YP_991276.1	identified by match to protein family HMM PF00296
YP_991279.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_991281.1	identified by match to protein family HMM TIGR01409
YP_991282.1	identified by match to protein family HMM PF02698
YP_991284.1	identified by match to protein family HMM PF04879; match to protein family HMM TIGR01409
YP_991286.1	identified by match to protein family HMM PF01568
YP_991287.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01582
YP_991288.1	identified by match to protein family HMM TIGR01583
YP_991289.1	identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562
YP_991290.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_991291.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00475
YP_991297.1	identified by match to protein family HMM PF01915
YP_991298.1	identified by match to protein family HMM PF00933
YP_991299.1	identified by match to protein family HMM PF07690
YP_991301.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_991304.1	identified by match to protein family HMM PF01734
YP_991307.1	identified by match to protein family HMM PF00652
YP_991310.1	identified by match to protein family HMM PF00072
YP_991312.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_991314.1	identified by match to protein family HMM PF07690
YP_991315.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991318.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991319.1	identified by match to protein family HMM PF03328
YP_991320.1	identified by match to protein family HMM PF01575
YP_991321.1	identified by match to protein family HMM PF02550
YP_991322.1	catalyzes the formation of acetate from pyruvate
YP_991326.1	identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709
YP_991327.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_991328.1	identified by match to protein family HMM PF00665
YP_991329.1	identified by match to protein family HMM PF01527
YP_991331.1	identified by match to protein family HMM PF01609
YP_991332.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_991333.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_991336.1	identified by match to protein family HMM PF03239
YP_991338.1	identified by match to protein family HMM PF03928
YP_991339.1	identified by match to protein family HMM PF01527
YP_991340.1	identified by match to protein family HMM PF00665
YP_991342.1	identified by match to protein family HMM PF00665
YP_991343.1	identified by match to protein family HMM PF01527
YP_991344.1	identified by match to protein family HMM PF00903; match to protein family HMM PF01261
YP_991345.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_991346.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_991347.1	identified by match to protein family HMM PF07690
YP_991348.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_991350.1	identified by match to protein family HMM PF01547
YP_991351.1	identified by match to protein family HMM PF00005
YP_991352.1	identified by match to protein family HMM PF00528
YP_991353.1	identified by match to protein family HMM PF00528
YP_991354.1	identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335
YP_991355.1	identified by match to protein family HMM PF00171
YP_991357.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_991359.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_991360.1	identified by match to protein family HMM PF01037
YP_991361.1	identified by match to protein family HMM PF00583
YP_991362.1	identified by match to protein family HMM PF00440
YP_991364.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160
YP_991365.1	identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159
YP_991366.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_991367.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_991368.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_991369.1	identified by match to protein family HMM PF00657
YP_991370.1	identified by match to protein family HMM PF01527
YP_991371.1	identified by match to protein family HMM PF00665
YP_991372.1	identified by match to protein family HMM PF00324
YP_991373.1	identified by match to protein family HMM PF00034
YP_991374.1	identified by match to protein family HMM PF04972
YP_991375.1	identified by match to protein family HMM TIGR00441
YP_991376.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_991377.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_991378.1	identified by match to protein family HMM PF01609
YP_991380.1	identified by match to protein family HMM PF00881
YP_991382.1	identified by match to protein family HMM PF07690
YP_991383.1	identified by match to protein family HMM PF00440
YP_991384.1	identified by match to protein family HMM PF07209
YP_991386.1	identified by match to protein family HMM PF05175
YP_991388.1	identified by match to protein family HMM PF01757
YP_991391.1	identified by match to protein family HMM PF01433
YP_991396.1	identified by match to protein family HMM PF00529
YP_991397.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_991398.1	identified by match to protein family HMM PF02321
YP_991400.1	identified by match to protein family HMM PF02557
YP_991402.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_991404.1	identified by match to protein family HMM PF00691
YP_991405.1	identified by match to protein family HMM PF06812
YP_991406.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_991407.1	identified by match to protein family HMM PF06996
YP_991408.1	identified by match to protein family HMM PF05947
YP_991409.1	identified by match to protein family HMM PF07025
YP_991410.1	identified by match to protein family HMM PF00665
YP_991411.1	identified by match to protein family HMM PF01527
YP_991413.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_991414.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_991415.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_991418.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_991419.1	identified by match to protein family HMM PF00293
YP_991420.1	identified by match to protein family HMM PF01810
YP_991421.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_991422.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254
YP_991423.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393
YP_991424.1	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670
YP_991425.1	identified by match to protein family HMM PF06835
YP_991426.1	identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002
YP_991427.1	identified by match to protein family HMM PF00005
YP_991428.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_991429.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_991430.1	identified by match to protein family HMM PF00359
YP_991431.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_991432.1	identified by match to protein family HMM PF03668
YP_991433.1	identified by match to protein family HMM PF02190
YP_991434.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_991435.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_991436.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07721
YP_991437.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_991438.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_991439.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_991440.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_991441.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_991442.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_991443.1	identified by match to protein family HMM PF00037
YP_991444.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_991445.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_991446.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_991448.1	identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262
YP_991450.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_991451.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_991452.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879
YP_991453.1	identified by match to protein family HMM PF02885
YP_991454.1	identified by match to protein family HMM PF00583
YP_991455.1	identified by match to protein family HMM PF00682; match to protein family HMM TIGR00970
YP_991456.1	identified by match to protein family HMM TIGR02246
YP_991458.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_991459.1	identified by match to protein family HMM PF01609
YP_991460.1	identified by match to protein family HMM PF04392
YP_991461.1	identified by match to protein family HMM PF02653
YP_991462.1	identified by match to protein family HMM PF00005
YP_991465.1	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_991467.1	identified by match to protein family HMM PF07690
YP_991469.1	identified by match to protein family HMM PF00487
YP_991470.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709
YP_991472.1	identified by match to protein family HMM PF01061
YP_991473.1	identified by match to protein family HMM PF00005
YP_991474.1	identified by match to protein family HMM PF02668
YP_991475.1	identified by match to protein family HMM PF01209
YP_991477.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_991479.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098
YP_991480.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_991487.1	identified by match to protein family HMM PF00501
YP_991488.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991489.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_991490.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_991491.1	identified by match to protein family HMM PF01380
YP_991492.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417
YP_991493.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_991494.1	identified by match to protein family HMM PF00728; match to protein family HMM PF03173
YP_991497.1	identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106
YP_991498.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_991499.1	identified by match to protein family HMM PF01654
YP_991501.1	identified by match to protein family HMM PF01610
YP_991503.1	identified by match to protein family HMM PF00665
YP_991504.1	identified by match to protein family HMM PF01527
YP_991506.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_991508.1	identified by match to protein family HMM PF00015
YP_991509.1	identified by match to protein family HMM PF03795
YP_991510.1	identified by match to protein family HMM PF02630
YP_991511.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_991512.1	identified by match to protein family HMM PF02628
YP_991516.1	identified by match to protein family HMM PF00510
YP_991518.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_991520.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_991521.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_991525.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_991527.1	identified by match to protein family HMM PF01661
YP_991528.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_991529.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_991530.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181
YP_991531.1	identified by match to protein family HMM PF00581
YP_991532.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_991533.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_991534.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_991536.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_991537.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_991538.1	identified by match to protein family HMM PF03610
YP_991539.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_991540.1	identified by match to protein family HMM TIGR02049
YP_991542.1	identified by match to protein family HMM PF01609
YP_991543.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_991544.1	identified by match to protein family HMM PF00543
YP_991545.1	identified by match to protein family HMM PF04380
YP_991546.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368
YP_991547.1	identified by match to protein family HMM PF00583
YP_991549.1	identified by match to protein family HMM PF00975
YP_991552.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_991553.1	identified by match to protein family HMM PF02518
YP_991555.1	involved in the transport of C4-dicarboxylates across the membrane
YP_991556.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_991557.1	identified by match to protein family HMM PF04341
YP_991558.1	identified by match to protein family HMM PF02515
YP_991559.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_991560.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_991561.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_991562.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991565.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_991568.1	identified by match to protein family HMM PF01609
YP_991569.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_991570.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_991572.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_991573.1	identified by match to protein family HMM PF04359
YP_991574.1	identified by match to protein family HMM PF01063
YP_991575.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_991579.1	identified by match to protein family HMM PF04892
YP_991581.1	identified by match to protein family HMM PF02470
YP_991582.1	identified by match to protein family HMM PF00005
YP_991583.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_991584.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_991586.2	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_991587.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_991589.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_991593.1	identified by match to protein family HMM PF01734
YP_991595.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_991596.1	identified by match to protein family HMM PF01557
YP_991597.1	identified by match to protein family HMM PF01614
YP_991600.1	identified by match to protein family HMM PF02574
YP_991601.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_991602.1	identified by match to protein family HMM PF01609
YP_991604.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_991605.1	forms a direct contact with the tRNA during translation
YP_991606.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_991607.1	identified by match to protein family HMM PF00165
YP_991608.1	identified by match to protein family HMM PF02798
YP_991609.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_991610.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_991612.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_991613.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_991614.1	identified by match to protein family HMM PF00300
YP_991617.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_991618.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_991619.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_991621.1	involved in de novo purine biosynthesis
YP_991622.1	identified by match to protein family HMM PF02954
YP_991623.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_991624.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_991625.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_991628.1	identified by match to protein family HMM PF01645
YP_991629.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_991630.1	identified by match to protein family HMM PF00293
YP_991631.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222
YP_991633.1	identified by match to protein family HMM PF02233
YP_991639.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_991642.1	identified by match to protein family HMM PF03886
YP_991643.1	identified by match to protein family HMM PF02470
YP_991644.1	identified by match to protein family HMM PF04403
YP_991645.1	identified by match to protein family HMM PF04403
YP_991646.1	identified by match to protein family HMM PF01292
YP_991647.1	identified by match to protein family HMM PF04264
YP_991648.1	identified by match to protein family HMM PF04264
YP_991651.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_991652.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_991653.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_991654.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_991656.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_991657.1	catalyzes branch migration in Holliday junction intermediates
YP_991658.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991659.1	identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198
YP_991661.1	identified by match to protein family HMM PF00210
YP_991662.1	identified by match to protein family HMM PF01638
YP_991663.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_991664.1	identified by match to protein family HMM TIGR02322
YP_991666.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325
YP_991667.1	identified by match to protein family HMM PF06754
YP_991668.1	identified by match to protein family HMM PF05845
YP_991669.1	identified by match to protein family HMM PF05861
YP_991670.1	identified by match to protein family HMM PF06007
YP_991671.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323
YP_991672.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324
YP_991673.1	identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318
YP_991674.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_991675.1	identified by match to protein family HMM TIGR01098
YP_991677.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_991678.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_991679.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_991680.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_991681.1	identified by match to protein family HMM PF01565
YP_991682.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_991683.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_991684.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_991685.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_991686.1	identified by match to protein family HMM PF01609
YP_991687.1	identified by match to protein family HMM PF02566
YP_991689.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_991691.1	identified by match to protein family HMM PF00310
YP_991693.1	identified by match to protein family HMM PF00011
YP_991694.1	identified by match to protein family HMM PF00011
YP_991695.1	identified by match to protein family HMM PF00166
YP_991698.1	identified by match to protein family HMM PF00005
YP_991699.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_991700.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_991701.1	identified by match to protein family HMM PF01610
YP_991703.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_991705.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991707.1	identified by match to protein family HMM PF07690
YP_991708.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_991709.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_991710.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_991712.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_991713.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_991715.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_991716.1	identified by match to protein family HMM PF03653
YP_991717.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_991718.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_991720.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_991721.1	identified by match to protein family HMM PF02472
YP_991722.1	identified by match to protein family HMM PF01618
YP_991723.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_991724.1	identified by match to protein family HMM PF04355
YP_991725.1	identified by match to protein family HMM PF01475
YP_991726.1	identified by match to protein family HMM PF04115
YP_991728.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_991729.1	involved in the transport of C4-dicarboxylates across the membrane
YP_991731.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_991733.1	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_991734.1	identified by match to protein family HMM PF00484
YP_991735.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_991736.1	identified by match to protein family HMM PF07690
YP_991738.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_991739.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_991740.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_991741.1	identified by match to protein family HMM PF00903
YP_991742.2	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_991745.1	identified by match to protein family HMM PF00545
YP_991746.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_991747.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_991748.1	identified by match to protein family HMM PF04608
YP_991749.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_991751.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_991752.1	identified by match to protein family HMM PF01263
YP_991753.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_991754.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_991755.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_991756.1	identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409
YP_991757.1	identified by match to protein family HMM PF00106
YP_991758.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_991759.1	identified by match to protein family HMM PF05035
YP_991760.1	identified by match to protein family HMM PF01614
YP_991762.1	identified by match to protein family HMM PF00450
YP_991763.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_991764.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_991765.1	identified by match to protein family HMM PF00773
YP_991766.1	identified by match to protein family HMM PF05728
YP_991767.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01081
YP_991771.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_991772.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_991773.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_991774.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_991775.1	identified by match to protein family HMM TIGR02098
YP_991777.1	identified by match to protein family HMM PF00294
YP_991778.1	identified by match to protein family HMM PF05433
YP_991780.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_991781.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_991783.1	identified by match to protein family HMM PF01510
YP_991785.1	identified by match to protein family HMM PF01578
YP_991786.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_991787.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_991788.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_991789.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_991790.1	hydrolyzes diadenosine polyphosphate
YP_991793.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_991794.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_991795.1	involved in the peptidyltransferase reaction during translation
YP_991796.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_991797.1	identified by match to protein family HMM PF00348
YP_991799.1	identified by match to protein family HMM PF00665
YP_991800.1	identified by match to protein family HMM PF01527
YP_991801.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_991802.1	identified by match to protein family HMM PF00437
YP_991803.1	identified by match to protein family HMM PF00482
YP_991804.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_991805.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_991806.1	identified by match to protein family HMM PF07072
YP_991807.1	identified by match to protein family HMM PF03884
YP_991808.1	identified by match to protein family HMM PF00293
YP_991809.1	identified by match to protein family HMM PF05673
YP_991810.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_991811.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_991813.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_991815.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_991817.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_991818.1	identified by match to protein family HMM PF03799
YP_991819.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_991820.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_991821.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_991822.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_991823.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_991824.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_991825.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143
YP_991826.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_991827.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_991828.1	identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209
YP_991829.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_991830.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_991832.1	identified by match to protein family HMM PF00267
YP_991833.1	identified by match to protein family HMM PF01609
YP_991835.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_991837.1	identified by match to protein family HMM PF01523
YP_991838.1	identified by match to protein family HMM PF00795
YP_991839.1	identified by match to protein family HMM TIGR02099
YP_991840.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_991841.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_991842.1	catalyzes the phosphorylation of NAD to NADP
YP_991843.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_991844.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_991845.1	identified by match to protein family HMM PF01479
YP_991847.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_991849.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_991851.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_991852.1	identified by match to protein family HMM PF00425
YP_991853.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_991854.1	identified by match to protein family HMM PF01712
YP_991855.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_991856.1	identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942
YP_991857.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_991858.1	identified by match to protein family HMM PF00308
YP_991860.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_991861.1	identified by match to protein family HMM TIGR02246
YP_991862.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_991863.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_991865.1	identified by match to protein family HMM PF00924
YP_991866.1	identified by match to protein family HMM PF00310
YP_991867.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_991868.1	identified by match to protein family HMM PF05159
YP_991869.1	identified by match to protein family HMM PF00534
YP_991870.1	identified by match to protein family HMM PF02563
YP_991874.1	identified by match to protein family HMM PF00534
YP_991877.1	identified by match to protein family HMM PF00534
YP_991880.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_991881.1	identified by match to protein family HMM PF00288
YP_991882.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_991883.1	identified by match to protein family HMM PF00483
YP_991884.1	identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_991885.1	identified by match to protein family HMM PF05159
YP_991886.1	identified by match to protein family HMM PF00106
YP_991887.1	identified by match to protein family HMM PF00884
YP_991888.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801
YP_991889.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_991890.1	identified by match to protein family HMM PF00155; match to protein family HMM PF01212
YP_991893.1	identified by match to protein family HMM PF01527
YP_991894.1	identified by match to protein family HMM PF00665
YP_991895.1	identified by match to protein family HMM PF02643
YP_991896.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_991900.1	identified by match to protein family HMM PF00248
YP_991901.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_991904.1	identified by match to protein family HMM PF00285; match to protein family HMM PF00376
YP_991905.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_991907.1	identified by match to protein family HMM PF00563
YP_991910.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_991911.1	identified by match to protein family HMM PF06127
YP_991912.1	identified by match to protein family HMM PF00665
YP_991913.1	identified by match to protein family HMM PF01527
YP_991914.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_991915.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_991917.1	Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_991918.1	identified by match to protein family HMM PF03966
YP_991919.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_991920.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_991921.1	identified by match to protein family HMM PF01609
YP_991922.1	identified by match to protein family HMM PF00313
YP_991923.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_991924.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639
YP_991926.1	identified by match to protein family HMM PF00665
YP_991927.1	identified by match to protein family HMM PF01527
YP_991929.1	identified by match to protein family HMM PF01435
YP_991931.1	identified by match to protein family HMM PF00561
YP_991933.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195
YP_991935.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_991936.1	identified by match to protein family HMM PF03591
YP_991937.1	identified by match to protein family HMM PF05437
YP_991938.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_991940.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_991941.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_991942.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_991943.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_991944.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_991945.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_991949.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_991950.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_991951.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_991952.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_991954.1	identified by match to protein family HMM PF04248
YP_991955.1	identified by match to protein family HMM PF06240
YP_991956.1	identified by match to protein family HMM PF00440
YP_991957.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_991958.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_991959.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_991960.1	identified by match to protein family HMM PF01610
YP_991963.1	identified by match to protein family HMM PF00665
YP_991964.1	identified by match to protein family HMM PF01527
YP_991965.1	identified by match to protein family HMM PF00860
YP_991966.1	identified by match to protein family HMM PF00370
YP_991967.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_991968.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02818
YP_991969.1	identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821
YP_991970.1	identified by match to protein family HMM PF00950
YP_991971.1	identified by match to protein family HMM PF00005
YP_991972.1	identified by match to protein family HMM PF01297
YP_991973.1	identified by match to protein family HMM PF01475
YP_991974.1	Converts D-sorbitol to L-sorbose
YP_991975.1	identified by match to protein family HMM PF00294
YP_991976.1	identified by match to protein family HMM PF08013
YP_991977.1	identified by match to protein family HMM PF01547
YP_991978.1	identified by match to protein family HMM PF00528
YP_991979.1	identified by match to protein family HMM PF00528
YP_991980.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_991981.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459
YP_991983.1	identified by match to protein family HMM TIGR01409
YP_991984.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991985.1	identified by match to protein family HMM PF00144
YP_991986.1	identified by match to protein family HMM PF07690
YP_991987.1	identified by match to protein family HMM PF04198
YP_991988.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_991989.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_991990.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_991991.1	catalyzes the formation of benzaldehyde from benzoylformate
YP_991992.1	identified by match to protein family HMM PF00171
YP_991993.1	identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM TIGR00745
YP_991995.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_991996.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_991997.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814
YP_991998.1	identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035
YP_991999.1	identified by match to protein family HMM PF01037
YP_992000.1	identified by match to protein family HMM PF01613
YP_992001.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_992003.1	identified by match to protein family HMM PF01904
YP_992004.1	identified by match to protein family HMM PF02353
YP_992005.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_992006.1	identified by match to protein family HMM PF00899
YP_992007.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_992008.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_992009.1	identified by match to protein family HMM PF00892
YP_992011.1	identified by match to protein family HMM PF01520
YP_992012.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_992013.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR00276
YP_992014.1	identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_992015.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_992016.1	identified by match to protein family HMM PF00501
YP_992017.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_992018.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_992019.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_992020.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_992021.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_992023.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_992024.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_992026.1	identified by match to protein family HMM PF00106
YP_992027.1	identified by match to protein family HMM PF01609
YP_992028.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_992030.1	Converts isocitrate to alpha ketoglutarate
YP_992031.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093
YP_992032.1	identified by match to protein family HMM PF01527
YP_992033.1	identified by match to protein family HMM PF00665
YP_992035.1	identified by match to protein family HMM PF00561
YP_992037.1	identified by match to protein family HMM PF00301
YP_992039.1	identified by match to protein family HMM PF00005
YP_992040.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_992041.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_992043.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992044.1	identified by match to protein family HMM PF05232
YP_992045.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992047.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992048.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_992049.1	identified by match to protein family HMM PF00850
YP_992051.1	identified by match to protein family HMM PF02417
YP_992052.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_992053.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_992054.1	identified by match to protein family HMM PF01042
YP_992055.1	identified by match to protein family HMM PF00665
YP_992056.1	identified by match to protein family HMM PF01527
YP_992057.1	identified by match to protein family HMM PF00953
YP_992058.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_992059.1	identified by match to protein family HMM PF00534
YP_992060.1	identified by match to protein family HMM PF00535
YP_992062.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_992063.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_992065.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_992066.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_992067.1	identified by match to protein family HMM PF01730
YP_992068.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_992069.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_992070.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_992071.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_992073.1	identified by match to protein family HMM PF01774
YP_992074.1	identified by match to protein family HMM PF00005
YP_992075.1	identified by match to protein family HMM PF00005
YP_992076.1	identified by match to protein family HMM PF02653
YP_992077.1	identified by match to protein family HMM PF02653
YP_992080.1	catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor
YP_992081.1	identified by match to protein family HMM PF00581
YP_992082.1	identified by match to protein family HMM PF01135; match to protein family HMM PF05175
YP_992084.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_992086.1	identified by match to protein family HMM PF03692
YP_992088.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_992089.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_992090.1	identified by match to protein family HMM PF02146
YP_992094.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_992096.1	identified by match to protein family HMM PF02325
YP_992097.1	identified by match to protein family HMM PF03807
YP_992100.1	catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine
YP_992102.1	identified by match to protein family HMM PF01810
YP_992103.1	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148
YP_992104.1	identified by match to protein family HMM PF01464
YP_992106.1	identified by match to protein family HMM PF00155
YP_992107.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_992108.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_992109.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis
YP_992111.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_992112.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_992113.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_992117.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_992119.1	catalyzes the formation of pyruvate from D-cysteine
YP_992120.1	identified by match to protein family HMM PF00005
YP_992121.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_992122.1	identified by match to protein family HMM PF00497
YP_992123.1	glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_992124.1	identified by match to protein family HMM TIGR01198
YP_992125.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_992127.1	identified by match to protein family HMM PF01547
YP_992129.1	identified by match to protein family HMM PF00528
YP_992130.1	identified by match to protein family HMM PF00528
YP_992131.1	identified by match to protein family HMM PF00005
YP_992132.1	identified by match to protein family HMM PF03458
YP_992133.1	identified by match to protein family HMM PF01713
YP_992134.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_992135.1	identified by match to protein family HMM PF01580
YP_992136.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_992137.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_992139.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_992142.1	identified by match to protein family HMM PF00583
YP_992143.1	blocks the formation of polar Z-ring septums
YP_992144.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_992145.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_992147.1	identified by match to protein family HMM PF00654
YP_992148.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_992150.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992151.1	identified by match to protein family HMM TIGR01352
YP_992154.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_992155.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_992156.2	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_992157.1	identified by match to protein family HMM PF03755; match to protein family HMM TIGR00255
YP_992158.1	Essential for recycling GMP and indirectly, cGMP
YP_992159.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_992160.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_992161.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_992163.1	identified by match to protein family HMM PF01527
YP_992164.1	identified by match to protein family HMM PF00665
YP_992165.1	identified by match to protein family HMM TIGR02795
YP_992166.1	identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802
YP_992167.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_992168.1	identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794
YP_992169.1	identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801
YP_992170.1	identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796
YP_992171.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799
YP_992172.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_992174.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_992175.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_992176.1	identified by match to protein family HMM TIGR02532
YP_992178.1	identified by match to protein family HMM TIGR02532
YP_992183.1	identified by match to protein family HMM PF05957
YP_992184.1	identified by match to protein family HMM PF00578
YP_992186.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_992187.1	identified by match to protein family HMM PF01614
YP_992189.1	identified by match to protein family HMM PF04828
YP_992190.1	identified by match to protein family HMM PF00563
YP_992192.1	identified by match to protein family HMM PF00753
YP_992193.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_992195.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992196.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_992197.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR01266
YP_992199.1	identified by match to protein family HMM PF07690
YP_992201.1	identified by match to protein family HMM PF07690
YP_992202.1	identified by match to protein family HMM PF00881; match to protein family HMM TIGR02476
YP_992203.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_992204.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992206.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_992207.1	identified by match to protein family HMM PF00165
YP_992208.1	identified by match to protein family HMM PF00892
YP_992209.1	identified by match to protein family HMM PF07690
YP_992211.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963
YP_992212.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965
YP_992214.1	identified by match to protein family HMM PF01547
YP_992217.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_992218.1	identified by match to protein family HMM PF00005
YP_992221.1	identified by match to protein family HMM PF01032
YP_992222.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992223.1	identified by match to protein family HMM PF01323
YP_992225.1	identified by match to protein family HMM PF04972
YP_992228.1	identified by match to protein family HMM PF00450
YP_992229.1	identified by match to protein family HMM PF01925
YP_992231.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_992232.1	identified by match to protein family HMM PF03009
YP_992233.1	identified by match to protein family HMM PF01810
YP_992234.1	identified by match to protein family HMM PF00583
YP_992235.1	identified by match to protein family HMM PF01381
YP_992236.1	identified by match to protein family HMM PF00753
YP_992237.1	identified by match to protein family HMM PF01638; match to protein family HMM PF03551
YP_992241.1	identified by match to protein family HMM PF03922
YP_992244.1	identified by match to protein family HMM PF00107
YP_992245.1	identified by match to protein family HMM PF01638
YP_992251.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_992252.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_992254.1	identified by match to protein family HMM PF00301
YP_992256.1	identified by match to protein family HMM PF02622
YP_992257.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_992258.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_992259.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_992260.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_992261.1	identified by match to protein family HMM PF01553
YP_992262.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_992263.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_992264.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_992266.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01214
YP_992267.1	identified by match to protein family HMM PF01061
YP_992268.1	identified by match to protein family HMM PF00005
YP_992269.1	identified by match to protein family HMM PF01757
YP_992270.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_992272.1	identified by match to protein family HMM PF00535
YP_992273.1	identified by match to protein family HMM PF00535
YP_992275.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_992276.1	identified by match to protein family HMM PF00953
YP_992277.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_992278.1	identified by match to protein family HMM PF00665
YP_992279.1	identified by match to protein family HMM PF01527
YP_992280.1	identified by match to protein family HMM PF02653
YP_992281.1	identified by match to protein family HMM PF02653
YP_992282.1	identified by match to protein family HMM PF00005
YP_992283.1	identified by match to protein family HMM PF00005
YP_992285.1	identified by match to protein family HMM PF00583
YP_992286.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_992287.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_992288.1	identified by match to protein family HMM PF01370
YP_992290.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_992291.1	identified by match to protein family HMM PF04234
YP_992292.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992293.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992294.1	identified by match to protein family HMM PF00561
YP_992295.1	identified by match to protein family HMM PF03473
YP_992296.1	identified by match to protein family HMM PF00701
YP_992297.1	identified by match to protein family HMM PF00596
YP_992298.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_992300.1	identified by match to protein family HMM PF00665
YP_992301.1	identified by match to protein family HMM PF01527
YP_992304.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_992308.1	identified by match to protein family HMM PF07690
YP_992309.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_992317.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_992318.1	identified by match to protein family HMM PF00768
YP_992323.1	identified by match to protein family HMM PF01527
YP_992324.1	identified by match to protein family HMM PF00665
YP_992325.1	identified by match to protein family HMM PF00005
YP_992326.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_992327.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_992328.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_992330.1	identified by match to protein family HMM PF02678
YP_992333.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_992334.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_992337.1	identified by match to protein family HMM PF00528
YP_992338.1	identified by match to protein family HMM PF00005
YP_992339.1	identified by match to protein family HMM PF00665
YP_992340.1	identified by match to protein family HMM PF01527
YP_992341.1	identified by match to protein family HMM PF00155
YP_992342.1	identified by match to protein family HMM PF00892
YP_992344.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_992345.1	molecular chaperone
YP_992346.1	identified by match to protein family HMM PF04345
YP_992351.1	identified by match to protein family HMM PF00474
YP_992352.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_992353.1	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874
YP_992354.1	identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_992356.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_992357.1	identified by match to protein family HMM PF00034
YP_992358.1	identified by match to protein family HMM PF00034
YP_992359.1	identified by match to protein family HMM PF01610
YP_992361.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_992362.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_992363.1	Involved in the electron transport chain
YP_992365.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_992368.1	identified by match to protein family HMM PF00723
YP_992372.1	identified by match to protein family HMM PF01580
YP_992373.1	identified by match to protein family HMM PF03724
YP_992375.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_992380.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_992381.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_992382.1	identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594
YP_992383.1	identified by match to protein family HMM PF00581
YP_992385.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203
YP_992386.1	identified by match to protein family HMM PF00534
YP_992387.1	identified by match to protein family HMM PF01075
YP_992389.1	identified by match to protein family HMM PF00534
YP_992390.1	identified by match to protein family HMM PF01075
YP_992391.1	identified by match to protein family HMM PF00535
YP_992394.1	identified by match to protein family HMM PF07690
YP_992397.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_992398.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957
YP_992406.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_992408.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_992409.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_992410.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_992411.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_992412.1	catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP
YP_992413.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_992414.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_992415.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_992417.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_992418.1	identified by match to protein family HMM PF00106
YP_992419.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_992420.1	identified by match to protein family HMM PF00107
YP_992423.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_992424.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_992425.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_992427.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702
YP_992428.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_992429.1	identified by match to protein family HMM PF03891
YP_992430.1	identified by match to protein family HMM PF00893
YP_992433.1	identified by match to protein family HMM PF02687
YP_992435.1	identified by match to protein family HMM PF01152
YP_992436.1	identified by match to protein family HMM PF07973
YP_992437.1	identified by match to protein family HMM PF06041
YP_992438.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_992439.1	identified by match to protein family HMM PF01610
YP_992440.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992443.1	Converts glucose to D-glucono-1,5 lactone
YP_992444.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_992445.1	identified by match to protein family HMM PF00440
YP_992446.1	identified by match to protein family HMM PF01219
YP_992447.1	identified by match to protein family HMM PF00534
YP_992448.1	identified by match to protein family HMM PF00149
YP_992449.1	identified by match to protein family HMM PF06271
YP_992452.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_992453.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_992454.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_992455.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_992456.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_992457.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_992458.1	identified by match to protein family HMM PF00682
YP_992459.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_992460.1	identified by match to protein family HMM PF00484
YP_992464.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_992465.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_992466.1	identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824
YP_992467.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_992468.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_992469.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992470.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_992471.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992472.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992473.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992474.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_992475.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_992476.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992477.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992478.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992479.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992480.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_992481.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992482.1	Catalyzes the transfer of electrons from NADH to quinone
YP_992484.1	identified by match to protein family HMM PF00293
YP_992485.1	identified by match to protein family HMM PF06676
YP_992486.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_992487.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_992488.1	identified by match to protein family HMM PF01575
YP_992489.1	identified by match to protein family HMM PF01575
YP_992492.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_992493.1	identified by match to protein family HMM PF01636
YP_992494.1	identified by match to protein family HMM PF00300
YP_992495.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_992497.1	identified by match to protein family HMM PF02798
YP_992498.1	catalyzes the transfer of an amino moiety
YP_992500.1	identified by match to protein family HMM PF03883
YP_992501.1	identified by match to protein family HMM PF00246
YP_992504.1	identified by match to protein family HMM PF00196
YP_992509.1	identified by match to protein family HMM PF02082
YP_992511.1	identified by match to protein family HMM PF01370; match to protein family HMM PF05368
YP_992514.1	identified by match to protein family HMM PF01037
YP_992515.1	identified by match to protein family HMM PF00005
YP_992516.1	identified by match to protein family HMM PF00528
YP_992517.1	identified by match to protein family HMM PF01547
YP_992520.1	identified by match to protein family HMM PF00324
YP_992522.1	identified by match to protein family HMM PF05976
YP_992523.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_992524.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_992526.1	identified by match to protein family HMM PF00472
YP_992527.1	identified by match to protein family HMM PF00563
YP_992529.1	identified by match to protein family HMM PF00892
YP_992530.1	identified by match to protein family HMM PF01527
YP_992531.1	identified by match to protein family HMM PF00665
YP_992532.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_992533.1	identified by match to protein family HMM TIGR02953
YP_992534.1	identified by match to protein family HMM PF06764
YP_992536.1	identified by match to protein family HMM PF00174
YP_992538.1	identified by match to protein family HMM PF00892
YP_992539.1	identified by match to protein family HMM PF07690
YP_992541.1	identified by match to protein family HMM PF03988
YP_992543.1	identified by match to protein family HMM PF00149
YP_992545.1	identified by match to protein family HMM PF00005
YP_992546.1	identified by match to protein family HMM PF00528
YP_992549.1	identified by match to protein family HMM PF00528
YP_992550.1	identified by match to protein family HMM PF01547
YP_992551.1	identified by match to protein family HMM PF00532
YP_992557.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_992560.1	identified by match to protein family HMM PF07040
YP_992563.1	identified by match to protein family HMM PF04299
YP_992564.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_992565.1	identified by match to protein family HMM PF01037
YP_992567.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_992568.1	identified by match to protein family HMM PF03055
YP_992570.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992571.1	identified by match to protein family HMM PF00106
YP_992575.1	identified by match to protein family HMM PF06073
YP_992576.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_992578.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_992581.1	identified by match to protein family HMM PF00011
YP_992582.1	identified by match to protein family HMM PF00011
YP_992585.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_992586.1	identified by match to protein family HMM PF00725; match to protein family HMM PF02737
YP_992587.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992588.1	identified by match to protein family HMM PF03817; match to protein family HMM TIGR00807
YP_992589.1	identified by match to protein family HMM PF03818; match to protein family HMM TIGR00808
YP_992591.1	identified by match to protein family HMM TIGR01110
YP_992592.1	acyl carrier protein of malonate decarboxylase
YP_992593.1	The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A
YP_992594.1	identified by match to protein family HMM PF06833; match to protein family HMM TIGR03134
YP_992595.1	catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein
YP_992596.1	identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132
YP_992597.1	identified by match to protein family HMM TIGR03131
YP_992602.1	identified by match to protein family HMM PF00665
YP_992603.1	identified by match to protein family HMM PF01527
YP_992604.1	identified by match to protein family HMM PF00043
YP_992605.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992606.1	identified by match to protein family HMM PF02694
YP_992607.1	3'-5' exonuclease of DNA polymerase III
YP_992608.1	identified by match to protein family HMM PF00075
YP_992610.1	identified by match to protein family HMM PF00753
YP_992611.1	identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474
YP_992612.1	identified by match to protein family HMM PF07690
YP_992615.1	identified by match to protein family HMM PF00165
YP_992616.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_992617.1	identified by match to protein family HMM PF01810
YP_992618.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_992619.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_992621.1	identified by match to protein family HMM PF01985
YP_992622.1	identified by match to protein family HMM PF01728
YP_992623.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_992624.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_992625.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_992626.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_992627.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_992628.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_992629.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_992630.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_992631.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154
YP_992632.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966
YP_992634.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_992636.1	identified by match to protein family HMM PF02541
YP_992643.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249
YP_992650.1	identified by match to protein family HMM PF00501
YP_992653.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_992654.1	identified by match to protein family HMM PF01527
YP_992655.1	identified by match to protein family HMM PF00665
YP_992659.1	identified by match to protein family HMM PF05488
YP_992660.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_992661.1	identified by match to protein family HMM PF00155
YP_992666.1	identified by match to protein family HMM PF00128
YP_992667.1	identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217
YP_992668.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402
YP_992669.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_992670.1	identified by match to protein family HMM TIGR01515
YP_992671.1	identified by match to protein family HMM PF02922
YP_992672.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457
YP_992673.1	identified by match to protein family HMM PF00128
YP_992675.1	identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840
YP_992685.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992686.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_992688.1	identified by match to protein family HMM PF05666
YP_992691.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_992693.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_992694.1	identified by match to protein family HMM PF00691
YP_992695.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_992696.1	identified by match to protein family HMM PF00816
YP_992700.1	identified by match to protein family HMM PF00652; match to protein family HMM PF01344
YP_992705.1	identified by match to protein family HMM PF05947
YP_992707.1	identified by match to protein family HMM PF05488
YP_992709.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_992711.1	identified by match to protein family HMM PF00665
YP_992712.1	identified by match to protein family HMM PF01527
YP_992715.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_992719.1	identified by match to protein family HMM PF04909
YP_992720.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_992723.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992728.1	identified by match to protein family HMM PF05229
YP_992729.1	identified by match to protein family HMM PF05229
YP_992731.1	identified by match to protein family HMM PF00577
YP_992732.1	identified by match to protein family HMM PF05229
YP_992734.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_992735.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545
YP_992737.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_992738.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_992740.1	identified by match to protein family HMM PF00529
YP_992742.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_992743.1	identified by match to protein family HMM PF04185
YP_992744.1	identified by match to protein family HMM PF03150
YP_992747.1	identified by match to protein family HMM PF00933; match to protein family HMM PF01915
YP_992750.1	identified by match to protein family HMM PF00293
YP_992751.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_992754.1	identified by match to protein family HMM PF02515
YP_992755.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_992756.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992757.1	identified by match to protein family HMM PF06779
YP_992758.1	identified by match to protein family HMM PF01527
YP_992759.1	identified by match to protein family HMM PF00665
YP_992761.1	identified by match to protein family HMM PF00089
YP_992763.1	identified by match to protein family HMM PF00293
YP_992764.1	identified by match to protein family HMM PF01906
YP_992766.1	identified by match to protein family HMM PF00465
YP_992768.1	identified by match to protein family HMM PF03061
YP_992769.1	identified by match to protein family HMM PF02653
YP_992770.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_992771.1	identified by match to protein family HMM PF00005
YP_992772.1	identified by match to protein family HMM PF06845
YP_992773.1	identified by match to protein family HMM PF01261
YP_992774.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_992775.1	identified by match to protein family HMM PF00294
YP_992776.1	identified by match to protein family HMM PF00005
YP_992777.1	identified by match to protein family HMM PF02653
YP_992779.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_992780.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_992784.1	identified by match to protein family HMM PF01206
YP_992786.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_992787.1	identified by match to protein family HMM PF01476
YP_992788.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226
YP_992790.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_992791.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_992792.1	identified by match to protein family HMM PF00580
YP_992793.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_992794.1	identified by match to protein family HMM PF07690
YP_992795.1	identified by match to protein family HMM PF00015
YP_992796.1	identified by match to protein family HMM PF00529
YP_992797.1	identified by match to protein family HMM PF07869
YP_992798.1	identified by match to protein family HMM PF04632
YP_992799.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_992800.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992802.1	identified by match to protein family HMM PF00149
YP_992803.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_992805.1	identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755
YP_992806.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_992809.1	identified by match to protein family HMM PF00571
YP_992810.1	identified by match to protein family HMM PF01553; match to protein family HMM PF07690
YP_992812.2	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_992814.1	identified by match to protein family HMM PF00665
YP_992815.1	identified by match to protein family HMM PF01804
YP_992816.1	identified by match to protein family HMM PF00665
YP_992817.1	identified by match to protein family HMM PF01527
YP_992825.1	identified by match to protein family HMM PF03969
YP_992826.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_992827.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_992828.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_992829.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_992831.1	identified by match to protein family HMM PF01047
YP_992832.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_992833.1	identified by match to protein family HMM PF00529
YP_992834.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_992835.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_992836.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_992837.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_992838.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_992839.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_992840.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_992841.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_992842.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992846.1	identified by match to protein family HMM PF02698
YP_992849.1	identified by match to protein family HMM PF03992
YP_992850.1	identified by match to protein family HMM PF01527
YP_992851.1	identified by match to protein family HMM PF00665
YP_992856.1	identified by match to protein family HMM PF00665
YP_992857.1	identified by match to protein family HMM PF01527
YP_992858.1	identified by match to protein family HMM PF05665
YP_992859.1	identified by match to protein family HMM PF00376
YP_992860.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_992861.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_992862.2	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_992863.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_992864.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_992865.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198
YP_992866.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_992868.1	identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_992869.1	identified by match to protein family HMM PF01042
YP_992870.1	identified by match to protein family HMM PF00561
YP_992871.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992872.1	identified by match to protein family HMM PF07366
YP_992873.1	identified by match to protein family HMM PF01522
YP_992874.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_992875.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_992876.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_992877.1	identified by match to protein family HMM PF00196
YP_992882.1	identified by match to protein family HMM PF03061
YP_992883.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_992884.1	identified by match to protein family HMM PF01266; match to protein family HMM PF05187
YP_992885.1	identified by match to protein family HMM PF01527
YP_992886.1	identified by match to protein family HMM PF00665
YP_992889.1	identified by match to protein family HMM PF02373
YP_992891.1	identified by match to protein family HMM PF00550; match to protein family HMM PF00975
YP_992893.1	identified by match to protein family HMM PF00267
YP_992894.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_992895.1	identified by match to protein family HMM PF00892
YP_992896.1	identified by match to protein family HMM PF01584
YP_992897.1	identified by match to protein family HMM PF00015
YP_992900.1	activates fatty acids by binding to coenzyme A
YP_992901.1	identified by match to protein family HMM PF07690
YP_992904.1	identified by match to protein family HMM PF04069
YP_992905.1	identified by match to protein family HMM PF00528
YP_992906.1	identified by match to protein family HMM PF00005
YP_992907.1	identified by match to protein family HMM PF00528
YP_992910.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_992911.1	catalyzes the degradation of arginine to citruline and ammonia
YP_992912.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_992913.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_992914.1	identified by match to protein family HMM PF00106
YP_992915.1	identified by match to protein family HMM PF03928
YP_992916.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_992917.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_992918.1	identified by match to protein family HMM PF01047
YP_992919.1	identified by match to protein family HMM PF01094
YP_992921.1	identified by match to protein family HMM PF01047
YP_992922.1	identified by match to protein family HMM PF07690
YP_992923.1	identified by match to protein family HMM PF02638
YP_992924.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_992925.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_992926.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_992927.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469
YP_992928.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435
YP_992929.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_992930.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_992931.1	identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466
YP_992932.1	identified by match to protein family HMM PF02839
YP_992936.1	identified by match to protein family HMM PF02230
YP_992939.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_992941.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_992942.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475
YP_992943.1	identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_992944.1	catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3
YP_992945.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_992946.1	identified by match to protein family HMM PF01656; match to protein family HMM PF07685
YP_992948.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_992950.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_992951.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_992952.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194
YP_992954.1	identified by match to protein family HMM PF01497
YP_992956.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_992957.1	identified by match to protein family HMM PF00005
YP_992958.1	identified by match to protein family HMM PF02668
YP_992959.1	identified by match to protein family HMM PF03621
YP_992960.1	RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease
YP_992963.1	identified by match to protein family HMM PF00106
YP_992964.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_992965.1	identified by match to protein family HMM PF00107
YP_992966.1	identified by match to protein family HMM PF02653
YP_992967.1	identified by match to protein family HMM PF00005
YP_992968.1	identified by match to protein family HMM PF00532
YP_992969.1	identified by match to protein family HMM PF00165
YP_992973.1	identified by match to protein family HMM PF00665
YP_992974.1	identified by match to protein family HMM PF01527
YP_992977.1	identified by match to protein family HMM PF00005
YP_992979.1	identified by match to protein family HMM PF00345
YP_992980.1	identified by match to protein family HMM PF00577
YP_992982.1	identified by match to protein family HMM PF00419
YP_992986.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_992987.1	MexY; AmrB; involved in resistance to antibiotics; inner membrane protein; belongs to RND (resistance, nodulation, cell division) family of transporters; functions along with MexX and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_992988.1	MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_992989.1	identified by match to protein family HMM PF00440
YP_992991.1	identified by match to protein family HMM PF01551
YP_992992.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_992993.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_992996.1	identified by match to protein family HMM PF00497
YP_992998.1	identified by match to protein family HMM PF07811
YP_992999.1	identified by match to protein family HMM PF07811
YP_993000.1	identified by match to protein family HMM PF07719; match to protein family HMM PF07721
YP_993001.1	identified by match to protein family HMM PF00482
YP_993002.1	identified by match to protein family HMM PF00482
YP_993003.1	identified by match to protein family HMM PF00437
YP_993006.1	identified by match to protein family HMM PF00263
YP_993007.1	identified by match to protein family HMM PF06981
YP_993008.1	identified by match to protein family HMM PF01478
YP_993009.1	identified by match to protein family HMM PF04964
YP_993010.1	identified by match to protein family HMM PF00528
YP_993011.1	identified by match to protein family HMM PF00005
YP_993014.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883
YP_993015.1	identified by match to protein family HMM PF04293
YP_993016.1	identified by match to protein family HMM PF04285
YP_993017.1	identified by match to protein family HMM PF06798
YP_993018.1	identified by match to protein family HMM PF00665
YP_993019.1	identified by match to protein family HMM PF01527
YP_993020.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993021.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM TIGR00968
YP_993022.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_993023.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_993024.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_993025.1	Represses a number of genes involved in the response to DNA damage
YP_993028.1	identified by match to protein family HMM PF00582
YP_993029.1	involved in the export of lipooligosaccharides during nodulation
YP_993030.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291
YP_993032.1	identified by match to protein family HMM PF03773
YP_993033.1	identified by match to protein family HMM PF00248
YP_993034.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_993035.1	identified by match to protein family HMM PF01638
YP_993038.1	identified by match to protein family HMM PF00375
YP_993040.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742
YP_993041.1	identified by match to protein family HMM PF00665
YP_993042.1	identified by match to protein family HMM PF01527
YP_993045.1	identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638
YP_993046.1	identified by match to protein family HMM PF00005
YP_993047.1	identified by match to protein family HMM PF00528
YP_993048.1	catalyzes the release of sulfite from alkanesulfonates
YP_993052.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_993053.1	identified by match to protein family HMM PF00893
YP_993054.1	identified by match to protein family HMM PF03928
YP_993055.1	identified by match to protein family HMM PF00293
YP_993056.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_993057.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_993058.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_993059.1	identified by match to protein family HMM PF00497
YP_993060.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_993061.1	identified by match to protein family HMM PF01527
YP_993062.1	identified by match to protein family HMM PF00665
YP_993063.1	identified by match to protein family HMM PF01408
YP_993064.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_993065.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_993066.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_993068.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_993069.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_993071.1	identified by match to protein family HMM PF01527
YP_993072.1	identified by match to protein family HMM PF00665
YP_993074.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_993076.1	identified by match to protein family HMM PF04185
YP_993078.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740
YP_993080.1	identified by match to protein family HMM PF00583
YP_993081.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_993082.1	identified by match to protein family HMM PF00440
YP_993084.1	identified by match to protein family HMM PF00501
YP_993088.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_993090.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_993093.1	identified by match to protein family HMM PF07719
YP_993094.1	identified by match to protein family HMM PF00482
YP_993095.1	identified by match to protein family HMM PF00482
YP_993096.1	identified by match to protein family HMM PF00437
YP_993098.1	identified by match to protein family HMM PF00263
YP_993099.1	identified by match to protein family HMM PF06981
YP_993100.1	identified by match to protein family HMM PF07811
YP_993102.1	identified by match to protein family HMM PF01527
YP_993103.1	identified by match to protein family HMM PF00665
YP_993104.1	identified by match to protein family HMM PF00528
YP_993105.1	identified by match to protein family HMM PF00528
YP_993106.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01187
YP_993107.1	identified by match to protein family HMM PF01547
YP_993108.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_993109.1	identified by match to protein family HMM PF06945
YP_993110.1	identified by match to protein family HMM PF03922
YP_993111.1	identified by match to protein family HMM PF03060
YP_993112.1	identified by match to protein family HMM PF00171
YP_993114.1	identified by match to protein family HMM PF00005
YP_993115.1	identified by match to protein family HMM PF05170
YP_993116.1	identified by match to protein family HMM PF00005
YP_993117.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_993121.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_993122.1	catalyzes the formation of L-homocysteine from cystathionine
YP_993124.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_993125.1	identified by match to protein family HMM PF00294
YP_993126.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_993127.1	identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848
YP_993128.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_993129.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_993130.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838
YP_993131.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_993132.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_993135.1	identified by match to protein family HMM PF04325
YP_993138.1	identified by match to protein family HMM PF00575
YP_993139.1	identified by match to protein family HMM PF02705
YP_993141.1	identified by match to protein family HMM PF00156
YP_993142.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_993143.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_993145.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932
YP_993146.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_993147.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_993148.1	Stimulates the elongation of poly(A) tails
YP_993149.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_993153.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_993154.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_993156.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_993157.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_993158.1	identified by match to protein family HMM PF01027
YP_993159.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_993160.1	identified by match to protein family HMM PF03372
YP_993163.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_993164.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_993165.1	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080
YP_993166.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_993167.1	identified by match to protein family HMM PF02515
YP_993168.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_993169.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_993170.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_993172.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_993174.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_993175.1	identified by match to protein family HMM PF00376
YP_993176.1	identified by match to protein family HMM PF07690
YP_993177.1	identified by match to protein family HMM PF06167
YP_993178.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_993181.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_993182.1	identified by match to protein family HMM PF02627
YP_993183.1	identified by match to protein family HMM PF00376
YP_993185.1	identified by match to protein family HMM PF06078
YP_993186.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_993187.1	identified by match to protein family HMM PF02082
YP_993188.1	identified by match to protein family HMM PF01152
YP_993189.1	identified by match to protein family HMM PF02391
YP_993190.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_993191.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_993193.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_993194.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_993195.1	identified by match to protein family HMM PF00155
YP_993196.1	identified by match to protein family HMM PF04430
YP_993197.1	identified by match to protein family HMM PF02366
YP_993199.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_993200.1	identified by match to protein family HMM PF00535
YP_993201.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911
YP_993202.1	identified by match to protein family HMM PF01370
YP_993203.1	identified by match to protein family HMM PF01522
YP_993204.1	identified by match to protein family HMM PF00578
YP_993205.1	identified by match to protein family HMM PF02562
YP_993206.1	identified by match to protein family HMM PF00877
YP_993207.1	identified by match to protein family HMM PF01384
YP_993208.1	identified by match to protein family HMM PF01865
YP_993209.1	unwinds double stranded DNA
YP_993211.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_993212.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_993214.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_993216.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_993217.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_993218.1	identified by match to protein family HMM PF00116
YP_993219.1	identified by match to protein family HMM PF00665
YP_993220.1	identified by match to protein family HMM PF01527
YP_993221.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520
YP_993223.1	identified by match to protein family HMM PF07769
YP_993227.1	identified by match to protein family HMM PF00534
YP_993229.1	identified by match to protein family HMM PF00924
YP_993231.1	identified by match to protein family HMM PF00023
YP_993232.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_993233.1	identified by match to protein family HMM PF00583
YP_993234.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_993235.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_993236.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_993237.1	identified by match to protein family HMM PF01571
YP_993238.1	identified by match to protein family HMM PF05742
YP_993239.1	identified by match to protein family HMM PF00583
YP_993240.1	identified by match to protein family HMM PF07859
YP_993241.1	identified by match to protein family HMM PF00107
YP_993242.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_993243.1	identified by match to protein family HMM PF07876
YP_993245.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_993246.1	identified by match to protein family HMM PF00857
YP_993247.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_993249.1	activates fatty acids by binding to coenzyme A
YP_993250.1	identified by match to protein family HMM PF02696
YP_993251.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_993252.1	Involved in cell division; probably involved in intracellular septation
YP_993253.1	identified by match to protein family HMM PF01722
YP_993254.1	identified by match to protein family HMM PF00639
YP_993255.1	identified by match to protein family HMM PF00583
YP_993256.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_993258.1	identified by match to protein family HMM PF01266
YP_993259.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_993261.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_993262.1	identified by match to protein family HMM PF00005
YP_993263.1	identified by match to protein family HMM PF00657
YP_993264.1	identified by match to protein family HMM PF00639
YP_993272.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_993273.1	binds and unfolds substrates as part of the ClpXP protease
YP_993274.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_993275.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_993278.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_993279.1	identified by match to protein family HMM PF01047
YP_993281.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_993282.1	identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967
YP_993283.1	identified by match to protein family HMM PF00267
YP_993284.1	identified by match to protein family HMM PF07690
YP_993285.1	identified by match to protein family HMM PF00850
YP_993288.1	identified by match to protein family HMM PF00665
YP_993289.1	identified by match to protein family HMM PF01527
YP_993291.1	identified by match to protein family HMM PF00494
YP_993292.1	identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409
YP_993296.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_993297.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_993298.1	identified by match to protein family HMM PF00578
YP_993299.1	identified by match to protein family HMM PF02627
YP_993302.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_993303.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_993304.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_993306.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_993307.1	identified by match to protein family HMM PF00291
YP_993312.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_993314.1	identified by match to protein family HMM PF04012
YP_993316.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_993318.1	identified by match to protein family HMM PF01609
YP_993320.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_993321.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_993322.1	identified by match to protein family HMM TIGR03164
YP_993323.1	identified by match to protein family HMM PF01522
YP_993324.1	identified by match to protein family HMM PF01177
YP_993325.1	identified by match to protein family HMM PF02133
YP_993326.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_993327.1	identified by match to protein family HMM PF01610
YP_993328.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_993329.1	identified by match to protein family HMM PF00383
YP_993337.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_993340.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_993342.1	identified by match to protein family HMM PF05988
YP_993345.1	identified by match to protein family HMM PF00892
YP_993346.1	identified by match to protein family HMM PF03658
YP_993347.1	identified by match to protein family HMM PF03364
YP_993348.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_993349.1	identified by match to protein family HMM PF01145
YP_993350.1	identified by match to protein family HMM PF01957
YP_993351.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_993352.1	identified by match to protein family HMM PF05023
YP_993353.1	identified by match to protein family HMM PF00082
YP_993355.1	identified by match to protein family HMM PF03618
YP_993356.1	identified by match to protein family HMM PF00588
YP_993357.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_993358.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_993359.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_993360.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_993361.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_993362.1	identified by match to protein family HMM PF03938
YP_993363.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_993365.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_993366.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_993367.1	identified by match to protein family HMM PF01148
YP_993368.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_993369.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_993370.1	Catalyzes the phosphorylation of UMP to UDP
YP_993371.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_993372.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_993374.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_993375.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_993376.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_993377.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_993378.1	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_993381.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_993382.1	identified by match to protein family HMM PF00892
YP_993384.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_993385.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_993386.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_993387.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_993388.1	involved in methylation of ribosomal protein L3
YP_993389.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_993390.1	identified by match to protein family HMM PF00255
YP_993391.1	identified by match to protein family HMM PF00005
YP_993393.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_993394.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_993395.1	identified by match to protein family HMM PF07690
YP_993396.1	identified by match to protein family HMM TIGR00097
YP_993398.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_993399.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_993400.1	identified by match to protein family HMM PF00814
YP_993401.1	identified by match to protein family HMM PF00887
YP_993402.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_993403.1	identified by match to protein family HMM PF01609
YP_993404.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_993405.1	identified by match to protein family HMM PF00582
YP_993406.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993407.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_993408.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_993410.1	identified by match to protein family HMM PF03674
YP_993411.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_993412.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_993414.1	identified by match to protein family HMM PF00583
YP_993416.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_993417.1	identified by match to protein family HMM PF01734
YP_993418.1	identified by match to protein family HMM PF00877
YP_993419.1	identified by match to protein family HMM PF00005
YP_993420.1	identified by match to protein family HMM PF00528
YP_993421.1	identified by match to protein family HMM PF00528
YP_993422.1	identified by match to protein family HMM PF00496
YP_993424.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_993427.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_993429.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_993430.1	identified by match to protein family HMM PF00037
YP_993431.1	identified by match to protein family HMM PF00440
YP_993432.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_993435.1	identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655
YP_993436.1	identified by match to protein family HMM PF00291
YP_993437.1	identified by match to protein family HMM PF00288
YP_993438.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_993439.1	identified by match to protein family HMM PF00535
YP_993440.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_993441.1	identified by match to protein family HMM PF01757
YP_993443.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_993444.1	identified by match to protein family HMM PF00456
YP_993448.1	identified by match to protein family HMM PF02668
YP_993450.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_993451.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_993452.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_993453.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733
YP_993454.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_993457.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730
YP_993458.1	identified by match to protein family HMM PF00873
YP_993461.1	identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414
YP_993466.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_993468.1	identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_993469.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_993470.1	identified by match to protein family HMM PF00730
YP_993471.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_993472.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_993473.1	identified by match to protein family HMM PF00160
YP_993474.1	identified by match to protein family HMM PF00160
YP_993475.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_993477.1	identified by match to protein family HMM PF00132
YP_993479.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050
YP_993480.1	identified by match to protein family HMM PF00459
YP_993485.1	This protein performs the mismatch recognition step during the DNA repair process
YP_993489.1	identified by match to protein family HMM PF08007
YP_993490.1	identified by match to protein family HMM PF00753
YP_993492.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_993494.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_993495.1	identified by match to protein family HMM PF02163
YP_993496.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_993497.1	identified by match to protein family HMM PF02811
YP_993498.1	identified by match to protein family HMM PF00561
YP_993500.1	identified by match to protein family HMM PF04305
YP_993501.1	identified by match to protein family HMM PF00132
YP_993502.1	identified by match to protein family HMM PF01430
YP_993504.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_993505.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_993506.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_993507.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_993510.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_993511.1	identified by match to protein family HMM PF01026
YP_993512.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211
YP_993513.1	identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_993517.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_993518.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
YP_993519.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_993521.1	identified by match to protein family HMM PF05433
YP_993523.1	identified by match to protein family HMM PF04384
YP_993524.1	identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007
YP_993525.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_993526.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_993527.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011
YP_993528.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999
YP_993529.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_993530.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_993531.1	identified by match to protein family HMM PF01451
YP_993533.1	identified by match to protein family HMM PF00037
YP_993534.1	identified by match to protein family HMM PF02754
YP_993535.1	identified by match to protein family HMM PF01614
YP_993536.1	identified by match to protein family HMM PF01609
YP_993537.1	identified by match to protein family HMM TIGR01841
YP_993538.1	identified by match to protein family HMM PF00768
YP_993539.1	identified by match to protein family HMM PF01609
YP_993540.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_993541.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348
YP_993542.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_993543.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_993544.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_993545.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_993547.1	identified by match to protein family HMM PF01432
YP_993548.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_993550.1	identified by match to protein family HMM PF07690
YP_993551.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886
YP_993552.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580
YP_993553.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660
YP_993554.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_993555.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_993556.1	identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_993557.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967
YP_993558.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_993559.1	identified by match to protein family HMM PF01609
YP_993561.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818
YP_993562.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_993563.1	identified by match to protein family HMM PF01609
YP_993564.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_993566.1	identified by match to protein family HMM PF00994
YP_993570.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_993571.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_993572.1	identified by match to protein family HMM PF04362
YP_993573.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_993574.1	identified by match to protein family HMM PF02515
YP_993575.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_993576.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993577.1	identified by match to protein family HMM PF00665
YP_993578.1	identified by match to protein family HMM PF01527
YP_993580.1	identified by match to protein family HMM PF00543
YP_993581.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_993582.1	identified by match to protein family HMM PF04339
YP_993585.1	identified by match to protein family HMM PF01541
YP_993586.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_993587.1	identified by match to protein family HMM PF00171
YP_993588.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_993589.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_993591.1	identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_993592.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis
YP_993593.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_993595.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_993596.1	identified by match to protein family HMM PF01609
YP_993597.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05175
YP_993599.1	identified by match to protein family HMM PF05229
YP_993600.1	identified by match to protein family HMM PF05229
YP_993603.1	identified by match to protein family HMM PF00577
YP_993604.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_993605.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_993607.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711
YP_993608.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_993609.1	identified by match to protein family HMM PF00080
YP_993610.1	identified by match to protein family HMM PF01656
YP_993611.1	identified by match to protein family HMM PF00691; match to protein family HMM PF05433
YP_993613.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_993614.1	identified by match to protein family HMM PF00891
YP_993616.1	identified by match to protein family HMM PF04357
YP_993617.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_993619.1	identified by match to protein family HMM PF02616
YP_993621.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_993622.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_993623.1	identified by match to protein family HMM PF01656
YP_993624.1	identified by match to protein family HMM PF07681
YP_993625.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_993626.1	identified by match to protein family HMM PF02283
YP_993627.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_993628.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_993629.1	identified by match to protein family HMM PF01497
YP_993631.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162
YP_993632.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_993633.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_993634.1	identified by match to protein family HMM PF00005
YP_993635.1	identified by match to protein family HMM PF01032
YP_993636.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_993638.1	identified by match to protein family HMM PF05164
YP_993639.1	identified by match to protein family HMM PF04543
YP_993640.1	identified by match to protein family HMM PF04402
YP_993641.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_993642.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993643.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_993644.1	identified by match to protein family HMM PF01609
YP_993645.1	identified by match to protein family HMM PF00034
YP_993647.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_993648.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_993649.1	identified by match to protein family HMM PF03739
YP_993650.1	identified by match to protein family HMM PF03739
YP_993651.1	identified by match to protein family HMM PF01903
YP_993652.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_993653.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034
YP_993654.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_993655.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_993656.1	identified by match to protein family HMM PF06073
YP_993657.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_993658.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993660.1	identified by match to protein family HMM PF01527
YP_993661.1	identified by match to protein family HMM PF00665
YP_993662.1	identified by match to protein family HMM PF00120
YP_993663.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_993667.1	identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017
YP_993668.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_993669.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_993670.1	identified by match to protein family HMM PF05962
YP_993671.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_993672.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018
YP_993673.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_993677.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967
YP_993681.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_993682.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_993683.1	identified by match to protein family HMM PF00487
YP_993686.1	identified by match to protein family HMM PF01883
YP_993688.1	identified by match to protein family HMM PF05940
YP_993689.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_993691.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495
YP_993694.1	identified by match to protein family HMM PF01136
YP_993695.1	identified by match to protein family HMM PF01136
YP_993697.1	identified by match to protein family HMM PF03060
YP_993699.1	identified by match to protein family HMM PF00027
YP_993700.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_993701.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_993704.1	identified by match to protein family HMM PF05940
YP_993705.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_993706.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_993707.1	identified by match to protein family HMM PF01458
YP_993708.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_993709.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_993710.1	identified by match to protein family HMM PF01883
YP_993712.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_993713.1	identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481
YP_993716.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_993718.1	identified by match to protein family HMM PF00115
YP_993720.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_993721.1	identified by match to protein family HMM PF00487
YP_993723.1	identified by match to protein family HMM PF00497
YP_993725.1	identified by match to protein family HMM PF00043
YP_993726.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_993727.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_993728.1	a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH
YP_993729.1	identified by match to protein family HMM PF04958
YP_993730.1	identified by match to protein family HMM PF04958
YP_993731.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_993734.1	identified by match to protein family HMM PF00165
YP_993735.1	identified by match to protein family HMM PF00005
YP_993736.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_993737.1	identified by match to protein family HMM PF01527
YP_993738.1	identified by match to protein family HMM PF00665
YP_993739.1	identified by match to protein family HMM PF01094
YP_993741.1	identified by match to protein family HMM PF01266
YP_993744.1	identified by match to protein family HMM PF00534
YP_993747.1	identified by match to protein family HMM PF00005
YP_993748.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_993749.1	identified by match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_993751.1	identified by match to protein family HMM PF02630
YP_993752.1	identified by match to protein family HMM PF04314
YP_993754.1	identified by match to protein family HMM PF00583
YP_993756.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_993757.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993759.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_993761.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_993763.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_993764.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_993765.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_993766.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_993767.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_993768.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_993769.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_993770.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_993771.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_993772.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_993773.1	identified by match to protein family HMM PF05768
YP_993774.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_993775.1	identified by match to protein family HMM PF03888
YP_993777.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_993779.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_993780.1	carries the fatty acid chain in fatty acid biosynthesis
YP_993781.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_993782.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_993783.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_993784.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_993786.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_993787.1	identified by match to protein family HMM PF02620
YP_993788.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_993789.1	identified by match to protein family HMM PF00590
YP_993790.1	identified by match to protein family HMM PF01343
YP_993791.1	identified by match to protein family HMM PF00355
YP_993794.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_993795.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_993796.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_993797.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_993798.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_993800.1	identified by match to protein family HMM PF00583
YP_993801.1	identified by match to protein family HMM PF02646
YP_993802.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_993804.1	identified by match to protein family HMM PF02589
YP_993805.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_993807.1	identified by match to protein family HMM PF00037
YP_993808.1	identified by match to protein family HMM PF05981
YP_993813.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_993814.1	identified by match to protein family HMM PF01527
YP_993815.1	identified by match to protein family HMM PF00665
YP_993817.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_993818.1	identified by match to protein family HMM PF03061
YP_993821.1	identified by match to protein family HMM PF01022
YP_993824.1	identified by match to protein family HMM PF01609
YP_993825.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_993826.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_993831.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_993832.1	identified by match to protein family HMM PF00186
YP_993833.1	identified by match to protein family HMM PF01609
YP_993834.1	identified by match to protein family HMM PF01523
YP_993835.1	identified by match to protein family HMM PF04751
YP_993836.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_993837.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_993838.1	identified by match to protein family HMM PF01435
YP_993839.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_993841.1	catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid
YP_993842.1	identified by match to protein family HMM PF00293
YP_993843.1	identified by match to protein family HMM PF00583
YP_993844.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_993845.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_993846.1	Essential for efficient processing of 16S rRNA
YP_993847.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_993851.1	identified by match to protein family HMM PF04055
YP_993852.1	identified by match to protein family HMM PF01037
YP_993853.1	catalyzes the oxidative deamination of D-amino acids
YP_993855.1	identified by match to protein family HMM PF02770
YP_993856.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_993857.1	identified by match to protein family HMM PF01012
YP_993858.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_993859.1	identified by match to protein family HMM PF00528
YP_993860.1	part of the metNIQ transport system for methionine
YP_993861.1	identified by match to protein family HMM PF00561
YP_993862.1	identified by match to protein family HMM PF00850
YP_993863.1	identified by match to protein family HMM TIGR02282
YP_993864.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_993867.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197
YP_993868.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198
YP_993869.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_993870.1	identified by match to protein family HMM PF00515
YP_993872.1	identified by match to protein family HMM PF01609
YP_993873.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_993874.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_993875.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_993876.1	fusion of tyrA/aroA
YP_993877.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807
YP_993878.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_993880.1	negatively supercoils closed circular double-stranded DNA
YP_993883.1	identified by match to protein family HMM PF00691
YP_993884.1	Involved in ubiquinone biosynthesis
YP_993885.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_993886.1	identified by match to protein family HMM PF00665
YP_993887.1	identified by match to protein family HMM PF01527
YP_993891.1	identified by match to protein family HMM PF00126
YP_993894.1	identified by match to protein family HMM PF01512
YP_993895.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_993898.1	identified by match to protein family HMM PF01494
YP_993899.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_993900.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_993902.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_993903.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_993904.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_993906.1	identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964
YP_993907.1	catalyzes the formation of inosine from adenosine
YP_993908.1	identified by match to protein family HMM PF00860
YP_993909.1	Catalyzes the deamination of guanine
YP_993911.1	identified by match to protein family HMM PF01169
YP_993914.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414
YP_993916.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_993917.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_993918.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_993919.1	identified by match to protein family HMM PF01610
YP_993925.1	identified by match to protein family HMM PF04226
YP_993928.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_993932.1	catalyzes the interconversion of chorismate to prephenate
YP_993935.1	identified by match to protein family HMM PF00665
YP_993936.1	identified by match to protein family HMM PF01527
YP_993937.1	identified by match to protein family HMM PF00665
YP_993938.1	identified by match to protein family HMM PF01527
YP_993940.1	identified by match to protein family HMM PF01609
YP_993941.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_993942.1	identified by match to protein family HMM PF00254
YP_993943.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_993944.1	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009
YP_993945.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_993946.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_993947.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_993948.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_993950.1	identified by match to protein family HMM PF00487
YP_993951.1	identified by match to protein family HMM PF00924
YP_993952.1	identified by match to protein family HMM PF01189
YP_993953.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_993954.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_993955.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_993956.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_993957.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_993958.1	catalyzes the formation of dUMP from dUTP
YP_993959.1	identified by match to protein family HMM PF03988
YP_993962.1	identified by match to protein family HMM PF00665
YP_993963.1	identified by match to protein family HMM PF01527
YP_993965.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_993966.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_993967.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_993968.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_993969.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_993971.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_993972.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_993973.1	identified by match to protein family HMM PF03741
YP_993974.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_993975.1	identified by match to protein family HMM PF04932
YP_993978.1	identified by match to protein family HMM TIGR01352
YP_993979.1	identified by match to protein family HMM PF00665
YP_993980.1	identified by match to protein family HMM PF01527
YP_993981.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM TIGR00229
YP_993985.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01966
YP_993986.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707
YP_993987.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_993989.1	identified by match to protein family HMM PF04828
YP_993990.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_993991.1	identified by match to protein family HMM PF05425
YP_993993.1	identified by match to protein family HMM PF00034
YP_993994.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_993997.1	identified by match to protein family HMM PF01019
YP_993998.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_994001.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_994002.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_994003.1	identified by match to protein family HMM PF00230
YP_994005.1	identified by match to protein family HMM PF01042
YP_994007.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_994008.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM PF01171; match to protein family HMM TIGR01536
YP_994009.1	identified by match to protein family HMM PF02655
YP_994010.1	identified by match to protein family HMM PF00892
YP_994011.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_994012.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_994013.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_994014.1	identified by match to protein family HMM PF07690
YP_994015.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994016.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_994017.1	identified by match to protein family HMM PF02562
YP_994019.2	contains unknown N-terminal domain/putative metalloprotease C-terminal domain
YP_994020.1	identified by match to protein family HMM PF04752
YP_994021.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03471
YP_994022.1	Transfers the fatty acyl group on membrane lipoproteins
YP_994023.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_994024.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_994025.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_994026.1	identified by match to protein family HMM PF01553
YP_994027.1	identified by match to protein family HMM PF01863
YP_994028.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068
YP_994029.1	identified by match to protein family HMM PF00892
YP_994030.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_994031.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_994032.1	identified by match to protein family HMM PF00639
YP_994033.1	identified by match to protein family HMM PF04453
YP_994034.1	identified by match to protein family HMM PF01636
YP_994035.1	identified by match to protein family HMM PF00483
YP_994036.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_994038.1	identified by match to protein family HMM PF03061
YP_994039.1	identified by match to protein family HMM TIGR02664
YP_994040.1	identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129
YP_994041.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_994042.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_994043.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_994044.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_994046.1	identified by match to protein family HMM PF00614
YP_994047.1	converts dATP to dAMP and pyrophosphate
YP_994048.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_994049.1	identified by match to protein family HMM PF04367
YP_994050.1	identified by match to protein family HMM TIGR02605
YP_994051.1	identified by match to protein family HMM PF05724
YP_994053.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_994054.1	identified by match to protein family HMM PF06843
YP_994055.1	identified by match to protein family HMM PF04280
YP_994056.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_994057.1	identified by match to protein family HMM PF06155
YP_994058.1	identified by match to protein family HMM PF01230
YP_994059.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913
YP_994062.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_994063.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_994064.1	identified by match to protein family HMM PF01042
YP_994066.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969
YP_994067.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_994069.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_994070.1	identified by match to protein family HMM PF01047
YP_994071.1	identified by match to protein family HMM PF07690
YP_994073.1	identified by match to protein family HMM PF07859
YP_994074.1	identified by match to protein family HMM PF07452
YP_994075.1	identified by match to protein family HMM PF01609
YP_994076.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_994077.1	identified by match to protein family HMM PF03976
YP_994078.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_994079.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_994080.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_994081.1	functions in MreBCD complex in some organisms
YP_994082.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_994083.1	identified by match to protein family HMM PF04093
YP_994084.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_994085.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_994087.1	identified by match to protein family HMM PF03328
YP_994089.1	identified by match to protein family HMM PF01242
YP_994091.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_994093.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954
YP_994094.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_994096.1	identified by match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_994097.1	identified by match to protein family HMM PF01435
YP_994098.1	identified by match to protein family HMM PF01810
YP_994100.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_994101.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_994103.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_994104.1	identified by match to protein family HMM PF00085
YP_994105.1	decatenates replicating daughter chromosomes
YP_994106.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994107.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_994109.1	identified by match to protein family HMM PF01734
YP_994110.1	identified by match to protein family HMM PF03061
YP_994112.1	identified by match to protein family HMM PF01610
YP_994113.1	identified by match to protein family HMM PF01527
YP_994114.1	identified by match to protein family HMM PF00665
YP_994117.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_994120.1	identified by match to protein family HMM PF00795
YP_994121.1	identified by match to protein family HMM PF00850
YP_994122.1	identified by match to protein family HMM PF01547
YP_994123.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994127.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_994128.1	involved in the first step of glutathione biosynthesis
YP_994129.1	identified by match to protein family HMM PF00730; match to protein family HMM PF06029
YP_994130.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_994131.1	identified by match to protein family HMM PF00903
YP_994132.1	identified by match to protein family HMM PF07152
YP_994134.1	identified by match to protein family HMM PF01527
YP_994135.1	identified by match to protein family HMM PF00665
YP_994136.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_994138.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_994139.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_994141.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_994142.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_994143.1	binds the polymerase to DNA and acts as a sliding clamp
YP_994144.1	negatively supercoils closed circular double-stranded DNA
YP_994145.1	identified by match to protein family HMM PF01527
YP_994146.1	identified by match to protein family HMM PF00665
YP_994147.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_994149.1	identified by match to protein family HMM PF01839; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_994159.1	identified by match to protein family HMM PF00498
YP_994160.1	identified by match to protein family HMM PF00069
YP_994163.1	identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702
YP_994164.1	identified by match to protein family HMM PF00596
YP_994167.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_994169.1	identified by match to protein family HMM PF01943
YP_994170.1	identified by match to protein family HMM PF00534
YP_994171.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_994174.1	identified by match to protein family HMM PF00534
YP_994175.1	identified by match to protein family HMM PF01569
YP_994177.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_994179.1	identified by match to protein family HMM PF00703
YP_994182.1	identified by match to protein family HMM PF02771; match to protein family HMM PF08028
YP_994183.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_994184.1	identified by match to protein family HMM PF00027
YP_994186.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025
YP_994187.1	identified by match to protein family HMM PF02563
YP_994188.1	identified by match to protein family HMM PF00534
YP_994192.1	identified by match to protein family HMM PF00107
YP_994194.1	identified by match to protein family HMM PF00665
YP_994195.1	identified by match to protein family HMM PF01527
YP_994196.1	identified by match to protein family HMM PF01610
YP_994197.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_994198.1	identified by match to protein family HMM PF01435
YP_994199.1	identified by match to protein family HMM PF07690
YP_994200.1	identified by match to protein family HMM PF07021; match to protein family HMM TIGR02081
YP_994201.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_994202.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_994203.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993
YP_994204.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_994207.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_994208.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954
YP_994209.1	heat shock protein involved in degradation of misfolded proteins
YP_994210.2	heat shock protein involved in degradation of misfolded proteins
YP_994211.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420
YP_994212.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_994214.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_994215.1	identified by match to protein family HMM PF04340
YP_994216.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_994217.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_994218.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_994221.1	identified by match to protein family HMM PF05721
YP_994223.1	identified by match to protein family HMM PF00248
YP_994225.1	identified by match to protein family HMM PF00892
YP_994227.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_994230.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_994232.1	identified by match to protein family HMM PF00171
YP_994233.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_994235.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_994236.1	identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473
YP_994237.1	identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_994238.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_994239.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_994240.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_994241.1	identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205
YP_994242.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_994246.1	identified by match to protein family HMM PF03929
YP_994247.1	identified by match to protein family HMM PF02625
YP_994248.1	identified by match to protein family HMM PF00324
YP_994249.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_994252.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_994253.1	identified by match to protein family HMM PF01810
YP_994254.1	identified by match to protein family HMM PF03372
YP_994257.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_994258.1	identified by match to protein family HMM PF01266
YP_994259.1	identified by match to protein family HMM PF01355
YP_994261.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_994263.1	identified by match to protein family HMM PF00496
YP_994264.1	identified by match to protein family HMM PF00528
YP_994265.1	identified by match to protein family HMM PF00528
YP_994266.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727
YP_994267.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_994268.1	identified by match to protein family HMM PF07446
YP_994269.1	identified by match to protein family HMM PF01609
YP_994270.1	identified by match to protein family HMM PF06166
YP_994271.1	identified by match to protein family HMM PF06149
YP_994273.1	identified by match to protein family HMM PF03746
YP_994274.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_994275.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_994276.1	identified by match to protein family HMM PF01047
YP_994277.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_994278.1	identified by match to protein family HMM PF01464
YP_994279.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_994280.1	identified by match to protein family HMM PF02798
YP_994281.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_994284.1	identified by match to protein family HMM PF05130
YP_994285.1	identified by match to protein family HMM PF04316
YP_994286.1	required for the assembly of the flagellar basal body P-ring
YP_994288.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_994289.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_994290.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_994291.1	the hook connects flagellar basal body to the flagellar filament
YP_994292.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_994293.1	makes up the distal portion of the flagellar basal body rod
YP_994294.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes
YP_994295.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_994296.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_994297.1	identified by match to protein family HMM PF07238; match to protein family HMM PF07317
YP_994298.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_994299.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_994300.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_994301.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994302.1	identified by match to protein family HMM PF02417
YP_994303.1	identified by match to protein family HMM PF02417
YP_994305.1	identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686
YP_994306.1	identified by match to protein family HMM PF06912
YP_994308.1	identified by match to protein family HMM PF00267
YP_994314.1	identified by match to protein family HMM PF00665
YP_994315.1	identified by match to protein family HMM PF01527
YP_994317.1	identified by match to protein family HMM PF04966
YP_994321.1	identified by match to protein family HMM PF01566
YP_994323.1	identified by match to protein family HMM PF01609
YP_994324.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424
YP_994326.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_994329.1	identified by match to protein family HMM PF00403
YP_994332.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_994334.1	identified by match to protein family HMM PF04011
YP_994335.1	identified by match to protein family HMM PF04536
YP_994336.1	identified by match to protein family HMM PF04536
YP_994338.1	identified by match to protein family HMM PF02321
YP_994339.1	identified by match to protein family HMM TIGR01730
YP_994340.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_994343.1	identified by match to protein family HMM PF01382
YP_994344.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_994346.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF01128; match to protein family HMM TIGR01173
YP_994348.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_994349.1	identified by match to protein family HMM TIGR00526
YP_994351.1	identified by match to protein family HMM PF02636
YP_994354.1	identified by match to protein family HMM PF00294
YP_994355.1	identified by match to protein family HMM PF07221
YP_994356.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_994357.1	identified by match to protein family HMM PF00015
YP_994358.1	identified by match to protein family HMM PF01758
YP_994361.1	identified by match to protein family HMM PF01527
YP_994362.1	identified by match to protein family HMM PF00665
YP_994366.1	identified by match to protein family HMM PF00245
YP_994367.1	identified by match to protein family HMM PF00245
YP_994369.1	identified by match to protein family HMM PF03932
YP_994370.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_994371.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_994372.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_994373.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_994377.1	identified by match to protein family HMM PF00106
YP_994378.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_994379.1	identified by match to protein family HMM PF00484
YP_994380.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_994382.1	identified by match to protein family HMM PF00753
YP_994383.1	identified by match to protein family HMM PF00005
YP_994384.1	identified by match to protein family HMM PF00496
YP_994386.1	identified by match to protein family HMM PF01047
YP_994388.1	identified by match to protein family HMM PF00106
YP_994389.1	identified by match to protein family HMM PF00106
YP_994390.1	identified by match to protein family HMM PF01323
YP_994391.1	identified by match to protein family HMM PF05036
YP_994392.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_994395.1	identified by match to protein family HMM PF01609
YP_994396.1	identified by match to protein family HMM PF00665
YP_994397.1	identified by match to protein family HMM PF01527
YP_994398.1	identified by match to protein family HMM PF00657
YP_994399.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA
YP_994400.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_994401.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_994402.1	identified by match to protein family HMM PF01883; match to protein family HMM TIGR02159
YP_994403.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160
YP_994405.1	identified by match to protein family HMM PF00440
YP_994406.1	identified by match to protein family HMM PF00583
YP_994407.1	identified by match to protein family HMM PF01037
YP_994408.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_994410.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_994412.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_994413.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_994414.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_994415.1	identified by match to protein family HMM PF00258
YP_994416.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_994419.1	identified by match to protein family HMM PF03922
YP_994420.1	identified by match to protein family HMM PF00665
YP_994421.1	identified by match to protein family HMM PF01527
YP_994422.1	identified by match to protein family HMM PF01578
YP_994423.1	identified by match to protein family HMM PF05140
YP_994424.1	identified by match to protein family HMM PF00034
YP_994425.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_994426.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_994427.1	identified by match to protein family HMM PF00085; match to protein family HMM PF02683
YP_994428.1	identified by match to protein family HMM PF03091
YP_994429.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_994430.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_994431.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_994432.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_994433.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_994434.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_994435.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_994436.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_994437.1	late assembly protein
YP_994438.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_994439.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_994440.1	binds 5S rRNA along with protein L5 and L25
YP_994441.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_994442.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_994443.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_994444.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_994445.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_994446.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_994447.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_994448.1	one of the stabilizing components for the large ribosomal subunit
YP_994449.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_994450.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_994451.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_994452.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_994453.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_994454.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_994455.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_994456.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_994457.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_994458.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_994459.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_994460.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_994461.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_994462.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_994463.1	identified by match to protein family HMM PF01610
YP_994464.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_994465.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_994466.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_994468.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_994469.1	binds directly to 23S ribosomal RNA
YP_994470.1	Modulates Rho-dependent transcription termination
YP_994471.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_994472.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_994475.1	identified by match to protein family HMM PF01527
YP_994476.1	identified by match to protein family HMM PF00665
YP_994477.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_994478.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_994480.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_994482.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_994483.1	identified by match to protein family HMM PF01609
YP_994484.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_994486.1	identified by match to protein family HMM PF05137
YP_994488.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515
YP_994489.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_994490.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_994491.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_994492.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_994493.1	identified by match to protein family HMM PF00528
YP_994494.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_994495.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_994496.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_994497.1	identified by match to protein family HMM PF03922
YP_994498.1	identified by match to protein family HMM PF07605
YP_994499.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_994500.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_994501.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_994502.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_994504.2	identified by match to protein family HMM PF00005
YP_994507.1	identified by match to protein family HMM PF01266
YP_994508.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_994509.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_994510.1	identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693
YP_994511.1	identified by match to protein family HMM PF00005
YP_994512.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_994513.1	identified by match to protein family HMM PF02470
YP_994514.1	identified by match to protein family HMM PF04333
YP_994515.1	identified by match to protein family HMM PF05494
YP_994517.1	identified by match to protein family HMM PF00005
YP_994518.1	identified by match to protein family HMM PF01061
YP_994519.1	identified by match to protein family HMM PF01722
YP_994520.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_994521.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_994522.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_994523.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_994524.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_994525.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_994526.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_994527.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_994528.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_994529.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_994530.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_994532.1	identified by match to protein family HMM PF01230
YP_994533.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_994534.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410
YP_994535.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_994537.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_994538.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_994539.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416
YP_994540.1	identified by match to protein family HMM PF00033
YP_994541.1	identified by match to protein family HMM PF02167
YP_994542.1	identified by match to protein family HMM PF00462; match to protein family HMM PF02798
YP_994543.1	identified by match to protein family HMM PF04386
YP_994545.1	identified by match to protein family HMM PF01527
YP_994546.1	identified by match to protein family HMM PF00665
YP_994547.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_994548.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400
YP_994549.1	identified by match to protein family HMM PF00376
YP_994553.1	identified by match to protein family HMM PF00005
YP_994554.1	identified by match to protein family HMM PF00528
YP_994555.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_994556.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_994560.1	identified by match to protein family HMM PF01555
YP_994561.1	identified by match to protein family HMM PF04851
YP_994564.1	identified by match to protein family HMM PF00165
YP_994565.1	identified by match to protein family HMM PF00005
YP_994566.1	identified by match to protein family HMM PF00005
YP_994567.1	identified by match to protein family HMM PF02653
YP_994568.1	identified by match to protein family HMM PF02653
YP_994570.1	identified by match to protein family HMM PF00171
YP_994573.1	identified by match to protein family HMM PF00106
YP_994574.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_994575.1	identified by match to protein family HMM PF03551
YP_994578.1	identified by match to protein family HMM PF00665
YP_994579.1	identified by match to protein family HMM PF01527
YP_994580.1	identified by match to protein family HMM PF00589
YP_994581.1	identified by match to protein family HMM PF00034
YP_994582.1	identified by match to protein family HMM PF00580
YP_994584.1	identified by match to protein family HMM PF00657
YP_994585.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_994588.2	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_994589.1	identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_994590.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_994593.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_994595.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_994597.1	identified by match to protein family HMM PF00165
YP_994599.1	identified by match to protein family HMM PF00171
YP_994601.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_994602.1	identified by match to protein family HMM PF06751
YP_994603.1	identified by match to protein family HMM PF01609
YP_994604.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908
YP_994606.1	identified by match to protein family HMM PF01757
YP_994608.1	identified by match to protein family HMM PF05552
YP_994612.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_994613.1	identified by match to protein family HMM PF00376; match to protein family HMM TIGR02047
YP_994614.1	identified by match to protein family HMM PF03551
YP_994617.1	identified by match to protein family HMM PF00497
YP_994618.1	catalyzes the transfer of an amino moiety
YP_994620.1	identified by match to protein family HMM PF00440
YP_994621.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_994622.1	identified by match to protein family HMM PF00501
YP_994623.1	identified by match to protein family HMM PF01094
YP_994624.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_994627.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_994628.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_994629.1	identified by match to protein family HMM PF00497
YP_994632.1	activates fatty acids by binding to coenzyme A
YP_994633.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_994634.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_994635.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_994636.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_994637.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_994638.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_994639.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_994640.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_994642.1	identified by match to protein family HMM PF03600
YP_994643.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_994644.1	identified by match to protein family HMM PF01656
YP_994645.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_994646.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_994647.1	identified by match to protein family HMM PF00005
YP_994648.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_994649.1	identified by match to protein family HMM PF02653
YP_994650.1	identified by match to protein family HMM PF01094
YP_994652.1	identified by match to protein family HMM PF02653
YP_994653.1	identified by match to protein family HMM PF02653
YP_994655.1	identified by match to protein family HMM PF00005
YP_994656.1	identified by match to protein family HMM PF00005
YP_994657.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_994658.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_994659.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994660.1	identified by match to protein family HMM PF01928
YP_994661.1	identified by match to protein family HMM PF01037
YP_994662.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_994663.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_994665.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_994666.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_994668.1	identified by match to protein family HMM PF00856
YP_994669.1	identified by match to protein family HMM PF00724
YP_994670.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_994671.1	identified by match to protein family HMM PF01022; match to protein family HMM PF01047
YP_994673.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_994674.1	identified by match to protein family HMM PF00999
YP_994675.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_994676.1	identified by match to protein family HMM PF00216
YP_994677.1	identified by match to protein family HMM PF01609
YP_994678.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_994679.1	identified by match to protein family HMM PF00753
YP_994681.1	identified by match to protein family HMM PF01037
YP_994682.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_994683.1	identified by match to protein family HMM PF00816
YP_994684.1	identified by match to protein family HMM PF01243
YP_994685.1	identified by match to protein family HMM PF07690
YP_994686.1	identified by match to protein family HMM PF01094
YP_994688.1	identified by match to protein family HMM PF00665
YP_994689.1	identified by match to protein family HMM PF01527
YP_994691.1	identified by match to protein family HMM PF01738
YP_994692.1	identified by match to protein family HMM PF01425
YP_994693.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_994694.1	identified by match to protein family HMM PF04020
YP_994695.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_994697.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_994699.1	positive regulator of class III flagellar genes
YP_994700.1	membrane protein involved in the flagellar export apparatus
YP_994701.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_994702.1	identified by match to protein family HMM PF06983
YP_994705.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_994706.1	identified by match to protein family HMM PF00072
YP_994707.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_994708.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_994709.1	identified by match to protein family HMM PF01739
YP_994710.1	identified by match to protein family HMM PF03705
YP_994711.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_994712.1	identified by match to protein family HMM PF01584
YP_994713.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895
YP_994714.1	identified by match to protein family HMM PF00072
YP_994715.1	identified by match to protein family HMM PF00691
YP_994716.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_994717.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_994718.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_994719.1	identified by match to protein family HMM PF00534
YP_994720.1	identified by match to protein family HMM PF00816
YP_994721.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_994722.1	identified by match to protein family HMM TIGR01484
YP_994723.1	identified by match to protein family HMM PF01869
YP_994724.1	identified by match to protein family HMM PF03352
YP_994725.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_994726.1	structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus
YP_994727.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_994729.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_994730.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_994734.1	identified by match to protein family HMM PF00106
YP_994735.1	identified by match to protein family HMM PF00132
YP_994736.1	identified by match to protein family HMM PF00355
YP_994740.1	identified by match to protein family HMM PF01810
YP_994741.1	identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409
YP_994743.1	identified by match to protein family HMM PF05643
YP_994745.1	identified by match to protein family HMM PF03783
YP_994748.1	identified by match to protein family HMM PF00561
YP_994749.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_994751.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_994752.1	identified by match to protein family HMM PF03067
YP_994754.1	identified by match to protein family HMM PF01527
YP_994755.1	identified by match to protein family HMM PF00665
YP_994757.1	identified by match to protein family HMM PF00487
YP_994758.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_994759.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_994760.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_994761.1	identified by match to protein family HMM PF00108
YP_994762.1	identified by match to protein family HMM PF02803
YP_994763.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_994764.1	identified by match to protein family HMM PF02515
YP_994770.1	identified by match to protein family HMM PF00665
YP_994771.1	identified by match to protein family HMM PF01527
YP_994773.1	identified by match to protein family HMM PF04347
YP_994774.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480
YP_994775.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_994776.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_994777.1	identified by match to protein family HMM PF04172
YP_994778.1	identified by match to protein family HMM PF03788
YP_994780.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_994781.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_994782.1	identified by match to protein family HMM PF01047
YP_994784.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_994786.1	identified by match to protein family HMM PF04612
YP_994787.1	identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709
YP_994788.1	identified by match to protein family HMM PF03934
YP_994790.1	identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532
YP_994791.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532
YP_994792.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532
YP_994794.1	identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120
YP_994795.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533
YP_994796.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
YP_994797.1	identified by match to protein family HMM PF01464
YP_994798.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_994799.1	identified by match to protein family HMM PF01609
YP_994800.1	identified by match to protein family HMM PF01527
YP_994801.1	identified by match to protein family HMM PF00665
YP_994802.1	identified by match to protein family HMM PF01610
YP_994803.1	identified by match to protein family HMM PF03922
YP_994806.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_994807.1	identified by match to protein family HMM PF00258
YP_994808.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_994809.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_994810.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate