-- dump date   	20140619_013833
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001077210.1	identified by match to protein family HMM PF00589
YP_001077212.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001077213.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_001077214.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_001077216.1	identified by match to protein family HMM PF04264
YP_001077218.1	identified by match to protein family HMM PF00440
YP_001077219.1	identified by match to protein family HMM PF07080
YP_001077220.1	identified by match to protein family HMM PF04952
YP_001077221.1	identified by match to protein family HMM PF00180; match to protein family HMM TIGR02089
YP_001077222.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077224.1	identified by match to protein family HMM PF04140
YP_001077225.1	identified by match to protein family HMM PF02798
YP_001077227.1	identified by match to protein family HMM PF01734
YP_001077228.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_001077229.1	converts acetoacetate to acetone and carbon dioxide
YP_001077230.1	identified by match to protein family HMM PF01569
YP_001077233.1	identified by match to protein family HMM PF04954; match to protein family HMM PF08021
YP_001077234.1	identified by match to protein family HMM PF03551
YP_001077236.1	identified by match to protein family HMM PF00067
YP_001077238.1	identified by match to protein family HMM PF01261; match to protein family HMM PF05114
YP_001077240.1	identified by match to protein family HMM PF02310; match to protein family HMM PF04055
YP_001077242.1	identified by match to protein family HMM PF01810
YP_001077243.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_001077244.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001077245.1	identified by match to protein family HMM PF00582
YP_001077249.1	identified by match to protein family HMM PF00171
YP_001077251.1	identified by match to protein family HMM PF00665
YP_001077252.1	identified by match to protein family HMM PF01527
YP_001077253.1	identified by match to protein family HMM PF08450
YP_001077258.1	identified by match to protein family HMM PF00132
YP_001077259.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001077260.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001077261.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077262.1	catalyzes the formation of protocatechuate from 4-hydroxybenzoate
YP_001077263.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001077264.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001077265.1	Catalyzes the cycloisomerization of cis,cis-muconate
YP_001077266.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR02427
YP_001077267.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR02425
YP_001077268.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001077270.1	identified by match to protein family HMM PF01810
YP_001077271.1	identified by match to protein family HMM PF07690
YP_001077280.1	member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001077281.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_001077283.1	identified by match to protein family HMM PF03693
YP_001077290.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001077293.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001077299.1	identified by match to protein family HMM PF00165
YP_001077302.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506
YP_001077305.1	identified by match to protein family HMM PF01527
YP_001077306.1	identified by match to protein family HMM PF00665
YP_001077307.1	identified by match to protein family HMM PF02706
YP_001077317.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001077321.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001077324.1	identified by match to protein family HMM PF00561
YP_001077325.1	identified by match to protein family HMM PF01266
YP_001077326.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001077327.1	identified by match to protein family HMM PF00440
YP_001077328.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077329.1	identified by match to protein family HMM PF00665
YP_001077330.1	identified by match to protein family HMM PF01527
YP_001077331.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001077335.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_001077336.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001077342.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_001077344.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354
YP_001077346.1	identified by match to protein family HMM PF04972
YP_001077347.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_001077350.1	Enables the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation
YP_001077351.1	identified by match to protein family HMM PF01515; match to protein family HMM PF01575
YP_001077352.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167
YP_001077353.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the beta chain is a regulatory subunit
YP_001077354.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001077355.1	identified by match to protein family HMM TIGR02230
YP_001077356.1	identified by match to protein family HMM TIGR03165
YP_001077357.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0
YP_001077358.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001077359.1	identified by match to protein family HMM PF00430
YP_001077360.1	produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a catalytic subunit
YP_001077361.1	identified by match to protein family HMM PF00231
YP_001077363.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001077367.1	identified by match to protein family HMM PF00015; match to protein family HMM PF08269
YP_001077369.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001077370.1	identified by match to protein family HMM PF01061
YP_001077371.1	identified by match to protein family HMM PF00005; match to protein family HMM PF01061
YP_001077374.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001077375.1	identified by match to protein family HMM PF00440
YP_001077376.1	identified by match to protein family HMM PF00582
YP_001077378.1	identified by match to protein family HMM PF02687
YP_001077379.1	identified by match to protein family HMM PF00005
YP_001077380.1	identified by match to protein family HMM PF00529
YP_001077382.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001077383.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_001077386.1	identified by match to protein family HMM PF04972
YP_001077389.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001077395.1	identified by match to protein family HMM PF08240; match to protein family HMM TIGR02822
YP_001077396.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_001077399.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01829
YP_001077401.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_001077403.1	identified by match to protein family HMM PF01609
YP_001077405.1	identified by match to protein family HMM PF00324
YP_001077406.1	identified by match to protein family HMM PF00665
YP_001077407.1	identified by match to protein family HMM PF01527
YP_001077409.1	identified by match to protein family HMM PF02012
YP_001077413.1	identified by match to protein family HMM PF00857
YP_001077414.1	identified by match to protein family HMM PF01047
YP_001077417.1	catalyzes the degradation of 2-hydro-1,2-dihydroxy benzoate to catechol
YP_001077418.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM PF08021
YP_001077419.1	identified by match to protein family HMM PF00866
YP_001077420.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_001077421.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077422.1	identified by match to protein family HMM PF01370
YP_001077425.1	identified by match to protein family HMM PF00165
YP_001077427.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_001077430.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_001077431.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02843
YP_001077432.2	identified by match to protein family HMM PF00510; match to protein family HMM TIGR02842
YP_001077433.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_001077434.1	identified by match to protein family HMM PF02426
YP_001077435.1	identified by match to protein family HMM PF00775; match to protein family HMM PF04444; match to protein family HMM TIGR02439
YP_001077436.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR02534
YP_001077437.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077438.1	identified by match to protein family HMM PF00165
YP_001077439.1	identified by match to protein family HMM PF00355; match to protein family HMM PF00848
YP_001077440.1	identified by match to protein family HMM PF00866
YP_001077441.1	identified by match to protein family HMM PF00355
YP_001077442.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001077443.1	identified by match to protein family HMM PF01230
YP_001077444.1	identified by match to protein family HMM PF00614
YP_001077449.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831
YP_001077451.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_001077452.1	identified by match to protein family HMM PF00171
YP_001077457.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001077459.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001077460.1	identified by match to protein family HMM PF01584
YP_001077461.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01739; match to protein family HMM PF07719
YP_001077462.1	identified by match to protein family HMM PF01584
YP_001077463.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518
YP_001077464.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_001077465.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_001077466.1	identified by match to protein family HMM PF00654
YP_001077467.1	identified by match to protein family HMM PF02517
YP_001077470.1	identified by match to protein family HMM PF05433
YP_001077472.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001077473.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001077474.1	identified by match to protein family HMM PF01965
YP_001077475.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001077476.1	identified by match to protein family HMM PF04261; match to protein family HMM TIGR01413
YP_001077481.1	identified by match to protein family HMM PF02566
YP_001077483.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001077484.1	identified by match to protein family HMM PF01636
YP_001077485.1	identified by match to protein family HMM PF00300
YP_001077486.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001077488.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001077489.1	identified by match to protein family HMM PF00107
YP_001077491.1	identified by match to protein family HMM PF07690
YP_001077492.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR03304
YP_001077494.1	identified by match to protein family HMM PF01594
YP_001077496.1	identified by match to protein family HMM PF05957
YP_001077497.1	identified by match to protein family HMM PF03372
YP_001077498.1	identified by match to protein family HMM PF04946
YP_001077499.1	identified by match to protein family HMM PF04946
YP_001077500.1	identified by match to protein family HMM PF00271
YP_001077501.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001077504.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001077505.1	identified by match to protein family HMM PF02915
YP_001077512.1	identified by match to protein family HMM TIGR03025
YP_001077513.1	identified by match to protein family HMM PF01527
YP_001077514.1	identified by match to protein family HMM PF00665
YP_001077517.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001077520.1	identified by match to protein family HMM PF01070
YP_001077521.1	identified by match to protein family HMM PF04073
YP_001077523.1	identified by match to protein family HMM PF02922
YP_001077524.1	identified by match to protein family HMM PF02581
YP_001077525.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001077526.1	identified by match to protein family HMM PF00512
YP_001077527.1	identified by match to protein family HMM PF00892
YP_001077528.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077529.1	identified by match to protein family HMM PF01361
YP_001077530.1	identified by match to protein family HMM PF05235
YP_001077531.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03459; match to protein family HMM TIGR00637; match to protein family HMM TIGR00638
YP_001077533.1	identified by match to protein family HMM PF00005
YP_001077534.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_001077535.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256
YP_001077536.1	identified by match to protein family HMM PF01569
YP_001077537.1	identified by match to protein family HMM TIGR01840
YP_001077539.1	identified by match to protein family HMM PF02566
YP_001077540.1	identified by match to protein family HMM PF01047
YP_001077543.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_001077546.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_001077547.1	identified by match to protein family HMM PF00589
YP_001077549.1	identified by match to protein family HMM PF00665
YP_001077550.1	identified by match to protein family HMM PF01527
YP_001077554.1	identified by match to protein family HMM PF04463
YP_001077556.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001077557.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001077558.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001077562.1	identified by match to protein family HMM PF01738; match to protein family HMM TIGR01409
YP_001077563.1	identified by match to protein family HMM PF00581
YP_001077564.1	identified by match to protein family HMM PF01609
YP_001077565.1	identified by match to protein family HMM PF00355
YP_001077566.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_001077567.1	identified by match to protein family HMM PF00348
YP_001077568.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001077569.1	similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis
YP_001077571.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001077572.1	identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_001077573.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001077574.1	identified by match to protein family HMM PF02637
YP_001077576.1	synthesizes RNA primers at the replication forks
YP_001077577.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_001077579.1	identified by match to protein family HMM PF00665
YP_001077581.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077583.1	identified by match to protein family HMM PF05036
YP_001077585.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_001077587.1	identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883
YP_001077588.1	identified by match to protein family HMM PF00496
YP_001077589.1	identified by match to protein family HMM PF00528
YP_001077590.1	identified by match to protein family HMM PF00528
YP_001077591.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001077592.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001077593.1	identified by match to protein family HMM PF03573
YP_001077598.1	identified by match to protein family HMM PF03600
YP_001077600.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448
YP_001077604.1	identified by match to protein family HMM PF00816
YP_001077607.1	identified by match to protein family HMM PF00583; match to protein family HMM PF02629
YP_001077612.3	catalyzes the formation of indole-3-acetic acid from indole-3-acetamide
YP_001077614.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001077617.1	identified by match to protein family HMM PF01557
YP_001077618.1	identified by match to protein family HMM PF01070
YP_001077619.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077620.1	identified by match to protein family HMM PF01527
YP_001077622.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001077625.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001077626.1	identified by match to protein family HMM PF07690
YP_001077627.1	identified by match to protein family HMM PF00753
YP_001077628.2	identified by match to protein family HMM PF00581; match to protein family HMM PF01022
YP_001077632.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077635.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077637.1	identified by match to protein family HMM PF00106
YP_001077641.1	identified by match to protein family HMM PF01494
YP_001077644.1	identified by match to protein family HMM PF00498
YP_001077648.1	identified by match to protein family HMM PF05936
YP_001077649.1	identified by match to protein family HMM PF00691
YP_001077650.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001077653.1	identified by match to protein family HMM PF00069
YP_001077654.1	identified by match to protein family HMM PF06812
YP_001077655.1	identified by match to protein family HMM PF05591
YP_001077656.1	identified by match to protein family HMM PF05943
YP_001077657.1	identified by match to protein family HMM PF05638
YP_001077658.1	identified by match to protein family HMM PF04965
YP_001077659.1	identified by match to protein family HMM PF05947
YP_001077660.1	identified by match to protein family HMM PF06996
YP_001077661.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001077662.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_001077664.2	identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_001077665.1	identified by match to protein family HMM PF00665
YP_001077666.1	identified by match to protein family HMM PF01527
YP_001077667.1	identified by match to protein family HMM PF02133
YP_001077668.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_001077669.1	identified by match to protein family HMM PF06080
YP_001077671.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_001077673.1	identified by match to protein family HMM PF07883
YP_001077674.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001077676.1	identified by match to protein family HMM PF01292
YP_001077679.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01778
YP_001077681.1	acts as a molecular chaperone to fold and export lipase A
YP_001077682.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001077683.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001077684.1	identified by match to protein family HMM PF01547
YP_001077686.1	identified by match to protein family HMM PF00528
YP_001077689.1	identified by match to protein family HMM PF00665
YP_001077690.1	identified by match to protein family HMM PF01527
YP_001077692.1	identified by match to protein family HMM PF03865; match to protein family HMM PF08479
YP_001077693.1	identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901
YP_001077694.1	catalyzes the conversion of citrate to isocitrate
YP_001077695.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_001077697.1	identified by match to protein family HMM PF03328
YP_001077698.1	catalyzes the oxidation of malate to oxaloacetate
YP_001077699.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001077700.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970
YP_001077701.1	identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968
YP_001077702.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_001077703.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001077704.1	identified by match to protein family HMM PF03937
YP_001077705.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_001077706.1	identified by match to protein family HMM PF00165
YP_001077708.1	identified by match to protein family HMM PF00665
YP_001077709.1	identified by match to protein family HMM PF01527
YP_001077711.1	identified by match to protein family HMM PF00665
YP_001077712.1	identified by match to protein family HMM PF07350
YP_001077713.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_001077714.1	identified by match to protein family HMM PF01037
YP_001077721.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_001077722.1	identified by match to protein family HMM PF08085
YP_001077723.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_001077724.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001077726.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001077728.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001077729.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_001077730.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001077731.1	identified by match to protein family HMM PF01555
YP_001077732.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001077733.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_001077734.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_001077735.1	identified by match to protein family HMM PF05036
YP_001077736.1	identified by match to protein family HMM PF02674
YP_001077737.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001077738.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_001077741.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01472
YP_001077742.1	identified by match to protein family HMM PF01757
YP_001077746.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943
YP_001077747.1	identified by match to protein family HMM PF00534
YP_001077750.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001077751.1	identified by match to protein family HMM PF01757
YP_001077752.1	identified by match to protein family HMM PF00216
YP_001077755.1	identified by match to protein family HMM PF00267
YP_001077758.1	identified by match to protein family HMM PF04952
YP_001077760.1	identified by match to protein family HMM PF00583
YP_001077761.1	identified by match to protein family HMM PF00497
YP_001077763.1	identified by match to protein family HMM PF00296
YP_001077766.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001077767.1	identified by match to protein family HMM TIGR01409
YP_001077768.1	identified by match to protein family HMM PF02698
YP_001077773.1	identified by match to protein family HMM PF00037; match to protein family HMM PF09163; match to protein family HMM TIGR01582
YP_001077774.1	identified by match to protein family HMM TIGR01583
YP_001077775.1	identified by match to protein family HMM PF04216; match to protein family HMM TIGR01562
YP_001077776.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001077777.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF09106; match to protein family HMM PF09107; match to protein family HMM TIGR00475
YP_001077787.1	identified by match to protein family HMM PF07690
YP_001077789.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001077794.1	identified by match to protein family HMM PF01734
YP_001077797.1	identified by match to protein family HMM PF00652; match to protein family HMM PF09118
YP_001077800.1	identified by match to protein family HMM PF00072
YP_001077801.1	identified by match to protein family HMM PF08495
YP_001077802.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001077804.1	identified by match to protein family HMM PF07690
YP_001077805.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077808.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077809.1	identified by match to protein family HMM PF03328
YP_001077810.1	identified by match to protein family HMM PF01575
YP_001077811.1	identified by match to protein family HMM PF02550
YP_001077812.1	catalyzes the formation of acetate from pyruvate
YP_001077817.1	identified by match to protein family HMM PF00202; match to protein family HMM PF07690; match to protein family HMM TIGR00709
YP_001077819.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001077820.1	identified by match to protein family HMM PF01527
YP_001077821.1	identified by match to protein family HMM PF00665
YP_001077823.1	identified by match to protein family HMM PF02668
YP_001077826.1	identified by match to protein family HMM PF01311; match to protein family HMM PF01391; match to protein family HMM TIGR01401
YP_001077827.1	identified by match to protein family HMM TIGR02559
YP_001077828.1	identified by match to protein family HMM PF00006; match to protein family HMM PF02874; match to protein family HMM TIGR01026; match to protein family HMM TIGR02546
YP_001077829.1	identified by match to protein family HMM TIGR02499
YP_001077830.1	identified by match to protein family HMM TIGR02560
YP_001077833.1	identified by match to protein family HMM TIGR02558
YP_001077834.1	identified by match to protein family HMM TIGR02561
YP_001077835.1	identified by match to protein family HMM PF01312; match to protein family HMM TIGR01404
YP_001077836.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_001077837.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_001077838.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_001077839.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_001077846.1	identified by match to protein family HMM PF00165
YP_001077854.1	identified by match to protein family HMM PF02518
YP_001077855.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001077857.1	identified by match to protein family HMM PF00437
YP_001077859.1	identified by match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520
YP_001077861.1	identified by match to protein family HMM TIGR03021
YP_001077862.1	identified by match to protein family HMM PF00437
YP_001077863.1	identified by match to protein family HMM PF00482
YP_001077864.1	identified by match to protein family HMM PF08805
YP_001077866.1	identified by match to protein family HMM TIGR02532
YP_001077867.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_001077875.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_001077876.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077881.1	identified by match to protein family HMM PF07804; match to protein family HMM PF07805; match to protein family HMM TIGR03071
YP_001077882.1	identified by match to protein family HMM PF01381
YP_001077886.1	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_001077887.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_001077888.1	identified by match to protein family HMM PF00515; match to protein family HMM PF05420; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001077892.1	identified by match to protein family HMM PF00535; match to protein family HMM PF07238; match to protein family HMM TIGR03030
YP_001077897.1	identified by match to protein family HMM PF00005
YP_001077898.1	identified by match to protein family HMM PF00528
YP_001077900.1	identified by match to protein family HMM PF00724
YP_001077901.1	identified by match to protein family HMM PF00765
YP_001077903.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967
YP_001077906.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098
YP_001077910.1	identified by match to protein family HMM PF01384
YP_001077912.1	identified by match to protein family HMM PF01037
YP_001077913.1	identified by match to protein family HMM PF01810
YP_001077914.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001077917.1	identified by match to protein family HMM PF00450
YP_001077918.1	identified by match to protein family HMM PF01070
YP_001077919.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077920.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001077922.1	identified by match to protein family HMM PF00903
YP_001077923.1	identified by match to protein family HMM PF01047
YP_001077925.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504
YP_001077928.1	identified by match to protein family HMM PF00486
YP_001077932.1	identified by match to protein family HMM TIGR02499
YP_001077933.1	identified by match to protein family HMM TIGR02555
YP_001077934.1	identified by match to protein family HMM PF01514; match to protein family HMM TIGR02544
YP_001077936.1	identified by match to protein family HMM TIGR02105
YP_001077937.1	identified by match to protein family HMM TIGR02554
YP_001077940.1	identified by match to protein family HMM PF00165
YP_001077941.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02516
YP_001077942.1	identified by match to protein family HMM PF02523; match to protein family HMM TIGR02511; match to protein family HMM TIGR02568
YP_001077943.1	identified by match to protein family HMM PF00771; match to protein family HMM TIGR01399
YP_001077945.1	Invasion protein InvC; necessary for efficient entry of S.typhimurium into cultured epithelial cells. Probable catalytic subunit of a protein translocase
YP_001077948.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02551
YP_001077949.1	part of a type III secretory system probably involved in invasion into eukaryotic cells
YP_001077950.1	identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403
YP_001077951.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01401
YP_001077952.1	Required for surface presentation of invasion plasmid antigens; required for invasion and for secretion of the three ipa proteins
YP_001077953.1	identified by match to protein family HMM PF07720; match to protein family HMM TIGR02552
YP_001077954.1	identified by match to protein family HMM PF03518
YP_001077955.1	identified by match to protein family HMM TIGR02101
YP_001077956.1	identified by match to protein family HMM PF00816
YP_001077957.1	identified by match to protein family HMM TIGR02553
YP_001077961.1	identified by match to protein family HMM PF01464
YP_001077962.1	identified by match to protein family HMM PF07487
YP_001077964.1	identified by match to protein family HMM PF09119
YP_001077966.1	identified by match to protein family HMM PF05932
YP_001077967.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001077971.1	identified by match to protein family HMM PF00165
YP_001077977.1	identified by match to protein family HMM PF00665
YP_001077978.1	identified by match to protein family HMM PF01527
YP_001077980.1	identified by match to protein family HMM PF08982
YP_001077981.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001077982.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077983.1	identified by match to protein family HMM PF01609
YP_001077984.1	identified by match to protein family HMM PF01527
YP_001077985.1	identified by match to protein family HMM PF00665
YP_001077986.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001077989.2	identified by match to protein family HMM PF04952
YP_001077991.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_001077992.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001077993.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001077994.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001077995.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08362
YP_001077996.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339; match to protein family HMM TIGR02431
YP_001077997.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001078000.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF08447
YP_001078001.2	identified by match to protein family HMM PF00891
YP_001078004.1	identified by match to protein family HMM PF00355
YP_001078008.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_001078009.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00700
YP_001078010.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001078011.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606
YP_001078012.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001078013.1	identified by match to protein family HMM PF05013
YP_001078017.1	identified by match to protein family HMM PF00892
YP_001078018.1	catalyzes the formation of selenophosphate from selenide and ATP
YP_001078021.1	identified by match to protein family HMM PF06516
YP_001078024.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078025.1	identified by match to protein family HMM PF07859
YP_001078026.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001078027.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_001078028.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001078031.1	identified by match to protein family HMM PF00375
YP_001078032.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001078033.2	identified by match to protein family HMM PF00583
YP_001078035.1	identified by match to protein family HMM PF03547
YP_001078037.1	identified by match to protein family HMM PF00501
YP_001078038.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001078040.1	identified by match to protein family HMM PF00501
YP_001078041.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_001078043.1	identified by match to protein family HMM PF07991
YP_001078045.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_001078046.1	identified by match to protein family HMM PF00202
YP_001078053.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967
YP_001078055.1	identified by match to protein family HMM PF03180
YP_001078057.1	identified by match to protein family HMM PF00005
YP_001078058.1	identified by match to protein family HMM PF00528
YP_001078061.1	identified by match to protein family HMM PF00441; match to protein family HMM PF08028
YP_001078066.1	identified by match to protein family HMM PF02754
YP_001078067.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02589; match to protein family HMM TIGR00273
YP_001078068.1	identified by match to protein family HMM PF02589
YP_001078069.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_001078071.1	identified by match to protein family HMM PF07681
YP_001078074.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078075.1	identified by match to protein family HMM PF02615
YP_001078076.1	identified by match to protein family HMM PF00171
YP_001078077.1	identified by match to protein family HMM PF00324
YP_001078078.1	identified by match to protein family HMM PF00701
YP_001078080.1	identified by match to protein family HMM PF05544
YP_001078081.1	identified by match to protein family HMM PF01266
YP_001078082.1	identified by match to protein family HMM PF00111
YP_001078083.1	identified by match to protein family HMM PF01266; match to protein family HMM PF04324; match to protein family HMM PF07992
YP_001078084.1	identified by match to protein family HMM PF00165; match to protein family HMM PF08448
YP_001078087.1	identified by match to protein family HMM PF00665
YP_001078088.1	identified by match to protein family HMM PF01527
YP_001078089.1	identified by match to protein family HMM PF00903; match to protein family HMM PF01261
YP_001078090.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001078091.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001078092.1	identified by match to protein family HMM PF07690
YP_001078093.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_001078094.1	identified by match to protein family HMM PF01547
YP_001078095.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001078096.1	identified by match to protein family HMM PF00528
YP_001078097.1	identified by match to protein family HMM PF00528
YP_001078098.1	identified by match to protein family HMM PF01663; match to protein family HMM TIGR02335
YP_001078099.1	identified by match to protein family HMM PF00171
YP_001078101.1	identified by match to protein family HMM PF00665
YP_001078102.1	identified by match to protein family HMM PF01527
YP_001078103.1	identified by match to protein family HMM PF03928
YP_001078105.1	identified by match to protein family HMM PF03239
YP_001078108.2	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001078109.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001078110.1	identified by match to protein family HMM PF01609
YP_001078111.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_001078112.1	identified by match to protein family HMM PF00248
YP_001078113.1	identified by match to protein family HMM PF04378
YP_001078115.1	identified by match to protein family HMM PF01527
YP_001078116.1	identified by match to protein family HMM PF00665
YP_001078118.1	identified by match to protein family HMM PF00665
YP_001078119.1	identified by match to protein family HMM PF01527
YP_001078124.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_001078126.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078130.1	identified by match to protein family HMM PF00248
YP_001078132.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001078134.1	identified by match to protein family HMM PF00196
YP_001078135.1	identified by match to protein family HMM PF00171
YP_001078136.1	identified by match to protein family HMM PF00202
YP_001078137.1	identified by match to protein family HMM PF00324
YP_001078139.1	identified by match to protein family HMM PF00165
YP_001078140.1	identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304
YP_001078141.1	identified by match to protein family HMM PF01810
YP_001078142.1	identified by match to protein family HMM PF00583
YP_001078143.1	identified by match to protein family HMM PF00724
YP_001078146.1	identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304
YP_001078147.1	identified by match to protein family HMM PF01272
YP_001078149.1	identified by match to protein family HMM PF00571
YP_001078150.1	identified by match to protein family HMM PF00925; match to protein family HMM TIGR00505
YP_001078152.1	identified by match to protein family HMM PF00765
YP_001078154.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472
YP_001078155.1	identified by match to protein family HMM PF02308
YP_001078157.1	identified by match to protein family HMM PF00149
YP_001078158.1	identified by match to protein family HMM PF00881
YP_001078159.1	identified by match to protein family HMM PF03171
YP_001078160.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001078161.1	identified by match to protein family HMM PF00267
YP_001078162.1	identified by match to protein family HMM PF00355
YP_001078164.1	identified by match to protein family HMM PF00355
YP_001078165.1	member of a large family of NAD or NADP-dependent oxidoreductases; paralogs occur in many bacteria
YP_001078166.1	identified by match to protein family HMM PF07883
YP_001078167.1	identified by match to protein family HMM PF00561
YP_001078168.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001078169.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078170.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_001078171.1	catalyzes the formation of L-aspartate to iminoaspartate in NAD(+) biosynthesis
YP_001078172.1	identified by match to protein family HMM PF00171
YP_001078173.1	identified by match to protein family HMM PF00903
YP_001078174.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_001078175.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078177.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304
YP_001078178.1	identified by match to protein family HMM PF00691; match to protein family HMM PF04355
YP_001078179.1	identified by match to protein family HMM PF00582
YP_001078181.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001078183.1	identified by match to protein family HMM PF01037
YP_001078184.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_001078190.1	identified by match to protein family HMM PF00797
YP_001078192.1	identified by match to protein family HMM PF02082
YP_001078194.1	identified by match to protein family HMM PF00665
YP_001078195.1	identified by match to protein family HMM PF01527
YP_001078196.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078198.1	identified by match to protein family HMM PF00561
YP_001078200.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078202.1	identified by match to protein family HMM PF07947
YP_001078204.1	identified by match to protein family HMM TIGR01728
YP_001078205.1	identified by match to protein family HMM PF00376
YP_001078206.1	identified by match to protein family HMM PF00583
YP_001078208.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001078214.1	identified by match to protein family HMM PF08667
YP_001078215.1	identified by match to protein family HMM PF01266; match to protein family HMM PF07992
YP_001078217.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_001078218.1	identified by match to protein family HMM PF00561
YP_001078221.1	identified by match to protein family HMM PF02627
YP_001078222.1	catalyzes the formation of L-proline from L-ornithine
YP_001078223.1	identified by match to protein family HMM PF00756
YP_001078226.1	identified by match to protein family HMM PF00267
YP_001078229.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078231.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001078232.1	identified by match to protein family HMM PF00144
YP_001078235.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078238.2	identified by match to protein family HMM PF00005
YP_001078239.1	identified by match to protein family HMM PF00005
YP_001078240.1	identified by match to protein family HMM PF00528
YP_001078241.1	identified by match to protein family HMM PF00528
YP_001078242.1	identified by match to protein family HMM PF00496
YP_001078243.1	catalyzes the hydrolysis of D-alanyl-D-alanine dipeptide: Zn dependent; involved in peptidoglycan synthesis
YP_001078249.1	identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646
YP_001078251.1	identified by match to protein family HMM PF05488; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_001078255.1	identified by match to protein family HMM PF00082; match to protein family HMM PF03797; match to protein family HMM TIGR01414; match to protein family HMM TIGR02601
YP_001078258.1	identified by match to protein family HMM PF00496
YP_001078259.1	identified by match to protein family HMM PF00190; match to protein family HMM PF07883
YP_001078260.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_001078262.1	identified by match to protein family HMM PF05249
YP_001078263.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701
YP_001078265.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001078268.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524
YP_001078270.1	identified by match to protein family HMM PF00082
YP_001078274.1	identified by match to protein family HMM TIGR01409
YP_001078275.1	identified by match to protein family HMM PF00732; match to protein family HMM PF01266
YP_001078276.1	identified by match to protein family HMM PF00034
YP_001078277.1	identified by match to protein family HMM PF07681
YP_001078278.1	identified by match to protein family HMM PF00267
YP_001078281.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001078282.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001078283.1	identified by match to protein family HMM PF00005
YP_001078284.1	identified by match to protein family HMM PF00275
YP_001078286.1	identified by match to protein family HMM PF04828
YP_001078295.1	identified by match to protein family HMM PF02518; match to protein family HMM PF06580
YP_001078296.1	identified by match to protein family HMM PF00665
YP_001078297.1	identified by match to protein family HMM PF01527
YP_001078302.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001078303.1	identified by match to protein family HMM PF00165
YP_001078304.1	identified by match to protein family HMM PF00355
YP_001078305.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001078306.1	involved in polyketide production
YP_001078307.1	Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics
YP_001078308.1	involved in polyketide production
YP_001078309.1	involved in polyketide synthesis
YP_001078310.1	identified by match to protein family HMM PF01610
YP_001078314.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001078315.1	identified by match to protein family HMM PF00999
YP_001078319.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF01212; match to protein family HMM PF02801; match to protein family HMM PF08659
YP_001078323.1	identified by match to protein family HMM PF01266
YP_001078324.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001078326.1	identified by match to protein family HMM PF00571; match to protein family HMM PF00654
YP_001078327.1	identified by match to protein family HMM PF01047
YP_001078328.1	identified by match to protein family HMM PF00571; match to protein family HMM PF04982
YP_001078330.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078332.1	identified by match to protein family HMM PF01699
YP_001078334.2	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001078336.1	identified by match to protein family HMM PF02517
YP_001078337.1	identified by match to protein family HMM PF01557
YP_001078339.1	identified by match to protein family HMM PF00165
YP_001078342.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001078344.1	identified by match to protein family HMM PF04264
YP_001078345.1	identified by match to protein family HMM PF03640
YP_001078347.1	identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_001078350.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001078351.1	identified by match to protein family HMM PF02653
YP_001078352.1	identified by match to protein family HMM PF00005
YP_001078356.1	identified by match to protein family HMM PF04140
YP_001078358.1	identified by match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001078362.1	identified by match to protein family HMM PF00665
YP_001078363.1	identified by match to protein family HMM PF01527
YP_001078365.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386
YP_001078366.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387
YP_001078367.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_001078368.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001078369.1	identified by match to protein family HMM PF02321
YP_001078374.1	identified by match to protein family HMM PF04008
YP_001078375.1	identified by match to protein family HMM PF04073
YP_001078376.1	identified by match to protein family HMM PF00324
YP_001078378.1	identified by match to protein family HMM PF01694
YP_001078380.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001078387.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001078388.1	identified by match to protein family HMM PF00873
YP_001078389.2	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001078391.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_001078392.1	identified by match to protein family HMM PF00400
YP_001078393.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001078394.1	identified by match to protein family HMM PF00589
YP_001078397.1	identified by match to protein family HMM PF05344
YP_001078398.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001078400.1	identified by match to protein family HMM PF00532
YP_001078401.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_001078402.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02254
YP_001078409.1	identified by match to protein family HMM PF06983
YP_001078410.1	identified by match to protein family HMM PF01544
YP_001078414.2	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_001078415.1	identified by match to protein family HMM PF07690
YP_001078418.1	identified by match to protein family HMM PF01547
YP_001078419.1	identified by match to protein family HMM PF00528
YP_001078420.1	identified by match to protein family HMM PF00528
YP_001078421.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001078422.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_001078423.1	identified by match to protein family HMM PF00165
YP_001078424.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_001078428.1	identified by match to protein family HMM PF00144; match to protein family HMM PF00768
YP_001078430.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001078433.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00384; match to protein family HMM PF00667; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001078434.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_001078435.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_001078436.1	identified by match to protein family HMM PF07690
YP_001078440.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469
YP_001078441.1	identified by match to protein family HMM PF00072; match to protein family HMM PF03861
YP_001078444.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001078451.1	identified by match to protein family HMM PF00850
YP_001078452.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001078453.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078456.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078457.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078459.1	identified by match to protein family HMM PF02515
YP_001078461.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001078462.1	identified by match to protein family HMM PF00465
YP_001078470.1	identified by match to protein family HMM PF05650
YP_001078471.1	identified by match to protein family HMM PF00691
YP_001078473.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001078475.1	identified by match to protein family HMM PF03621
YP_001078476.1	identified by match to protein family HMM PF07690
YP_001078478.1	identified by match to protein family HMM PF01609
YP_001078480.1	identified by match to protein family HMM PF00665
YP_001078481.1	identified by match to protein family HMM PF01527
YP_001078485.1	identified by match to protein family HMM PF00550
YP_001078486.1	identified by match to protein family HMM PF00441
YP_001078487.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001078488.1	identified by match to protein family HMM PF00501
YP_001078490.1	identified by match to protein family HMM PF04545; match to protein family HMM PF08281
YP_001078493.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186
YP_001078494.1	identified by match to protein family HMM PF00892
YP_001078496.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_001078497.1	identified by match to protein family HMM PF00440
YP_001078498.1	identified by match to protein family HMM PF00665
YP_001078499.1	identified by match to protein family HMM PF01527
YP_001078503.1	identified by match to protein family HMM PF03976
YP_001078504.1	identified by match to protein family HMM PF03922
YP_001078507.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_001078512.1	identified by match to protein family HMM PF02321
YP_001078513.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_001078517.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF08494
YP_001078519.1	identified by match to protein family HMM PF00665
YP_001078520.1	identified by match to protein family HMM PF01527
YP_001078522.1	identified by match to protein family HMM PF00324
YP_001078524.1	identified by match to protein family HMM PF04946
YP_001078526.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_001078528.1	identified by match to protein family HMM PF01596
YP_001078531.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001078535.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR02424
YP_001078536.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02422
YP_001078537.1	identified by match to protein family HMM PF00775; match to protein family HMM TIGR02423
YP_001078539.1	identified by match to protein family HMM PF04951
YP_001078540.1	identified by match to protein family HMM PF03576
YP_001078541.1	identified by match to protein family HMM PF00528
YP_001078542.1	identified by match to protein family HMM PF00528
YP_001078544.1	identified by match to protein family HMM PF00496
YP_001078546.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_001078547.1	identified by match to protein family HMM PF01112
YP_001078548.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001078549.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_001078550.1	identified by match to protein family HMM PF00144
YP_001078553.1	identified by match to protein family HMM PF04185
YP_001078558.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001078559.1	identified by match to protein family HMM PF00892
YP_001078560.1	identified by match to protein family HMM PF07973
YP_001078562.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001078563.1	identified by match to protein family HMM PF07045
YP_001078565.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001078568.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001078570.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_001078571.1	identified by match to protein family HMM PF01037
YP_001078574.1	identified by match to protein family HMM PF07690
YP_001078575.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001078576.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078577.1	identified by match to protein family HMM PF04909
YP_001078578.1	identified by match to protein family HMM PF00149
YP_001078579.1	identified by match to protein family HMM PF03150
YP_001078581.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_001078586.1	identified by match to protein family HMM PF00583
YP_001078587.1	identified by match to protein family HMM PF04143
YP_001078588.1	identified by match to protein family HMM PF04143
YP_001078589.1	identified by match to protein family HMM PF01022
YP_001078591.1	identified by match to protein family HMM PF01292
YP_001078592.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_001078595.1	identified by match to protein family HMM PF01381
YP_001078596.1	identified by match to protein family HMM PF00132
YP_001078597.1	identified by match to protein family HMM PF00581
YP_001078599.1	identified by match to protein family HMM PF00326; match to protein family HMM PF02897
YP_001078601.1	identified by match to protein family HMM PF00529
YP_001078604.1	identified by match to protein family HMM TIGR01556
YP_001078605.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001078609.1	identified by match to protein family HMM PF00665
YP_001078610.1	identified by match to protein family HMM PF01527
YP_001078611.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_001078612.1	catalyzes the formation of betaine from betaine aldehyde
YP_001078613.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_001078615.1	identified by match to protein family HMM PF05853
YP_001078616.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078617.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08447; match to protein family HMM TIGR00229
YP_001078618.1	identified by match to protein family HMM PF00072
YP_001078619.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF05227; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001078620.1	identified by match to protein family HMM PF02566
YP_001078621.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001078627.1	identified by match to protein family HMM PF00313
YP_001078632.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00526
YP_001078634.1	identified by match to protein family HMM PF01527
YP_001078635.1	identified by match to protein family HMM PF00665
YP_001078637.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_001078638.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_001078639.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078643.1	identified by match to protein family HMM PF07883
YP_001078652.1	identified by match to protein family HMM PF00535; match to protein family HMM PF07238
YP_001078658.1	activates fatty acids by binding to coenzyme A
YP_001078659.1	identified by match to protein family HMM PF00027
YP_001078664.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001078666.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078668.1	identified by match to protein family HMM PF01594
YP_001078670.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001078673.1	identified by match to protein family HMM PF00724
YP_001078675.1	identified by match to protein family HMM PF01965
YP_001078677.1	identified by match to protein family HMM PF00440
YP_001078680.1	identified by match to protein family HMM PF05231
YP_001078681.1	identified by match to protein family HMM PF01527
YP_001078682.1	identified by match to protein family HMM PF00665
YP_001078683.2	identified by match to protein family HMM PF03473
YP_001078684.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001078685.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078686.1	identified by match to protein family HMM PF01547
YP_001078688.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001078689.1	identified by match to protein family HMM PF00267
YP_001078690.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001078692.1	identified by match to protein family HMM PF01689; match to protein family HMM TIGR02312
YP_001078693.1	identified by match to protein family HMM PF02962
YP_001078694.1	identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298
YP_001078695.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02299
YP_001078696.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303
YP_001078697.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02305
YP_001078698.1	identified by match to protein family HMM PF01047; match to protein family HMM TIGR02337
YP_001078699.1	identified by match to protein family HMM PF01370; match to protein family HMM PF07993
YP_001078700.1	identified by match to protein family HMM PF06629
YP_001078701.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078702.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001078706.1	identified by match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001078707.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001078713.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_001078714.1	identified by match to protein family HMM PF00111; match to protein family HMM PF01799
YP_001078715.1	identified by match to protein family HMM PF02738; match to protein family HMM TIGR01409
YP_001078718.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001078722.1	identified by match to protein family HMM PF00196
YP_001078724.1	identified by match to protein family HMM PF00510
YP_001078726.4	identified by match to protein family HMM PF01204
YP_001078728.1	identified by match to protein family HMM PF07690
YP_001078731.1	identified by match to protein family HMM PF06224
YP_001078734.1	identified by match to protein family HMM PF00665
YP_001078735.1	identified by match to protein family HMM PF01527
YP_001078737.1	identified by match to protein family HMM PF00450
YP_001078738.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_001078745.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687
YP_001078748.1	upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism
YP_001078749.1	identified by match to protein family HMM PF00581
YP_001078752.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001078753.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078754.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001078758.1	identified by match to protein family HMM PF05988
YP_001078759.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001078761.1	identified by match to protein family HMM PF00903
YP_001078766.1	identified by match to protein family HMM PF06202
YP_001078767.1	identified by match to protein family HMM PF01966
YP_001078769.1	identified by match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_001078772.3	identified by match to protein family HMM PF01103; match to protein family HMM PF01734; match to protein family HMM PF07244
YP_001078773.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001078775.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078776.1	identified by match to protein family HMM TIGR01409
YP_001078777.1	catalyzes the formation of glutamate from glutamine
YP_001078779.1	identified by match to protein family HMM PF01527
YP_001078780.1	identified by match to protein family HMM PF00665
YP_001078782.2	identified by match to protein family HMM PF03895; match to protein family HMM PF05662; match to protein family HMM TIGR03304
YP_001078788.1	identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786
YP_001078789.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001078790.1	identified by match to protein family HMM PF01039
YP_001078791.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001078792.1	identified by match to protein family HMM PF00440
YP_001078796.1	identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732
YP_001078798.2	identified by match to protein family HMM PF00278; match to protein family HMM PF00355; match to protein family HMM PF02784
YP_001078800.1	identified by match to protein family HMM PF02373
YP_001078804.1	identified by match to protein family HMM PF00583
YP_001078806.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001078807.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078813.1	identified by match to protein family HMM PF02424
YP_001078814.2	identified by match to protein family HMM PF00171
YP_001078815.1	identified by match to protein family HMM PF00155
YP_001078818.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001078819.1	identified by match to protein family HMM TIGR01552
YP_001078820.1	identified by match to protein family HMM PF01266
YP_001078821.1	identified by match to protein family HMM PF00440
YP_001078823.1	identified by match to protein family HMM PF00614
YP_001078825.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_001078827.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR01409
YP_001078829.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_001078830.1	identified by match to protein family HMM PF00392
YP_001078831.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_001078832.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001078835.1	identified by match to protein family HMM PF00892
YP_001078836.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001078838.1	identified by match to protein family HMM PF06792
YP_001078841.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00127; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR02376
YP_001078842.1	identified by match to protein family HMM PF03781
YP_001078843.1	identified by match to protein family HMM PF02630
YP_001078845.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001078849.2	identified by match to protein family HMM TIGR03304
YP_001078851.1	identified by match to protein family HMM PF06812
YP_001078852.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001078853.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05231
YP_001078855.1	identified by match to protein family HMM PF05591
YP_001078856.1	identified by match to protein family HMM PF05943
YP_001078858.1	identified by match to protein family HMM PF05638
YP_001078859.1	identified by match to protein family HMM PF04965
YP_001078860.1	identified by match to protein family HMM PF05947
YP_001078861.1	identified by match to protein family HMM PF06996
YP_001078862.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001078863.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001078864.1	identified by match to protein family HMM PF00805
YP_001078865.1	identified by match to protein family HMM PF00805
YP_001078869.1	identified by match to protein family HMM PF05936
YP_001078883.1	identified by match to protein family HMM PF01527
YP_001078884.1	identified by match to protein family HMM PF00665
YP_001078889.1	identified by match to protein family HMM PF00816
YP_001078890.1	identified by match to protein family HMM PF01381
YP_001078892.1	identified by match to protein family HMM PF00324
YP_001078894.1	identified by match to protein family HMM PF02777
YP_001078895.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078897.1	identified by match to protein family HMM PF07690
YP_001078901.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001078902.1	identified by match to protein family HMM PF00582
YP_001078903.1	identified by match to protein family HMM PF00582
YP_001078905.1	identified by match to protein family HMM PF01609
YP_001078906.1	identified by match to protein family HMM PF00582
YP_001078908.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001078914.1	identified by match to protein family HMM PF01381; match to protein family HMM PF05899; match to protein family HMM PF07883
YP_001078917.1	associated with the biosynthesis repression of 4-hydroxy-2-alkylquinolines (HAQs) and HAQ-analogs, which act as extracellular signals that interact with quorum sensing
YP_001078919.1	identified by match to protein family HMM PF01752; match to protein family HMM PF08453
YP_001078922.1	identified by match to protein family HMM PF00266
YP_001078924.1	identified by match to protein family HMM PF02668
YP_001078932.1	identified by match to protein family HMM PF01835
YP_001078940.1	identified by match to protein family HMM PF03171
YP_001078941.2	identified by match to protein family HMM PF00583
YP_001078945.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001078946.1	identified by match to protein family HMM PF00324
YP_001078947.1	identified by match to protein family HMM PF01037
YP_001078949.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254
YP_001078951.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_001078952.1	identified by match to protein family HMM PF01094
YP_001078954.1	identified by match to protein family HMM PF00440
YP_001078955.1	identified by match to protein family HMM PF00563
YP_001078957.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001078958.1	identified by match to protein family HMM PF00816
YP_001078959.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304
YP_001078960.1	identified by match to protein family HMM PF01527
YP_001078961.1	identified by match to protein family HMM PF00665
YP_001078965.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001078967.1	identified by match to protein family HMM PF01557
YP_001078968.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370
YP_001078970.1	identified by match to protein family HMM PF04909
YP_001078972.1	identified by match to protein family HMM PF04295
YP_001078973.1	identified by match to protein family HMM PF08666
YP_001078974.1	identified by match to protein family HMM PF02653
YP_001078975.1	identified by match to protein family HMM PF00005
YP_001078976.1	identified by match to protein family HMM PF00532
YP_001078977.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001078978.1	identified by match to protein family HMM PF07519
YP_001078979.1	identified by match to protein family HMM PF00267
YP_001078981.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001078984.1	identified by match to protein family HMM PF00171
YP_001078985.1	catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA
YP_001078989.1	identified by match to protein family HMM PF08818
YP_001078990.1	identified by match to protein family HMM PF05899
YP_001078992.1	identified by match to protein family HMM PF08450
YP_001078995.1	identified by match to protein family HMM PF01047
YP_001079000.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001079004.1	identified by match to protein family HMM PF04185
YP_001079005.1	identified by match to protein family HMM PF03150
YP_001079007.1	identified by match to protein family HMM PF00654
YP_001079010.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079011.1	identified by match to protein family HMM PF05853
YP_001079012.1	identified by match to protein family HMM PF07690
YP_001079013.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_001079014.1	identified by match to protein family HMM PF02954; match to protein family HMM PF07905
YP_001079015.1	identified by match to protein family HMM PF02133
YP_001079017.1	identified by match to protein family HMM PF00903
YP_001079018.1	identified by match to protein family HMM PF00267
YP_001079021.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079022.1	identified by match to protein family HMM PF04632
YP_001079024.1	identified by match to protein family HMM PF00328
YP_001079025.1	identified by match to protein family HMM PF03576
YP_001079026.1	identified by match to protein family HMM PF00324
YP_001079027.1	identified by match to protein family HMM PF00196
YP_001079029.1	identified by match to protein family HMM PF03640
YP_001079030.1	identified by match to protein family HMM PF00267
YP_001079032.1	identified by match to protein family HMM PF03583
YP_001079033.1	identified by match to protein family HMM PF00665
YP_001079034.1	identified by match to protein family HMM PF01527
YP_001079036.1	identified by match to protein family HMM PF07883
YP_001079037.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001079038.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001079039.1	identified by match to protein family HMM PF03446
YP_001079040.1	identified by match to protein family HMM PF07005
YP_001079041.1	identified by match to protein family HMM PF00596
YP_001079042.1	identified by match to protein family HMM PF07690
YP_001079043.1	identified by match to protein family HMM PF01261
YP_001079044.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM PF08659
YP_001079045.1	identified by match to protein family HMM PF05118
YP_001079047.1	identified by match to protein family HMM PF05118
YP_001079049.1	identified by match to protein family HMM PF04069
YP_001079050.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001079051.1	identified by match to protein family HMM PF00528
YP_001079052.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_001079055.1	identified by match to protein family HMM PF03358
YP_001079063.1	identified by match to protein family HMM PF00903
YP_001079064.1	identified by match to protein family HMM PF01451
YP_001079065.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_001079066.1	identified by match to protein family HMM PF01527
YP_001079067.1	identified by match to protein family HMM PF00665
YP_001079068.1	identified by match to protein family HMM PF01476
YP_001079073.1	identified by match to protein family HMM PF00149
YP_001079074.1	identified by match to protein family HMM PF00665
YP_001079075.1	identified by match to protein family HMM PF01527
YP_001079077.2	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001079078.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR02288
YP_001079079.1	catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA
YP_001079080.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001079082.1	identified by match to protein family HMM TIGR02155
YP_001079083.1	identified by match to protein family HMM PF03562; match to protein family HMM PF06725
YP_001079084.1	protein associated with Co2+ and Mg2+ efflux
YP_001079085.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001079086.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001079087.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_001079088.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_001079089.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001079090.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_001079091.1	identified by match to protein family HMM PF01928
YP_001079092.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_001079093.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_001079094.1	identified by match to protein family HMM PF05299
YP_001079096.1	identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_001079100.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001079101.1	identified by match to protein family HMM PF01058; match to protein family HMM TIGR01957
YP_001079103.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR01773
YP_001079108.1	identified by match to protein family HMM PF03009; match to protein family HMM TIGR01409
YP_001079111.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_001079112.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001079113.1	identified by match to protein family HMM PF00857
YP_001079115.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_001079119.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_001079120.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001079121.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536
YP_001079122.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365
YP_001079123.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_001079124.1	identified by match to protein family HMM PF02900
YP_001079125.1	identified by match to protein family HMM PF00324
YP_001079127.1	identified by match to protein family HMM PF00665
YP_001079128.1	identified by match to protein family HMM PF01527
YP_001079131.1	identified by match to protein family HMM PF07859
YP_001079133.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001079134.1	identified by match to protein family HMM PF05853
YP_001079135.1	identified by match to protein family HMM PF04069
YP_001079136.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001079137.1	identified by match to protein family HMM PF07504
YP_001079138.1	identified by match to protein family HMM PF01546; match to protein family HMM PF04389
YP_001079139.1	identified by match to protein family HMM PF00267
YP_001079141.1	identified by match to protein family HMM PF04069
YP_001079142.1	identified by match to protein family HMM PF00884
YP_001079143.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079144.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001079145.1	identified by match to protein family HMM PF00324
YP_001079146.1	identified by match to protein family HMM PF04069
YP_001079147.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001079148.1	identified by match to protein family HMM PF00355
YP_001079150.1	identified by match to protein family HMM PF00766
YP_001079151.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_001079152.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00724; match to protein family HMM PF07992
YP_001079153.1	identified by match to protein family HMM PF02830
YP_001079154.1	identified by match to protein family HMM PF01244
YP_001079155.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001079156.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001079157.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02819
YP_001079158.1	identified by match to protein family HMM PF00532
YP_001079160.1	identified by match to protein family HMM PF02435
YP_001079161.1	identified by match to protein family HMM PF00251; match to protein family HMM PF08244
YP_001079163.1	identified by match to protein family HMM PF00529
YP_001079166.1	identified by match to protein family HMM TIGR01556
YP_001079168.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001079176.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001079177.1	identified by match to protein family HMM PF00691
YP_001079184.1	identified by match to protein family HMM PF00805
YP_001079185.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001079186.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001079190.1	identified by match to protein family HMM PF05947
YP_001079191.1	identified by match to protein family HMM PF04965
YP_001079192.1	identified by match to protein family HMM PF05638
YP_001079193.1	identified by match to protein family HMM PF05943
YP_003276038.1	VC_A0107 family
YP_001079194.1	identified by match to protein family HMM PF06812
YP_001079196.1	identified by match to protein family HMM PF02550
YP_001079197.1	identified by match to protein family HMM PF01066
YP_001079198.1	identified by match to protein family HMM PF03171
YP_001079201.1	identified by match to protein family HMM TIGR02320
YP_001079203.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212
YP_001079204.1	identified by match to protein family HMM PF01965
YP_001079208.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_001079209.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001079210.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001079211.2	identified by match to protein family HMM PF04168; match to protein family HMM PF04169; match to protein family HMM PF04174
YP_001079213.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001079214.1	identified by match to protein family HMM PF01841; match to protein family HMM PF08379
YP_001079215.1	identified by match to protein family HMM PF04168
YP_001079216.1	identified by match to protein family HMM PF04169; match to protein family HMM PF04174
YP_001079218.1	identified by match to protein family HMM PF00881
YP_001079220.1	identified by match to protein family HMM PF03067
YP_001079221.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137
YP_001079222.1	identified by match to protein family HMM PF01527
YP_001079223.1	identified by match to protein family HMM PF00665
YP_001079224.1	identified by match to protein family HMM PF00474
YP_001079226.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_001079229.1	identified by match to protein family HMM PF03350; match to protein family HMM TIGR00645
YP_001079230.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_001079231.1	identified by match to protein family HMM PF00210; match to protein family HMM TIGR00754
YP_001079232.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001079233.1	identified by match to protein family HMM PF04324
YP_001079234.1	identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352
YP_001079235.1	identified by match to protein family HMM PF01618
YP_001079236.1	identified by match to protein family HMM PF02472
YP_001079237.1	identified by match to protein family HMM PF01609
YP_001079241.1	identified by match to protein family HMM PF00583
YP_001079243.1	identified by match to protein family HMM PF02733
YP_001079244.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001079245.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079246.1	identified by match to protein family HMM PF00532
YP_001079247.1	identified by match to protein family HMM PF02653
YP_001079248.1	identified by match to protein family HMM PF00005
YP_001079249.1	identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689; match to protein family HMM TIGR01120
YP_001079250.1	identified by match to protein family HMM PF04198
YP_001079251.1	identified by match to protein family HMM PF00267
YP_001079252.1	identified by match to protein family HMM TIGR00725
YP_001079253.1	identified by match to protein family HMM PF00528
YP_001079255.1	identified by match to protein family HMM PF00005
YP_001079256.1	identified by match to protein family HMM PF00528
YP_001079258.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079261.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01785; match to protein family HMM TIGR01786
YP_001079262.1	identified by match to protein family HMM PF05171
YP_001079263.1	identified by match to protein family HMM PF01497
YP_001079265.1	identified by match to protein family HMM PF01032
YP_001079267.1	with HmuTU is involved in the import of hemin
YP_001079270.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_001079271.1	identified by match to protein family HMM PF01212
YP_001079272.1	identified by match to protein family HMM PF01654
YP_001079273.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_001079279.2	identified by match to protein family HMM PF00494
YP_001079282.1	identified by match to protein family HMM PF00903
YP_001079283.1	identified by match to protein family HMM PF01663
YP_001079285.1	identified by match to protein family HMM PF05359
YP_001079287.1	identified by match to protein family HMM PF06742; match to protein family HMM PF06863
YP_001079291.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_001079293.1	identified by match to protein family HMM PF00583
YP_001079299.1	identified by match to protein family HMM PF02308
YP_001079300.2	identified by match to protein family HMM PF07221
YP_001079301.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079305.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203
YP_001079306.1	identified by match to protein family HMM PF04055
YP_001079307.1	identified by match to protein family HMM PF08896; match to protein family HMM PF08898
YP_001079308.1	identified by match to protein family HMM PF08896; match to protein family HMM PF08898
YP_001079309.1	identified by match to protein family HMM PF08898
YP_001079312.1	identified by match to protein family HMM PF04303; match to protein family HMM TIGR02334
YP_001079313.1	Catalyzes the conversion of citrate to isocitrate
YP_001079314.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_001079315.1	catalyzes the formation of pyruvate and succinate from 2-methylisocitrate
YP_001079316.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF06506; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR02329
YP_001079318.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001079323.2	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01249
YP_001079324.1	identified by match to protein family HMM PF01804
YP_001079327.2	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079328.1	identified by match to protein family HMM PF03746
YP_001079329.1	identified by match to protein family HMM PF00364
YP_001079330.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001079331.1	identified by match to protein family HMM PF02682
YP_001079332.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_001079335.1	identified by match to protein family HMM PF00903
YP_001079336.1	identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326
YP_001079337.1	identified by match to protein family HMM PF02525
YP_001079338.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079344.1	identified by match to protein family HMM PF00805
YP_001079345.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001079346.3	identified by match to protein family HMM PF06812
YP_001079347.1	identified by match to protein family HMM PF06996
YP_001079348.1	identified by match to protein family HMM PF05947
YP_001079349.1	identified by match to protein family HMM PF04965
YP_001079350.1	identified by match to protein family HMM PF07024
YP_001079354.1	identified by match to protein family HMM PF05591
YP_001079355.1	identified by match to protein family HMM PF05943
YP_001079356.1	identified by match to protein family HMM PF05638
YP_001079359.1	identified by match to protein family HMM PF05936
YP_001079360.1	identified by match to protein family HMM PF00691
YP_001079366.2	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079368.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001079369.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001079370.1	identified by match to protein family HMM PF03241
YP_001079371.1	identified by match to protein family HMM PF02668
YP_001079372.1	identified by match to protein family HMM PF05141
YP_001079373.1	identified by match to protein family HMM PF01610
YP_001079375.1	identified by match to protein family HMM PF07971; match to protein family HMM TIGR01180
YP_001079380.1	identified by match to protein family HMM PF00106
YP_001079381.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079382.1	identified by match to protein family HMM PF01266
YP_001079383.1	identified by match to protein family HMM PF00497
YP_001079387.1	identified by match to protein family HMM PF00487
YP_001079390.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079391.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_001079394.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_001079395.1	identified by match to protein family HMM PF01527
YP_001079396.1	identified by match to protein family HMM PF00665
YP_001079399.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001079400.1	identified by match to protein family HMM PF03328
YP_001079401.1	identified by match to protein family HMM PF00267
YP_001079402.1	identified by match to protein family HMM PF03972; match to protein family HMM TIGR01409
YP_001079405.1	identified by match to protein family HMM TIGR00688
YP_001079406.1	identified by match to protein family HMM PF00708
YP_001079407.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_001079410.1	identified by match to protein family HMM PF00535
YP_001079413.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001079414.1	identified by match to protein family HMM PF04055
YP_001079416.1	identified by match to protein family HMM PF08883
YP_001079418.1	identified by match to protein family HMM PF00202
YP_001079421.1	identified by match to protein family HMM PF01609
YP_001079424.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079430.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079433.1	identified by match to protein family HMM PF00534
YP_001079434.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001079435.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001079437.1	identified by match to protein family HMM PF02585
YP_001079438.1	identified by match to protein family HMM PF00535
YP_001079439.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001079441.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001079444.1	identified by match to protein family HMM PF01075
YP_001079445.1	identified by match to protein family HMM PF00535
YP_001079446.1	identified by match to protein family HMM PF02543
YP_001079447.1	identified by match to protein family HMM PF01075
YP_001079449.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079451.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00072; match to protein family HMM PF00664
YP_001079452.1	identified by match to protein family HMM PF04972
YP_001079454.1	identified by match to protein family HMM PF02666
YP_001079456.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001079459.1	identified by match to protein family HMM PF03446
YP_001079462.1	identified by match to protein family HMM PF01648
YP_001079464.1	identified by match to protein family HMM PF07690
YP_001079466.1	identified by match to protein family HMM PF01613
YP_001079470.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001079471.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_001079472.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001079473.1	identified by match to protein family HMM PF00676
YP_001079480.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079483.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00732
YP_001079484.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01734; match to protein family HMM PF07992
YP_001079485.1	identified by match to protein family HMM PF01258
YP_001079487.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_001079488.1	class I; catalyzes the formation of deoxyribonucleotides from their corresponding ribonucleotides
YP_001079492.1	identified by match to protein family HMM PF00916; match to protein family HMM PF01740
YP_001079494.1	identified by match to protein family HMM PF00571
YP_001079496.1	identified by match to protein family HMM PF00011
YP_001079498.1	identified by match to protein family HMM TIGR03304
YP_001079499.1	identified by match to protein family HMM PF00501
YP_001079501.1	identified by match to protein family HMM PF00196
YP_001079503.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001079504.1	identified by match to protein family HMM PF02668
YP_001079505.1	identified by match to protein family HMM PF05853
YP_001079506.1	identified by match to protein family HMM PF07690
YP_001079507.1	identified by match to protein family HMM PF06821
YP_001079509.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001079510.1	identified by match to protein family HMM PF00037
YP_001079511.1	identified by match to protein family HMM PF04976
YP_001079513.1	identified by match to protein family HMM PF01522
YP_001079517.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912
YP_001079518.1	identified by match to protein family HMM PF00085
YP_001079521.1	identified by match to protein family HMM PF00267
YP_001079523.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001079528.1	identified by match to protein family HMM PF00583
YP_001079529.1	identified by match to protein family HMM PF00583
YP_001079531.1	identified by match to protein family HMM PF01523
YP_001079534.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730; match to protein family HMM PF08269
YP_001079535.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001079536.1	identified by match to protein family HMM PF01610
YP_001079537.1	identified by match to protein family HMM PF01609
YP_001079538.1	identified by match to protein family HMM PF05494
YP_001079541.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_001079542.1	identified by match to protein family HMM PF00561; match to protein family HMM PF05057; match to protein family HMM PF07819
YP_001079547.1	identified by match to protein family HMM PF02687
YP_001079548.1	identified by match to protein family HMM PF00005
YP_001079549.1	identified by match to protein family HMM PF00743
YP_001079550.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079551.1	identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF01370; match to protein family HMM PF02801; match to protein family HMM PF08659
YP_001079552.2	identified by match to protein family HMM PF00698
YP_001079555.1	identified by match to protein family HMM PF04333
YP_001079557.1	identified by match to protein family HMM PF02627
YP_001079558.1	identified by match to protein family HMM PF00202
YP_001079559.1	identified by match to protein family HMM PF03417
YP_001079560.1	similar to ATP-binding component of ABC transporters
YP_001079561.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_001079562.1	similar to periplasmic-binding component of ABC transporters
YP_001079565.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787
YP_001079570.1	identified by match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00254
YP_001079571.1	identified by match to protein family HMM PF04509
YP_001079572.2	identified by match to protein family HMM PF00072
YP_001079574.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001079575.1	identified by match to protein family HMM PF03358
YP_001079579.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014
YP_001079581.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001079582.1	identified by match to protein family HMM PF01609
YP_001079584.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001079585.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001079586.1	negatively supercoils closed circular double-stranded DNA
YP_001079587.1	identified by match to protein family HMM PF01527
YP_001079588.1	identified by match to protein family HMM PF00665
YP_001079589.1	identified by match to protein family HMM TIGR01352
YP_001079592.1	identified by match to protein family HMM PF04932
YP_001079593.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001079594.1	identified by match to protein family HMM PF03741
YP_001079595.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_001079596.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_001079598.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_001079599.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001079600.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001079601.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001079602.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001079605.1	identified by match to protein family HMM PF00665
YP_001079606.1	identified by match to protein family HMM PF01527
YP_001079608.1	identified by match to protein family HMM PF01435
YP_001079610.1	identified by match to protein family HMM PF00561
YP_001079612.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02195
YP_001079614.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001079615.1	identified by match to protein family HMM PF03591
YP_001079616.1	identified by match to protein family HMM PF05437
YP_001079617.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001079619.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001079620.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_001079621.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001079622.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_001079623.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001079624.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_001079630.1	identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666
YP_001079631.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001079632.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001079633.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_001079635.1	identified by match to protein family HMM PF04248
YP_001079636.1	identified by match to protein family HMM PF06240
YP_001079637.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08361
YP_001079638.1	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730
YP_001079639.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00915
YP_001079640.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001079644.1	identified by match to protein family HMM PF01527
YP_001079645.1	identified by match to protein family HMM PF00665
YP_001079648.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001079649.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818
YP_001079650.1	identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821
YP_001079651.1	identified by match to protein family HMM PF00950
YP_001079652.1	identified by match to protein family HMM PF00005
YP_001079653.1	identified by match to protein family HMM PF01297
YP_001079654.1	identified by match to protein family HMM PF01475
YP_001079655.1	Converts D-sorbitol to L-sorbose
YP_001079656.1	identified by match to protein family HMM PF00294
YP_001079658.1	identified by match to protein family HMM PF01547
YP_001079659.1	identified by match to protein family HMM PF00528
YP_001079660.1	identified by match to protein family HMM PF00528
YP_001079661.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001079662.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_001079664.1	identified by match to protein family HMM TIGR01409
YP_001079665.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079666.1	identified by match to protein family HMM PF00144
YP_001079667.1	identified by match to protein family HMM PF07690
YP_001079668.1	identified by match to protein family HMM PF04198
YP_001079669.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312
YP_001079670.1	identified by match to protein family HMM PF01232; match to protein family HMM PF08125
YP_001079671.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079672.1	catalyzes the formation of benzaldehyde from benzoylformate
YP_001079673.1	identified by match to protein family HMM PF00171
YP_001079674.1	identified by match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_001079676.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001079677.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_001079678.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814
YP_001079679.1	identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035
YP_001079680.1	identified by match to protein family HMM PF01037
YP_001079681.1	identified by match to protein family HMM PF01613
YP_001079682.2	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_001079684.1	identified by match to protein family HMM PF01904
YP_001079685.1	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001079686.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_001079687.1	identified by match to protein family HMM PF00899
YP_001079690.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001079691.1	identified by match to protein family HMM PF00892
YP_001079694.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_001079695.1	identified by match to protein family HMM PF00037; match to protein family HMM PF08331; match to protein family HMM TIGR00276
YP_001079696.1	identified by match to protein family HMM PF01035; match to protein family HMM TIGR00589
YP_001079697.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001079698.1	identified by match to protein family HMM PF00501
YP_001079699.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_001079700.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_001079701.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_001079702.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001079703.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001079705.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001079706.1	identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695
YP_001079708.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079709.1	identified by match to protein family HMM PF01609
YP_001079710.1	identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_001079712.1	Converts isocitrate to alpha ketoglutarate
YP_001079713.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093
YP_001079714.1	identified by match to protein family HMM PF00665
YP_001079715.1	identified by match to protein family HMM PF01527
YP_001079716.1	identified by match to protein family HMM PF00665
YP_001079717.1	identified by match to protein family HMM PF01527
YP_001079719.1	catalyzes the interconversion of chorismate to prephenate
YP_001079723.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_001079726.1	identified by match to protein family HMM PF04226
YP_001079732.1	identified by match to protein family HMM PF01610
YP_001079733.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_001079734.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079735.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_001079737.1	identified by match to protein family HMM PF01433; match to protein family HMM TIGR02414
YP_001079740.1	identified by match to protein family HMM PF01169
YP_001079742.1	Catalyzes the deamination of guanine
YP_001079743.1	identified by match to protein family HMM PF00860
YP_001079744.1	catalyzes the formation of inosine from adenosine
YP_001079745.1	identified by match to protein family HMM PF02625; match to protein family HMM TIGR02964
YP_001079747.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_001079748.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001079749.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_001079751.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001079753.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001079754.1	identified by match to protein family HMM PF01494
YP_001079756.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_001079757.1	identified by match to protein family HMM PF01512
YP_001079760.1	identified by match to protein family HMM PF00126
YP_001079763.1	identified by match to protein family HMM PF00665
YP_001079764.1	identified by match to protein family HMM PF01527
YP_001079765.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_001079766.1	Involved in ubiquinone biosynthesis
YP_001079767.2	identified by match to protein family HMM PF00691
YP_001079770.1	negatively supercoils closed circular double-stranded DNA
YP_001079772.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001079773.1	identified by match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807
YP_001079774.1	fusion of tyrA/aroA
YP_001079775.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001079776.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001079777.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001079778.1	identified by match to protein family HMM PF01609
YP_001079780.1	identified by match to protein family HMM PF00515
YP_001079781.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_001079782.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02198
YP_001079783.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR02197
YP_001079786.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_001079787.1	identified by match to protein family HMM TIGR02282
YP_001079788.1	identified by match to protein family HMM PF00850
YP_001079789.1	identified by match to protein family HMM PF00561
YP_001079790.1	part of the metNIQ transport system for methionine
YP_001079791.1	identified by match to protein family HMM PF00528
YP_001079792.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001079793.1	identified by match to protein family HMM PF01012
YP_001079794.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_001079797.1	catalyzes the oxidative deamination of D-amino acids
YP_001079798.1	identified by match to protein family HMM PF01037
YP_001079799.1	identified by match to protein family HMM PF04055
YP_001079803.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001079804.1	Essential for efficient processing of 16S rRNA
YP_001079805.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001079806.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001079807.1	identified by match to protein family HMM PF00583
YP_001079809.1	identified by match to protein family HMM PF00293
YP_001079810.1	catalyzes the formation of adenosylcobinamide-phosphate from adenosylcobyric acid
YP_001079812.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001079813.1	identified by match to protein family HMM PF01435
YP_001079814.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_001079815.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_001079816.2	identified by match to protein family HMM PF04751
YP_001079817.1	identified by match to protein family HMM PF01523
YP_001079818.1	identified by match to protein family HMM PF01609
YP_001079819.1	identified by match to protein family HMM PF00186
YP_001079820.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001079825.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001079826.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_001079827.1	identified by match to protein family HMM PF01609
YP_001079830.1	identified by match to protein family HMM PF01022
YP_001079833.1	identified by match to protein family HMM PF03061
YP_001079834.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_001079836.1	identified by match to protein family HMM PF00665
YP_001079837.1	identified by match to protein family HMM PF01527
YP_001079839.1	identified by match to protein family HMM PF02653
YP_001079840.1	identified by match to protein family HMM PF00005
YP_001079841.2	identified by match to protein family HMM PF00005
YP_001079843.1	identified by match to protein family HMM PF00583
YP_001079844.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_001079845.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_001079846.1	identified by match to protein family HMM PF01370
YP_001079848.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001079849.1	identified by match to protein family HMM PF04234
YP_001079850.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079851.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001079852.1	identified by match to protein family HMM PF00561
YP_001079853.1	identified by match to protein family HMM PF03473
YP_001079854.1	identified by match to protein family HMM PF00701
YP_001079855.1	identified by match to protein family HMM PF00596
YP_001079856.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001079858.1	identified by match to protein family HMM PF00665
YP_001079859.1	identified by match to protein family HMM PF01527
YP_001079860.1	identified by match to protein family HMM PF00155
YP_001079861.1	identified by match to protein family HMM PF00892
YP_001079863.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001079864.1	molecular chaperone
YP_001079865.1	identified by match to protein family HMM PF04345
YP_001079869.1	identified by match to protein family HMM PF00474
YP_001079870.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_001079871.1	identified by match to protein family HMM PF00923; match to protein family HMM TIGR00874
YP_001079872.1	identified by match to protein family HMM PF00860; match to protein family HMM PF03594; match to protein family HMM TIGR00843
YP_001079874.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001079875.1	identified by match to protein family HMM PF00034
YP_001079876.1	identified by match to protein family HMM PF00034
YP_001079877.1	identified by match to protein family HMM PF01610
YP_001079878.1	identified by match to protein family HMM PF08897
YP_001079879.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_001079880.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_001079881.1	Involved in the electron transport chain
YP_001079883.1	identified by match to protein family HMM PF06850; match to protein family HMM TIGR01849
YP_001079886.1	identified by match to protein family HMM PF00723
YP_001079890.1	identified by match to protein family HMM PF01580
YP_001079891.1	identified by match to protein family HMM PF03724
YP_001079893.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_001079898.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001079899.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_001079900.1	identified by match to protein family HMM PF00581
YP_001079902.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_001079903.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02203
YP_001079904.1	identified by match to protein family HMM PF00534
YP_001079905.1	identified by match to protein family HMM PF01075
YP_001079907.1	identified by match to protein family HMM PF00534
YP_001079908.1	identified by match to protein family HMM PF01075
YP_001079909.1	identified by match to protein family HMM PF00535
YP_001079912.1	identified by match to protein family HMM PF07690
YP_001079916.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02957
YP_001079924.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_001079926.1	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001079927.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001079928.1	SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001079929.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_001079930.1	catalyzes the formation of deamido-NAD(+) from nicotinate ribonucleotide and ATP
YP_001079931.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001079932.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001079933.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_001079935.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001079936.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001079937.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_001079938.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001079941.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001079942.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001079943.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_001079946.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001079948.1	identified by match to protein family HMM PF00893
YP_001079953.1	identified by match to protein family HMM PF01152
YP_001079954.1	identified by match to protein family HMM PF07973
YP_001079955.1	identified by match to protein family HMM PF06041
YP_001079956.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001079957.1	identified by match to protein family HMM PF01610
YP_001079958.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001079961.1	Converts glucose to D-glucono-1,5 lactone
YP_001079962.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_001079963.1	identified by match to protein family HMM PF00440
YP_001079964.1	identified by match to protein family HMM PF01219
YP_001079965.1	identified by match to protein family HMM PF00534
YP_001079966.1	identified by match to protein family HMM PF00149
YP_001079967.1	identified by match to protein family HMM PF06271
YP_001079970.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001079971.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_001079972.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_001079973.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001079974.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001079975.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_001079977.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_001079978.1	identified by match to protein family HMM PF00484
YP_001079982.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001079983.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726
YP_001079984.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02824
YP_001079985.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001079986.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_001079987.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079988.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001079989.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079990.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079991.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079992.1	identified by match to protein family HMM PF01512; match to protein family HMM TIGR01959
YP_001079993.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001079994.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079995.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079996.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079997.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001079998.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001079999.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001080000.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001080002.1	identified by match to protein family HMM PF00293
YP_001080003.1	identified by match to protein family HMM PF06676
YP_001080004.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001080005.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001080006.1	identified by match to protein family HMM PF01575
YP_001080007.1	identified by match to protein family HMM PF01575
YP_001080010.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001080011.1	identified by match to protein family HMM PF01636
YP_001080012.1	identified by match to protein family HMM PF00300
YP_001080013.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001080015.1	identified by match to protein family HMM PF02798
YP_001080016.1	catalyzes the transfer of an amino moiety
YP_001080018.1	identified by match to protein family HMM PF03883
YP_001080019.1	identified by match to protein family HMM PF00246
YP_001080022.1	identified by match to protein family HMM PF00196
YP_001080027.1	identified by match to protein family HMM PF02082
YP_001080028.1	identified by match to protein family HMM PF01370; match to protein family HMM PF05368
YP_001080031.2	identified by match to protein family HMM PF01037
YP_001080032.1	identified by match to protein family HMM PF00005
YP_001080033.1	identified by match to protein family HMM PF00528
YP_001080034.1	identified by match to protein family HMM PF01547
YP_001080037.1	identified by match to protein family HMM PF00324
YP_001080039.1	identified by match to protein family HMM PF05976
YP_001080041.1	identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450
YP_001080042.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609
YP_001080044.1	identified by match to protein family HMM PF00472
YP_001080047.1	identified by match to protein family HMM PF00892
YP_001080050.1	identified by match to protein family HMM PF01527
YP_001080051.1	identified by match to protein family HMM PF00665
YP_001080052.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001080053.1	identified by match to protein family HMM TIGR02953
YP_001080056.1	identified by match to protein family HMM PF00174
YP_001080059.1	identified by match to protein family HMM PF00892
YP_001080060.1	identified by match to protein family HMM PF07690
YP_001080062.1	identified by match to protein family HMM PF03988
YP_001080064.1	identified by match to protein family HMM PF00149
YP_001080066.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001080067.1	identified by match to protein family HMM PF00528
YP_001080070.1	identified by match to protein family HMM PF00528
YP_001080071.1	identified by match to protein family HMM PF01547
YP_001080072.1	identified by match to protein family HMM PF00532
YP_001080078.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001080081.1	identified by match to protein family HMM PF07040
YP_001080084.1	identified by match to protein family HMM PF04299
YP_001080085.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001080086.1	identified by match to protein family HMM PF01037
YP_001080087.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135
YP_001080088.1	identified by match to protein family HMM PF03055
YP_001080090.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080091.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001080095.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001080097.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001080099.1	identified by match to protein family HMM PF00011
YP_001080100.1	identified by match to protein family HMM PF00011
YP_001080103.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_001080105.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080106.1	identified by match to protein family HMM PF03817; match to protein family HMM TIGR00807
YP_001080107.1	identified by match to protein family HMM PF03818; match to protein family HMM TIGR00808
YP_001080109.1	identified by match to protein family HMM TIGR01110
YP_001080110.1	acyl carrier protein of malonate decarboxylase
YP_001080111.1	The beta subunit catalyzes the decarboxylation of the malonyl moiety on coenzyme A
YP_001080112.1	identified by match to protein family HMM PF06833; match to protein family HMM TIGR03134
YP_001080113.1	catalyzes the transfer of 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-acyl carrier protein of malonate dehydrogenase to form holo-acyl carrier protein
YP_001080114.1	identified by match to protein family HMM PF01874; match to protein family HMM TIGR03132
YP_001080115.1	identified by match to protein family HMM TIGR03131
YP_001080119.1	identified by match to protein family HMM PF00665
YP_001080120.1	identified by match to protein family HMM PF01527
YP_001080121.1	identified by match to protein family HMM PF00043
YP_001080122.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001080123.1	identified by match to protein family HMM PF02694
YP_001080124.1	3'-5' exonuclease of DNA polymerase III
YP_001080125.1	identified by match to protein family HMM PF00075
YP_001080126.1	identified by match to protein family HMM PF08241
YP_001080127.1	identified by match to protein family HMM PF00753
YP_001080128.2	identified by match to protein family HMM PF01464; match to protein family HMM PF01476; match to protein family HMM PF06474
YP_001080129.1	identified by match to protein family HMM PF07690
YP_001080132.1	identified by match to protein family HMM PF00165
YP_001080133.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001080134.1	identified by match to protein family HMM PF01810
YP_001080135.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001080136.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001080138.1	identified by match to protein family HMM PF01985
YP_001080139.1	identified by match to protein family HMM PF01728
YP_001080140.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_001080141.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_001080142.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001080143.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00975
YP_001080144.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_001080145.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_001080146.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_001080147.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_001080148.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154
YP_001080149.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966
YP_001080150.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001080152.1	identified by match to protein family HMM PF02541
YP_001080159.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249
YP_001080164.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001080167.1	identified by match to protein family HMM PF00501
YP_001080170.2	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001080171.1	identified by match to protein family HMM PF01527
YP_001080172.1	identified by match to protein family HMM PF00665
YP_001080176.1	identified by match to protein family HMM PF05488
YP_001080177.1	identified by match to protein family HMM PF02409; match to protein family HMM PF05583; match to protein family HMM PF09278; match to protein family HMM TIGR00027
YP_001080178.2	identified by match to protein family HMM PF00155
YP_001080182.1	identified by match to protein family HMM PF00128
YP_001080183.1	identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217
YP_001080184.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402
YP_001080185.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02100
YP_001080188.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02456; match to protein family HMM TIGR02457
YP_001080189.1	identified by match to protein family HMM PF00128
YP_001080192.1	identified by match to protein family HMM PF00041; match to protein family HMM TIGR01840
YP_001080201.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080202.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001080205.1	identified by match to protein family HMM PF05666
YP_001080208.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001080210.1	identified by match to protein family HMM PF03895; match to protein family HMM PF05658; match to protein family HMM PF05662
YP_001080211.1	identified by match to protein family HMM PF00691
YP_001080212.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001080213.1	identified by match to protein family HMM PF00816
YP_001080217.1	identified by match to protein family HMM PF00652; match to protein family HMM PF01344; match to protein family HMM PF09118
YP_001080224.1	identified by match to protein family HMM PF05488
YP_001080226.1	identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646
YP_001080228.1	identified by match to protein family HMM PF00665
YP_001080229.1	identified by match to protein family HMM PF01527
YP_001080232.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_001080236.1	identified by match to protein family HMM PF04909
YP_001080237.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001080240.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080244.1	identified by match to protein family HMM PF05229
YP_001080245.1	identified by match to protein family HMM PF05229
YP_001080246.1	identified by match to protein family HMM PF05229
YP_001080249.1	identified by match to protein family HMM PF05229
YP_001080251.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001080252.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04545
YP_001080255.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001080257.1	identified by match to protein family HMM PF00529
YP_001080259.1	enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity
YP_001080260.1	identified by match to protein family HMM PF04185
YP_001080261.1	identified by match to protein family HMM PF03150
YP_001080267.1	identified by match to protein family HMM PF00293
YP_001080268.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001080271.1	identified by match to protein family HMM PF02515
YP_001080272.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001080273.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080274.1	identified by match to protein family HMM PF06779
YP_001080275.1	identified by match to protein family HMM PF01527
YP_001080276.1	identified by match to protein family HMM PF00665
YP_001080280.1	identified by match to protein family HMM PF00293
YP_001080281.1	identified by match to protein family HMM PF01906
YP_001080283.1	identified by match to protein family HMM PF00465
YP_001080285.1	identified by match to protein family HMM PF03061
YP_001080286.1	identified by match to protein family HMM PF02653
YP_001080287.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_001080288.1	identified by match to protein family HMM PF00005
YP_001080289.1	identified by match to protein family HMM PF06845
YP_001080290.1	identified by match to protein family HMM PF01261
YP_001080291.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_001080292.1	identified by match to protein family HMM PF00294
YP_001080293.1	identified by match to protein family HMM PF00005
YP_001080294.1	identified by match to protein family HMM PF02653
YP_001080296.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001080297.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001080298.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_001080300.1	identified by match to protein family HMM PF01206
YP_001080302.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001080303.1	identified by match to protein family HMM PF01476
YP_001080304.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF05226
YP_001080306.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_001080307.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_001080308.1	identified by match to protein family HMM PF00580
YP_001080309.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_001080310.1	identified by match to protein family HMM PF07690
YP_001080311.1	identified by match to protein family HMM PF00015
YP_001080312.1	identified by match to protein family HMM PF00529
YP_001080313.1	identified by match to protein family HMM PF07869
YP_001080314.1	identified by match to protein family HMM PF04632
YP_001080315.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001080316.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080318.1	identified by match to protein family HMM PF00149
YP_001080319.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001080321.1	identified by match to protein family HMM PF00258; match to protein family HMM PF03358; match to protein family HMM TIGR01755
YP_001080322.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_001080325.1	identified by match to protein family HMM PF00571
YP_001080328.3	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001080330.1	identified by match to protein family HMM PF00665
YP_001080331.1	identified by match to protein family HMM PF01527
YP_001080332.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001080333.1	identified by match to protein family HMM PF00497
YP_001080334.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_001080335.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_001080336.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001080337.1	identified by match to protein family HMM PF00293
YP_001080338.1	identified by match to protein family HMM PF03928
YP_001080339.1	identified by match to protein family HMM PF00893
YP_001080340.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_001080344.1	catalyzes the release of sulfite from alkanesulfonates
YP_001080345.1	identified by match to protein family HMM PF00528
YP_001080346.1	identified by match to protein family HMM PF00005
YP_001080347.1	identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638
YP_001080351.1	identified by match to protein family HMM PF01527
YP_001080352.1	identified by match to protein family HMM PF00665
YP_001080353.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00742
YP_001080355.1	identified by match to protein family HMM PF00375
YP_001080358.1	identified by match to protein family HMM PF01638
YP_001080359.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001080360.1	identified by match to protein family HMM PF00248
YP_001080361.1	identified by match to protein family HMM PF03773
YP_001080363.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291
YP_001080364.1	involved in the export of lipooligosaccharides during nodulation
YP_001080365.1	identified by match to protein family HMM PF00582
YP_001080368.1	Represses a number of genes involved in the response to DNA damage
YP_001080369.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR00971
YP_001080370.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02139
YP_001080371.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00969; match to protein family HMM TIGR02140
YP_001080372.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; match to protein family HMM TIGR00968
YP_001080373.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080375.1	identified by match to protein family HMM PF01527
YP_001080376.1	identified by match to protein family HMM PF00665
YP_001080377.1	identified by match to protein family HMM PF06798; match to protein family HMM PF08298
YP_001080378.1	identified by match to protein family HMM PF04285
YP_001080379.1	identified by match to protein family HMM PF04293
YP_001080380.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00883
YP_001080383.1	identified by match to protein family HMM PF00005
YP_001080384.1	identified by match to protein family HMM PF00528
YP_001080385.1	identified by match to protein family HMM PF04964
YP_001080386.1	identified by match to protein family HMM PF01478
YP_001080387.1	identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177
YP_001080388.1	identified by match to protein family HMM PF00263
YP_001080391.1	identified by match to protein family HMM PF00437
YP_001080392.1	identified by match to protein family HMM PF00482
YP_001080393.1	identified by match to protein family HMM PF00482
YP_001080395.1	identified by match to protein family HMM PF07811
YP_001080396.1	identified by match to protein family HMM PF07811
YP_001080398.1	identified by match to protein family HMM PF00497
YP_001080401.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001080402.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001080405.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08361
YP_001080406.1	MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery
YP_001080408.1	identified by match to protein family HMM PF00345
YP_001080410.1	identified by match to protein family HMM PF00005
YP_001080413.1	identified by match to protein family HMM PF01527
YP_001080414.1	identified by match to protein family HMM PF00665
YP_001080418.1	identified by match to protein family HMM PF00165
YP_001080419.1	identified by match to protein family HMM PF00532
YP_001080420.1	identified by match to protein family HMM PF00005
YP_001080421.1	identified by match to protein family HMM PF02653
YP_001080423.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001080424.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782
YP_001080425.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001080427.1	RNA polymerase sigma factor involved in the synthesis of the siderophores pyoverdine in Pseudomonas and malleobactin in Burkholderia; also involved in the synthesis of exotoxin and PrpL protease
YP_001080428.1	identified by match to protein family HMM PF03621
YP_001080429.1	identified by match to protein family HMM PF02668
YP_001080430.1	identified by match to protein family HMM PF00005
YP_001080431.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_001080433.1	identified by match to protein family HMM PF01497
YP_001080435.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01194
YP_001080436.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_001080437.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01733
YP_001080439.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001080441.1	identified by match to protein family HMM PF01656; match to protein family HMM PF07685
YP_001080442.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001080444.1	identified by match to protein family HMM PF03824; match to protein family HMM TIGR00802
YP_001080445.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683; match to protein family HMM TIGR02475
YP_001080446.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_001080448.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_001080455.1	identified by match to protein family HMM PF02839
YP_001080456.1	CbiG; identified by match to protein family HMM PF00590; match to protein family HMM PF01890; match to protein family HMM TIGR01466
YP_001080457.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_001080458.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_001080459.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM TIGR02435
YP_001080461.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR02467; match to protein family HMM TIGR02469
YP_001080463.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001080464.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR01465
YP_001080469.1	identified by match to protein family HMM PF01047
YP_001080470.1	identified by match to protein family HMM PF01094
YP_001080471.1	identified by match to protein family HMM PF01047
YP_001080472.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001080473.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080474.1	identified by match to protein family HMM PF03928
YP_001080475.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001080476.1	reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001080477.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_001080478.1	catalyzes the degradation of arginine to citruline and ammonia
YP_001080479.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_001080482.1	identified by match to protein family HMM PF00528
YP_001080483.1	identified by match to protein family HMM PF00005
YP_001080484.1	identified by match to protein family HMM PF00528
YP_001080485.1	identified by match to protein family HMM PF04069
YP_001080487.1	identified by match to protein family HMM PF07690
YP_001080488.1	activates fatty acids by binding to coenzyme A
YP_001080490.1	identified by match to protein family HMM PF00015
YP_001080491.1	identified by match to protein family HMM PF01584
YP_001080494.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001080495.1	identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304
YP_001080499.1	identified by match to protein family HMM PF02373
YP_001080502.1	identified by match to protein family HMM PF00665
YP_001080503.1	identified by match to protein family HMM PF01527
YP_001080504.1	identified by match to protein family HMM PF01266; match to protein family HMM PF05187
YP_001080505.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001080506.1	identified by match to protein family HMM PF03061
YP_001080511.1	identified by match to protein family HMM PF00196; match to protein family HMM PF08448
YP_001080513.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_001080514.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_001080515.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001080516.1	identified by match to protein family HMM PF01522
YP_001080517.1	identified by match to protein family HMM PF07366
YP_001080520.1	identified by match to protein family HMM PF00561
YP_001080521.1	identified by match to protein family HMM PF01042
YP_001080522.1	identified by match to protein family HMM PF01842; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001080524.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001080525.1	identified by match to protein family HMM PF00707; match to protein family HMM PF05198
YP_001080526.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_001080527.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001080528.2	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001080529.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001080530.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_001080531.1	identified by match to protein family HMM PF00376
YP_001080532.1	identified by match to protein family HMM PF05665
YP_001080537.1	identified by match to protein family HMM PF00665
YP_001080538.1	identified by match to protein family HMM PF01527
YP_001080539.1	identified by match to protein family HMM PF03992
YP_001080545.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080546.1	identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281
YP_001080547.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001080548.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001080549.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001080550.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001080551.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001080552.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001080553.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001080554.1	identified by match to protein family HMM PF00529
YP_001080555.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001080556.1	identified by match to protein family HMM PF01047
YP_001080558.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_001080559.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_001080560.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_001080561.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001080562.1	identified by match to protein family HMM PF03969
YP_001080566.1	identified by match to protein family HMM PF08479
YP_001080569.1	identified by match to protein family HMM PF01804
YP_001080570.1	identified by match to protein family HMM PF01527
YP_001080571.1	identified by match to protein family HMM PF00665
YP_001080572.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408
YP_001080573.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001080574.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_001080575.1	identified by match to protein family HMM PF01471; match to protein family HMM PF01510
YP_001080577.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_001080578.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_001080579.1	identified by match to protein family HMM PF01609
YP_001080580.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001080582.1	identified by match to protein family HMM PF04185
YP_001080584.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740
YP_001080585.1	identified by match to protein family HMM PF08857
YP_001080586.1	identified by match to protein family HMM PF00583
YP_001080587.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001080588.1	identified by match to protein family HMM PF00440
YP_001080590.1	identified by match to protein family HMM PF00501
YP_001080593.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_001080595.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_001080598.1	identified by match to protein family HMM PF07719
YP_001080599.1	identified by match to protein family HMM PF00482
YP_001080600.1	identified by match to protein family HMM PF00482
YP_001080603.1	identified by match to protein family HMM PF00263
YP_001080604.1	identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177
YP_001080605.1	identified by match to protein family HMM PF07811
YP_001080607.1	identified by match to protein family HMM PF00665
YP_001080608.1	identified by match to protein family HMM PF01527
YP_001080609.1	identified by match to protein family HMM PF00528
YP_001080610.1	identified by match to protein family HMM PF00528
YP_001080611.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_001080612.2	identified by match to protein family HMM PF01547
YP_001080614.1	identified by match to protein family HMM PF06945
YP_001080615.1	identified by match to protein family HMM PF03922; match to protein family HMM TIGR03304
YP_001080616.1	identified by match to protein family HMM PF03060
YP_001080617.1	identified by match to protein family HMM PF00171
YP_001080620.1	identified by match to protein family HMM PF00005
YP_001080621.1	identified by match to protein family HMM PF05170
YP_001080622.1	identified by match to protein family HMM PF00005
YP_001080623.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_001080627.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488
YP_001080628.1	catalyzes the formation of L-homocysteine from cystathionine
YP_001080630.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_001080631.1	identified by match to protein family HMM PF00294
YP_001080632.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_001080633.1	identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848
YP_001080634.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_001080635.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_001080636.1	identified by match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838
YP_001080637.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_001080638.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001080644.1	identified by match to protein family HMM PF00575
YP_001080646.1	identified by match to protein family HMM PF02705
YP_001080648.1	identified by match to protein family HMM PF00156
YP_001080649.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001080650.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001080653.1	identified by match to protein family HMM PF01145; match to protein family HMM TIGR01933
YP_001080654.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR03156
YP_001080655.1	Stimulates the elongation of poly(A) tails
YP_001080656.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001080658.1	identified by match to protein family HMM PF01011
YP_001080660.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001080661.2	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001080663.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048
YP_001080664.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_001080665.1	identified by match to protein family HMM PF01027
YP_001080666.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_001080667.1	identified by match to protein family HMM PF03372
YP_001080670.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_001080671.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_001080672.1	identified by match to protein family HMM PF01135; match to protein family HMM TIGR00080
YP_001080673.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001080674.1	identified by match to protein family HMM PF02515
YP_001080675.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001080676.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_001080677.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001080679.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_001080680.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001080681.1	identified by match to protein family HMM PF00376
YP_001080682.1	identified by match to protein family HMM PF07690
YP_001080683.1	identified by match to protein family HMM PF06167
YP_001080684.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001080687.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001080688.1	identified by match to protein family HMM PF02627
YP_001080691.1	identified by match to protein family HMM PF06078
YP_001080692.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001080694.1	identified by match to protein family HMM PF02082
YP_001080695.1	identified by match to protein family HMM PF01152
YP_001080696.1	identified by match to protein family HMM PF02391
YP_001080697.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_001080698.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001080700.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001080701.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001080703.1	identified by match to protein family HMM PF04430
YP_001080704.1	identified by match to protein family HMM PF02366
YP_001080706.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001080707.1	identified by match to protein family HMM PF00535
YP_001080708.1	identified by match to protein family HMM PF00551; match to protein family HMM PF02911
YP_001080709.2	identified by match to protein family HMM PF01370
YP_001080710.1	identified by match to protein family HMM PF01522
YP_001080711.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001080713.1	identified by match to protein family HMM PF02562
YP_001080714.1	identified by match to protein family HMM PF00877
YP_001080715.1	identified by match to protein family HMM PF01384
YP_001080716.1	identified by match to protein family HMM PF01865
YP_001080717.1	unwinds double stranded DNA
YP_001080719.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001080720.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001080722.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001080724.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001080725.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_001080726.1	identified by match to protein family HMM PF00116
YP_001080727.1	identified by match to protein family HMM PF00665
YP_001080728.1	identified by match to protein family HMM PF01527
YP_001080729.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00520
YP_001080731.1	identified by match to protein family HMM PF07769
YP_001080735.1	identified by match to protein family HMM PF00534
YP_001080737.1	identified by match to protein family HMM PF00924
YP_001080739.1	identified by match to protein family HMM PF00023
YP_001080740.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_001080741.1	identified by match to protein family HMM PF00583
YP_001080742.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_001080743.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_001080744.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_001080746.1	identified by match to protein family HMM PF05742
YP_001080747.1	identified by match to protein family HMM PF00583
YP_001080748.1	identified by match to protein family HMM PF07859
YP_001080749.1	identified by match to protein family HMM PF00107
YP_001080750.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_001080753.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001080754.1	identified by match to protein family HMM PF00857
YP_001080755.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001080757.1	activates fatty acids by binding to coenzyme A
YP_001080758.1	identified by match to protein family HMM PF02696
YP_001080759.1	identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357
YP_001080760.1	Involved in cell division; probably involved in intracellular septation
YP_001080761.1	identified by match to protein family HMM PF01722
YP_001080762.1	identified by match to protein family HMM PF00639
YP_001080763.1	identified by match to protein family HMM PF00583
YP_001080764.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001080766.1	identified by match to protein family HMM PF01266
YP_001080767.1	identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197
YP_001080769.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001080771.1	identified by match to protein family HMM PF00005
YP_001080772.1	identified by match to protein family HMM PF00657
YP_001080774.1	identified by match to protein family HMM PF00639
YP_001080782.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_001080783.1	binds and unfolds substrates as part of the ClpXP protease
YP_001080784.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001080785.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001080787.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_001080788.1	identified by match to protein family HMM PF01047
YP_001080790.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_001080791.1	identified by match to protein family HMM PF00196; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM PF08281
YP_001080792.1	identified by match to protein family HMM PF00267
YP_001080796.1	identified by match to protein family HMM PF00665
YP_001080797.1	identified by match to protein family HMM PF01527
YP_001080799.1	identified by match to protein family HMM PF00494
YP_001080800.1	identified by match to protein family HMM PF07394; match to protein family HMM TIGR01409
YP_001080801.1	identified by match to protein family HMM PF08811
YP_001080804.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_001080805.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001080806.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001080807.1	identified by match to protein family HMM PF02627
YP_001080809.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001080810.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001080811.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_001080813.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_001080814.1	identified by match to protein family HMM PF00291
YP_001080819.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001080821.1	identified by match to protein family HMM PF04012
YP_001080822.1	identified by match to protein family HMM PF07719
YP_001080823.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_001080825.1	identified by match to protein family HMM PF01609
YP_001080827.1	catalyzes the formation of glyoxylate from (S)-ureidoglycolate
YP_001080828.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_001080830.1	identified by match to protein family HMM PF01522
YP_001080832.1	identified by match to protein family HMM PF02133
YP_001080833.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001080834.1	identified by match to protein family HMM PF01610
YP_001080835.1	catalyzes the release of D-alanine from L-alanyl-D-glutamyl-meso-diaminopimelyl-D-alanine
YP_001080836.1	identified by match to protein family HMM PF00383
YP_001080843.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001080846.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001080848.1	identified by match to protein family HMM PF05988
YP_001080852.1	identified by match to protein family HMM PF03658
YP_001080853.1	identified by match to protein family HMM PF03364
YP_001080854.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001080855.1	identified by match to protein family HMM PF01145
YP_001080856.1	identified by match to protein family HMM PF01957
YP_001080857.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001080858.1	identified by match to protein family HMM PF05023
YP_001080860.1	identified by match to protein family HMM PF00082; match to protein family HMM PF09286
YP_001080862.1	identified by match to protein family HMM PF03618
YP_001080863.1	identified by match to protein family HMM PF00588
YP_001080864.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001080865.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_001080866.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_001080867.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001080868.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_001080869.1	identified by match to protein family HMM PF03938
YP_001080870.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_001080872.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_001080873.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001080874.1	identified by match to protein family HMM PF01148
YP_001080875.1	identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055
YP_001080876.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001080877.1	Catalyzes the phosphorylation of UMP to UDP
YP_001080878.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001080879.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001080881.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_001080882.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_001080883.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_001080884.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001080885.1	identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575
YP_001080888.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_001080889.1	identified by match to protein family HMM PF00892
YP_001080891.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_001080892.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_001080893.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_001080894.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001080895.1	involved in methylation of ribosomal protein L3
YP_001080896.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_001080897.1	identified by match to protein family HMM PF00255
YP_001080898.1	identified by match to protein family HMM PF00005
YP_001080900.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001080901.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001080902.1	identified by match to protein family HMM PF07690
YP_001080903.1	identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097
YP_001080905.1	identified by match to protein family HMM PF08907
YP_001080906.1	identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758
YP_001080907.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_001080908.1	identified by match to protein family HMM PF00814
YP_001080909.1	identified by match to protein family HMM PF00887
YP_001080910.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001080911.1	identified by match to protein family HMM PF01609
YP_001080912.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_001080913.1	identified by match to protein family HMM PF00582
YP_001080914.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001080915.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01428; match to protein family HMM TIGR01493
YP_001080918.1	identified by match to protein family HMM PF03674
YP_001080919.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_001080920.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02311
YP_001080922.1	identified by match to protein family HMM PF00583
YP_001080924.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001080925.1	identified by match to protein family HMM PF01734
YP_001080926.1	identified by match to protein family HMM PF00877
YP_001080927.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_001080928.1	identified by match to protein family HMM PF00528
YP_001080929.1	identified by match to protein family HMM PF00528
YP_001080930.1	identified by match to protein family HMM PF00496
YP_001080932.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_001080935.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879
YP_001080937.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001080939.2	identified by match to protein family HMM PF00037
YP_001080940.1	identified by match to protein family HMM PF00440
YP_001080941.1	identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500
YP_001080944.1	identified by match to protein family HMM PF00206; match to protein family HMM PF02222; match to protein family HMM PF02655
YP_001080945.1	identified by match to protein family HMM PF00291
YP_001080946.1	identified by match to protein family HMM PF00288
YP_001080947.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001080948.1	identified by match to protein family HMM PF00535
YP_001080949.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001080950.1	identified by match to protein family HMM PF01757
YP_001080952.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_001080953.1	identified by match to protein family HMM PF00456
YP_001080957.1	identified by match to protein family HMM PF02668
YP_001080959.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733
YP_001080962.1	identified by match to protein family HMM PF05977; match to protein family HMM PF07690
YP_001080963.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM TIGR01733
YP_001080964.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_001080966.2	identified by match to protein family HMM PF00529; match to protein family HMM TIGR01409; match to protein family HMM TIGR01730
YP_001080967.1	identified by match to protein family HMM PF00873
YP_001080970.1	identified by match to protein family HMM PF00657; match to protein family HMM PF03797; match to protein family HMM TIGR01414
YP_001080974.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_001080976.1	identified by match to protein family HMM PF01171; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_001080977.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001080978.1	identified by match to protein family HMM PF00730
YP_001080979.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001080980.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001080981.1	identified by match to protein family HMM PF00160
YP_001080982.1	identified by match to protein family HMM PF00160
YP_001080983.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_001080985.1	identified by match to protein family HMM PF00132
YP_001080987.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050
YP_001080988.1	identified by match to protein family HMM PF00459
YP_001080993.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001080997.1	identified by match to protein family HMM PF08007
YP_001080998.1	identified by match to protein family HMM PF00753
YP_001081000.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001081002.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001081003.1	identified by match to protein family HMM PF02163
YP_001081004.1	identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057
YP_001081005.1	identified by match to protein family HMM PF02811
YP_001081006.1	identified by match to protein family HMM PF00561
YP_001081008.1	identified by match to protein family HMM PF04305
YP_001081009.1	identified by match to protein family HMM PF00132
YP_001081010.1	identified by match to protein family HMM PF01430
YP_001081012.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_001081013.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001081014.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001081015.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001081018.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_001081019.1	identified by match to protein family HMM PF01026
YP_001081020.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02211
YP_001081021.1	identified by match to protein family HMM PF02687; match to protein family HMM TIGR02212
YP_001081025.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_001081026.1	identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020
YP_001081027.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001081028.1	identified by match to protein family HMM PF05433
YP_001081030.1	identified by match to protein family HMM PF04384
YP_001081031.1	identified by match to protein family HMM PF00111; match to protein family HMM TIGR02007
YP_001081032.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_001081033.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_001081034.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011
YP_001081035.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999
YP_001081036.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_001081037.2	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001081038.1	identified by match to protein family HMM PF01451
YP_001081040.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02589
YP_001081041.1	identified by match to protein family HMM PF02754
YP_001081042.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001081043.1	identified by match to protein family HMM PF01609
YP_001081044.1	identified by match to protein family HMM TIGR01841
YP_001081045.1	identified by match to protein family HMM PF00768
YP_001081046.1	identified by match to protein family HMM PF01609
YP_001081047.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00364; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350
YP_001081048.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01348
YP_001081049.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_001081051.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_001081052.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_001081053.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001081054.1	identified by match to protein family HMM PF01432
YP_001081055.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001081057.1	identified by match to protein family HMM PF07690
YP_001081058.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00886
YP_001081060.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01580
YP_001081061.1	identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660
YP_001081062.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_001081063.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_001081064.1	identified by match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_001081065.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967
YP_001081066.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001081067.1	identified by match to protein family HMM PF01609
YP_001081068.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818
YP_001081069.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001081070.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_001081072.1	identified by match to protein family HMM PF00994
YP_001081075.1	identified by match to protein family HMM PF02239
YP_001081077.1	identified by match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967
YP_001081078.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_001081079.1	identified by match to protein family HMM PF04362
YP_001081080.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001081082.1	identified by match to protein family HMM PF02515
YP_001081083.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001081084.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081086.1	identified by match to protein family HMM PF00665
YP_001081087.1	identified by match to protein family HMM PF01527
YP_001081088.1	identified by match to protein family HMM PF08816
YP_001081092.1	identified by match to protein family HMM PF00768
YP_001081093.1	serine protease inhibitor, inhibits trypsin and other proteases
YP_001081102.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_001081103.1	identified by match to protein family HMM PF07690
YP_001081108.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_001081111.1	identified by match to protein family HMM PF01527
YP_001081112.1	identified by match to protein family HMM PF00665
YP_001081113.1	identified by match to protein family HMM PF00005
YP_001081114.1	identified by match to protein family HMM PF00528
YP_001081117.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001081118.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001081123.1	identified by match to protein family HMM PF00497; match to protein family HMM TIGR01096
YP_001081124.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001081125.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001081126.1	identified by match to protein family HMM PF00005
YP_001081128.1	identified by match to protein family HMM PF00543
YP_001081129.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001081130.1	identified by match to protein family HMM PF04339
YP_001081133.1	identified by match to protein family HMM PF01541
YP_001081134.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001081135.1	identified by match to protein family HMM PF00171
YP_001081136.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001081137.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001081139.1	identified by match to protein family HMM PF07219; match to protein family HMM PF07719; match to protein family HMM PF07721
YP_001081140.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane and the formation of precorrin-2 from uroporphyrin III and S-adenosyl-L-methionine by two sequential methylation reactions; functions in tetrapyrrole and heme biosynthesis
YP_001081141.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001081143.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_001081144.1	identified by match to protein family HMM PF01609
YP_001081146.1	identified by match to protein family HMM PF01209; match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001081148.1	identified by match to protein family HMM PF05229
YP_001081149.1	identified by match to protein family HMM PF05229
YP_001081151.1	identified by match to protein family HMM PF00577
YP_001081152.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001081153.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001081155.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03709; match to protein family HMM PF03711
YP_001081156.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_001081157.1	identified by match to protein family HMM PF00080
YP_001081158.1	identified by match to protein family HMM PF01656; match to protein family HMM PF01883
YP_001081159.1	identified by match to protein family HMM PF00691; match to protein family HMM PF05433
YP_001081161.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001081162.1	identified by match to protein family HMM PF00891
YP_001081164.1	identified by match to protein family HMM PF04357
YP_001081165.1	identified by match to protein family HMM PF01103; match to protein family HMM PF07244
YP_001081167.1	identified by match to protein family HMM PF02616
YP_001081168.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001081169.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001081170.1	identified by match to protein family HMM PF01656
YP_001081171.1	identified by match to protein family HMM PF07681
YP_001081172.1	catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation
YP_001081173.1	identified by match to protein family HMM PF02283
YP_001081174.1	CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
YP_001081176.1	identified by match to protein family HMM PF01497
YP_001081178.1	identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162
YP_001081179.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001081180.1	catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole
YP_001081181.1	identified by match to protein family HMM PF00005
YP_001081182.1	identified by match to protein family HMM PF01032
YP_001081183.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715
YP_001081185.1	identified by match to protein family HMM PF05164
YP_001081186.1	identified by match to protein family HMM PF01878
YP_001081187.1	identified by match to protein family HMM PF04402
YP_001081188.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001081190.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081191.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001081193.1	identified by match to protein family HMM PF01609
YP_001081194.1	identified by match to protein family HMM PF00034
YP_001081196.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_001081197.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001081198.1	identified by match to protein family HMM PF03739
YP_001081199.1	identified by match to protein family HMM PF03739
YP_001081200.1	identified by match to protein family HMM PF01903
YP_001081201.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001081202.1	identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034
YP_001081203.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001081204.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_001081205.1	identified by match to protein family HMM PF06073
YP_001081206.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_001081207.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081209.1	identified by match to protein family HMM PF00665
YP_001081210.1	identified by match to protein family HMM PF01527
YP_001081211.1	identified by match to protein family HMM PF00120
YP_001081212.1	identified by match to protein family HMM PF00117; match to protein family HMM PF07722
YP_001081216.1	identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017
YP_001081218.1	catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate
YP_001081219.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_001081220.1	identified by match to protein family HMM PF05962
YP_001081221.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001081222.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018
YP_001081223.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001081227.1	identified by match to protein family HMM PF00196; match to protein family HMM PF03472; match to protein family HMM PF04967
YP_001081231.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_001081232.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_001081233.1	identified by match to protein family HMM PF00487
YP_001081236.1	identified by match to protein family HMM PF01883
YP_001081239.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001081241.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02495
YP_001081242.1	identified by match to protein family HMM PF08859
YP_001081244.1	identified by match to protein family HMM PF01136
YP_001081245.1	identified by match to protein family HMM PF01136
YP_001081246.1	identified by match to protein family HMM PF03060
YP_001081248.1	identified by match to protein family HMM PF00027
YP_001081249.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001081250.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001081252.1	identified by match to protein family HMM PF05940
YP_001081254.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_001081255.1	identified by match to protein family HMM PF01458
YP_001081256.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01041; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_001081257.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_001081258.1	identified by match to protein family HMM PF01883
YP_001081260.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_001081261.1	identified by match to protein family HMM PF01814; match to protein family HMM TIGR02481
YP_001081263.1	identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433
YP_001081267.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02847
YP_001081268.1	identified by match to protein family HMM PF00487
YP_001081270.1	identified by match to protein family HMM PF00497
YP_001081271.1	identified by match to protein family HMM PF00043
YP_001081272.1	catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism
YP_001081273.1	catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation
YP_001081275.1	identified by match to protein family HMM PF04958; match to protein family HMM TIGR03244
YP_001081276.1	identified by match to protein family HMM PF04958
YP_001081277.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_001081279.1	identified by match to protein family HMM PF00165
YP_001081280.1	identified by match to protein family HMM PF00005
YP_001081281.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001081282.1	identified by match to protein family HMM PF00665
YP_001081283.1	identified by match to protein family HMM PF01527
YP_001081284.1	identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR01409
YP_001081286.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR00687
YP_001081287.1	identified by match to protein family HMM PF00561
YP_001081288.1	identified by match to protein family HMM PF00296
YP_001081290.1	identified by match to protein family HMM PF00535
YP_001081291.2	identified by match to protein family HMM PF04055
YP_001081292.1	identified by match to protein family HMM PF04794
YP_001081294.1	identified by match to protein family HMM PF01527
YP_001081295.1	identified by match to protein family HMM PF00665
YP_001081296.1	identified by match to protein family HMM PF01094
YP_001081298.1	identified by match to protein family HMM PF01266
YP_001081301.1	identified by match to protein family HMM PF00534
YP_001081305.1	identified by match to protein family HMM PF00005
YP_001081306.1	identified by match to protein family HMM PF00982; match to protein family HMM TIGR02400
YP_001081307.1	identified by match to protein family HMM PF02358; match to protein family HMM PF08282; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484
YP_001081309.1	identified by match to protein family HMM PF02630
YP_001081310.1	identified by match to protein family HMM PF04314
YP_001081312.1	identified by match to protein family HMM PF00583
YP_001081314.1	identified by match to protein family HMM PF02678; match to protein family HMM PF05726
YP_001081315.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081317.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_001081319.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001081321.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001081322.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001081323.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_001081324.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_001081325.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001081326.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001081327.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001081328.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001081329.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_001081330.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001081331.1	identified by match to protein family HMM PF05768
YP_001081332.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037
YP_001081333.1	identified by match to protein family HMM PF03888
YP_001081334.1	identified by match to protein family HMM PF03872
YP_001081335.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_001081337.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001081338.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001081339.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001081340.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_001081341.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_001081342.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001081344.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001081345.1	identified by match to protein family HMM PF02620
YP_001081346.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001081347.1	identified by match to protein family HMM PF00590
YP_001081348.1	identified by match to protein family HMM PF01343
YP_001081349.1	identified by match to protein family HMM PF00355
YP_001081352.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005
YP_001081353.2	identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757
YP_001081354.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_001081355.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_001081356.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_001081358.1	identified by match to protein family HMM PF00583
YP_001081359.1	identified by match to protein family HMM PF02646
YP_001081360.2	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001081362.1	identified by match to protein family HMM PF02589
YP_001081363.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_001081365.2	identified by match to protein family HMM PF00037
YP_001081366.1	identified by match to protein family HMM PF05981
YP_001081372.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_001081373.1	identified by match to protein family HMM PF01527
YP_001081374.1	identified by match to protein family HMM PF00665
YP_001081375.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02629; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001081376.1	identified by match to protein family HMM PF00953
YP_001081377.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001081379.1	identified by match to protein family HMM PF00535
YP_001081380.1	identified by match to protein family HMM PF00535; match to protein family HMM PF08242
YP_001081382.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001081383.1	identified by match to protein family HMM PF01757
YP_001081384.1	identified by match to protein family HMM PF00005
YP_001081385.1	identified by match to protein family HMM PF01061
YP_001081386.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01214
YP_001081388.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01207
YP_001081389.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_001081390.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_001081391.1	identified by match to protein family HMM PF01553
YP_001081392.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_001081393.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001081394.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001081395.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001081396.1	identified by match to protein family HMM PF02622
YP_001081399.1	identified by match to protein family HMM PF08543
YP_001081400.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001081401.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001081407.1	identified by match to protein family HMM PF01638
YP_001081408.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001081412.1	identified by match to protein family HMM PF03922
YP_001081416.1	identified by match to protein family HMM PF01638; match to protein family HMM PF03551
YP_001081417.1	identified by match to protein family HMM PF00753
YP_001081418.1	identified by match to protein family HMM PF01381
YP_001081419.1	identified by match to protein family HMM PF00583
YP_001081420.1	identified by match to protein family HMM PF01810
YP_001081421.1	identified by match to protein family HMM PF03009
YP_001081422.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001081424.1	identified by match to protein family HMM PF01925
YP_001081425.1	identified by match to protein family HMM PF00450
YP_001081428.1	identified by match to protein family HMM PF04972
YP_001081430.1	identified by match to protein family HMM PF01323
YP_001081431.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081432.1	identified by match to protein family HMM PF01032
YP_001081435.1	identified by match to protein family HMM PF00005
YP_001081436.1	identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783
YP_001081439.1	identified by match to protein family HMM PF01547
YP_001081441.1	identified by match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR02965
YP_001081442.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00941; match to protein family HMM PF01799; match to protein family HMM PF03450; match to protein family HMM TIGR02963
YP_001081444.1	identified by match to protein family HMM PF07690
YP_001081445.1	identified by match to protein family HMM PF00892
YP_001081446.1	identified by match to protein family HMM PF00165
YP_001081447.1	identified by match to protein family HMM PF00266
YP_001081449.1	identified by match to protein family HMM PF00665
YP_001081450.1	identified by match to protein family HMM PF01527
YP_001081451.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081452.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001081454.1	identified by match to protein family HMM PF07690
YP_001081456.1	identified by match to protein family HMM PF07690
YP_001081457.1	identified by match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266
YP_001081458.1	An oxygenase that acts to open the ring of homogentisate formingmaleylacetoacetate as part of the catabolism of L-tyrosine and L-phenylalanine
YP_001081459.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001081461.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_001081462.1	identified by match to protein family HMM PF00753
YP_001081464.1	identified by match to protein family HMM PF00563
YP_001081465.1	identified by match to protein family HMM PF04828
YP_001081466.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001081467.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001081469.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001081470.1	identified by match to protein family HMM PF05957
YP_001081475.1	identified by match to protein family HMM TIGR02532
YP_001081477.1	identified by match to protein family HMM TIGR02532
YP_001081478.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_001081479.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001081481.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001081482.2	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799
YP_001081483.1	identified by match to protein family HMM PF01618; match to protein family HMM TIGR02796
YP_001081484.1	identified by match to protein family HMM PF02472; match to protein family HMM TIGR02801
YP_001081485.1	identified by match to protein family HMM PF06519; match to protein family HMM TIGR02794
YP_001081486.2	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_001081487.1	identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802
YP_001081488.1	identified by match to protein family HMM TIGR02795
YP_001081489.1	identified by match to protein family HMM PF01527
YP_001081490.1	identified by match to protein family HMM PF00665
YP_001081492.1	identified by match to protein family HMM PF01610
YP_001081493.1	identified by match to protein family HMM PF00267; match to protein family HMM TIGR03304
YP_001081494.1	identified by match to protein family HMM PF01610
YP_001081495.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001081496.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_001081497.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001081498.1	Essential for recycling GMP and indirectly, cGMP
YP_001081499.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_001081500.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_001081501.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_001081502.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001081505.1	identified by match to protein family HMM TIGR01352
YP_001081507.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001081509.1	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_001081510.1	identified by match to protein family HMM PF00654
YP_001081512.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001081513.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_001081514.1	blocks the formation of polar Z-ring septums
YP_001081515.1	identified by match to protein family HMM PF00583
YP_001081518.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001081520.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001081521.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_001081522.1	identified by match to protein family HMM PF01580
YP_001081523.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_001081524.1	identified by match to protein family HMM PF01713
YP_001081525.1	identified by match to protein family HMM PF03458
YP_001081526.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_001081527.1	identified by match to protein family HMM PF00528
YP_001081528.1	identified by match to protein family HMM PF00528
YP_001081530.1	identified by match to protein family HMM PF01547
YP_001081532.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_001081533.1	identified by match to protein family HMM TIGR01198
YP_001081534.1	glucokinase catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_001081535.1	identified by match to protein family HMM PF00497
YP_001081536.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001081537.1	identified by match to protein family HMM PF00005
YP_001081538.1	catalyzes the formation of pyruvate from D-cysteine
YP_001081540.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_001081544.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_001081545.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_001081546.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001081548.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis
YP_001081549.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001081550.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001081551.1	identified by match to protein family HMM PF00155
YP_001081553.1	identified by match to protein family HMM PF01464
YP_001081554.1	identified by match to protein family HMM PF01977; match to protein family HMM TIGR00148
YP_001081555.1	identified by match to protein family HMM PF01810
YP_001081556.1	catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine
YP_001081559.1	identified by match to protein family HMM PF03807
YP_001081560.1	identified by match to protein family HMM PF02325
YP_001081562.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_001081565.1	identified by match to protein family HMM PF01609
YP_001081566.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001081567.1	identified by match to protein family HMM PF02146
YP_001081568.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001081569.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001081571.1	identified by match to protein family HMM PF03692
YP_001081573.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001081575.1	identified by match to protein family HMM PF01135; match to protein family HMM PF05175; match to protein family HMM PF08241
YP_001081576.1	identified by match to protein family HMM PF00581
YP_001081577.1	catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor
YP_001081580.1	identified by match to protein family HMM PF02653
YP_001081581.1	identified by match to protein family HMM PF02653
YP_001081582.1	identified by match to protein family HMM PF00005
YP_001081583.1	identified by match to protein family HMM PF00005
YP_001081584.1	identified by match to protein family HMM PF01774
YP_001081586.1	UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter
YP_001081587.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active
YP_001081588.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001081589.1	involved in the assembly of the urease metallocenter; possible nickel donor
YP_001081590.1	identified by match to protein family HMM PF01730
YP_001081591.1	identified by match to protein family HMM PF02492; match to protein family HMM TIGR00101
YP_001081592.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_001081594.2	identified by match to protein family HMM PF01075; match to protein family HMM TIGR02193
YP_001081595.1	identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_001081596.1	identified by match to protein family HMM PF01943
YP_001081597.1	identified by match to protein family HMM PF00535
YP_001081598.1	identified by match to protein family HMM PF00534
YP_001081599.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_001081600.1	identified by match to protein family HMM PF00953
YP_001081601.1	identified by match to protein family HMM PF01527
YP_001081602.1	identified by match to protein family HMM PF00665
YP_001081603.1	identified by match to protein family HMM PF01042
YP_001081604.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_001081605.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001081606.1	identified by match to protein family HMM PF02417
YP_001081608.1	identified by match to protein family HMM PF00850
YP_001081609.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_001081610.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001081612.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081613.1	identified by match to protein family HMM PF05232
YP_001081614.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081616.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001081617.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001081618.1	identified by match to protein family HMM PF00005
YP_001081620.1	identified by match to protein family HMM PF00301
YP_001081622.1	identified by match to protein family HMM PF00561
YP_001081624.1	identified by match to protein family HMM PF00665
YP_001081625.1	identified by match to protein family HMM PF01527
YP_001081627.1	identified by match to protein family HMM PF01609
YP_001081628.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001081629.1	identified by match to protein family HMM PF00254
YP_001081630.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001081631.2	identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009
YP_001081632.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_001081633.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001081635.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_001081636.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001081638.1	identified by match to protein family HMM PF00487
YP_001081639.1	identified by match to protein family HMM PF00924
YP_001081640.1	identified by match to protein family HMM PF01189
YP_001081641.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_001081642.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_001081643.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001081644.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001081645.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001081646.1	catalyzes the formation of dUMP from dUTP
YP_001081647.1	identified by match to protein family HMM PF03988
YP_001081650.1	identified by match to protein family HMM PF01527
YP_001081651.1	identified by match to protein family HMM PF00665
YP_001081652.1	identified by match to protein family HMM PF02643
YP_001081654.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001081659.1	identified by match to protein family HMM PF00248
YP_001081660.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001081665.1	identified by match to protein family HMM PF00285; match to protein family HMM PF00376
YP_001081667.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_001081669.1	identified by match to protein family HMM PF00563
YP_001081670.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001081672.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_001081673.1	identified by match to protein family HMM PF06127
YP_001081674.1	identified by match to protein family HMM PF00027
YP_001081675.1	identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937
YP_001081676.1	identified by match to protein family HMM PF00665
YP_001081677.1	identified by match to protein family HMM PF01527
YP_001081678.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_001081679.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001081681.1	Transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_001081682.1	identified by match to protein family HMM PF03966
YP_001081683.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_001081684.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001081685.1	identified by match to protein family HMM PF01609
YP_001081686.1	identified by match to protein family HMM PF00313
YP_001081687.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_001081688.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639
YP_001081689.1	identified by match to protein family HMM PF00665
YP_001081690.1	identified by match to protein family HMM PF01527
YP_001081693.1	identified by match to protein family HMM PF00155; match to protein family HMM PF01212
YP_001081694.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001081695.2	identified by match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08242; match to protein family HMM PF08659
YP_001081696.2	identified by match to protein family HMM PF00884
YP_001081697.1	identified by match to protein family HMM PF00106
YP_001081698.2	identified by match to protein family HMM PF05159
YP_001081700.1	identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662
YP_001081701.1	identified by match to protein family HMM PF00483
YP_001081702.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_001081703.1	identified by match to protein family HMM PF00288; match to protein family HMM PF08544
YP_001081704.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_001081705.1	identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_001081707.1	identified by match to protein family HMM PF00534
YP_001081710.1	identified by match to protein family HMM PF00534
YP_001081711.2	identified by match to protein family HMM PF07298
YP_001081714.2	identified by match to protein family HMM PF02563
YP_001081715.2	identified by match to protein family HMM PF00534
YP_001081716.1	identified by match to protein family HMM PF05159
YP_001081717.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_001081718.1	identified by match to protein family HMM PF00310
YP_001081719.1	identified by match to protein family HMM PF00924
YP_001081720.1	identified by match to protein family HMM PF09335
YP_001081721.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001081722.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001081723.1	identified by match to protein family HMM TIGR02246
YP_001081724.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001081726.1	identified by match to protein family HMM PF00308
YP_001081727.1	identified by match to protein family HMM TIGR01488; match to protein family HMM TIGR01490
YP_001081728.1	identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942
YP_001081729.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_001081730.1	identified by match to protein family HMM PF01712
YP_001081731.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001081732.1	identified by match to protein family HMM PF00425
YP_001081733.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001081735.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001081737.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001081738.1	identified by match to protein family HMM PF02738; match to protein family HMM TIGR01409
YP_001081739.1	identified by match to protein family HMM PF01479
YP_001081740.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001081741.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001081742.1	catalyzes the phosphorylation of NAD to NADP
YP_001081743.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_001081744.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_001081745.1	identified by match to protein family HMM TIGR02099
YP_001081746.1	identified by match to protein family HMM PF00795
YP_001081747.1	identified by match to protein family HMM PF01523
YP_001081749.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001081750.1	identified by match to protein family HMM PF01609
YP_001081751.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424
YP_001081752.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_001081753.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_001081757.1	identified by match to protein family HMM PF00403
YP_001081758.1	identified by match to protein family HMM PF01557; match to protein family HMM TIGR02303
YP_001081759.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_001081760.1	identified by match to protein family HMM PF02900; match to protein family HMM TIGR02298
YP_001081761.1	identified by match to protein family HMM PF04011
YP_001081762.1	identified by match to protein family HMM PF04536
YP_001081763.1	identified by match to protein family HMM PF04536
YP_001081765.1	identified by match to protein family HMM PF02321
YP_001081766.1	identified by match to protein family HMM TIGR01730
YP_001081767.1	identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914
YP_001081770.1	identified by match to protein family HMM PF01382
YP_001081771.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_001081772.1	identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF01128; match to protein family HMM TIGR01173
YP_001081774.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_001081775.1	identified by match to protein family HMM TIGR00526
YP_001081777.1	identified by match to protein family HMM PF02636
YP_001081780.1	identified by match to protein family HMM PF00294
YP_001081781.1	identified by match to protein family HMM PF07221
YP_001081782.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_001081783.1	identified by match to protein family HMM PF00015
YP_001081784.1	identified by match to protein family HMM PF01758
YP_001081787.1	identified by match to protein family HMM PF01527
YP_001081788.1	identified by match to protein family HMM PF00665
YP_001081789.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_001081793.1	identified by match to protein family HMM PF00245
YP_001081794.1	identified by match to protein family HMM PF00245
YP_001081796.1	identified by match to protein family HMM PF03932
YP_001081797.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433
YP_001081798.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001081799.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_001081800.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_001081804.1	identified by match to protein family HMM PF00106
YP_001081805.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001081806.1	identified by match to protein family HMM PF00484
YP_001081807.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_001081809.1	identified by match to protein family HMM PF00753
YP_001081810.1	identified by match to protein family HMM PF00005
YP_001081811.1	identified by match to protein family HMM PF00496
YP_001081813.1	identified by match to protein family HMM PF01047
YP_001081815.1	identified by match to protein family HMM PF00106
YP_001081816.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001081817.1	identified by match to protein family HMM PF01323
YP_001081818.1	identified by match to protein family HMM PF05036
YP_001081819.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001081821.1	identified by match to protein family HMM PF08895
YP_001081822.1	identified by match to protein family HMM PF01609
YP_001081823.1	identified by match to protein family HMM PF00665
YP_001081824.1	identified by match to protein family HMM PF01527
YP_001081826.1	identified by match to protein family HMM PF07152
YP_001081827.1	identified by match to protein family HMM PF00903
YP_001081828.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_001081829.1	identified by match to protein family HMM PF00730; match to protein family HMM PF06029
YP_001081830.1	involved in the first step of glutathione biosynthesis
YP_001081831.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_001081835.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081836.1	identified by match to protein family HMM PF01547
YP_001081837.1	identified by match to protein family HMM PF00850
YP_001081838.1	identified by match to protein family HMM PF00795
YP_001081839.1	identified by match to protein family HMM PF05853
YP_001081843.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_001081846.1	identified by match to protein family HMM PF00665
YP_001081847.1	identified by match to protein family HMM PF01527
YP_001081849.1	identified by match to protein family HMM PF07152
YP_001081850.1	identified by match to protein family HMM PF00903
YP_001081851.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM PF02805; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_001081852.1	identified by match to protein family HMM PF00730; match to protein family HMM PF06029
YP_001081853.1	involved in the first step of glutathione biosynthesis
YP_001081854.1	identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937
YP_001081858.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081859.1	identified by match to protein family HMM PF01547
YP_001081860.1	identified by match to protein family HMM PF00850
YP_001081861.1	identified by match to protein family HMM PF00795
YP_001081864.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_001081867.1	identified by match to protein family HMM PF00665
YP_001081868.1	identified by match to protein family HMM PF01527
YP_001081869.1	identified by match to protein family HMM PF01610
YP_001081871.1	identified by match to protein family HMM PF03061
YP_001081872.1	identified by match to protein family HMM PF01734
YP_001081873.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_001081874.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081875.1	decatenates replicating daughter chromosomes
YP_001081876.1	identified by match to protein family HMM PF00085
YP_001081877.1	identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732
YP_001081879.1	identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079
YP_001081880.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_001081882.1	identified by match to protein family HMM PF01810
YP_001081883.1	identified by match to protein family HMM PF01435
YP_001081886.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08448
YP_001081887.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954
YP_001081889.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_001081891.1	identified by match to protein family HMM PF01242
YP_001081894.1	identified by match to protein family HMM PF03328
YP_001081895.1	identified by match to protein family HMM PF08238
YP_001081896.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02210
YP_001081897.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001081898.1	identified by match to protein family HMM PF04093
YP_001081899.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001081900.1	functions in MreBCD complex in some organisms
YP_001081901.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_001081902.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001081903.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001081904.1	identified by match to protein family HMM PF03976
YP_001081905.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_001081906.1	identified by match to protein family HMM PF01609
YP_001081907.1	identified by match to protein family HMM PF07452
YP_001081908.1	identified by match to protein family HMM PF07859
YP_001081910.1	identified by match to protein family HMM PF07690
YP_001081911.1	identified by match to protein family HMM PF01047
YP_001081912.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_001081914.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001081915.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07908; match to protein family HMM PF07969
YP_001081916.1	identified by match to protein family HMM PF01042
YP_001081917.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_001081918.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_001081921.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913
YP_001081922.1	identified by match to protein family HMM PF01230
YP_001081923.1	identified by match to protein family HMM PF06155
YP_001081924.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_001081925.1	identified by match to protein family HMM PF04280
YP_001081926.1	identified by match to protein family HMM PF06843
YP_001081927.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_001081929.1	identified by match to protein family HMM PF05724; match to protein family HMM PF08242
YP_001081930.1	identified by match to protein family HMM TIGR02605
YP_001081931.1	identified by match to protein family HMM PF04367
YP_001081932.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001081933.1	converts dATP to dAMP and pyrophosphate
YP_001081934.1	identified by match to protein family HMM PF00614
YP_001081936.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001081937.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001081938.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001081939.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001081940.1	identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129
YP_001081941.1	identified by match to protein family HMM TIGR02664
YP_001081942.1	identified by match to protein family HMM PF03061
YP_001081944.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_001081945.1	identified by match to protein family HMM PF00483
YP_001081946.1	identified by match to protein family HMM PF01636
YP_001081947.1	identified by match to protein family HMM PF04453
YP_001081948.1	identified by match to protein family HMM PF00639; match to protein family HMM PF09312
YP_001081949.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001081950.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001081952.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068
YP_001081953.1	identified by match to protein family HMM PF01863
YP_001081954.1	identified by match to protein family HMM PF01553
YP_001081955.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_001081956.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001081957.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001081958.1	Transfers the fatty acyl group on membrane lipoproteins
YP_001081959.1	identified by match to protein family HMM PF00571; match to protein family HMM PF03471
YP_001081960.1	identified by match to protein family HMM PF04752
YP_001081961.2	contains unknown N-terminal domain/ metalloprotease C-terminal domain
YP_001081963.1	identified by match to protein family HMM PF02562
YP_001081964.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001081965.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001081966.1	identified by match to protein family HMM PF07690
YP_001081967.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_001081968.1	identified by match to protein family HMM PF00926; match to protein family HMM TIGR00506
YP_001081969.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_001081970.1	identified by match to protein family HMM PF00892
YP_001081972.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_001081973.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001081974.1	identified by match to protein family HMM PF00275
YP_001081975.1	identified by match to protein family HMM PF01042
YP_001081977.1	identified by match to protein family HMM PF00230
YP_001081978.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_001081979.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_001081982.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_001081983.1	identified by match to protein family HMM PF01019
YP_001081986.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_001081987.1	identified by match to protein family HMM PF00034
YP_001081989.1	identified by match to protein family HMM PF05425
YP_001081990.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_001081991.1	identified by match to protein family HMM PF04828
YP_001081993.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409
YP_001081994.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF03707
YP_001081995.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01966
YP_001081999.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF08447; match to protein family HMM TIGR00229
YP_001082000.1	identified by match to protein family HMM PF01527
YP_001082001.1	identified by match to protein family HMM PF00665
YP_001082002.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_001082015.1	identified by match to protein family HMM PF00498
YP_001082016.1	identified by match to protein family HMM PF00069
YP_001082019.1	identified by match to protein family HMM PF02624; match to protein family HMM TIGR00702
YP_001082020.1	identified by match to protein family HMM PF00596
YP_001082022.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_001082023.1	identified by match to protein family HMM PF01943
YP_001082024.1	identified by match to protein family HMM PF00534
YP_001082025.1	identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479
YP_001082028.1	identified by match to protein family HMM PF00534
YP_001082029.1	identified by match to protein family HMM PF01569
YP_001082031.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001082033.1	identified by match to protein family HMM PF00703
YP_001082034.1	identified by match to protein family HMM PF08893
YP_001082036.1	identified by match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001082037.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_001082038.1	identified by match to protein family HMM PF00027
YP_001082040.1	identified by match to protein family HMM PF02397; match to protein family HMM TIGR03023; match to protein family HMM TIGR03025
YP_001082041.1	identified by match to protein family HMM PF02563
YP_001082042.1	identified by match to protein family HMM PF00534
YP_001082043.1	identified by match to protein family HMM TIGR03304
YP_001082044.1	identified by match to protein family HMM PF01609
YP_001082045.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001082046.1	forms a direct contact with the tRNA during translation
YP_001082047.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_001082048.1	identified by match to protein family HMM PF00165
YP_001082049.1	identified by match to protein family HMM PF02798
YP_001082050.1	identified by match to protein family HMM PF00043; match to protein family HMM PF02798
YP_001082051.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001082053.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001082054.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001082055.1	identified by match to protein family HMM PF00300
YP_001082056.1	identified by match to protein family HMM PF08857
YP_001082058.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001082059.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001082060.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001082062.1	involved in de novo purine biosynthesis
YP_001082063.1	identified by match to protein family HMM PF02954
YP_001082064.1	identified by match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_001082065.1	identified by match to protein family HMM PF01494; match to protein family HMM TIGR01988
YP_001082066.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_001082068.1	identified by match to protein family HMM PF02798
YP_001082069.2	identified by match to protein family HMM PF01645
YP_001082070.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001082071.1	identified by match to protein family HMM PF00293
YP_001082072.1	identified by match to protein family HMM PF01262; match to protein family HMM PF05222
YP_001082074.1	identified by match to protein family HMM PF02233
YP_001082076.1	identified by match to protein family HMM PF08279
YP_001082083.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_001082086.1	identified by match to protein family HMM PF03886
YP_001082087.1	identified by match to protein family HMM PF02470
YP_001082089.2	identified by match to protein family HMM PF04403
YP_001082091.1	identified by match to protein family HMM PF01292
YP_001082092.1	identified by match to protein family HMM PF04264
YP_001082093.1	identified by match to protein family HMM PF04264
YP_001082096.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001082097.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_001082098.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_001082099.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001082100.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001082101.1	catalyzes branch migration in Holliday junction intermediates
YP_001082102.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082104.1	identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198
YP_001082106.1	identified by match to protein family HMM PF00210
YP_001082107.1	identified by match to protein family HMM PF01638
YP_001082108.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_001082109.1	identified by match to protein family HMM TIGR02322
YP_001082110.1	identified by match to protein family HMM PF06299
YP_001082111.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02325
YP_001082112.1	identified by match to protein family HMM PF06754; match to protein family HMM TIGR03293
YP_001082113.1	identified by match to protein family HMM PF05845
YP_001082114.1	identified by match to protein family HMM PF05861
YP_001082115.1	identified by match to protein family HMM PF06007
YP_001082116.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02323
YP_001082117.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02324
YP_001082118.1	identified by match to protein family HMM PF07969; match to protein family HMM TIGR02318
YP_001082119.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_001082122.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_001082123.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_001082124.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_001082125.1	identified by match to protein family HMM PF00037; match to protein family HMM PF02754
YP_001082126.1	identified by match to protein family HMM PF01565
YP_001082127.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001082128.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_001082130.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_001082131.1	identified by match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001082132.1	identified by match to protein family HMM PF01609
YP_001082133.1	identified by match to protein family HMM PF02566
YP_001082135.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001082137.1	identified by match to protein family HMM PF00310
YP_001082140.1	identified by match to protein family HMM PF00011
YP_001082141.1	identified by match to protein family HMM PF00011
YP_001082142.1	identified by match to protein family HMM PF00166
YP_001082145.1	identified by match to protein family HMM PF00005
YP_001082146.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001082147.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_001082148.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_001082150.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082151.1	identified by match to protein family HMM PF07690
YP_001082152.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001082153.1	identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313
YP_001082154.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_001082156.1	identified by match to protein family HMM PF01081; match to protein family HMM TIGR01182
YP_001082157.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_001082159.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_001082161.1	identified by match to protein family HMM PF03653
YP_001082162.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001082163.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_001082164.1	identified by match to protein family HMM PF04390
YP_001082165.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001082166.1	identified by match to protein family HMM PF02472
YP_001082167.1	identified by match to protein family HMM PF01618
YP_001082168.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001082169.1	identified by match to protein family HMM PF04355
YP_001082170.1	identified by match to protein family HMM PF01475
YP_001082173.2	catalyzes the formation of S-ureidoglycolate and urea from allantoate
YP_001082174.1	identified by match to protein family HMM PF00375
YP_001082175.1	identified by match to protein family HMM PF00665
YP_001082176.1	identified by match to protein family HMM PF01527
YP_001082177.1	identified by match to protein family HMM PF04966
YP_001082181.1	identified by match to protein family HMM PF01566
YP_001082184.1	identified by match to protein family HMM PF01609
YP_001082186.1	identified by match to protein family HMM PF01464
YP_001082187.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517
YP_001082188.1	identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533
YP_001082189.1	identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120
YP_001082191.1	identified by match to protein family HMM PF08334; match to protein family HMM TIGR01710
YP_001082192.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532
YP_001082193.1	identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532
YP_001082194.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_001082195.1	identified by match to protein family HMM PF03934
YP_001082196.1	identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709
YP_001082197.1	identified by match to protein family HMM PF04612
YP_001082199.1	identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845
YP_001082201.1	identified by match to protein family HMM PF01047
YP_001082204.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082206.1	identified by match to protein family HMM PF03788
YP_001082207.1	identified by match to protein family HMM PF04172
YP_001082209.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_001082210.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_001082211.1	identified by match to protein family HMM PF01052; match to protein family HMM TIGR02480
YP_001082212.1	identified by match to protein family HMM PF04347
YP_001082213.1	identified by match to protein family HMM PF01527
YP_001082214.1	identified by match to protein family HMM PF00665
YP_001082215.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_001082216.1	identified by match to protein family HMM PF01311; match to protein family HMM TIGR01400
YP_001082217.1	identified by match to protein family HMM PF09278
YP_001082218.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001082220.1	identified by match to protein family HMM PF09084
YP_001082221.2	identified by match to protein family HMM PF00005
YP_001082222.1	identified by match to protein family HMM PF00528
YP_001082223.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001082224.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001082228.1	identified by match to protein family HMM PF01555
YP_001082229.1	identified by match to protein family HMM PF04851
YP_001082232.1	identified by match to protein family HMM PF00165
YP_001082233.1	identified by match to protein family HMM PF00005
YP_001082234.1	identified by match to protein family HMM PF00005
YP_001082235.1	identified by match to protein family HMM PF02653
YP_001082236.1	identified by match to protein family HMM PF02653
YP_001082238.1	identified by match to protein family HMM PF00171
YP_001082241.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001082242.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001082243.1	identified by match to protein family HMM PF03551
YP_001082248.1	identified by match to protein family HMM PF00487
YP_001082249.1	identified by match to protein family HMM PF07848; match to protein family HMM PF08223
YP_001082250.1	identified by match to protein family HMM PF00165; match to protein family HMM PF01965
YP_001082251.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_001082252.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001082253.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001082254.1	identified by match to protein family HMM PF02515
YP_001082260.1	identified by match to protein family HMM PF00665
YP_001082261.1	identified by match to protein family HMM PF01527
YP_001082262.1	identified by match to protein family HMM PF05973; match to protein family HMM TIGR02683
YP_001082264.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540
YP_001082265.1	identified by match to protein family HMM PF04386
YP_001082266.1	identified by match to protein family HMM PF02798
YP_001082267.1	identified by match to protein family HMM PF02167
YP_001082268.1	identified by match to protein family HMM PF00033
YP_001082269.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416
YP_001082270.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_001082271.1	identified by match to protein family HMM PF00089; match to protein family HMM PF00595
YP_001082273.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_001082274.1	identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410
YP_001082275.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_001082276.1	identified by match to protein family HMM PF01230
YP_001082278.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_001082279.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_001082280.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001082281.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001082282.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001082283.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001082284.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001082285.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001082286.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001082287.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001082288.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001082289.1	identified by match to protein family HMM PF01722
YP_001082290.1	identified by match to protein family HMM PF01061
YP_001082291.1	identified by match to protein family HMM PF00005
YP_001082293.1	identified by match to protein family HMM PF05494
YP_001082294.1	identified by match to protein family HMM PF04333
YP_001082295.1	identified by match to protein family HMM PF02470
YP_001082296.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_001082297.1	identified by match to protein family HMM PF00005
YP_001082298.1	identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693
YP_001082299.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_001082300.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_001082301.1	identified by match to protein family HMM PF01266
YP_001082304.3	identified by match to protein family HMM PF00005; match to protein family HMM PF05992; match to protein family HMM PF06472
YP_001082305.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_001082306.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_001082307.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_001082308.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_001082309.1	identified by match to protein family HMM PF07605
YP_001082310.1	identified by match to protein family HMM PF03922
YP_001082311.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_001082312.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_001082313.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_001082314.1	identified by match to protein family HMM PF00528
YP_001082315.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_001082316.1	dGTPase type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001082317.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_001082318.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_001082319.1	identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515
YP_001082321.1	identified by match to protein family HMM PF05137
YP_001082323.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_001082324.1	identified by match to protein family HMM PF01609
YP_001082327.1	identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066
YP_001082329.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082330.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_001082331.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770
YP_001082332.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001082333.1	identified by match to protein family HMM PF02515
YP_001082334.1	identified by match to protein family HMM PF04341
YP_001082335.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_001082336.1	involved in the transport of C4-dicarboxylates across the membrane
YP_001082339.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954
YP_001082340.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001082342.1	identified by match to protein family HMM PF00975
YP_001082344.1	identified by match to protein family HMM PF00583
YP_001082346.1	identified by match to protein family HMM PF01078; match to protein family HMM PF07728; match to protein family HMM TIGR00368
YP_001082347.1	identified by match to protein family HMM PF04380
YP_001082348.1	identified by match to protein family HMM PF00543
YP_001082349.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_001082350.1	identified by match to protein family HMM PF01609
YP_001082351.1	identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049
YP_001082352.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_001082353.1	identified by match to protein family HMM PF03610
YP_001082354.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_001082355.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_001082357.1	identified by match to protein family HMM PF00899; match to protein family HMM PF05237
YP_001082358.1	identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_001082359.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_001082360.1	identified by match to protein family HMM PF00581
YP_001082361.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181
YP_001082362.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_001082363.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001082364.1	identified by match to protein family HMM PF01661
YP_001082366.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_001082368.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001082370.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF00691; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_001082371.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_001082373.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_001082375.1	identified by match to protein family HMM PF00510
YP_001082379.1	identified by match to protein family HMM PF02628
YP_001082380.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_001082381.1	identified by match to protein family HMM PF00578; match to protein family HMM PF02630
YP_001082382.1	identified by match to protein family HMM PF03795
YP_001082383.1	identified by match to protein family HMM PF00015; match to protein family HMM PF08269
YP_001082385.1	identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363
YP_001082386.1	identified by match to protein family HMM PF01609
YP_001082387.1	identified by match to protein family HMM PF01610
YP_001082389.1	identified by match to protein family HMM PF01654
YP_001082390.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_001082391.1	identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106
YP_001082394.1	identified by match to protein family HMM PF00728; match to protein family HMM PF03173
YP_001082395.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_001082396.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00381; match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR00830; match to protein family HMM TIGR01003; match to protein family HMM TIGR01417
YP_001082397.1	identified by match to protein family HMM PF01380
YP_001082398.1	identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221
YP_001082399.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_001082400.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082401.1	identified by match to protein family HMM PF00501
YP_001082408.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784
YP_001082409.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR03098
YP_001082411.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001082413.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_001082414.1	identified by match to protein family HMM PF02668
YP_001082415.1	identified by match to protein family HMM PF00005
YP_001082416.1	identified by match to protein family HMM PF01061
YP_001082418.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00709
YP_001082419.1	identified by match to protein family HMM PF00487
YP_001082421.1	identified by match to protein family HMM PF07690
YP_001082423.1	DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.
YP_001082426.1	identified by match to protein family HMM PF00005
YP_001082427.1	identified by match to protein family HMM PF02653
YP_001082428.1	identified by match to protein family HMM PF04392
YP_001082429.1	identified by match to protein family HMM PF01609
YP_001082430.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_001082433.1	identified by match to protein family HMM TIGR02246
YP_001082434.1	identified by match to protein family HMM PF00682
YP_001082436.1	identified by match to protein family HMM PF00583
YP_001082437.1	identified by match to protein family HMM PF02885
YP_001082438.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04324; match to protein family HMM PF04879
YP_001082439.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_001082440.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_001082442.1	identified by match to protein family HMM PF02798; match to protein family HMM TIGR01262
YP_001082444.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_001082445.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_001082446.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001082447.1	identified by match to protein family HMM PF00037
YP_001082448.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001082449.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001082450.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001082451.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001082452.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001082453.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_001082454.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07721
YP_001082455.2	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_001082456.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_001082457.1	identified by match to protein family HMM PF02190
YP_001082458.1	identified by match to protein family HMM PF03668
YP_001082459.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001082460.1	identified by match to protein family HMM PF00359
YP_001082461.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_001082462.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_001082463.1	identified by match to protein family HMM PF00005
YP_001082464.1	identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002
YP_001082465.1	identified by match to protein family HMM PF06835
YP_001082466.1	identified by match to protein family HMM TIGR01662; match to protein family HMM TIGR01670
YP_001082467.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393
YP_001082468.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254
YP_001082470.1	identified by match to protein family HMM PF01810
YP_001082471.1	identified by match to protein family HMM PF00293
YP_001082472.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001082475.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630
YP_001082476.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001082477.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001082479.1	identified by match to protein family HMM PF01527
YP_001082480.1	identified by match to protein family HMM PF00665
YP_001082482.1	identified by match to protein family HMM PF01094
YP_001082483.1	identified by match to protein family HMM PF07690
YP_001082484.1	identified by match to protein family HMM PF01243
YP_001082485.1	identified by match to protein family HMM PF00816
YP_001082486.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_001082487.1	identified by match to protein family HMM PF01037
YP_001082489.1	identified by match to protein family HMM PF00753
YP_001082490.1	identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413
YP_001082491.1	identified by match to protein family HMM PF01609
YP_001082492.1	identified by match to protein family HMM PF00216
YP_001082493.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_001082494.1	identified by match to protein family HMM PF00999
YP_001082495.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_001082497.2	identified by match to protein family HMM PF01022; match to protein family HMM PF01047
YP_001082498.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_001082499.1	identified by match to protein family HMM PF00724
YP_001082500.2	identified by match to protein family HMM PF00856
YP_001082502.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM PF08521
YP_001082503.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_001082505.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_001082506.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_001082507.1	identified by match to protein family HMM PF01037
YP_001082508.1	identified by match to protein family HMM PF01928
YP_001082509.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_001082510.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_001082511.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001082512.1	identified by match to protein family HMM PF00005
YP_001082513.1	identified by match to protein family HMM PF00005
YP_001082516.1	identified by match to protein family HMM PF02653
YP_001082517.1	identified by match to protein family HMM PF02653
YP_001082519.1	identified by match to protein family HMM PF01094
YP_001082520.1	identified by match to protein family HMM PF02653
YP_001082521.1	identified by match to protein family HMM PF00005; match to protein family HMM PF02653
YP_001082522.1	identified by match to protein family HMM PF00005
YP_001082523.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001082524.2	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001082525.1	identified by match to protein family HMM PF01656
YP_001082526.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_001082527.1	identified by match to protein family HMM PF03600
YP_001082529.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001082530.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001082531.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_001082532.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001082533.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001082534.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001082535.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001082536.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001082537.1	identified by match to protein family HMM PF01609
YP_001082538.1	activates fatty acids by binding to coenzyme A
YP_001082541.1	identified by match to protein family HMM PF00497
YP_001082542.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_001082543.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001082546.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_001082547.1	identified by match to protein family HMM PF01094
YP_001082548.1	identified by match to protein family HMM PF00501
YP_001082549.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_001082550.1	identified by match to protein family HMM PF00440
YP_001082552.1	catalyzes the transfer of an amino moiety
YP_001082553.1	identified by match to protein family HMM PF00497
YP_001082556.1	identified by match to protein family HMM PF03551
YP_001082557.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047
YP_001082558.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_001082561.1	identified by match to protein family HMM PF05552
YP_001082565.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00908
YP_001082566.1	identified by match to protein family HMM PF01609
YP_001082567.1	identified by match to protein family HMM PF06751
YP_001082568.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_001082570.1	identified by match to protein family HMM PF00171
YP_001082572.1	identified by match to protein family HMM PF00165
YP_001082574.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_001082576.1	identified by match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720
YP_001082579.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_001082580.1	identified by match to protein family HMM PF00364; match to protein family HMM PF01597; match to protein family HMM TIGR00527
YP_001082581.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001082584.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894
YP_001082585.1	identified by match to protein family HMM PF00657
YP_001082587.1	identified by match to protein family HMM PF00580
YP_001082588.1	identified by match to protein family HMM PF00034
YP_001082589.1	identified by match to protein family HMM PF00589
YP_001082590.1	identified by match to protein family HMM PF00665
YP_001082591.1	identified by match to protein family HMM PF01527
YP_001082594.2	identified by match to protein family HMM PF03067
YP_001082596.1	identified by match to protein family HMM PF01565; match to protein family HMM PF08031
YP_001082601.1	identified by match to protein family HMM PF03783
YP_001082603.1	identified by match to protein family HMM PF05643
YP_001082605.2	identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409
YP_001082607.1	identified by match to protein family HMM PF01810
YP_001082611.1	identified by match to protein family HMM PF00355
YP_001082612.1	identified by match to protein family HMM PF00132
YP_001082613.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001082614.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001082616.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_001082617.1	identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_001082618.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_001082620.1	identified by match to protein family HMM PF02465; match to protein family HMM PF07195; match to protein family HMM PF07196
YP_001082621.1	structural flagella protein; Vibrio contains multiple flagellin genes usually localized into two region on the chromosome, flaAC and flaCEDB in V. cholerae, flaFBA and flaCDE in V. parahemolyticus; FlaA is sigma 54 dependent and essential for motility in V.cholerae but not in V. parahaemolyticus
YP_001082622.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001082623.1	identified by match to protein family HMM PF03352
YP_001082624.1	identified by match to protein family HMM PF01869
YP_001082625.1	identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_001082626.1	porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure
YP_001082628.1	identified by match to protein family HMM PF00816
YP_001082629.1	identified by match to protein family HMM PF00534
YP_001082630.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_001082631.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_001082632.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_001082634.1	identified by match to protein family HMM PF00072
YP_001082635.1	identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF09078
YP_001082636.1	identified by match to protein family HMM PF01584
YP_001082637.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_001082638.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_001082639.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001082642.1	identified by match to protein family HMM PF00072
YP_001082643.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_001082646.1	identified by match to protein family HMM PF06983
YP_001082647.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_001082648.1	membrane protein involved in the flagellar export apparatus
YP_001082651.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_001082653.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001082654.1	identified by match to protein family HMM PF04020
YP_001082655.1	identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676
YP_001082656.1	identified by match to protein family HMM PF01425
YP_001082657.1	identified by match to protein family HMM PF01738
YP_001082659.1	identified by match to protein family HMM PF01527
YP_001082660.1	identified by match to protein family HMM PF00665
YP_001082661.1	identified by match to protein family HMM PF04965
YP_001082664.1	identified by match to protein family HMM PF06996
YP_001082665.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_001082666.1	identified by match to protein family HMM PF06812
YP_001082667.1	identified by match to protein family HMM PF00691
YP_001082669.1	identified by match to protein family HMM PF06744; match to protein family HMM PF06761
YP_001082671.1	identified by match to protein family HMM PF02557
YP_001082673.2	identified by match to protein family HMM PF02321
YP_001082674.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412
YP_001082675.1	identified by match to protein family HMM PF00529
YP_001082679.1	identified by match to protein family HMM PF01433
YP_001082682.1	identified by match to protein family HMM PF01757
YP_001082684.1	identified by match to protein family HMM PF05175
YP_001082686.1	identified by match to protein family HMM PF07209
YP_001082687.1	identified by match to protein family HMM PF00440
YP_001082688.1	identified by match to protein family HMM PF07690
YP_001082690.1	identified by match to protein family HMM PF00881
YP_001082692.1	identified by match to protein family HMM PF01609
YP_001082693.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_001082694.1	identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252
YP_001082695.1	identified by match to protein family HMM TIGR00441
YP_001082696.2	identified by match to protein family HMM PF04972
YP_001082697.1	identified by match to protein family HMM PF00034
YP_001082698.1	identified by match to protein family HMM PF00324
YP_001082699.1	identified by match to protein family HMM PF00665
YP_001082700.1	identified by match to protein family HMM PF01527
YP_001082701.1	identified by match to protein family HMM PF00313
YP_001082702.1	identified by match to protein family HMM PF01609
YP_001082703.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001082704.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_001082706.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_001082707.1	identified by match to protein family HMM PF04359
YP_001082708.1	identified by match to protein family HMM PF01063
YP_001082709.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_001082716.1	identified by match to protein family HMM PF02470
YP_001082717.1	identified by match to protein family HMM PF00005
YP_001082718.1	identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056
YP_001082719.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_001082720.1	identified by match to protein family HMM PF08238
YP_001082721.2	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_001082722.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001082724.1	identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199
YP_001082730.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001082731.1	identified by match to protein family HMM PF01557
YP_001082732.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001082735.1	identified by match to protein family HMM PF02574
YP_001082736.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_001082737.1	identified by match to protein family HMM PF01609
YP_001082738.1	identified by match to protein family HMM PF00267
YP_001082740.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001082741.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_001082742.1	identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209
YP_001082743.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_001082744.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001082745.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_001082746.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001082747.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001082748.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614
YP_001082749.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001082750.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001082751.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001082752.1	identified by match to protein family HMM PF03799; match to protein family HMM PF08478
YP_001082753.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_001082755.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001082756.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001082757.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001082759.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001082760.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_001082761.1	identified by match to protein family HMM PF05673
YP_001082762.1	identified by match to protein family HMM PF00293
YP_001082763.1	identified by match to protein family HMM PF03884
YP_001082764.1	identified by match to protein family HMM PF07072
YP_001082765.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_001082766.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_001082767.1	identified by match to protein family HMM PF00482
YP_001082768.1	identified by match to protein family HMM PF00437
YP_001082769.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_001082770.1	identified by match to protein family HMM PF01527
YP_001082771.1	identified by match to protein family HMM PF00665
YP_001082773.1	identified by match to protein family HMM PF00348
YP_001082774.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_001082775.1	involved in the peptidyltransferase reaction during translation
YP_001082776.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001082777.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_001082778.1	identified by match to protein family HMM PF01609
YP_001082779.1	identified by match to protein family HMM PF08750
YP_001082780.1	hydrolyzes diadenosine polyphosphate
YP_001082781.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001082782.1	identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427
YP_001082783.1	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_001082784.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_001082785.2	identified by match to protein family HMM PF01578
YP_001082787.1	identified by match to protein family HMM PF01510
YP_001082789.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001082790.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001082793.1	identified by match to protein family HMM PF05433
YP_001082794.1	identified by match to protein family HMM PF00294
YP_001082795.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001082796.1	identified by match to protein family HMM TIGR02098
YP_001082797.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001082798.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001082799.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001082800.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001082801.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_001082804.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081
YP_001082805.1	identified by match to protein family HMM PF05728
YP_001082806.1	identified by match to protein family HMM PF00773
YP_001082807.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001082808.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_001082809.1	identified by match to protein family HMM PF00450
YP_001082811.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_001082812.1	identified by match to protein family HMM PF05035
YP_001082813.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_001082814.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_001082815.1	identified by match to protein family HMM PF00532; match to protein family HMM TIGR01409
YP_001082816.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_001082817.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_001082818.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_001082819.1	identified by match to protein family HMM PF01263
YP_001082820.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001082822.1	identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199
YP_001082823.1	identified by match to protein family HMM PF04608
YP_001082824.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_001082825.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_001082826.1	identified by match to protein family HMM PF00545
YP_001082827.1	identified by match to protein family HMM PF01337
YP_001082829.2	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001082830.1	identified by match to protein family HMM PF00903
YP_001082831.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001082833.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001082834.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_001082836.1	identified by match to protein family HMM PF07690
YP_001082837.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_001082838.1	identified by match to protein family HMM PF00484
YP_001082839.1	controls the expression of the cynTSX operon involved in degrading and using cyanate as a sole nitrogen source
YP_001082840.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_001082841.1	identified by match to protein family HMM PF00375
YP_001082842.1	identified by match to protein family HMM PF01527
YP_001082843.1	identified by match to protein family HMM PF00665
YP_001082849.1	identified by match to protein family HMM PF00267
YP_001082851.1	identified by match to protein family HMM PF06912
YP_001082852.1	identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686
YP_001082855.1	identified by match to protein family HMM PF02417
YP_001082856.1	identified by match to protein family HMM PF02417
YP_001082858.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_001082859.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes.
YP_001082860.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_001082861.1	identified by match to protein family HMM PF07238; match to protein family HMM PF07317
YP_001082862.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_001082863.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_001082864.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Burkholderia thailandensis has 2 copies of this and other flagella genes
YP_001082865.1	makes up the distal portion of the flagellar basal body rod
YP_001082866.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_001082867.1	the hook connects flagellar basal body to the flagellar filament
YP_001082868.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_001082869.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_001082870.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_001082873.1	identified by match to protein family HMM PF04316
YP_001082874.1	identified by match to protein family HMM PF05130
YP_001082877.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_001082878.1	identified by match to protein family HMM PF02798
YP_001082879.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993
YP_001082880.1	identified by match to protein family HMM PF01464
YP_001082881.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_001082882.1	identified by match to protein family HMM PF01047
YP_001082883.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_001082884.1	identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_001082885.1	identified by match to protein family HMM PF03746
YP_001082887.1	identified by match to protein family HMM PF06149
YP_001082888.1	identified by match to protein family HMM PF06166
YP_001082889.1	identified by match to protein family HMM PF07446
YP_001082890.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_001082891.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_001082893.1	identified by match to protein family HMM PF00528
YP_001082894.1	identified by match to protein family HMM PF00496
YP_001082896.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001082897.1	identified by match to protein family HMM PF01355
YP_001082898.1	identified by match to protein family HMM PF01266
YP_001082899.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07728
YP_001082902.1	identified by match to protein family HMM PF03372
YP_001082903.1	identified by match to protein family HMM PF01810
YP_001082904.1	identified by match to protein family HMM PF00175; match to protein family HMM PF00970
YP_001082907.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_001082908.1	identified by match to protein family HMM PF00324
YP_001082909.1	identified by match to protein family HMM PF02625
YP_001082910.1	identified by match to protein family HMM PF03929
YP_001082914.1	identified by match to protein family HMM PF02561; match to protein family HMM TIGR00208
YP_001082915.1	identified by match to protein family HMM PF02049; match to protein family HMM TIGR00205
YP_001082916.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_001082917.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001082918.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_001082919.1	identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545
YP_001082920.1	identified by match to protein family HMM PF02050; match to protein family HMM TIGR02473
YP_001082921.1	identified by match to protein family HMM PF02120
YP_001082922.1	identified by match to protein family HMM PF00732; match to protein family HMM PF05199
YP_001082925.1	identified by match to protein family HMM PF00171
YP_001082927.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_001082930.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_001082932.1	identified by match to protein family HMM PF00892
YP_001082934.1	identified by match to protein family HMM PF00248
YP_001082937.1	identified by match to protein family HMM PF05721
YP_001082940.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001082941.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_001082942.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001082943.1	identified by match to protein family HMM PF04340
YP_001082944.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_001082946.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_001082947.1	identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420
YP_001082948.2	heat shock protein involved in degradation of misfolded proteins
YP_001082949.1	heat shock protein involved in degradation of misfolded proteins
YP_001082950.1	identified by match to protein family HMM PF00072; match to protein family HMM PF02954
YP_001082951.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_001082954.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001082955.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993
YP_001082956.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_001082957.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_001082958.1	identified by match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM TIGR02081
YP_001082959.1	identified by match to protein family HMM PF07690
YP_001082960.1	identified by match to protein family HMM PF01435
YP_001082961.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06719
YP_001082962.1	identified by match to protein family HMM PF01610
YP_001082963.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_001082964.1	identified by match to protein family HMM PF01609
YP_001082965.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_001082967.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_001082969.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_001082970.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001082971.1	identified by match to protein family HMM PF00665
YP_001082972.1	identified by match to protein family HMM PF01527
YP_001082974.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001082975.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_001082976.1	Modulates Rho-dependent transcription termination
YP_001082977.1	binds directly to 23S ribosomal RNA
YP_001082978.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001082980.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001082981.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001082982.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001082983.1	identified by match to protein family HMM PF01610
YP_001082984.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_001082985.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001082986.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001082987.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001082988.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001082989.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001082990.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001082991.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001082992.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001082993.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001082994.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001082995.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001082996.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001082997.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001082998.1	one of the stabilizing components for the large ribosomal subunit
YP_001082999.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001083000.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001083001.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001083002.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001083003.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_001083004.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001083005.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001083006.1	binds 5S rRNA along with protein L5 and L25
YP_001083007.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001083008.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001083009.1	late assembly protein
YP_001083010.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001083011.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001083012.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001083013.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001083014.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001083015.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001083016.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001083017.2	identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059
YP_001083018.1	identified by match to protein family HMM PF03091
YP_001083019.1	identified by match to protein family HMM PF00085; match to protein family HMM PF02683
YP_001083020.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001083021.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001083022.1	identified by match to protein family HMM PF00034
YP_001083023.2	identified by match to protein family HMM PF05140
YP_001083024.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144
YP_001083025.1	identified by match to protein family HMM PF01527
YP_001083026.1	identified by match to protein family HMM PF00665
YP_001083027.1	identified by match to protein family HMM PF03922
YP_001083030.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_001083031.1	identified by match to protein family HMM PF00258
YP_001083032.1	identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481
YP_001083033.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001083034.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_001083036.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_001083038.1	identified by match to protein family HMM PF01609
YP_001083039.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_001083040.1	identified by match to protein family HMM PF01037
YP_001083041.1	identified by match to protein family HMM PF00583
YP_001083042.1	identified by match to protein family HMM PF00440
YP_001083043.1	identified by match to protein family HMM PF08874
YP_001083044.1	identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160
YP_001083046.1	identified by match to protein family HMM PF05138; match to protein family HMM TIGR02158
YP_001083047.1	with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation
YP_001083050.1	identified by match to protein family HMM PF00657
YP_001083051.1	identified by match to protein family HMM PF01527
YP_001083052.1	identified by match to protein family HMM PF00665
YP_001083053.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001083056.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001083057.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_001083059.1	in Escherichia coli transcription of this gene is enhanced by polyamines